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Filipe José Oliveira Costa (FC). Graduated in Marine Biology and completed MSc in Marine Ecology. His PhD was awarded in 2002 by Univ. Nova de Lisboa. He carried out postdoctoral research at Texas Tech University, USA (2003), at the Univ. of Guelph, Canada, between 2003 and 2005, and subsequently was granted a Marie Curie Fellowship at Bangor University, UK (2006-2007). He was awarded a Marie Curie Reintegration Grant in 2008, upon appointment as faculty at the Univ. of Minho, Portugal, where he currently serves as Associate Professor, and leads a research group within CBMA.___ His research work involves the use of molecular markers for biodiversity research, in particular (e)DNA (meta)barcoding, to investigate marine biodiversity, ecology, and evolution, as well as the employment of DNA-based tools in marine monitoring, bioassessment and conservation.___ In 2003, FC joined the pioneering team on DNA barcoding at the University of Guelph, and since made pivotal scientific contributions to the field, including first authorship of the proof-of-concept study on Crustaceans [76], perspective and conceptual insights [69, 74] and benchmarking studies [e.g. ,54,59,67,70]. Through is pioneering work in DNA barcoding of marine life in Portugal and in Europe in general, he contributed to generate the backbone of a key scientific resource (in the form of publicly accessible reference libraries), and also extensive baseline data on the genetic diversity of marine organisms. Indeed, his studies helped to unravel extensive undescribed diversity and shedding new light into patterns of diversification, genetic structure and evolution of marine organisms [e.g. 11, 13, 40, 41, 42]. FC was also involved in key technical progresses, such as designing the successful Lobo primers [63], and among the first to propose ranking systems for reference libraries [66, see also 17], that ultimately led to the creation of software for automated auditing [BAGS, 29].___Pivotal contributions to the development and application of DNA metabarcoding, include benchmark studies on marine invertebrates [5,7,16,47,48], plus studies on meiofauna, including network analysis [19,32,33], as well as applications to ichthyoplankton and fish eDNA for supporting fisheries management and conservation (ongoing grants). Recognition of the reach and impact of FC´s research is patent in his role as Chair of the European branch of FISH-BOL, and as Portugal representative in large-scale international consortia, such as the International Barcode of Life (iBOL) and the COST Action DNAqua-Net. Joined the Ocean Biomolecular Observing Network (OBON) since 2022. Over the last 15 years was the Principal Investigator (PI) in 6 FCT grants (1 as co-PI), including 2 ongoing which involve Brazil, Cabo Verde and Guinea-Bissau, that were endorsed by UN Ocean Decade. He participated in multiple R&D projects, in most of them leading tasks [e.g. ATLANTIDA, R2O, K2D, NEXT-SEA]. Further recognition is expressed by chairing of international conferences (ECBOL2, 15th ICA), participation in international conference committees, invitation to lectures in international courses, to plenary talks in scientific events, and as expert in scientific workshops, among other.___He supervised 13 PDFs (3 ongoing), 12 PhDs (8 concluded) and 12 MSc (all concluded). FC co-authored >80 peer-reviewed articles and book-chapters, about 50% of which as first or last author, with a co-author network of 375 researchers from 50+ countries. He serves in the Editorial Board of the journals Scientific Reports (since 2014) and Metabarcoding and Metagenomics (since 2016). In 2020, he received from FCT a Prize for Scientific Research and Technological Development and, in 2022, was awarded a Prize for Recognition of the Impact of Scientific Research, by the School of Sciences of the UMinho.
Identificação

Identificação pessoal

Nome completo
Filipe José Oliveira Costa

Nomes de citação

  • Costa, Filipe
  • Filipe O. Costa
  • Filipe Oliveira Costa

Identificadores de autor

Ciência ID
7318-9608-6D8C
ORCID iD
0000-0001-5398-3942
Google Scholar ID
https://scholar.google.com/citations?hl=en&user=HEjsbcIAAAAJ
Researcher Id
B-5890-2009
Scopus Author Id
7201976261

Websites

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Biologia Marinha
Formação
Grau Classificação
1998 - 2002
Concluído
PhD (Doutoramento)
Especialização em Ciências do Ambiente
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
"Integrated research on ecology, genetics and ecotoxicology of Gammarus locusta (L.): the model organism approach" (TESE/DISSERTAÇÃO)
Unanimous approval
1997
Concluído
Ecologia, Gestão e Modelação de Recursos Marinhos (Mestrado)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
"Gammarus locusta (L.) (Crustacea) in ecotoxicological testing: ecology, laboratory culturing and sensitivity to non-contaminant variables." (TESE/DISSERTAÇÃO)
Muito Bom / Very good
1993
Concluído
Biologia Marinha e Pescas (Licenciatura)
Universidade do Algarve, Portugal
"Screening of oestrogenicity of xenobiotics based in competition studies for oestradiol receptor of rainbow trout Oncorhynchus mykiss" (TESE/DISSERTAÇÃO)
Bom / Good
Percurso profissional

Docência no Ensino Superior

Categoria Profissional
Instituição de acolhimento
Empregador
2019/05 - Atual Professor Associado (Docente Universitário) Universidade do Minho, Portugal
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2008/01/02 - 2019 Professor Auxiliar (Docente Universitário) Universidade do Minho, Portugal
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Cargos e Funções

Categoria Profissional
Instituição de acolhimento
Empregador
2016/09/01 - 2018/09/01 Director of the Applied Biology degree Universidade do Minho, Portugal
Universidade do Minho, Portugal

Outros

Categoria Profissional
Instituição de acolhimento
Empregador
2006/01/01 - 2007/12/31 Marie Curie Fellow / Senior Research Fellow Bangor University, Reino Unido
2003/09/22 - 2004/12/15 Postdoctoral Researcher University of Guelph, Canadá
2003/02/01 - 2003/08/31 Postdoctoral Researcher Texas Tech University, Estados Unidos
2000/05/01 - 2000/08/31 Visiting PhD student Texas A&M University Department of Biology, Estados Unidos
1999/05/01 - 1999/06/30 Visiting PhD student Texas A&M University Department of Biology, Estados Unidos
Projetos

