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Fábio André da Costa Lopes. Completed the Mestrado integrado in Engenharia Biomédica in 2019/07/16 by Universidade de Coimbra Faculdade de Ciencias e Tecnologia. Attends the Doutoramento in Engenharia Informática by Universidade de Coimbra Departamento de Engenharia Informática since 2019/10/07. Published 12 articles in journals. Organized 1 event(s). Participated in 1 event(s). Has received 6 awards and/or honors. Participates and/or participated as Research Fellow in 1 project(s). Works in the area(s) of Engineering and Technology with emphasis on Medical Engineering. In his curriculum Ciência Vitae the most frequent terms in the context of scientific, technological and artistic-cultural output are: Bioinformática; Aprendizagem Computacional; Processamento de Linguagem Natural; Aprendizagem Profunda; Base de Dados; Processamento de Sinal; Robótica; Arduino; Automação; .
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Identification

Personal identification

Full name
Fábio André da Costa Lopes

Citation names

  • Lopes, Fábio

Author identifiers

Ciência ID
4D12-0E78-61AB
ORCID iD
0000-0003-2919-5959

Email addresses

  • fadcl@dei.uc.pt (Professional)
  • fabioacl96@gmail.com (Personal)

Addresses

  • Rua Central, 57B, 5000-102, Bustelo, Vila Real, Portugal (Personal)

Websites

  • www.linkedin.com/in/fábio-lopes-2493771b0 (Social media)

Knowledge fields

  • Engineering and Technology - Medical Engineering

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Upper intermediate (B2) Advanced (C1) Upper intermediate (B2) Advanced (C1) Advanced (C1)
German Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2)
Education
Degree Classification
2019/10/07 - 2023/11/30
Ongoing
 Engenharia Informática (Doutoramento)
Major in Ciência de Dados
Universidade de Coimbra Departamento de Engenharia Informática, Portugal
"Towards Adaptive Seizure Prediction using Automatic Electroencephalogram Denoising and Deep Learning Approaches" (THESIS/DISSERTATION)
2020/02/13 - 2020/06/22
Concluded
 Curso de Formação de Língua e Cultura Alemãs VI (Outros)
Universidade de Coimbra Centro de Estudos de Linguística Geral e Aplicada, Portugal
 15
2019/08/30 - 2020/01/16
Concluded
 Curso de Formação de Língua e Cultura Alemãs V (Outros)
Universidade de Coimbra Centro de Estudos de Linguística Geral e Aplicada, Portugal
 15
2014/09/25 - 2019/07/16
Concluded
 Engenharia Biomédica (Mestrado integrado)
Major in Informática Clínica e Bioinformática
Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
"Contributions to Clinical Information Extraction in Portuguese: Corpora, Named Entity Recognition, Word Embeddings" (THESIS/DISSERTATION)
 18
2019/01/28 - 2019/06/12
Concluded
 Curso de Formação de Língua e Cultura Alemãs IV (Outros)
Universidade de Coimbra Centro de Estudos de Linguística Geral e Aplicada, Portugal
 16
2018/08/30 - 2019/01/17
Concluded
 Curso de Formação de Língua e Cultura Alemãs III (Outros)
Universidade de Coimbra Centro de Estudos de Linguística Geral e Aplicada, Portugal
 15
2018 - 2018/07
Concluded
 Cambridge English Level 1 Certificate in ESOL International (First) (Outros)
Cambridge English Language Assessment Portugal, Portugal
 C
2016 - 2018
Concluded
 Curso de Inglês Geral (Outros)
Wall Street English, Portugal
Affiliation

Science

Category
Host institution 		Employer
2021/10/01 - 2023/09/30 Visiting Researcher (Research) Universitätsklinikum Freiburg Neurozentrum, Germany
2019/10/01 - 2023/09/30 Researcher (Research) Universidade de Coimbra Centro de Informatica e Sistemas, Portugal
Universidade de Coimbra Centro de Informatica e Sistemas, Portugal
Projects

