| Journal article |
- Toni Gabaldón; Cécile Fairhead. "Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal".
Current Genetics 65 1 (2019): 93-98. https://doi.org/10.1007/s00294-018-0867-z.
10.1007/s00294-018-0867-z
- Pedro González-Torres; Francisco Rodríguez-Mateos; Josefa Antón; Toni Gabaldón; Joseph Heitman. "Impact of Homologous Recombination
on the Evolution of Prokaryotic Core Genomes". mBio (2019): https://doi.org/10.1128/mBio.02494-18.
10.1128/mBio.02494-18
- Toni Gabaldón. "Relative timing of mitochondrial endosymbiosis and the “pre-mitochondrial symbioses” hypothesis". IUBMB
Life 70 12 (2018): 1188-1196. https://doi.org/10.1002/iub.1950.
10.1002/iub.1950
- Aimilia A. Stavrou; Verónica Mixão; Teun Boekhout; Toni Gabaldón. "Misidentification of genome assemblies in public databases:
The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications". Yeast (2018): https://doi.org/10.1002/yea.3303.
10.1002/yea.3303
- Miguel A. Naranjo-Ortíz; Silvia Rodríguez-Píres; Rosario Torres; Antonieta De Cal; Josep Usall; Toni Gabaldón. "Genome Sequence
of the Brown Rot Fungal Pathogen Monilinia laxa". Genome Announcements 6 17 (2018): e00214-18. https://doi.org/10.1128/genomeA.00214-18.
10.1128/genomeA.00214-18
- Ester Saus; Jesse R. Willis; Leszek P. Pryszcz; Ahmed Hafez; Carlos Llorens; Heinz Himmelbauer; Toni Gabaldón. "nextPARS:
parallel probing of RNA structures in Illumina". RNA 24 4 (2018): 609-619. https://doi.org/10.1261/rna.063073.117.
10.1261/rna.063073.117
- Verónica Mixão; Toni Gabaldón. "Hybridization and emergence of virulence in opportunistic human yeast pathogens". Yeast
(2018): https://doi.org/10.1002/yea.3242.
10.1002/yea.3242
- Maite Echeverz; Josep Casadesús; Begoña García; Amaia Sabalza; Jaione Valle; Toni Gabaldón; Cristina Solano; Iñigo Lasa. "Lack
of the PGA exopolysaccharide in Salmonella as an adaptive trait for survival in the host". PLOS Genetics 13 5 (2017):
e1006816-e1006816. https://doi.org/10.1371%2Fjournal.pgen.1006816.
10.1371/journal.pgen.1006816
- Figueras A; Robledo D; Corvelo A; Hermida M; Pereiro P; Rubiolo JA; Gómez-Garrido J; et al. "Whole Genome Sequencing of Turbot
(Scophthalmus maximus; Pleuronectiformes): A Fish Adapted to Demersal Life.". (2016): http://europepmc.org/abstract/med/26951068.
- Pittis AA; Gabaldón T. "Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry.". (2016): http://europepmc.org/abstract/med/26840490.
10.1038/nature16941
- Gabaldón T; Carreté L. "The birth of a deadly yeast: tracing the evolutionary emergence of virulence traits in Candida glabrata.".
(2016): http://europepmc.org/abstract/med/26684722.
10.1093/femsyr/fov110
- Gabaldón T; Ginger ML; Michels PA. "Peroxisomes in parasitic protists.". (2016): http://europepmc.org/abstract/med/26896770.
10.1016/j.molbiopara.2016.02.005
- Marina Marcet-Houben; Toni Gabaldón. "Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi".
Fungal Genetics and Biology 86 (2016): 71-80. https://doi.org/10.1016/j.fgb.2015.12.006.
10.1016/j.fgb.2015.12.006
- Vlasova A; Capella-Gutiérrez S; Rendón-Anaya M; Hernández-Oñate M; Minoche AE; Erb I; Câmara F; et al. "Genome and transcriptome
analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization
of genes.". (2016): http://europepmc.org/abstract/med/26911872.