Bolsa

Designação Financiadores
2021/04 - Atual Exploring the use of environmental DNA to monitor the ichthyofauna and provide data to assist fish stock assessment in the Atlantic
UMINHO/BID/2021/36
Orientador
Universidade do Minho Departamento de Biologia, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2020/12/01 - Atual Meta-species screening for genetic divergence and phylogeographic reconstruction in Atlantic marine fish species
UI/BD/1509102021
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2020/10/01 - Atual DNA-based monitoring of ichthyoplankton for application to fish biodiversity conservation and fisheries management
DFA/BD/6653/2020
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2020/10/01 - Atual Optimization of DNA metabarcoding for the early detection and improved monitoring of non-indigenous species (NIS) in Portuguese coastal ecosystems
UI/BD/150871/2021
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
2017/10/01 - 2022/09/06 Phyllodocida (Annelida, Polychaeta) of the North East Atlantic as model for the investigation of cryptic species
SFRH/BD/131527/2017
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2017 - 2021 Development of a metabarcoding approach for investigating the coupled dynamics of estuarine meio - and macrobenthic communities
PD/BD/113547/2015
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2016 - 2020 Monitoring coastal benthic colonization of artificial substrates with the support of DNA metabarcoding approaches
PD/BD/127994/2016
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2016 - 2019 Metabarcoding of meio- and macrobenthic estuarine communities: performance assessment and implementation in monitoring programmes
SFRH/BPD/109842/2015
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2013/10/01 - 2018 GENOMIC PHYLOGEOGRAPHY AND DEMOGRAPHIC HISTORY OF THE IBERIAN HONEYBEE (APIS MELLIFERA IBERIENSIS)
SFRH/BD/841952/2012/PT
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2013/03/01 - 2018 ASSOCIATIONS BETWEEN GENETIC AND COMMUNITY DIVERSITY IN NORTHEAST ATLANTIC ROCKY SHORE ENVIRONMENTS: THE CASE OF THE PERACARIDS
SFRH/BD/865362/2012
Orientador
Universidade de Aveiro, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2011/10/01 - 2016 POPULATION GENOMICS AND LANDSCAPE GENETICS OF THE IBERIAN HONEY BEE (APIS MELLIFERA IBERIENSIS)
FCT/SFRH/BD/686822/2010/PT
Orientador
Universidade do Minho, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2011/10/01 - 2016 MOLECULAR BIODIVERSITY AND ADVANCED MONITORING TOOLS FOR MACROBENTHIC COMMUNITIES OF PORTUGUESE COASTAL ECOSYSTEMS
SFRH/BD/69750/2010/PT
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2010/03/01 - 2015 PHYLOGENY, PHYLOGEOGRAPHY AND ONTOGENY OF THE WORLDWIDE DISTRIBUTED SHRIMP GENUS PLESIONIKA: CONTRASTING MOLECULAR AND MORPHOLOGY-BASED APPROACHES
SFRH/BPD/63888/2009/PT
Orientador
Instituto Português do Mar e da Atmosfera, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2009/01/01 - 2015 MOLECULAR BIODIVERSITY AND META-SPECIES PHYLOGEOGRAPHY OF FISH FROM THE NE ATLANTIC AND MEDITERRANEAN
SFRH/BPD/45246/2008/PT
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2007/07/01 - 2013 BIODIVERSITY AND EVOLUTION OF BROWN SEAWEEDS FROM PORTUGUESE WATERS AND ADJACENT OCEANOGRAPHIC REGIONS
SFRH/BPD/34246/2006/PT
Orientador
Universidade dos Açores, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2006/01/01 - 2012 BIODIVERSIDADE E EVOLUÇÃO MOLECULAR DE CRUSTÁCEOS EM ECOSSISTEMAS BATIAIS DA MARGEM PORTUGUESA
SFRH/BD/25568/2005/PT
Orientador
Universidade de Aveiro, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2006 - 2007 EUROFISHCODE - DNA barcodes for species identification of Fish and Shellfish in Europe: implementation and application in selected case-studies
Investigador
Bangor University, Reino Unido
European Commission
Concluído
2003 - 2005 Development of methodologies for monitoring genotoxicity and genotypic diversity in ecosystems of the Portuguese coast
SFRH/BPD/11588/2002
Bolseiro de Pós-Doutoramento
Instituto do Mar, Portugal

University of Guelph, Canadá

Texas Tech University, Estados Unidos
Fundação para a Ciência e a Tecnologia
Concluído

Projeto

Designação Financiadores
2023/06/01 - Atual eDNAqua-plan: A Plan towards an eDNA reference library and data repository for Aquatic Organisms, navigating Europe towards the next generation biodiversity monitoring
HORIZON-MISS-2022-OCEAN-01ID101112800
Investigador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Horizon 2020
Em curso
2023/01/02 - Atual Blue Bioeconomy Innovation Pact - Vertical Fish
Investigador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Agência para a Competitividade e Inovação IP
Em curso
2023/01/01 - Atual Blue Bioeconomy Innovation Pact - Vertical Algae
Investigador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Agência para a Competitividade e Inovação IP
Em curso
2019/06/16 - Atual BIOSCAN- Revealing species, their interactions and dynamics
Investigador
University of Guelph, Canadá
Natural Sciences and Engineering Research Council of Canada
Em curso
2019 - Atual Integrative approach to adaptive radiation in ancient lakes - a case study of Lake Ohrid Gammarus species flock
018/31/B/NZ8/03103
Investigador
Uniwersytet Lódzki, Polónia
Narodowe Centrum Nauki
2021/01/01 - 2025/12/31 Aquatic Research Infrastructure Network
LA/P/0069/2020
Investigador
Universidade de Évora, Portugal

Centro de Ciências do Mar e do Ambiente, Portugal

Universidade NOVA de Lisboa, Portugal

FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal

Instituto Universitário de Ciências Psicológicas Sociais e da Vida, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Instituto Politécnico de Leiria, Portugal

Universidade do Minho, Portugal

Universidade do Algarve, Portugal

Universidade de Coimbra, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal

Agência Regional para o Desenvolvimento da Investigação Tecnologia e Inovação, Portugal

Associação para a Inovação e Desenvolvimento da FCT, Portugal

Centro de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2022 - 2025/01/19 FISH-DNA-MONITOR: Supporting monitoring and management of fisheries resources in Guinea-Bissau through capacity-building on cutting-edge DNA- based approaches
Investigador responsável
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Aga Khan Development Network

Fundação para a Ciência e a Tecnologia
Em curso
2020/08/24 - 2024/04/23 A-FISH-DNA-SCAN: Cutting-edge DNA-based approaches for improved monitoring and management of fisheries resources along Magellan-Elcano´s Atlantic route
Investigador responsável
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Universidade do Minho, Portugal

Instituto Português do Mar e da Atmosfera, Portugal

Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal

Centro de Ciências do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2020/10/01 - 2023/09/30 ATLANTIDA - Platform for the monitoring of the North Atlantic ocean and tools for the sustainable exploitation of the marine resources
Investigador
Universidade do Minho, Portugal
Comissao de Coordenacao e Desenvolvimento Regional do Norte
Concluído
2021/10/15 - 2023/06/30 River2Ocean: Socio-ecological and biotechnological solutions for the conservation and valorisation of aquatic biodiversity in the Minho Region
Investigador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Comissao de Coordenacao e Desenvolvimento Regional do Norte
Concluído
2020/04/01 - 2023/06/30 K2D: Knowledge and Data from the Deep to Space
Investigador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2018/10/01 - 2021/09/30 NIS-DNA: Early detection and monitoring of non-indigenous species (NIS) in coastal ecosystems based on high-throughput sequencing tools
Investigador
Universidade do Minho, Portugal

Fundação Gaspar Frutuoso, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2017 - 2020 (NEXT-SEA) Next generation monitoring of coastal ecosystems in a scenario of global change
Investigador
Comissao de Coordenacao e Desenvolvimento Regional do Norte, Portugal
Concluído
2016/04 - 2020 DNAqua-Net: Developing new genetic tools for bio-assessment of aquatic ecosystems in Europe
Investigador
Universität Duisburg-Essen, Alemanha
European Cooperation in Science and Technology
Concluído
2019/01/01 - 2019/12/31 CENTRO DE BIOLOGIA MOLECULAR E AMBIENTAL
UID/BIA/04050/2019
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Universidade do Minho, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2012/03/15 - 2015/09/14 NANOECOTOX-Impacts of metal nanoparticles to aquatic ecosystems: from community responses to cellular targets
PTDC/AAC-AMB/121650/2010
Investigador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Universidade do Minho, Portugal

Universidade do Algarve, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2011/04/04 - 2014/10/02 Benthic Estuarine Barcode (BEstBarcode): Development and application of massively paralelized sequencing for monitoring of estuarine macrobenthic communities
PTDC/MAR/113435/2009
Investigador responsável
Universidade do Minho, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2011/04/01 - 2014/09/30 DiverseShores - Testing associations between genetic and community diversity in European rocky shore environments
PTDC/BIA-BIC/114526/2009
Investigador
Universidade de Aveiro, Portugal

Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2011/01/01 - 2013/12/31 Projecto Estratégico - UI 4050 - 2011-2012
PEst-C/BIA/UI4050/2011
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Universidade do Minho, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2010/03/22 - 2013/09/30 Patterns and processes of (neutral and adaptive) variation in the honey bee (Apis mellifera iberiensis) hybrid zone of the Iberian Peninsula: a population genetics approach integrating population genomics and landscape genetics
PTDC/BIA-BEC/099640/2008
Investigador
Instituto Politécnico de Bragança, Portugal

