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Toni Gabaldón. Completed the Mestrado in Diploma de Estudios Avanzados in 1999/06/30 by Universitat de València, Licenciatura in Licenciatura en Ciencias Biologicas in 1997 by Universitat de València, Doctor in Comparative genomics in 2005/10/05 by Radboud Universiteit and Doctor in Comparative genomics in 2005/10/05 by Radboud Universiteit Centre for Molecular and Biomolecular Informatics. Is Principal Investigator in Centro Nacional de Supercomputación, Principal Investigator in Instituciò Catalana de Recerca i Estudis Avancats, Principal Investigator in Centro Nacional de Supercomputación and Principal Investigator in Institut de Recerca Biomèdica. Published 160 articles in journals. Has received 4 awards and/or honors.
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Identificação

Identificação pessoal

Nome completo
Toni Gabaldón

Nomes de citação

  • Gabaldón, Toni

Identificadores de autor

Ciência ID
A41F-7423-5D54
ORCID iD
0000-0003-0019-1735

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Alemão Utilizador independente (B1) Utilizador proficiente (C1) Utilizador independente (B1) Utilizador independente (B1)
Inglês Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1)
Catalão Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1)
Espanhol; Castelhano Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1)
Francês Utilizador independente (B1) Utilizador proficiente (C1) Utilizador elementar (A1) Utilizador independente (B1)
Holandês Utilizador independente (B1) Utilizador proficiente (C1) Utilizador independente (B1) Utilizador independente (B1)
Português Utilizador elementar (A1) Utilizador independente (B1) Utilizador elementar (A1) Utilizador elementar (A1)
Formação
Grau Classificação
2005/10/05
Concluído
 Comparative genomics (Doctor)
Radboud Universiteit, Países Baixos

Radboud Universiteit Centre for Molecular and Biomolecular Informatics, Países Baixos
"Origin and Evolution of the Mitochondrial Proteome" (TESE/DISSERTAÇÃO)
 Cum Laude. NCLMS Best Thesis of The year Award.
1999/06/30
Concluído
 Diploma de Estudios Avanzados (Mestrado)
Universitat de València, Espanha
"Gene regulation in response to stress of the Yeast Saccharomyces cerevisiae" (TESE/DISSERTAÇÃO)
 Excellent
1997
Concluído
 Licenciatura en Ciencias Biologicas (Licenciatura)
Universitat de València, Espanha
"Non applicable" (TESE/DISSERTAÇÃO)
 Excellent
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento 		Empregador
2019/04/01 - Atual Investigador principal (carreira) (Investigação) Centro Nacional de Supercomputación, Espanha
Institut de Recerca Biomèdica, Espanha
2019/04/01 - Atual Investigador principal (carreira) (Investigação) Instituciò Catalana de Recerca i Estudis Avancats, Espanha
2019/04/01 - Atual Investigador principal (carreira) (Investigação) Centro Nacional de Supercomputación, Espanha
2019/04/01 - Atual Investigador principal (carreira) (Investigação) Institut de Recerca Biomèdica, Espanha
2008/09/01 - 2019/04/01 Investigador principal (carreira) (Investigação) Centre de Regulació Genòmica, Espanha
2005/10/01 - 2008/10/01 Pós-doutorado (Investigação) Centro de Investigacion Principe Felipe, Espanha
2001/01/09 - 2005/01/10 Estagiário de Investigação (Investigação) Radboud Universiteit, Países Baixos
Produções