10.1186/s13059-016-0883-6
- Banani H; Marcet-Houben M; Ballester AR; Abbruscato P; González-Candelas L; Gabaldón T; Spadaro D. "Genome sequencing and
secondary metabolism of the postharvest pathogen Penicillium griseofulvum.". (2016): http://europepmc.org/abstract/med/26729047.
10.1186/s12864-015-2347-x
- Vandewege MW; Mangum SF; Gabaldón T; Castoe TA; Ray DA; Hoffmann FG. "Contrasting Patterns of Evolutionary Diversification
in the Olfactory Repertoires of Reptile and Bird Genomes.". (2016): http://europepmc.org/abstract/med/26865070.
10.1093/gbe/evw013
- Julca I; Droby S; Sela N; Marcet-Houben M; Gabaldón T. "Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens:
Penicillium digitatum and Penicillium expansum.". (2016): http://europepmc.org/abstract/med/26672008.
10.1093/gbe/evv252
- Gabaldón T; Pittis AA. "Origin and evolution of metabolic sub-cellular compartmentalization in eukaryotes.". (2015): http://europepmc.org/abstract/med/25869000.
10.1016/j.biochi.2015.03.021
- González-Torres P; Pryszcz LP; Santos F; Martínez-García M; Gabaldón T; Antón J. "Interactions between closely related bacterial
strains are revealed by deep transcriptome sequencing.". (2015): http://europepmc.org/abstract/med/26431969.
10.1128/AEM.02690-15
- Pryszcz LP; Németh T; Saus E; Ksiezopolska E; Hegedusová E; Nosek J; Wolfe KH; Gacser A; Gabaldón T. "The Genomic Aftermath
of Hybridization in the Opportunistic Pathogen Candida metapsilosis.". (2015): http://europepmc.org/abstract/med/26517373.
10.1371/journal.pgen.1005626
- Mariotti M; Santesmasses D; Capella-Gutierrez S; Mateo A; Arnan C; Johnson R; D'Aniello S; et al. "Evolution of selenophosphate
synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization.". (2015):
http://europepmc.org/abstract/med/26194102.
10.1101/gr.190538.115
- Marcet-Houben M; Gabaldón T. "Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization
in the Baker's Yeast Lineage.". (2015): http://europepmc.org/abstract/med/26252497.
10.1371/journal.pbio.1002220
- Boeckmann B; Marcet-Houben M; Rees JA; Forslund K; Huerta-Cepas J; Muffato M; Yilmaz P; et al. "Quest for Orthologs Entails
Quest for Tree of Life: In Search of the Gene Stream.". (2015): http://europepmc.org/abstract/med/26133389.
10.1093/gbe/evv121
- Krypotou E; Evangelidis T; Bobonis J; Pittis AA; Gabaldón T; Scazzocchio C; Mikros E; Diallinas G. "Origin, diversification
and substrate specificity in the family of NCS1/FUR transporters.". (2015): http://europepmc.org/abstract/med/25712422.
10.1111/mmi.12982
- Gérecová G; Nebohácová M; Zeman I; Pryszcz LP; Tomáška L; Gabaldón T; Nosek J. "Metabolic gene clusters encoding the enzymes
of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans.". (2015): http://europepmc.org/abstract/med/25743787.
10.1093/femsyr/fov006
- Aversano R; Contaldi F; Ercolano MR; Grosso V; Iorizzo M; Tatino F; Xumerle L; et al. "The Solanum commersonii Genome Sequence
Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives.". (2015): http://europepmc.org/abstract/med/25873387.
10.1105/tpc.114.135954
- Ballester AR; Marcet-Houben M; Levin E; Sela N; Selma-Lázaro C; Carmona L; Wisniewski M; et al. "Genome, Transcriptome, and
Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity.". (2015): http://europepmc.org/abstract/med/25338147.
10.1094/MPMI-09-14-0261-FI
- Perlin MH; Amselem J; Fontanillas E; Toh SS; Chen Z; Goldberg J; Duplessis S; et al. "Sex and parasites: genomic and transcriptomic
analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus.". (2015): http://europepmc.org/abstract/med/26076695.