Centro de Investigação de Montanha, Portugal

Universidade do Minho, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2010/03/17 - 2013/09/15 METAFISHCODE: Fish genetic diversity and meta-species phylogeography at global and regional scales: implications for fisheries management
PTDC/MAR/101795/2008
Investigador responsável
Universidade do Minho, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Instituto Português do Mar e da Atmosfera, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2008/11/01 - 2012/04/30 LusoMarBoL: Integrating molecular approaches into marine biodiversity research in Portugal: implementing DNA barcoding and investigating phylogeographic patterns
PTDC/MAR/69892/2006
Investigador responsável
Universidade do Minho, Portugal

Universidade de Aveiro, Portugal

Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade dos Açores, Portugal

Instituto Português do Mar e da Atmosfera, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2008/11/01 - 2012/04/30 Integrating molecular approaches into marine biodiversity research in Portugal: implementing DNA barcoding and investigating phylogeographic patterns
PTDC/MAR/69892/2006
Universidade do Minho, Portugal

Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Instituto Português do Mar e da Atmosfera, Portugal

Universidade de Aveiro, Portugal

Universidade dos Açores, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2008 - 2011 LusoAquaBarcode: Implementing DNA barcoding into aquatic biodiversity research in Portugal and priming new macrobenthos monitoring tools
Investigador responsável
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
European Commission
2002/04/01 - 2005/12/31 Integration of molecular and physiological responses to contamination. Applicability to coastal environment's biomonitoring.
POCTI/BSE/41967/2001
Bolseiro de Doutoramento
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2000/01/01 - 2003/12/31 Genetic characterization and genetic ecotoxicology of a marine amphipod
POCTI/BIA/10225/2002
Bolseiro de Doutoramento
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
1998/03/01 - 2002/02/28 DOS ORGANISMOS ÀS POPULAÇÕES: TESTES DE TOXICIDADE SEDIMENTAR VERSUS POPULAÇÕES NATURAIS. UTILIZAÇÃO DE ANFÍPODES ESTUARINOS
PRAXIS XXI/BD/11575/97
Bolseiro de Doutoramento
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
1994/10/01 - 1996/09/30 GAMMARUS LOCUSTA ANPHIPODA COMO ORGANISMO TESTE EM ENSAIOS DE TOXICIDADE DE COBRE. METODOLOGIAS PARA MANUTENÇÃO DA ESPÉCIE EM LABORATÁRIO
PRAXIS XXI/BM/2390/94
Universidade de Lisboa Faculdade de Ciências, Portugal
Fundação para a Ciência e a Tecnologia
Concluído

Outro

Designação Financiadores
2022/09/09 - Atual DNA-based approaches for fisheries monitoring
Investigador responsável
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Em curso
Produções