Contract

Designation Funders
2021/01 - 2023/12 Towards Realistic Epileptic Seizure Prediction: dealing with long-term concept drifts and data-labeling uncertainty RECoD
Provided by PTCRIS: PTDC/EEI-EEE/5788/2020
 Fundação para a Ciência e a Tecnologia
2019/10/01 - 2020/09/30 WELMO: Wearable Electronics for Effective Lung Monitoring
H2020-825572
Research Fellow
Universidade de Coimbra Centro de Informatica e Sistemas, Portugal
Ongoing
Outputs

Publications

Conference paper
  1. Lopes, Fábio; Teixeira, César; Gonçalo Oliveira, Hugo. "Named Entity Recognition in Portuguese Neurology Text Using CRF". Paper presented in 19th EPIA Conference on Artificial Intelligence, Vila Real, 2019.
    Published • 10.1007/978-3-030-30241-2_29
  2. Lopes, Fábio; Teixeira, César; Gonçalo Oliveira, Hugo. "Contributions to Clinical Named Entity Recognition in Portuguese". Paper presented in 18th BioNLP Workshop and Shared Task, Florença, 2019.
    Published • 10.18653/v1/w19-5024
Conference poster
  1. Lopes, Fábio; Leal, Adriana; Pinto, Mauro; Dourado, António; Schulze-Bonhage, Andreas; Dümpelmann, Matthias; Cesar A. Teixeira. "Transfer learning on seizure prediction: Does information from several patients improve patient-specific approaches?". Paper presented in 4th International Congress on Mobile Health and Digital Technology in Epilepsy (MHDTE2023), 2023.
  2. Lopes, Fábio; Leal, Adriana; Pinto, Mauro; Dourado, António; Schulze-Bonhage, Andreas; Dümpelmann, Matthias; Cesar A. Teixeira. "Evaluating the Influence of Retraining Seizure Prediction Models over Time". Paper presented in International Conference for Technology and Analysis of Seizures (ICTALS2022), 2022.
  3. Lopes, Fábio; Leal, Adriana; Pinto, Mauro; Dourado, António; Dümpelmann, Matthias; Cesar A. Teixeira. "Long-term EEG Artifact Removal in Real-time". Paper presented in 33º Encontro Nacional de Epileptologia (ENE) – CONGRESSO VIRTUAL DA Liga Portuguesa Contra a Epilepsia (LPCE), 2021.
Journal article
  1. Pinto, Mauro F.; Batista, Joana; Leal, Adriana; Lopes, Fábio; Oliveira, Ana; Dourado, António; Abuhaiba, Sulaiman I.; et al. "The goal of explaining black boxes in EEG seizure prediction is not to explain models' decisions". Epilepsia Open 8 2 (2023): 285-297. http://dx.doi.org/10.1002/epi4.12748.
    10.1002/epi4.12748
  2. Lopes, Fábio; Leal, Adriana; Pinto, Mauro F.; Dourado, António; Schulze-Bonhage, Andreas; Dümpelmann, Matthias; Teixeira, César. "Removing artefacts and periodically retraining improve performance of neural network-based seizure prediction models". Scientific Reports 13 1 (2023): http://dx.doi.org/10.1038/s41598-023-30864-w.
    10.1038/s41598-023-30864-w
  3. Leal, Adriana; Curty, Juliana; Lopes, Fábio; Pinto, Mauro F.; Oliveira, Ana; Sales, Francisco; Bianchi, Anna M.; et al. "Unsupervised EEG preictal interval identification in patients with drug-resistant epilepsy". Scientific Reports 13 1 (2023): http://dx.doi.org/10.1038/s41598-022-23902-6.
    10.1038/s41598-022-23902-6
  4. Lopes, Fábio; Leal, Adriana; Medeiros, Júlio; Pinto, Mauro F.; Dourado, António; Dümpelmann, Matthias; Teixeira, César. "EPIC: Annotated epileptic EEG independent components for artifact reduction". Scientific Data 9 1 (2022): http://dx.doi.org/10.1038/s41597-022-01524-x.
    10.1038/s41597-022-01524-x
  5. Pinto, Mauro. F.; Leal, Adriana; Lopes, Fábio; Pais, José; Dourado, António; Sales, Francisco; Martins, Pedro; Teixeira, César A.. "On the clinical acceptance of black-box systems for EEG seizure prediction". Epilepsia Open 7 2 (2022): 247-259. http://dx.doi.org/10.1002/epi4.12597.