10.1186/s12864-015-1660-8
- Morel G; Sterck L; Swennen D; Marcet-Houben M; Onesime D; Levasseur A; Jacques N; et al. "Differential gene retention as an
evolutionary mechanism to generate biodiversity and adaptation in yeasts.". (2015): http://europepmc.org/abstract/med/26108467.
10.1038/srep11571
- Valdivia HO; Scholte LL; Oliveira G; Gabaldón T; Bartholomeu DC. "The Leishmania metaphylome: a comprehensive survey of Leishmania
protein phylogenetic relationships.". (2015): http://europepmc.org/abstract/med/26518129.
10.1186/s12864-015-2091-2
- Jarvis ED; Mirarab S; Aberer AJ; Li B; Houde P; Li C; Ho SY; et al. "Whole-genome analyses resolve early branches in the tree
of life of modern birds.". (2014): http://europepmc.org/abstract/med/25504713.
10.1126/science.1253451
- Green RE; Braun EL; Armstrong J; Earl D; Nguyen N; Hickey G; Vandewege MW; et al. "Three crocodilian genomes reveal ancestral
patterns of evolution among archosaurs.". (2014): http://europepmc.org/abstract/med/25504731.
10.1126/science.1254449
- Chipman AD; Ferrier DE; Brena C; Qu J; Hughes DS; Schröder R; Torres-Oliva M; et al. "The first myriapod genome sequence reveals
conservative arthropod gene content and genome organisation in the centipede Strigamia maritima.". (2014): http://europepmc.org/abstract/med/25423365.
10.1371/journal.pbio.1002005
- Zhao P; Capella-Gutíerrez S; Shi Y; Zhao X; Chen G; Gabaldón T; Ma XF. "Transcriptomic analysis of a psammophyte food crop,
sand rice (Agriophyllum squarrosum) and identification of candidate genes essential for sand dune adaptation.". (2014): http://europepmc.org/abstract/med/25287394.
- Schwartze VU; Winter S; Shelest E; Marcet-Houben M; Horn F; Wehner S; Linde J; et al. "Gene expansion shapes genome architecture
in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina).".
(2014): http://europepmc.org/abstract/med/25121733.
10.1371/journal.pgen.1004496
- Gabaldón T. "A metabolic scenario for the evolutionary origin of peroxisomes from the endomembranous system.". (2014): http://europepmc.org/abstract/med/23884279.
10.1007/s00018-013-1424-z
- Gabaldón T. "Evolutionary considerations on the origin of peroxisomes from the endoplasmic reticulum, and their relationships
with mitochondria.". (2014): http://europepmc.org/abstract/med/24838097.
10.1007/s00018-014-1640-1
- Sonnhammer E; Gabaldón T; Wilter Sousa da Silva A; Martin M; Robinson-Rechavi M; Boeckmann B; Thomas P; Dessimoz C; the Quest
for Orthologs consortium. "Big Data and Other Challenges in the Quest for Orthologs.". (2014): http://europepmc.org/abstract/med/25064571.
10.1093/bioinformatics/btu492
- Gomariz M; Martínez-García M; Santos F; Rodriguez F; Capella-Gutiérrez S; Gabaldón T; Rosselló-Móra R; Meseguer I; Antón J.
"From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists.".
(2014): http://europepmc.org/abstract/med/24926861.
10.1038/ismej.2014.95
- Schwarzmüller T; Ma B; Hiller E; Istel F; Tscherner M; Brunke S; Ames L; et al. "Systematic phenotyping of a large-scale Candida
glabrata deletion collection reveals novel antifungal tolerance genes.". (2014): http://europepmc.org/abstract/med/24945925.
10.1371/journal.ppat.1004211
- Pryszcz LP; Németh T; Gácser A; Gabaldón T. "Genome comparison of Candida orthopsilosis clinical strains reveals the existence
of hybrids between two distinct subspecies.". (2014): http://europepmc.org/abstract/med/24747362.
10.1093/gbe/evu082
- Capella-Gutierrez S; Kauff F; Gabaldón T. "A phylogenomics approach for selecting robust sets of phylogenetic markers.". (2014):
http://europepmc.org/abstract/med/24476915.
10.1093/nar/gku071
- Supek F; Miñana B; Valcárcel J; Gabaldón T; Lehner B. "Synonymous mutations frequently act as driver mutations in human cancers.".
(2014): http://europepmc.org/abstract/med/24630730.
10.1016/j.cell.2014.01.051
- Dohm JC; Minoche AE; Holtgräwe D; Capella-Gutiérrez S; Zakrzewski F; Tafer H; Rupp O; et al. "The genome of the recently domesticated
crop plant sugar beet (Beta vulgaris).". (2014): http://europepmc.org/abstract/med/24352233.
10.1038/nature12817
- Hatzihristidis T; Liu S; Pryszcz L; Hutchins AP; Gabaldón T; Tremblay ML; Miranda-Saavedra D. "PTP-central: a comprehensive
resource of protein tyrosine phosphatases in eukaryotic genomes.". (2014): http://europepmc.org/abstract/med/23911837.
10.1016/j.ymeth.2013.07.031
- Powell S; Forslund K; Szklarczyk D; Trachana K; Roth A; Huerta-Cepas J; Gabaldón T; et al. "eggNOG v4.0: nested orthology
inference across 3686 organisms.". (2014): http://europepmc.org/abstract/med/24297252.
10.1093/nar/gkt1253
- Hinojosa-Alvarez S; Díaz-Jaimes P; Marcet-Houben M; Gabaldón T. "The complete mitochondrial genome of the Giant Manta ray,
Manta birostris.". (2014): http://europepmc.org/abstract/med/24409907.
10.3109/19401736.2013.855753
- Huerta-Cepas J; Capella-Gutiérrez S; Pryszcz LP; Marcet-Houben M; Gabaldón T. "PhylomeDB v4: zooming into the plurality of
evolutionary histories of a genome.". (2014): http://europepmc.org/abstract/med/24275491.
10.1093/nar/gkt1177
- Krisko A; Copic T; Gabaldón T; Lehner B; Supek F. "Inferring gene function from evolutionary change in signatures of translation
efficiency.". (2014): http://europepmc.org/abstract/med/24580753.
10.1186/gb-2014-15-3-r44
- Aguileta G; de Vienne DM; Ross ON; Hood ME; Giraud T; Petit E; Gabaldón T. "High variability of mitochondrial gene order among
fungi.". (2014): http://europepmc.org/abstract/med/24504088.
10.1093/gbe/evu028
- Kunze G; Gaillardin C; Czernicka M; Durrens P; Martin T; Böer E; Gabaldón T; et al. "The complete genome of Blastobotrys (Arxula)
adeninivorans LS3 - a yeast of biotechnological interest.". (2014): http://europepmc.org/abstract/med/24834124.
10.1186/1754-6834-7-66
- Galindo-Moreno J; Iurlaro R; El Mjiyad N; Díez-Pérez J; Gabaldón T; Muñoz-Pinedo C. "Apolipoprotein L2 contains a BH3-like
domain but it does not behave as a BH3-only protein.". (2014): http://europepmc.org/abstract/med/24901046.
10.1038/cddis.2014.237
- Castanera R; Pérez G; López L; Sancho R; Santoyo F; Alfaro M; Gabaldón T; et al. "Highly expressed captured genes and cross-kingdom
domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi.". (2014): http://europepmc.org/abstract/med/25480150.
10.1186/1471-2164-15-1071
- Lysøe E; Harris LJ; Walkowiak S; Subramaniam R; Divon HH; Riiser ES; Llorens C; et al. "The genome of the generalist plant
pathogen Fusarium avenaceum is enriched with genes involved in redox, signaling and secondary metabolism.". (2014): http://europepmc.org/abstract/med/25409087.
10.1371/journal.pone.0112703
- Lavín JL; Marcet-Houben M; Gutiérrez-Vázquez RL; Ramírez L; Pisabarro AG; Gabaldón T; Oguiza JA. "FUNGALOXPHOS: an integrated
database for oxidative phosphorylation in fungi.". (2013): http://europepmc.org/abstract/med/23628689.