Publicações

Artigo em revista
  1. Toni Gabaldón; Cécile Fairhead. "Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal". Current Genetics 65 1 (2019): 93-98. https://doi.org/10.1007/s00294-018-0867-z.
    10.1007/s00294-018-0867-z
  2. Pedro González-Torres; Francisco Rodríguez-Mateos; Josefa Antón; Toni Gabaldón; Joseph Heitman. "Impact of Homologous Recombination on the Evolution of Prokaryotic Core Genomes". mBio (2019): https://doi.org/10.1128/mBio.02494-18.
    10.1128/mBio.02494-18
  3. Toni Gabaldón. "Relative timing of mitochondrial endosymbiosis and the “pre-mitochondrial symbioses” hypothesis". IUBMB Life 70 12 (2018): 1188-1196. https://doi.org/10.1002/iub.1950.
    10.1002/iub.1950
  4. Aimilia A. Stavrou; Verónica Mixão; Teun Boekhout; Toni Gabaldón. "Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications". Yeast (2018): https://doi.org/10.1002/yea.3303.
    10.1002/yea.3303
  5. Miguel A. Naranjo-Ortíz; Silvia Rodríguez-Píres; Rosario Torres; Antonieta De Cal; Josep Usall; Toni Gabaldón. "Genome Sequence of the Brown Rot Fungal Pathogen Monilinia laxa". Genome Announcements 6 17 (2018): e00214-18. https://doi.org/10.1128/genomeA.00214-18.
    10.1128/genomeA.00214-18
  6. Ester Saus; Jesse R. Willis; Leszek P. Pryszcz; Ahmed Hafez; Carlos Llorens; Heinz Himmelbauer; Toni Gabaldón. "nextPARS: parallel probing of RNA structures in Illumina". RNA 24 4 (2018): 609-619. https://doi.org/10.1261/rna.063073.117.
    10.1261/rna.063073.117
  7. Verónica Mixão; Toni Gabaldón. "Hybridization and emergence of virulence in opportunistic human yeast pathogens". Yeast (2018): https://doi.org/10.1002/yea.3242.
    10.1002/yea.3242
  8. Maite Echeverz; Josep Casadesús; Begoña García; Amaia Sabalza; Jaione Valle; Toni Gabaldón; Cristina Solano; Iñigo Lasa. "Lack of the PGA exopolysaccharide in Salmonella as an adaptive trait for survival in the host". PLOS Genetics 13 5 (2017): e1006816-e1006816. https://doi.org/10.1371%2Fjournal.pgen.1006816.
    10.1371/journal.pgen.1006816
  9. Figueras A; Robledo D; Corvelo A; Hermida M; Pereiro P; Rubiolo JA; Gómez-Garrido J; et al. "Whole Genome Sequencing of Turbot (Scophthalmus maximus; Pleuronectiformes): A Fish Adapted to Demersal Life.". (2016): http://europepmc.org/abstract/med/26951068.
  10. Pittis AA; Gabaldón T. "Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry.". (2016): http://europepmc.org/abstract/med/26840490.
    10.1038/nature16941
  11. Gabaldón T; Carreté L. "The birth of a deadly yeast: tracing the evolutionary emergence of virulence traits in Candida glabrata.". (2016): http://europepmc.org/abstract/med/26684722.
    10.1093/femsyr/fov110
  12. Gabaldón T; Ginger ML; Michels PA. "Peroxisomes in parasitic protists.". (2016): http://europepmc.org/abstract/med/26896770.
    10.1016/j.molbiopara.2016.02.005
  13. Marina Marcet-Houben; Toni Gabaldón. "Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi". Fungal Genetics and Biology 86 (2016): 71-80. https://doi.org/10.1016/j.fgb.2015.12.006.
    10.1016/j.fgb.2015.12.006
  14. Vlasova A; Capella-Gutiérrez S; Rendón-Anaya M; Hernández-Oñate M; Minoche AE; Erb I; Câmara F; et al. "Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes.". (2016): http://europepmc.org/abstract/med/26911872.
    10.1186/s13059-016-0883-6
  15. Banani H; Marcet-Houben M; Ballester AR; Abbruscato P; González-Candelas L; Gabaldón T; Spadaro D. "Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum.". (2016): http://europepmc.org/abstract/med/26729047.
    10.1186/s12864-015-2347-x
  16. Vandewege MW; Mangum SF; Gabaldón T; Castoe TA; Ray DA; Hoffmann FG. "Contrasting Patterns of Evolutionary Diversification in the Olfactory Repertoires of Reptile and Bird Genomes.". (2016): http://europepmc.org/abstract/med/26865070.
    10.1093/gbe/evw013
  17. Julca I; Droby S; Sela N; Marcet-Houben M; Gabaldón T. "Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens: Penicillium digitatum and Penicillium expansum.". (2016): http://europepmc.org/abstract/med/26672008.
    10.1093/gbe/evv252
  18. Gabaldón T; Pittis AA. "Origin and evolution of metabolic sub-cellular compartmentalization in eukaryotes.". (2015): http://europepmc.org/abstract/med/25869000.
    10.1016/j.biochi.2015.03.021
  19. González-Torres P; Pryszcz LP; Santos F; Martínez-García M; Gabaldón T; Antón J. "Interactions between closely related bacterial strains are revealed by deep transcriptome sequencing.". (2015): http://europepmc.org/abstract/med/26431969.
    10.1128/AEM.02690-15
  20. Pryszcz LP; Németh T; Saus E; Ksiezopolska E; Hegedusová E; Nosek J; Wolfe KH; Gacser A; Gabaldón T. "The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis.". (2015): http://europepmc.org/abstract/med/26517373.
    10.1371/journal.pgen.1005626
  21. Mariotti M; Santesmasses D; Capella-Gutierrez S; Mateo A; Arnan C; Johnson R; D'Aniello S; et al. "Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization.". (2015): http://europepmc.org/abstract/med/26194102.
    10.1101/gr.190538.115
  22. Marcet-Houben M; Gabaldón T. "Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage.". (2015): http://europepmc.org/abstract/med/26252497.
    10.1371/journal.pbio.1002220
  23. Boeckmann B; Marcet-Houben M; Rees JA; Forslund K; Huerta-Cepas J; Muffato M; Yilmaz P; et al. "Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.". (2015): http://europepmc.org/abstract/med/26133389.
    10.1093/gbe/evv121
  24. Krypotou E; Evangelidis T; Bobonis J; Pittis AA; Gabaldón T; Scazzocchio C; Mikros E; Diallinas G. "Origin, diversification and substrate specificity in the family of NCS1/FUR transporters.". (2015): http://europepmc.org/abstract/med/25712422.
    10.1111/mmi.12982
  25. Gérecová G; Nebohácová M; Zeman I; Pryszcz LP; Tomáška L; Gabaldón T; Nosek J. "Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans.". (2015): http://europepmc.org/abstract/med/25743787.
    10.1093/femsyr/fov006
  26. Aversano R; Contaldi F; Ercolano MR; Grosso V; Iorizzo M; Tatino F; Xumerle L; et al. "The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives.". (2015): http://europepmc.org/abstract/med/25873387.
    10.1105/tpc.114.135954
  27. Ballester AR; Marcet-Houben M; Levin E; Sela N; Selma-Lázaro C; Carmona L; Wisniewski M; et al. "Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity.". (2015): http://europepmc.org/abstract/med/25338147.
    10.1094/MPMI-09-14-0261-FI
  28. Perlin MH; Amselem J; Fontanillas E; Toh SS; Chen Z; Goldberg J; Duplessis S; et al. "Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus.". (2015): http://europepmc.org/abstract/med/26076695.
    10.1186/s12864-015-1660-8
  29. Morel G; Sterck L; Swennen D; Marcet-Houben M; Onesime D; Levasseur A; Jacques N; et al. "Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts.". (2015): http://europepmc.org/abstract/med/26108467.
    10.1038/srep11571
  30. Valdivia HO; Scholte LL; Oliveira G; Gabaldón T; Bartholomeu DC. "The Leishmania metaphylome: a comprehensive survey of Leishmania protein phylogenetic relationships.". (2015): http://europepmc.org/abstract/med/26518129.
    10.1186/s12864-015-2091-2
  31. Jarvis ED; Mirarab S; Aberer AJ; Li B; Houde P; Li C; Ho SY; et al. "Whole-genome analyses resolve early branches in the tree of life of modern birds.". (2014): http://europepmc.org/abstract/med/25504713.
    10.1126/science.1253451
  32. Green RE; Braun EL; Armstrong J; Earl D; Nguyen N; Hickey G; Vandewege MW; et al. "Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.". (2014): http://europepmc.org/abstract/med/25504731.
    10.1126/science.1254449
  33. Chipman AD; Ferrier DE; Brena C; Qu J; Hughes DS; Schröder R; Torres-Oliva M; et al. "The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima.". (2014): http://europepmc.org/abstract/med/25423365.
    10.1371/journal.pbio.1002005
  34. Zhao P; Capella-Gutíerrez S; Shi Y; Zhao X; Chen G; Gabaldón T; Ma XF. "Transcriptomic analysis of a psammophyte food crop, sand rice (Agriophyllum squarrosum) and identification of candidate genes essential for sand dune adaptation.". (2014): http://europepmc.org/abstract/med/25287394.
  35. Schwartze VU; Winter S; Shelest E; Marcet-Houben M; Horn F; Wehner S; Linde J; et al. "Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina).". (2014): http://europepmc.org/abstract/med/25121733.
    10.1371/journal.pgen.1004496
  36. Gabaldón T. "A metabolic scenario for the evolutionary origin of peroxisomes from the endomembranous system.". (2014): http://europepmc.org/abstract/med/23884279.
    10.1007/s00018-013-1424-z
  37. Gabaldón T. "Evolutionary considerations on the origin of peroxisomes from the endoplasmic reticulum, and their relationships with mitochondria.". (2014): http://europepmc.org/abstract/med/24838097.
    10.1007/s00018-014-1640-1
  38. Sonnhammer E; Gabaldón T; Wilter Sousa da Silva A; Martin M; Robinson-Rechavi M; Boeckmann B; Thomas P; Dessimoz C; the Quest for Orthologs consortium. "Big Data and Other Challenges in the Quest for Orthologs.". (2014): http://europepmc.org/abstract/med/25064571.
    10.1093/bioinformatics/btu492
  39. Gomariz M; Martínez-García M; Santos F; Rodriguez F; Capella-Gutiérrez S; Gabaldón T; Rosselló-Móra R; Meseguer I; Antón J. "From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists.". (2014): http://europepmc.org/abstract/med/24926861.
    10.1038/ismej.2014.95
  40. Schwarzmüller T; Ma B; Hiller E; Istel F; Tscherner M; Brunke S; Ames L; et al. "Systematic phenotyping of a large-scale Candida glabrata deletion collection reveals novel antifungal tolerance genes.". (2014): http://europepmc.org/abstract/med/24945925.
    10.1371/journal.ppat.1004211
  41. Pryszcz LP; Németh T; Gácser A; Gabaldón T. "Genome comparison of Candida orthopsilosis clinical strains reveals the existence of hybrids between two distinct subspecies.". (2014): http://europepmc.org/abstract/med/24747362.
    10.1093/gbe/evu082
  42. Capella-Gutierrez S; Kauff F; Gabaldón T. "A phylogenomics approach for selecting robust sets of phylogenetic markers.". (2014): http://europepmc.org/abstract/med/24476915.
    10.1093/nar/gku071
  43. Supek F; Miñana B; Valcárcel J; Gabaldón T; Lehner B. "Synonymous mutations frequently act as driver mutations in human cancers.". (2014): http://europepmc.org/abstract/med/24630730.
    10.1016/j.cell.2014.01.051
  44. Dohm JC; Minoche AE; Holtgräwe D; Capella-Gutiérrez S; Zakrzewski F; Tafer H; Rupp O; et al. "The genome of the recently domesticated crop plant sugar beet (Beta vulgaris).". (2014): http://europepmc.org/abstract/med/24352233.
    10.1038/nature12817
  45. Hatzihristidis T; Liu S; Pryszcz L; Hutchins AP; Gabaldón T; Tremblay ML; Miranda-Saavedra D. "PTP-central: a comprehensive resource of protein tyrosine phosphatases in eukaryotic genomes.". (2014): http://europepmc.org/abstract/med/23911837.