    10.1002/epi4.12597
  6. Pinto, Mauro; Coelho, Tiago; Leal, Adriana; Lopes, Fábio; Dourado, António; Martins, Pedro; Teixeira, César. "Interpretable EEG seizure prediction using a multiobjective evolutionary algorithm". Scientific Reports 12 1 (2022): http://dx.doi.org/10.1038/s41598-022-08322-w.
    10.1038/s41598-022-08322-w
  7. Lopes, Fabio; Leal, Adriana; Medeiros, Julio; Pinto, Mauro F.; Dourado, Antonio; Dumpelmann, Matthias; Teixeira, Cesar. "Ensemble Deep Neural Network for Automatic Classification of EEG Independent Components". IEEE Transactions on Neural Systems and Rehabilitation Engineering 30 (2022): 559-568. http://dx.doi.org/10.1109/tnsre.2022.3154891.
    10.1109/tnsre.2022.3154891
  8. Leal, Adriana; Pinto, Mauro F.; Lopes, Fábio; Bianchi, Anna M.; Henriques, Jorge; Ruano, Maria G.; de Carvalho, Paulo; Dourado, António; Teixeira, César A.. "Heart rate variability analysis for the identification of the preictal interval in patients with drug-resistant epilepsy". Scientific Reports 11 1 (2021): http://dx.doi.org/10.1038/s41598-021-85350-y.
    10.1038/s41598-021-85350-y
  9. Pinto, Mauro. F.; Leal, Adriana; Lopes, Fábio; Dourado, António; Martins, Pedro; Teixeira, César A.. "A personalized and evolutionary algorithm for interpretable EEG epilepsy seizure prediction". Scientific Reports 11 1 (2021): http://dx.doi.org/10.1038/s41598-021-82828-7.
    10.1038/s41598-021-82828-7
  10. Lopes, Fabio; Leal, Adriana; Medeiros, Julio; Pinto, Mauro F.; Dourado, Antonio; Dumpelmann, Matthias; Teixeira, Cesar. "Automatic Electroencephalogram Artifact Removal Using Deep Convolutional Neural Networks". IEEE Access 9 (2021): 149955-149970. http://dx.doi.org/10.1109/access.2021.3125728.
    10.1109/access.2021.3125728
  11. Lopes, Fábio; Teixeira, César; Gonçalo Oliveira, Hugo. "Comparing Different Methods for Named Entity Recognition in Portuguese Neurology Text". Journal of Medical Systems 44 4 (2020): http://dx.doi.org/10.1007/s10916-020-1542-8.
    10.1007/s10916-020-1542-8
  12. Lopes, Fábio; Agnelo, João; Teixeira, César A.; Laranjeiro, Nuno; Bernardino, Jorge. "Automating orthogonal defect classification using machine learning algorithms". Future Generation Computer Systems 102 (2020): 932-947. http://dx.doi.org/10.1016/j.future.2019.09.009.
    Published • 10.1016/j.future.2019.09.009
Activities

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2019/09/26 - 2019/09/28 Volunteer at the MEDICON 2019, 15th Mediterranean Conference on Medical and Biological Engineering and Computing. (2019/09/26 - 2019/09/28)
Conference (Other)
 Universidade de Coimbra, Portugal

Event participation

Activity description
Type of event 		Event name
Institution / Organization
2018/04/19 - 2018/04/20 World Health Summit Regional Meeting 2018 was a meeting where the health of low and middle-income countries was discussed. Moreover, new biomedical engineer approaches were presented.
Congress
 World Health Summit Regional Meeting 2018
Universidade de Coimbra, Portugal

Hospitais da Universidade de Coimbra, Portugal
Distinctions

Award

2020 Honorable Mention MSc Dissertation in PROPOR 2020
2020 3% Best Students Award in the academic year 2018/2019
Universidade de Coimbra, Portugal
2019 3% Best Students Award in the academic year 2017/2018
Universidade de Coimbra, Portugal
2019 Honorable Mention MSc Dissertation in RECPAD 2019
2018 3% Best Students Award in the academic year 2016/2017
Universidade de Coimbra, Portugal
2018 Third Place in BotOlympics
Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal