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ALEXANDRE RAFAEL MACHADO OLIVEIRA. Concluiu o(a) Mestrado integrado em Bioinformática em 2019/12/10 pelo(a) Universidade do Minho e Licenciatura em Biologia Aplicada em 2017/07/10 pelo(a) Universidade do Minho. Atua na(s) área(s) de Ciências Exatas com ênfase em Ciências da Computação e da Informação com ênfase em Bioinformática.
Identification

Personal identification

Full name
Alexandre Rafael Machado Oliveira

Citation names

  • OLIVEIRA, ALEXANDRE

Author identifiers

Ciência ID
911C-D6A4-580D
ORCID iD
0000-0002-2255-8983

Email addresses

  • alexandre36285@gmail.com (Professional)

Websites

Knowledge fields

  • Exact Sciences - Computer and Information Sciences - Bioinformatics

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Proficiency (C2) Advanced (C1) Proficiency (C2) Advanced (C1)
French Proficiency (C2) Proficiency (C2) Advanced (C1) Proficiency (C2) Advanced (C1)
Education
Degree Classification
2021 - 2025
Ongoing
 Engenharia Biomédica (Doutoramento)
Major in Bioinformática e Biologia de Sistemas
Universidade do Minho, Portugal
"A Systems Biology approach to model COVID19 phenotypes and drive drug discovery" (THESIS/DISSERTATION)
2017/09 - 2019/12/10
Concluded
 Bioinformática (Mestrado integrado)
Universidade do Minho, Portugal
"A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli" (THESIS/DISSERTATION)
 16
2014/09/10 - 2017/07/10
Concluded
 Biologia Aplicada (Licenciatura)
Universidade do Minho, Portugal
 14
Outputs

Publications

Book chapter
  1. Alexandre Oliveira; Emanuel Cunha; Miguel Silva; Cristiana Faria; Oscar Dias. "Exploring Xylella fastidiosa’s Metabolic Traits Using a GSM Model of the Phytopathogenic Bacterium". 2023.
    10.1007/978-3-031-17024-9_8
Conference paper
  1. OLIVEIRA, ALEXANDRE; Cunha, Emanuel; Cruz, Fernando; Capela, João; Sequeira, João C.; Sampaio, Marta; Óscar Dias. Corresponding author: Óscar Dias. "Towards a multivariate analysis of genome-scale metabolic models derived from the BiGG models database". Paper presented in PACBB 2021, Salamanca, 2021.
    Published
Conference poster
  1. OLIVEIRA, ALEXANDRE; Rodrigues, Joana L.; Rodrigues, Lígia R.; Dias, Oscar. "A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli". Paper presented in VIII Bioinformatics Open Days, 2019.
Journal article
  1. Alexandre Oliveira; Miguel Rocha; Oscar Dias. "Metabolic modelling reveals key pathways in COVID-19 in an effort to drive drug purposing". IFAC-PapersOnLine (2024): http://dx.doi.org/10.1016/j.ifacol.2024.10.016.
    10.1016/j.ifacol.2024.10.016
  2. Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João C. Sequeira; Marta Sampaio; Cláudia Sampaio; Oscar Dias. "Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool". Journal of Integrative Bioinformatics (2022): https://doi.org/10.1515/jib-2022-0014.
    10.1515/jib-2022-0014
  3. Oliveira, Alexandre; Rodrigues, Joana; Ferreira, Eugénio Campos; Rodrigues, Lígia; Dias, Oscar. "A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli". PLOS Computational Biology 17 3 (2021): e1008704. http://dx.doi.org/10.1371/journal.pcbi.1008704.
    10.1371/journal.pcbi.1008704

Other

Other output
  1. TROPPO: Tissue-specific RecOnstruction and Phenotype Prediction using Omics data. 2025. Alexandre Oliveira; Jorge Ferreira; Vitor Vieira; Bruno Sá; Miguel Rocha. https://doi.org/10.1093/bioadv/vbaf113.
    10.1093/bioadv/vbaf113
Activities

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2018/10/01 - 2019/02/28 Head of the Promotion Department of the VIII Bioinformatics Open Days (2019/02/20 - 2019/02/22)
Conference (Member of the Organising Committee)
 Universidade do Minho, Portugal
2016/09/01 - 2017/02/28 Head of the Organizing Committee of the XVIII Jornadas de Biologia Aplicada (2017/02/08 - 2017/02/10)
Conference (President of the Organising Committee)
 Universidade do Minho, Portugal

Event participation

Activity description
Type of event 		Event name
Institution / Organization
2020/02/19 - 2020/02/21 BOD 2020 - IX Bioinformatics Open Days
Conference
Universidade do Minho, Portugal
2018/02/14 - 2018/02/16 BOD 2018 - VII Bioinformatics Open Days
Conference
Universidade do Minho, Portugal
2015/03/27 - 2015/03/31 ENEB 2015 - XVIII Encontro Nacional de Estudantes de Biologia
Conference
Universidade do Minho, Portugal