    10.1016/j.ymeth.2013.07.031
  46. Powell S; Forslund K; Szklarczyk D; Trachana K; Roth A; Huerta-Cepas J; Gabaldón T; et al. "eggNOG v4.0: nested orthology inference across 3686 organisms.". (2014): http://europepmc.org/abstract/med/24297252.
    10.1093/nar/gkt1253
  47. Hinojosa-Alvarez S; Díaz-Jaimes P; Marcet-Houben M; Gabaldón T. "The complete mitochondrial genome of the Giant Manta ray, Manta birostris.". (2014): http://europepmc.org/abstract/med/24409907.
    10.3109/19401736.2013.855753
  48. Huerta-Cepas J; Capella-Gutiérrez S; Pryszcz LP; Marcet-Houben M; Gabaldón T. "PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.". (2014): http://europepmc.org/abstract/med/24275491.
    10.1093/nar/gkt1177
  49. Krisko A; Copic T; Gabaldón T; Lehner B; Supek F. "Inferring gene function from evolutionary change in signatures of translation efficiency.". (2014): http://europepmc.org/abstract/med/24580753.
    10.1186/gb-2014-15-3-r44
  50. Aguileta G; de Vienne DM; Ross ON; Hood ME; Giraud T; Petit E; Gabaldón T. "High variability of mitochondrial gene order among fungi.". (2014): http://europepmc.org/abstract/med/24504088.
    10.1093/gbe/evu028
  51. Kunze G; Gaillardin C; Czernicka M; Durrens P; Martin T; Böer E; Gabaldón T; et al. "The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.". (2014): http://europepmc.org/abstract/med/24834124.
    10.1186/1754-6834-7-66
  52. Galindo-Moreno J; Iurlaro R; El Mjiyad N; Díez-Pérez J; Gabaldón T; Muñoz-Pinedo C. "Apolipoprotein L2 contains a BH3-like domain but it does not behave as a BH3-only protein.". (2014): http://europepmc.org/abstract/med/24901046.
    10.1038/cddis.2014.237
  53. Castanera R; Pérez G; López L; Sancho R; Santoyo F; Alfaro M; Gabaldón T; et al. "Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi.". (2014): http://europepmc.org/abstract/med/25480150.
    10.1186/1471-2164-15-1071
  54. Lysøe E; Harris LJ; Walkowiak S; Subramaniam R; Divon HH; Riiser ES; Llorens C; et al. "The genome of the generalist plant pathogen Fusarium avenaceum is enriched with genes involved in redox, signaling and secondary metabolism.". (2014): http://europepmc.org/abstract/med/25409087.
    10.1371/journal.pone.0112703
  55. Lavín JL; Marcet-Houben M; Gutiérrez-Vázquez RL; Ramírez L; Pisabarro AG; Gabaldón T; Oguiza JA. "FUNGALOXPHOS: an integrated database for oxidative phosphorylation in fungi.". (2013): http://europepmc.org/abstract/med/23628689.
    10.1016/j.mito.2013.04.009
  56. Gabaldón T; Koonin EV. "Functional and evolutionary implications of gene orthology.". (2013): http://europepmc.org/abstract/med/23552219.
    10.1038/nrg3456
  57. Capella-Gutiérrez S; Gabaldón T. "Measuring guide-tree dependency of inferred gaps in progressive aligners.". (2013): http://europepmc.org/abstract/med/23435067.
    10.1093/bioinformatics/btt095
  58. Mohd-Padil H; Mohd-Adnan A; Gabaldón T. "Phylogenetic analyses uncover a novel clade of transferrin in nonmammalian vertebrates.". (2013): http://europepmc.org/abstract/med/23258311.
    10.1093/molbev/mss325
  59. Collén J; Porcel B; Carré W; Ball SG; Chaparro C; Tonon T; Barbeyron T; et al. "Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.". (2013): http://europepmc.org/abstract/med/23503846.
    10.1073/pnas.1221259110
  60. Hagen F; Ceresini PC; Polacheck I; Ma H; van Nieuwerburgh F; Gabaldón T; Kagan S; et al. "Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest.". (2013): http://europepmc.org/abstract/med/23940707.
    10.1371/journal.pone.0071148
  61. Gabaldón T; Martin T; Marcet-Houben M; Durrens P; Bolotin-Fukuhara M; Lespinet O; Arnaise S; et al. "Comparative genomics of emerging pathogens in the Candida glabrata clade.". (2013): http://europepmc.org/abstract/med/24034898.
    10.1186/1471-2164-14-623
  62. Jiménez-Guri E; Huerta-Cepas J; Cozzuto L; Wotton KR; Kang H; Himmelbauer H; Roma G; Gabaldón T; Jaeger J. "Comparative transcriptomics of early dipteran development.". (2013): http://europepmc.org/abstract/med/23432914.
    10.1186/1471-2164-14-123
  63. Pryszcz LP; Németh T; Gácser A; Gabaldón T. "Unexpected genomic variability in clinical and environmental strains of the pathogenic yeast Candida parapsilosis.". (2013): http://europepmc.org/abstract/med/24259314.
    10.1093/gbe/evt185
  64. Ferreira PG; Patalano S; Chauhan R; Ffrench-Constant R; Gabaldón T; Guigó R; Sumner S. "Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes.". (2013): http://europepmc.org/abstract/med/23442883.
    10.1186/gb-2013-14-2-r20
  65. Silva, L.L.; Marcet-Houben, M.; Nahum, L.A.; Zerlotini, A.; Gabaldón, T.; Oliveira, G.. "The Schistosoma mansoni phylome: Using evolutionary genomics to gain insight into a parasite's biology". BMC Genomics (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84868634147&partnerID=MN8TOARS.
  66. Bohle, H.M.; Gabaldón, T.. "Selection of marker genes using whole-genome DNA polymorphism analysis". Evolutionary Bioinformatics 2012 8 (2012): 161-169. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859465148&partnerID=MN8TOARS.
  67. Miranda-Saavedra, D.; Gabaldón, T.; Barton, G.J.; Langsley, G.; Doerig, C.. "The kinomes of apicomplexan parasites". Microbes and Infection 14 10 (2012): 796-810. http://www.scopus.com/inward/record.url?eid=2-s2.0-84863828202&partnerID=MN8TOARS.
  68. Dessimoz, C.; Gabaldón, T.; Roos, D.S.; Sonnhammer, E.L.L.; Herrero, J.; Altenhoff, A.; Apweiler, R.; et al. "Toward community standards in the quest for orthologs". Bioinformatics 28 6 (2012): 900-904. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859038699&partnerID=MN8TOARS.
  69. Piškur, J.; Ling, Z.; Marcet-Houben, M.; Ishchuk, O.P.; Aerts, A.; LaButti, K.; Copeland, A.; et al. "The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties". International Journal of Food Microbiology 157 2 (2012): 202-209. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862840690&partnerID=MN8TOARS.
  70. Garcia-Mas, J.; Benjak, A.; Sanseverino, W.; Bourgeois, M.; Mir, G.; Gonzalez, V.M.; Henaff, E.; et al. "The genome of melon (Cucumis melo L.)". Proceedings of the National Academy of Sciences of the United States of America 109 29 (2012): 11872-11877. http://www.scopus.com/inward/record.url?eid=2-s2.0-84863888434&partnerID=MN8TOARS.
  71. Capella-Gutiérrez, S.; Marcet-Houben, M.; Gabaldón, T.. "Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi". BMC Biology 10 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84863210484&partnerID=MN8TOARS.
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Outros

Outra produção
  1. Transcriptomic analyses reveal groups of co-expressed, syntenic lncRNAs in four species of the genus Caenorhabditis. 2018. Cinta Pegueroles; Susana Iraola-Guzmán; Uciel P. Chorostecki; Ewa Ksiezopolska; Ester Saus; Toni Gabaldón. https://doi.org/10.1101/411561.
    10.1101/411561
Distinções

Prémio

2017 Margaret Dayhoff Award
Society for Molecular Biology and Evolution, Estados Unidos

Outra distinção

2013 Elected Membership
2013 ICREA Professorship
Instituciò Catalana de Recerca i Estudis Avancats, Espanha
2005 Best PhD Thesis of The Year Award
Radboud Universiteit, Países Baixos