Publicações

Artigo em conferência
  1. Marcos Tieppo; Eduardo Pereira; Laura Gonzalez Garcia; Margarida Rolim; Emanuel Castanho; Anibal Matos; Antonio Silva; et al. "Submarine Cables as Precursors of Persistent Systems for Large Scale Oceans Monitoring and Autonomous Underwater Vehicles Operation". 2022.
    10.1109/oceans47191.2022.9977360
  2. Manuela I. Parente; Filipe O. Costa; Robert Fletcher. "A DNA barcode library for crustose brown algal species.". Trabalho apresentado em 10.1080/09670262.2011.613190, 2011.
    Publicado
Artigo em revista
  1. Jorge Moutinho; Diego Carreira-Flores; Pedro T. Gomes; Filipe O. Costa; Sofia Duarte. "Assessing the Seasonal and Spatial Dynamics of Zooplankton through DNA Metabarcoding in a Temperate Estuary". Animals (2023): https://doi.org/10.3390/ani13243876.
    10.3390/ani13243876
  2. Sofia Duarte; Luara Simões; Filipe O. Costa. "Current status and topical issues on the use of eDNA-based targeted detection of rare animal species". Science of The Total Environment 904 (2023): 166675-166675. http://dx.doi.org/10.1016/j.scitotenv.2023.166675.
    10.1016/j.scitotenv.2023.166675
  3. Susana Carvalho; Hailey Shchepanik; Eva Aylagas; Michael L Berumen; Filipe O Costa; Mark Costello; Sofia Duarte; et al. "Hurdles and opportunities in implementing marine biosecurity systems in data-poor regions". BioScience 73 7 (2023): 494-512. http://dx.doi.org/10.1093/biosci/biad056.
    10.1093/biosci/biad056
  4. Alice Ferrari; Valentina Crobe; Rita Cannas; Rob W. Leslie; Fabrizio Serena; Marco Stagioni; Filipe O. Costa; et al. "To Be, or Not to Be: That Is the Hamletic Question of Cryptic Evolution in the Eastern Atlantic and Mediterranean Raja miraletus Species Complex". Animals (2023): https://doi.org/10.3390/ani13132139.
    10.3390/ani13132139
  5. Barbara R. Leite; Sofia Duarte; Jesús S. Troncoso; Filipe O. Costa. "Artificial Seaweed Substrates Complement ARMS in DNA Metabarcoding-Based Monitoring of Temperate Coastal Macrozoobenthos". Diversity (2023): https://doi.org/10.3390/d15050657.
    10.3390/d15050657
  6. Lejla Ušanovic; Dalila Destanovic; Lejla Lasic; Jasna Hanjalic Kurtovic; Filipe O. Costa; Belma Kalamujic Stroil. "Status of the BOLD reference library of DNA barcodes of caddisflies (Insecta: Trichoptera) from the Western Balkans". Periodicum Biologorum 124 3-4 (2023): 107-114. http://dx.doi.org/10.18054/pb.v124i3-4.24754.
    10.18054/pb.v124i3-4.24754
  7. Sofia Duarte; Pedro E. Vieira; Barbara R. Leite; Marcos A.L. Teixeira; João M. Neto; Filipe O. Costa. "Macrozoobenthos monitoring in Portuguese transitional waters in the scope of the water framework directive using morphology and DNA metabarcoding". Estuarine, Coastal and Shelf Science (2023): https://doi.org/10.1016/j.ecss.2022.108207.
    10.1016/j.ecss.2022.108207
  8. Ana S. Lavrador; João T. Fontes; Pedro E. Vieira; Filipe O. Costa; Sofia Duarte. "Compilation, Revision, and Annotation of DNA Barcodes of Marine Invertebrate Non-Indigenous Species (NIS) Occurring in European Coastal Regions". Diversity (2023): https://doi.org/10.3390/d15020174.
    10.3390/d15020174
  9. Marcos A. L. Teixeira; Pedro E. Vieira; David Fenwick; Joachim Langeneck; Fredrik Pleijel; Bruno R. Sampieri; José Carlos Hernández; et al. "Revealing the diversity of the green Eulalia (Annelida, Phyllodocidae) species complex along the European coast, with description of three new species". Organisms Diversity & Evolution (2023): https://doi.org/10.1007/s13127-022-00597-1.
    10.1007/s13127-022-00597-1
  10. Eduardo Pereira; Marcos Tieppo; Joao Faria; Douglas Hart; Pierre Lermusiaux; K2D Project Team. "Subsea Cables as Enablers of a Next Generation Global Ocean Sensing System". Oceanography (2023): http://dx.doi.org/10.5670/oceanog.2023.s1.22.
    10.5670/oceanog.2023.s1.22
  11. Marcos A. L. Teixeira; Torkild Bakken; Pedro E. Vieira; Joachim Langeneck; Bruno R. Sampieri; Panagiotis Kasapidis; AscensÃO Ravara; Arne Nygren; Filipe O. Costa. "The curious and intricate case of the European Hediste diversicolor (Annelida, Nereididae) species complex, with description of two new species". Systematics and Biodiversity (2022): https://doi.org/10.1080/14772000.2022.2116124.
    10.1080/14772000.2022.2116124
  12. Marcos Teixeira; Joachim Langeneck; Pedro E Vieira; José Carlos Hernández; Bruno Sampieri; Panagiotis Kasapidis; Serena Mucciolo; et al. "Reappraisal of the hyperdiverse Platynereis dumerilii (Annelida: Nereididae) species complex in the Northern Atlantic, with the description of two new species". Invertebrate Systematics 36 11 (2022): 1017-1061. http://dx.doi.org/10.1071/is21084.
    10.1071/is21084
  13. Pedro E. Vieira; Andrea Desiderato; Sofia L. Azevedo; Patricia Esquete; Filipe O. Costa; Henrique Queiroga. "Molecular evidence for extensive discontinuity between peracarid (Crustacea) fauna of Macaronesian islands and nearby continental coasts: over fifty candidate endemic species". Marine Biology (2022): https://doi.org/10.1007/s00227-022-04051-w.
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  15. Teixeira, Marcos A L; Vieira, Pedro E; Ravara, Ascensão; Filipe O. Costa; Nygren, Arne. "From 13 to 22 in a second stroke: revisiting the European Eumida sanguinea (Phyllodocidae: Annelida) species complex". Zoological Journal of the Linnean Society 196 1 (2022): 169-197. http://dx.doi.org/10.1093/zoolinnean/zlab100.
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  16. Leite, Barbara R.; Vieira, Pedro E.; Troncoso, Jesús S.; Costa, Filipe O.. "Comparing species detection success between molecular markers in DNA metabarcoding of coastal macroinvertebrates". Metabarcoding and Metagenomics 5 (2021): 249-260. http://dx.doi.org/10.3897/mbmg.5.70063.
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  17. Adriana E. Radulovici; Pedro E. Vieira; Sofia Duarte; Marcos A. L. Teixeira; Luisa M. S. Borges; Bruce E. Deagle; Sanna Majaneva; et al. "Revision and annotation of DNA barcode records for marine invertebrates: report of the 8th iBOL conference hackathon". Metabarcoding and Metagenomics (2021): https://doi.org/10.3897/mbmg.5.67862.
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  18. Gielings, Romy; Fais, Maria; Fontaneto, Diego; Creer, Simon; Costa, Filipe Oliveira; Renema, Willem; Macher, Jan-Niklas. "DNA Metabarcoding Methods for the Study of Marine Benthic Meiofauna: A Review". Frontiers in Marine Science 8 (2021): http://dx.doi.org/10.3389/fmars.2021.730063.
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  19. Bellisario, Bruno; Fais, Maria; Duarte, Sofia; Vieira, Pedro E.; Canchaya, Carlos; Costa, Filipe O.. "The network structure of intertidal meiofaunal communities from environmental DNA metabarcoding surveys in Northwest Iberia". Aquatic Sciences 83 4 (2021): http://dx.doi.org/10.1007/s00027-021-00828-1.
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  21. Pedro E. Vieira; Ana S. Lavrador; Manuela I. Parente; Paola Parretti; Ana C. Costa; Filipe O. Costa; Sofia Duarte; Mat Seymour. "Gaps in DNA sequence libraries for Macaronesian marine macroinvertebrates imply decades till completion and robust monitoring". Diversity and Distributions (2021): https://doi.org/10.1111%2Fddi.13305.
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  22. Bruno R. Sampieri; Pedro E. Vieira; Marcos A. L. Teixeira; Victor C. Seixas; Paulo R. Pagliosa; Antonia Cecília Z. Amaral; Filipe O. Costa. "Molecular diversity within the genus Laeonereis (Annelida, Nereididae) along the west Atlantic coast: paving the way for integrative taxonomy". PeerJ (2021): https://doi.org/10.7717/peerj.11364.
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  23. Marcos A. L. Teixeira; Arne Nygren; Ascensão Ravara; Pedro E. Vieira; José Carlos Hernández; Filipe O. Costa. "The small polychaete Platynereis dumerilii revealed as a large species complex with fourteen MOTUs in European marine habitats". ARPHA Conference Abstracts (2021): https://doi.org/10.3897/aca.4.e64937.
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  24. Ana Lavrador; Fábio Amaral; Pedro E. Vieira; Filipe Costa; Sofia Duarte. "Surveillance of non-indigenous invertebrate species through DNA metabarcoding in recreational marinas in the North and Center of Portugal". ARPHA Conference Abstracts (2021): https://doi.org/10.3897/aca.4.e64900.
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  25. Filipe Costa. "Venturing into auditing of reference libraries: from the hackathon on marine invertebrates to sorting with BAGS". ARPHA Conference Abstracts (2021): https://doi.org/10.3897/aca.4.e65504.