10.1016/j.mito.2013.04.009
- Gabaldón T; Koonin EV. "Functional and evolutionary implications of gene orthology.". (2013): http://europepmc.org/abstract/med/23552219.
10.1038/nrg3456
- Capella-Gutiérrez S; Gabaldón T. "Measuring guide-tree dependency of inferred gaps in progressive aligners.". (2013): http://europepmc.org/abstract/med/23435067.
10.1093/bioinformatics/btt095
- Mohd-Padil H; Mohd-Adnan A; Gabaldón T. "Phylogenetic analyses uncover a novel clade of transferrin in nonmammalian vertebrates.".
(2013): http://europepmc.org/abstract/med/23258311.
10.1093/molbev/mss325
- Collén J; Porcel B; Carré W; Ball SG; Chaparro C; Tonon T; Barbeyron T; et al. "Genome structure and metabolic features in
the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.". (2013): http://europepmc.org/abstract/med/23503846.
10.1073/pnas.1221259110
- Hagen F; Ceresini PC; Polacheck I; Ma H; van Nieuwerburgh F; Gabaldón T; Kagan S; et al. "Ancient dispersal of the human fungal
pathogen Cryptococcus gattii from the Amazon rainforest.". (2013): http://europepmc.org/abstract/med/23940707.
10.1371/journal.pone.0071148
- Gabaldón T; Martin T; Marcet-Houben M; Durrens P; Bolotin-Fukuhara M; Lespinet O; Arnaise S; et al. "Comparative genomics
of emerging pathogens in the Candida glabrata clade.". (2013): http://europepmc.org/abstract/med/24034898.
10.1186/1471-2164-14-623
- Jiménez-Guri E; Huerta-Cepas J; Cozzuto L; Wotton KR; Kang H; Himmelbauer H; Roma G; Gabaldón T; Jaeger J. "Comparative transcriptomics
of early dipteran development.". (2013): http://europepmc.org/abstract/med/23432914.
10.1186/1471-2164-14-123
- Pryszcz LP; Németh T; Gácser A; Gabaldón T. "Unexpected genomic variability in clinical and environmental strains of the pathogenic
yeast Candida parapsilosis.". (2013): http://europepmc.org/abstract/med/24259314.
10.1093/gbe/evt185
- Ferreira PG; Patalano S; Chauhan R; Ffrench-Constant R; Gabaldón T; Guigó R; Sumner S. "Transcriptome analyses of primitively
eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes.". (2013): http://europepmc.org/abstract/med/23442883.
10.1186/gb-2013-14-2-r20
- Silva, L.L.; Marcet-Houben, M.; Nahum, L.A.; Zerlotini, A.; Gabaldón, T.; Oliveira, G.. "The Schistosoma mansoni phylome:
Using evolutionary genomics to gain insight into a parasite's biology". BMC Genomics (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84868634147&partnerID=MN8TOARS.
- Bohle, H.M.; Gabaldón, T.. "Selection of marker genes using whole-genome DNA polymorphism analysis". Evolutionary Bioinformatics
2012 8 (2012): 161-169. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859465148&partnerID=MN8TOARS.
- Miranda-Saavedra, D.; Gabaldón, T.; Barton, G.J.; Langsley, G.; Doerig, C.. "The kinomes of apicomplexan parasites". Microbes
and Infection 14 10 (2012): 796-810. http://www.scopus.com/inward/record.url?eid=2-s2.0-84863828202&partnerID=MN8TOARS.
- Dessimoz, C.; Gabaldón, T.; Roos, D.S.; Sonnhammer, E.L.L.; Herrero, J.; Altenhoff, A.; Apweiler, R.; et al. "Toward community
standards in the quest for orthologs". Bioinformatics 28 6 (2012): 900-904. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859038699&partnerID=MN8TOARS.
- Piškur, J.; Ling, Z.; Marcet-Houben, M.; Ishchuk, O.P.; Aerts, A.; LaButti, K.; Copeland, A.; et al. "The genome of wine yeast
Dekkera bruxellensis provides a tool to explore its food-related properties". International Journal of Food Microbiology
157 2 (2012): 202-209. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862840690&partnerID=MN8TOARS.
- Garcia-Mas, J.; Benjak, A.; Sanseverino, W.; Bourgeois, M.; Mir, G.; Gonzalez, V.M.; Henaff, E.; et al. "The genome of melon
(Cucumis melo L.)". Proceedings of the National Academy of Sciences of the United States of America 109 29 (2012):
11872-11877. http://www.scopus.com/inward/record.url?eid=2-s2.0-84863888434&partnerID=MN8TOARS.
- Capella-Gutiérrez, S.; Marcet-Houben, M.; Gabaldón, T.. "Phylogenomics supports microsporidia as the earliest diverging clade
of sequenced fungi". BMC Biology 10 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84863210484&partnerID=MN8TOARS.
- Valach, M.; Pryszcz, L.P.; Tomaska, L.; Gacser, A.; Gabaldón, T.; Nosek, J.. "Mitochondrial genome variability within the
Candida parapsilosis species complex". Mitochondrion 12 5 (2012): 514-519. http://www.scopus.com/inward/record.url?eid=2-s2.0-84864776817&partnerID=MN8TOARS.
- Marcet-Houben, M.; Ballester, A.-R.; Fuente, B.; Harries, E.; Marcos, J.F.; González-Candelas, L.; Gabaldón, T.. "Genome sequence
of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus". BMC Genomics (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84869233554&partnerID=MN8TOARS.
- Lee, J.-H.; Wan, K.-L.; Mohd-Adnan, A.; Gabaldón, T.. "Evolution of the ferritin family in vertebrates". Trends in Evolutionary
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- Bohle HM; Gabaldón T. "Selection of marker genes using whole-genome DNA polymorphism analysis.". (2012): http://europepmc.org/abstract/med/22474405.
10.4137/EBO.S8989
- Ollivier, M.; Gabaldón, T.; Poulain, J.; Gavory, F.; Leterme, N.; Gauthier, J.-P.; Legeai, F.; et al. "Comparison of gene
repertoires and patterns of evolutionary rates in eight aphid species that differ by reproductive mode". Genome Biology
and Evolution 4 2 (2012): 155-167. http://www.scopus.com/inward/record.url?eid=2-s2.0-84865831413&partnerID=MN8TOARS.
- Ollivier, M.. "Comparison of Gene Repertoires and Patterns of Evolutionary Rates in Eight Aphid Species That Differ by Reproductive
Mode". Genome Biology and Evolution 4 2 (2012): 155-167.
10.1093/gbe/evr140
- Silva LL; Marcet-Houben M; Zerlotini A; Gabaldón T; Oliveira G; Nahum LA. "Evolutionary histories of expanded peptidase families
in Schistosoma mansoni.". (2011): http://europepmc.org/abstract/med/22124560.
- Huerta-Cepas J; Dopazo J; Huynen MA; Gabaldón T. "Evidence for short-time divergence and long-time conservation of tissue-specific
expression after gene duplication.". (2011): http://europepmc.org/abstract/med/21515902.
10.1093/bib/bbr022
- Marcet-Houben M; Gabaldón T. "TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees.". (2011): http://europepmc.org/abstract/med/21335609.
10.1093/nar/gkr087
- Marcet-Houben, M.; Gabaldón, T.. "TreeKO: A duplication-aware algorithm for the comparison of phylogenetic trees". Nucleic
Acids Research 39 10 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79961206352&partnerID=MN8TOARS.
- Roetzer, A.; Klopf, E.; Gratz, N.; Marcet-Houben, M.; Hiller, E.; Rupp, S.; Gabaldón, T.; Kovarik, P.; Schüller, C.. "Regulation
of Candida glabrata oxidative stress resistance is adapted to host environment". FEBS Letters 585 2 (2011): 319-327.
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web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing". Nucleic Acids Research 39
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- Huerta-Cepas, J.; Capella-Gutierrez, S.; Pryszcz, L.P.; Denisov, I.; Kormes, D.; Marcet-Houben, M.; Gabaldón, T.. "PhylomeDB
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