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  27. Sofia Duarte; Barbara R. Leite; Maria João Feio; Filipe O. Costa; Ana Filipa Filipe. "Integration of DNA-Based Approaches in Aquatic Ecological Assessment Using Benthic Macroinvertebrates". Water 13 3 (2021): 331-331. https://doi.org/10.3390/w13030331.
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  28. Duarte, Sofia; Vieira, Pedro E.; Lavrador, Ana S.; Costa, Filipe O.. "Status and prospects of marine NIS detection and monitoring through (e)DNA metabarcoding". Science of The Total Environment 751 (2021): 141729. http://dx.doi.org/10.1016/j.scitotenv.2020.141729.
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  29. João T Fontes; Pedro E Vieira; Torbjørn Ekrem; Pedro Soares; Filipe O Costa. "BAGS: an automated Barcode, Audit & Grade System for DNA barcode reference libraries". Molecular Ecology Resources (2020): https://doi.org/10.1111/1755-0998.13262.
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  30. Sofia Duarte; Pedro E. Vieira; Filipe O. Costa. "Assessment of species gaps in DNA barcode libraries of non-indigenous species (NIS) occurring in European coastal regions". Metabarcoding and Metagenomics (2020): https://doi.org/10.3897/mbmg.4.55162.
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  31. Parente, Manuela I.; Fletcher, Robert L.; Costa, Filipe O.; Saunders, Gary W.. "Taxonomic investigation of Ralfsia-like (Ralfsiales, Phaeophyceae) taxa in the North Atlantic Ocean based on molecular and morphological data, with descriptions of Pseudoralfsiaceae fam. nov., Pseudoralfsia azorica gen. et sp. nov. and Nuchella vesicularis gen. et sp. nov.". European Journal of Phycology (2020): 1-12. http://dx.doi.org/10.1080/09670262.2020.1753245.
    Publicado • 10.1080/09670262.2020.1753245
  32. Fais, Maria; Duarte, Sofia; Vieira, Pedro Emanuel; Sousa, Ronaldo; Hajibabaei, Mehrdad; Canchaya, Carlos Alberto; Costa, Filipe Oliveira. "Small-scale spatial variation of meiofaunal communities in Lima estuary (NW Portugal) assessed through metabarcoding". Estuarine, Coastal and Shelf Science 238 (2020): 106683. http://dx.doi.org/10.1016/j.ecss.2020.106683.
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  33. Maria Fais; Bruno Bellisario; Sofia Duarte; Pedro Emanuel Vieira; Ronaldo Sousa; Carlos Alberto Canchaya; Filipe Oliveira Costa. "Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability". Regional Studies in Marine Science (2020): 101341-101341. https://doi.org/10.1016/j.rsma.2020.101341.
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  34. Leite, B.R.; Vieira, P.E.; Teixeira, M.A.L.; Lobo-Arteaga, J.; Hollatz, C.; Borges, L.M.S.; Duarte, S.; Troncoso, J.S.; Costa, F.O.. "Gap-analysis and annotated reference library for supporting macroinvertebrate metabarcoding in Atlantic Iberia". Regional Studies in Marine Science (2020): 101307. http://dx.doi.org/10.1016/j.rsma.2020.101307.
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  35. Maria joão Feio; Costa, Filipe. "Advances in the use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems". Limnetica 39 1 (2020): 419-440. http://doi.org/10.23818/limn.39.27.
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  36. Bruno R. Sampieri; Tatiana M. Steiner; Priscila C. Baroni; Camila Fernanda da Silva; Marcos A. L. Teixeira; Pedro E. Vieira; Filipe O. Costa; Antônia C. Z. Amaral. "How oogenesis analysis combined with DNA barcode can help to elucidate taxonomic ambiguities: a polychaete study-based approach". Biota Neotropica 20 3 (2020): https://doi.org/10.1590/1676-0611-bn-2020-0959.
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  37. Teixeira, Marcos A. L.; Vieira, Pedro E.; Pleijel, Fredrik; Sampieri, Bruno R.; Ravara, Ascensão; Costa, Filipe O.; Nygren, Arne. "Molecular and morphometric analyses identify new lineages within a large Eumida (Annelida) species complex". Zoologica Scripta 49 2 (2019): 222-235. http://dx.doi.org/10.1111/zsc.12397.
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  38. Weigand, Hannah; Beermann, Arne J.; Ciampor, Fedor; Costa, Filipe O.; Csabai, Zoltán; Duarte, Sofia; Geiger, Matthias F.; et al. "DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work". Science of The Total Environment 678 (2019): 499-524. http://dx.doi.org/10.1016/j.scitotenv.2019.04.247.
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  39. Dora Henriques; Júlio Chávez-Galarza; Andreia Quaresma; Cátia José Neves; Ana Rita Lopes; Cecília Costa; Filipe O. Costa; José Rufino; Maria Alice Pinto. "From the popular tRNAleu-COX2 intergenic region to the mitogenome: insights from diverse honey bee populations of Europe and North Africa". Apidologie (2019): https://doi.org/10.1007%2Fs13592-019-00632-9.
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  40. Pedro E Vieira; Andrea Desiderato; David M Holdich; Pedro Soares; Simon Creer; Gary R Carvalho; Filipe O Costa; Henrique Queiroga. "Deep segregation in the open ocean: Macaronesia as an evolutionary hotspot for low dispersal marine invertebrates". Molecular Ecology (2019): https://doi.org/10.1111%2Fmec.15052.
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  41. Hupalo, K.; Teixeira, M.A.L.; Rewicz, T.; Sezgin, M.; Iannilli, V.; Karaman, G.S.; Grabowski, M.; Costa, F.O.. "Persistence of phylogeographic footprints helps to understand cryptic diversity detected in two marine amphipods widespread in the Mediterranean basin". Molecular Phylogenetics and Evolution 132 (2019): 53-66. http://www.scopus.com/inward/record.url?eid=2-s2.0-85057891750&partnerID=MN8TOARS.
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  44. Sampieri, Bruno; Vieira, Pedro; Teixeira, Marcos; Amaral, Antonia; Costa, Filipe. "Cryptic or cosmopolitan? Unveiling the Laeonereis culveri complex along South American estuaries through DNA barcoding". Frontiers in Marine Science 6 (2019): http://dx.doi.org/10.3389/conf.fmars.2019.08.00108.
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  45. Vieira, Pedro; Soares, Pedro; Queiroga, Henrique; Costa, Filipe. "Evolutionary insights derived from comprehensive analyses of DNA barcoding diversity in marine members of the superorder Peracarida (Crustacea: Malacostraca)". Frontiers in Marine Science 6 (2019): http://dx.doi.org/10.3389/conf.fmars.2019.08.00058.
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  58. Miguel Carneiro; Rogélia Martins; Monica Landi; Filipe O. Costa. "Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf". EJT 0 73 (2014): http://dx.doi.org/10.5852/ejt.2014.73.
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  61. Luisa M. S. Borges; Filipe O. Costa. "New records of marine wood borers (Bivalvia: Teredinidae and Isopoda: Limnoriidae) from São Miguel, Azores, with a discussion of some aspects of their biogeography". Açoreana Supp 10 (2014): 109-116. https://www.researchgate.net/publication/266854363_New_records_of_marine_wood_borers_Bivalvia_Teredinidae_and_Isopoda_Limnoriidae_from_Sao_Miguel_Azores_with_a_discussion_of_some_aspects_of_their_biogeography.
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  62. da Silva, J.M.; dos Santos, A.; Cunha, M.R.; Costa, F.O.; Creer, S.; Carvalho, G.R.. "Investigating the molecular systematic relationships amongst selected Plesionika (Decapoda: Pandalidae) from the Northeast Atlantic and Mediterranean Sea". Marine Ecology 34 2 (2013): 157-170. http://www.scopus.com/inward/record.url?eid=2-s2.0-84878258809&partnerID=MN8TOARS.
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  64. Martins, Rogelia; Costa, Filipe O.; Murta, Alberto G.; Carneiro, Miguel; Landi, Monica; Martins, R.; Costa, F.O.; et al. "First record of Zenion hololepis (Zenionidae) in Portuguese continental waters: the northernmost occurrence in the eastern Atlantic". Marine Biodiversity Records 5 3 (2012): http://dx.doi.org/10.1017/s1755267211000522.
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  68. Matzen da Silva, J.; dos Santos, A.; Cunha, M.R.; Costa, F.O.; Creer, S.; Carvalho, G.R.. "Multigene molecular systematics confirm species status of morphologically convergent Pagurus hermit crabs". PLoS ONE 6 12 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-83055163865&partnerID=MN8TOARS.
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  69. Costa, F.O.; Carvalho, G.R.. "New insights into molecular evolution: Prospects from the barcode of life initiative (BOLI)". Theory in Biosciences 129 2-3 (2010): 149-157. http://www.scopus.com/inward/record.url?eid=2-s2.0-77956874617&partnerID=MN8TOARS.
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  70. Costa, F.O.; Henzler, C.M.; Lunt, D.H.; Whiteley, N.M.; Rock, J.. "Probing marine Gammarus (Amphipoda) taxonomy with DNA barcodes". Systematics and Biodiversity 7 4 (2009): 365-379. http://www.scopus.com/inward/record.url?eid=2-s2.0-77949772352&partnerID=MN8TOARS.
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  71. Neuparth, T.; Costa, F.O.; Theodorakis, C.W.; Costa, M.H.; Bickham, J.W.. "Assessment of dna damage in blood cells of spams aurata l. exposed to benzo[A]pyrene using three distinct genotoxicity assays". Fresenius Environmental Bulletin 18 4 (2009): 461-467. http://www.scopus.com/inward/record.url?eid=2-s2.0-66149164420&partnerID=MN8TOARS.
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  73. Ward, R.D.; Costa, F.O.; Holmes, B.H.; Steinke, D.. "DNA barcoding of shared fish species from the North Atlantic and Australasia: Minimal divergence for most taxa, but zeus faber and lepidopus caudatus each probably constitute two species". Aquatic Biology 3 1 (2008): 71-78. http://www.scopus.com/inward/record.url?eid=2-s2.0-59149085495&partnerID=MN8TOARS.
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  74. Costa, Filipe O; Carvalho, Gary R. "The Barcode of Life Initiative: synopsis and prospective societal impacts of DNA barcoding of Fish". Genomics, Society and Policy 3 2 (2007): http://dx.doi.org/10.1186/1746-5354-3-2-29.
    10.1186/1746-5354-3-2-29
  75. Costa, Filipe O; Carvalho, Gary R. "The Barcode of Life Initiative: Reply to Dupré, Hollingsworth and Holm". Genomics, Society and Policy 3 2 (2007): http://dx.doi.org/10.1186/1746-5354-3-2-52.
    10.1186/1746-5354-3-2-52
  76. Costa, F.O.; DeWaard, J.R.; Boutillier, J.; Ratnasingham, S.; Dooh, R.T.; Hajibabaei, M.; Hebert, P.D.N.. "Biological identifications through DNA barcodes: The case of the Crustacea". Canadian Journal of Fisheries and Aquatic Sciences 64 2 (2007): 272-295. http://www.scopus.com/inward/record.url?eid=2-s2.0-34248158085&partnerID=MN8TOARS.
    10.1139/F07-008
  77. Theodorakis, C.; Rinchard, J.; Anderson, T.; Liu, F.; Park, J.-W.; Costa, F.; McDaniel, L.; Kendall, R.; Waters, A.. "Perchlorate in fish from a contaminated site in east-central Texas". Environmental Pollution 139 1 (2006): 59-69. http://www.scopus.com/inward/record.url?eid=2-s2.0-27744524863&partnerID=MN8TOARS.
    10.1016/j.envpol.2005.04.030
  78. Neuparth, T.; Bickham, J.W.; Theodorakis, C.W.; Costa, F.O.; Costa, M.H.. "Endosulfan-induced genotoxicity detected in the gilthead seabream, Sparus aurata L., by means of flow cytometry and micronuclei assays". Bulletin of Environmental Contamination and Toxicology 76 2 (2006): 242-248. http://www.scopus.com/inward/record.url?eid=2-s2.0-32344440811&partnerID=MN8TOARS.
    10.1007/s00128-006-0913-2
  79. Costa, F.O.; Neuparth, T.; Correia, A.D.; Helena Costa, M.. "Multi-level assessment of chronic toxicity of estuarine sediments with the amphipod Gammarus locusta: II. Organism and population-level endpoints". Marine Environmental Research 60 1 (2005): 93-110. http://www.scopus.com/inward/record.url?eid=2-s2.0-11844249998&partnerID=MN8TOARS.
    10.1016/j.marenvres.2004.08.005
  80. Neuparth, T.; Correia, A.D.; Costa, F.O.; Lima, G.; Costa, M.H.. "Multi-level assessment of chronic toxicity of estuarine sediments with the amphipod Gammarus locusta: I. Biochemical endpoints". Marine Environmental Research 60 1 (2005): 69-91. http://www.scopus.com/inward/record.url?eid=2-s2.0-11844282197&partnerID=MN8TOARS.
    10.1016/j.marenvres.2004.08.006
  81. Costa, F.O.; Cunha, M.R.; Neuparth, T.; Theodorakis, C.W.; Costa, M.H.; Shugart, L.R.. "Application of RAPD DNA fingerprinting in taxonomic identification of amphipods: A case-study with Gammarus species (Crustacea: Amphipoda)". Journal of the Marine Biological Association of the United Kingdom 84 1 (2004): 171-178. http://www.scopus.com/inward/record.url?eid=2-s2.0-1042279375&partnerID=MN8TOARS.
    10.1017/S0025315404009038h
  82. Costa, F.O.; Neuparth, T.; Theodorakis, C.W.; Costa, M.H.; Shugart, L.R.. "RAPD analysis of southern populations of Gammarus locusta: Comparison with allozyme data and ecological inferences". Marine Ecology Progress Series 277 (2004): 197-207. http://www.scopus.com/inward/record.url?eid=2-s2.0-4544282043&partnerID=MN8TOARS.
  83. Neuparth, T.; Costa, F.O.; Costa, M.H.. "Effects of temperature and salinity on life history of the marine amphipod Gammarus locusta. Implications for ecotoxicological testing". Ecotoxicology 11 1 (2002): 61-73. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036168328&partnerID=MN8TOARS.
    10.1023/A:1013797130740
  84. Costa, F.O.; Neuparth, T.; Costa, M.H.; Theodorakis, C.W.; Shugart, L.R.. "Detection of DNA strand breakage in a marine amphipod by agarose gel electrophoresis: Exposure to X-rays and copper". Biomarkers 7 6 (2002): 451-463. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036874852&partnerID=MN8TOARS.
    10.1080/13547500210160762
  85. Coelho, H.; Costa, F.O.; Costa, M.H.; Coelho, M.M.. "Low genetic variability of the widespread amphipod Gammarus locusta, as evidenced by allozyme electrophoresis of southern European populations". Crustaceana 75 11 (2002): 1335-1348. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037863151&partnerID=MN8TOARS.
    10.1163/156854002321629772
  86. Ana Dulce Correia; Filipe O. Costa; Teresa Neuparth; Mario Diniz; Maria Helena Costa. "Sub-lethal effects of copper-spiked sediments on the amphipod Gammarus locusta. Evidence of hormesis?". Ecotoxicology and Environmental Restoration 4.2 (2001): 32-38. https://www.researchgate.net/publication/236620372_Sub-lethal_Effects_of_Copper-Spiked_Sediments_on_the_Marine_Amphipod_Gammarus_locusta_Evidence_of_Hormesis.
    Publicado
  87. Costa, F.O.; Costa, M.H.. "Review of the ecology of Gammarus locusta (L.)". Polskie Archiwum Hydrobiologii 47 3-4 (2000): 541-559. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034431176&partnerID=MN8TOARS.
  88. Costa, F.O.; Costa, M.H.. "Life history of the amphipod Gammarus locusta in the Sado estuary (Portugal)". Acta Oecologica 20 4 (1999): 305-314. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033165696&partnerID=MN8TOARS.
    10.1016/S1146-609X(99)00136-8
  89. Costa, F.O.; Correia, A.D.; Costa, M.H.. "Acute marine sediment toxicity: A potential new test with the amphipod Gammarus locusta". Ecotoxicology and Environmental Safety 40 1-2 (1998): 81-87. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032076987&partnerID=MN8TOARS.
    10.1006/eesa.1998.1646
  90. Filipe O. Costa; Ana Dulce Correia; Maria Helena Costa. "Sensitivity of a marine amphipod to non-contaminant variables and to copper in the sediment". Écologie 27 (1996): 41-48. https://www.researchgate.net/publication/294689582_Sensitivity_of_a_marine_amphipod_to_non-contaminant_variables_and_to_copper_in_the_sediment.
    Publicado
Capítulo de livro
  1. Leese, Florian; Bouchez, Agnès; Abarenkov, Kessy; Altermatt, Florian; Borja, Ángel; Bruce, Kat; Ekrem, Torbjørn; et al. "Why We Need Sustainable Networks Bridging Countries, Disciplines, Cultures and Generations for Aquatic Biomonitoring 2.0: A Perspective Derived From the DNAqua-Net COST Action". In Next Generation Biomonitoring: Part 1, 63-99. Elsevier, 2018.
    Publicado • 10.1016/bs.aecr.2018.01.001
  2. Monica Landi; Alfredo Araújo; Jorge Lobo-Arteaga; João Pedro Bernardes; Rui Morais; Hugo Froufe; Conceição Egas; César Oliveira; Filipe O. Costa. "Ancient DNA in archaeological garum remains from the south of Portugal". In ArchaeoAnalytics: Chromatograhy and DNA analysis in archaeology., editado por César Oliveira; Rui Morais; Angel Morillo Cerdán, 237-245. Esposende, Portugal: Município de Esposende, 2015.
    Publicado
  3. Costa, Filipe Oliveira; Antunes, Pedro Madeira. "The Contribution of the Barcode of Life Initiative to the Discovery and Monitoring of Biodiversity". In Natural Resources, Sustainability and Humanity, 37-68. Springer Netherlands, 2012.
    10.1007/978-94-007-1321-5_4
  4. Carvalho, G. R.; Creer, S.; Allen, Michael J.; Costa, F. O.; Tsigenopoulos, C. S.; Le Goff-Vitry, M.; Magoulas, A.; Medlin, L.; Metfies, K.. "Genomics in the Discovery and Monitoring of Marine Biodiversity". In Introduction to Marine Genomics, 1-32. Springer Netherlands, 2010.
    Publicado • 10.1007/978-90-481-8639-6_1
Edição de livro
  1. Filipe O. Costa; Cunha, Marina R.. Book of Abstracts. 16th International Colloquium on Amphipoda, Universidade de Aveiro-Universidade do Minho. Aveiro, Portugal: Universidade de Aveiro Editora. 2015.
    Publicado
Atividades

Apresentação oral de trabalho

Título da apresentação Nome do evento
Anfitrião (Local do evento)
2023/07/19 Overview of (e)DNA (meta)barcoding and BIOSCAN / BIOSCAN-Europe Biodiversa+ Workshops on Monitoring Non-Indigenous Species Through Introduction sites
Central Fisheries Research Institute (Yomra, Trabzon, Turquia)
2023/07/12 DNA barcodes in the discovery and monitoring of marine biodiversity ATLANTIDA - Platform for the monitoring of the North Atlantic Ocean and tools for the sustainable exploitation of the marine resources – Final event
CIIMAR (Matosinhos, Portugal)
2023/07/07 Usefulness and potential of (e)DNA (meta)barcoding in marine biodiversity monitoring and management Encontro Ciência 2023 da Fundação para a Ciência e Tecnologia (FCT)
Universidade de Aveiro (Aveiro, Portugal)
2023/06/30 Challenges for sampling eDNA from open ocean, deep sea and the seabed. K2D- Knowledge from deep to space- final event
DSTelecom (Braga, Portugal)
2022/12/16 Insights into biodiversity and evolution after 20 years of DNA barcoding, with a focus on marine life XVIII Encontro Nacional de Biologia Evolutiva (ENBE)
University of Minho (Braga, Portugal)
2022/06/09 XI Brazilian Crustacean Congress / The Crustacean Society Summer (TCS) meeting / Amphipoda Symposium (online event) New DNA barcoding-driven perspectives on the diversity and evolution of marine Peracarida (Crustacea): the case of the Macaronesia’s hotspot
Universidade Estadual Paulista (UNESP) (São Paulo, Brasil)
2021/03/09 Venturing into auditing of reference libraries: from the hackathon on marine invertebrates to sorting with BAGS First DNAQUA International Conference
Costa Action DNAqua-Net / INRAE, Carrtel, France, Online Event (Carrtel, França)
2018/07 Aquatic macroinvertebrates diversity and evolution: some novel perspectives after 15 years of DNA barcoding 3rd Central European Symposium for Aquatic Macroinvertebrate Research (3rd CESAMIR)
University of Lodz (Lodz, Polónia)
2017/01 Appraisal and prospects of DNA barcoding marine life of Portugal: from Sanger to high-throughput sequencing. CIIMAR Oceanus Seminar Series
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research (Porto, Portugal)
2012 The contribution of DNA barcoding to marine life taxonomy. First Iberian Meeting on Marine Taxonomy
University of Seville (Seville, Espanha)
2012 Introduction to DNA barcoding. Workshop in Marine DNA barcoding
Universidade dos Açores (Ponta Delgada, Portugal)

Orientação

Título / Tema
Papel desempenhado
Curso (Tipo)
Instituição / Organização
2023/01/01 - 2023/09/30 ATLANTIDA: Platform for the monitoring of the North Atlantic Ocean and tools for the sustainable exploitation of marine resources
Orientador de Luara Aparecida Simões
Post-doctoral fellow (Outra)
Universidade do Minho, Portugal
2023 - 2023 DNA metabarcoding monitoring of zooplankton for the detection of non-indigenous species (NIS): a seasonal study in a recreational marina of the northwest of Portugal
Coorientador
Biodiversidade, Ecologia e Alterações Globais (Mestrado)
Universidade do Minho, Portugal
2019 - 2022/09/06 Phyllodocida (Annelida, Polychaeta) of the North East Atlantic as a model for the investigation of cryptic species
Orientador
Ciência, Tecnologia e Gestão do Mar (Doutoramento)
Universidade do Minho, Portugal
2022 - 2022 DNA metabarcoding for the early detection and improved monitoring of non-indigenous species (NIS) in Portuguese coastal ecosystems
Coorientador
Biologia Molecular e Ambiental (Doutoramento)
Universidade do Minho, Portugal
2022 - 2022 Potential of Atlantic codfish (Gadus morhua) skin collagen and derivatives on skincare
Coorientador
Bioquímica Aplicada (Mestrado)
Universidade do Minho, Portugal
2022 - 2022 Otimização de ferramentas moleculares para a monitorização de espécies não indígenas em regiões costeiras do Norte de Portugal
Coorientador
Ecologia (Mestrado)
Universidade do Minho, Portugal
2017 - 2021/03/31 Monitoring coastal benthic colonization of artificial substrates with the support of DNA metabarcoding approaches
Orientador
Ciência, Tecnologia e Gestão do Mar (Doutoramento)
Universidade do Minho, Portugal
2021 - 2021 Exploring the use of environmental DNA to monitor the ichthyofauna and provide data to assist fish stock assessment in the Atlantic
Orientador
Biologia (Doutoramento)
Universidade do Minho, Portugal
2021 - 2021 DNA-based monitoring of ichthyoplankton for application to fish biodiversity conservation and fisheries management
Orientador
Biologia Molecular e Ambiental (Doutoramento)
Universidade do Minho, Portugal
2021 - 2021 Meta-species screening for genetic divergence and phylogeographic reconstruction in Atlantic Marine fish species
Orientador
Biologia Molecular e Ambiental (Doutoramento)
Universidade do Minho, Portugal
2019/11 - 2020/07 Ecological network analyses of marine communities from Portuguese coastal ecosystems, with particular focus on data derived from high-throughput sequencing
Orientador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2020 - 2020 Improving auditing and annotation of DNA barcode reference libraries of animal COI sequences for Molecular Ecology applications
Orientador
Ecologia (Mestrado)
Universidade do Minho, Portugal
2018 - 2019 DNA barcoding of the genus Laeonereis (Phyllodocida: Nereididae): a recent approach for an old impasse
Orientador de Bruno Rodrigues Sampieri
Post-doctoral fellow supported by FAPESP, São Paulo, Brazil (Outra)
2016 - 2019 Metabarcoding of meio- and macrobenthic estuarine communities: performance assessment and implementation in monitoring programmes
Orientador de Sofia Alexandra Ferreira Duarte
Post-Doctoral Fellowship SFRH/BPD/109842/2015 (Outra)
Universidade do Minho, Portugal
2017 - 2017 Development of metabarcoding approaches for investigating temporal and spatial dynamics of meiobenthic communities in estuarine ecosystem
Orientador
Ciência, Tecnologia e Gestão do Mar (Doutoramento)
Universidade do Minho, Portugal
2012 - 2017 Biodiversity and evolution of the coastal peracaridean fauna of Macaronesia and Northeast Atlantic
Coorientador de Pedro Emanuel Ferreira dos Reis Vieira
Universidade de Aveiro, Portugal
2016 - 2016 Employment of whole genome resequencing to reveal the evolutionary history and to develop molecular tools for Western European honey bees (Apis mellifera subspecies)
Coorientador
Biologia Molecular e Ambiental (Doutoramento)
Universidade do Minho, Portugal
2016 - 2016 Molecular biodiversity and advanced monitoring tools for macrobenthic communities of Portuguese coastal ecosystems
Orientador
Biologia Molecular e Ambiental (Doutoramento)
Universidade do Minho, Portugal
2015 - 2016 Biblioteca de referência de DNA barcodes de anfípodes (Crustacea: Amphipoda) da costa Portuguesa
Orientador de Ilisa Daniela Costa Antunes
Ecologia (Mestrado)
Universidade do Minho, Portugal
2014 - 2016 Development of a biomonitoring tool for estuarine macrobenthic communities based on DNA barcodes and next generation sequencing
Orientador de Claudia Hollatz
Pós-Doctoral fellow supported by the programme "Ciência sem Fronteiras (Capes, Brasil)" (Outra)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2014 - 2015 DNA barcodes de peixes marinhos da Europa: compilação de uma biblioteca de referência validada e investigação de padrões de divergência genética
Orientador de Luís Manuel Coelho Oliveira
Ecologia (Mestrado)
Universidade do Minho, Portugal
2014 - 2015 Biblioteca de referência de DNA barcodes de bivalves (Mollusca: Bivalvia) e gastrópodes (Mollusca: Gastropoda) da costa Portuguesa.
Orientador de Ana Paula Peixoto Vilela
Ecologia (Mestrado)
Universidade do Minho, Portugal
2014 - 2015 Priming of a DNA metabarcoding approach for species identification and inventory in marine macrobenthic communities
Orientador de Bárbara Daniela da Rocha Leite
Genética Molecular (Mestrado)
Universidade do Minho, Portugal
2011 - 2015 Population genomics and landscape genetics of the Iberian honey bee (Apis mellifera iberiensis)
Coorientador de Julio César Chávez Galarza
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2013 - 2014 Construção de uma biblioteca de referência de DNA barcodes para Isópodes marinhos (Crustacea: Isopoda) de Portugal e da Macaronésia
Orientador de Nuno Miguel Araújo Gomes
Ecologia (Mestrado)
Universidade do Minho, Portugal
2012 - 2013 Compilação de uma bibliografia de referência de DNA barcodes para peixes marinhos de Portugal e estudo filogeográfico da espécie Zeus faber
Orientador de Cláudia Soraia Lopes Castro
Ecologia (Mestrado)
Universidade do Minho, Portugal
2009/01 - 2012/04 Integrating molecular approaches into marine biodiversity research in Portugal: implementing DNA barcoding and investigating phylogeographic patterns
Orientador de Luísa Maria Sousa Borges
Post-doctoral fellow in the scope of the FCT funded project "LusoMarBoL" PTDC/MAR/69892/2006 (Outra)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2006 - 2012 Biodiversity and molecular evolution of Malacostraca
Coorientador de Joana Rafael Matzen Neves Da Silva
Universidade de Aveiro, Portugal

Organização de evento

Nome do evento
Tipo de evento (Tipo de participação)
Instituição / Organização
2023/10/19 - 2023/10/20 IV International Meeting of the Portuguese Society of Genetics, October 19-20, Braga, Portugal. (2023)
Conferência (Membro da Comissão Organizadora)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2022/12/15 - 2022/12/16 XVIII Encontro Nacional de Biologia Evolutiva (ENBE), December 15-16, 2022, Braga, Portugal. (2022/12/15 - 2022/12/16)
Conferência (Membro da Comissão Organizadora)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2019/09 - 2019/09 XXth SIEBM: 20th Iberian Symposium on Marine Biology Studies (2019/09 - 2019/09)
Conferência (Membro da Comissão Organizadora)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2019 - 2019 Workshop "Hackathon on revision of reference libraries of Marine Invertebrates": co-Coordinator (2019/06/16 - 2019/06/16)
Oficina (workshop) (Coorganizador)
Norges teknisk-naturvitenskapelige universitet, Noruega
2019 - 2019 Mini-workshop on Barcode of Life Datasystems (BOLD) (2019 - 2019)
Oficina (workshop) (Membro da Comissão Organizadora)
Université Bourgogne Franche-Comté, França
2018/01/24 - 2018/01/26 DNAqua-Net workshop: Gap analyses workshop and WG1 meeting of the COST Action DNAqua-Net ref. CA 15219 (2018/01/24 - 2018/01/26)
Oficina (workshop) (Presidente da Comissão Organizadora)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2016 - 2016 32nd Symposium of the European Society of Nematologists (2016 - 2016)
Simpósio (Membro da Comissão Organizadora)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2015/09 - 2015/09 16th ICA: 16th International Colloquium on Amphipoda (2015/09/07 - 2015/09/11)
Conferência (Presidente da Comissão Organizadora)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2012 - 2012 NGS in Marine Genomics: Current challenges and future directions. (2012/09 - 2012/09)
Simpósio (Coorganizador)
Universidade de Vigo, Espanha
2012 - 2012 XVIth Congress of the Iberian Society of Limnology. (2012 - 2012)
Congresso (Membro da Comissão Organizadora)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2010/06/02 - 2010/06/04 ECBOL2: 2nd Conference of the European Consortium for the Barcode of Life: 2010 International Year of Biodiversity (2010/06/02 - 2010/06/04)
Conferência (Presidente da Comissão Organizadora)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2008 - 2008 FISH-BOL workshop: 1st Workshop of the European Regional Working Group of the Fish Barcode of Life Initiative. (2008 - 2008)
Oficina (workshop) (Coorganizador)
Università degli Studi di Palermo, Itália

Júri de grau académico

Tema
Tipo de participação
Nome do candidato (Tipo de grau)
Instituição / Organização
2022/06/09 Phyllodocida (Annelida, Polychaeta) ofthe North East Atlantic as a model forthe investigation of cryptic species
Orientador
Marcos André Machado Lima Teixeira (Doutoramento)
Universidade do Minho, Portugal
2020/12/07 VAGILE FOULING: BIOGEOGRAPHY AND COMMUNITY DRIVERS OF AN UNDERSTUDIED COMMUNITY OF OVERLOOKED TAXA
Arguente principal
Andrea Desiderato (Doutoramento)
Universidade Federal do Paraná, Brasil
2020/11/23 Impacts of the invasive species corbicula fluminea on freswater mussels
Arguente
Ana Vanessa Pinto Modesto Bento (Doutoramento)
Universidade do Minho, Portugal
2020 Under the surface: combining ecological and evolutionary analysis to conserve freshwater mussels in the Iberian Peninsula
Arguente principal
Manuel Peixoto de Magalhães Lopes Lima (Doutoramento)
Universidade do Porto Faculdade de Ciências, Portugal
2018/04/12 Sistemática molecular e historia evolutiva de peces marinos de profundidad del Océano Atlántico y del Mar Mediterráneo
Arguente principal
David Barros Garcia (Doutoramento)
Universidade de Vigo, Espanha
2017/10/31 Biodiversity and evolution of the coastal peracaridean fauna from Macaronesia and Northeast Atlantic
Orientador
Pedro Emanuel Ferreira Dos Reis Vieira (Doutoramento)
Universidade de Aveiro, Portugal
2017/07 Molecular clocks and rates of evolution in marine invertebrates
Arguente principal
Tzitziki del Rosario Loeza Quintana (Doutoramento)
University of Guelph, Canadá
2017 Invasive species as resource subsidies: functional importance
Arguente
Adriana Araújo Novais (Doutoramento)
Universidade do Minho, Portugal
2017 The microbiome of cetaceans as a health status marker
Arguente principal
Helena Maria Araújo Rodrigues (Mestrado)
Universidade do Minho, Portugal
2016 Propagação clonal, conectividade e estrutura genética em populações de Paramuricea clavata do Atlântico e Mediterrâneo
Arguente principal
Joanna Pilczynska (Doutoramento)
Universidade de Aveiro, Portugal
2014 Macrofaunal biodiversity of bathyal habitats at the Moroccan Carbonate Province (Gulf of Cadiz, NE Atlantic)
Arguente principal
JOANA FILIPA MONTEIRO CASAIS (Mestrado)
Universidade de Aveiro, Portugal
2013/06 Responses of aquatic decomposers to nutrient availability in a warming scenario
Arguente
Isabel Rodrigues Fernandes (Doutoramento)
Universidade do Minho, Portugal
2012 Filogeografia das lampreias da Europa Ocidental: contributos para a compreensão dos seus padrões de especiação.
Arguente principal
Ana Martins Pereira (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2012 Taxonomy, systematics, morphological and molecular phylogeny of the order tanaidacea (crustacea: peracarida), from the Antarctic, atlantic and pacific oceans
Arguente principal
Catarina de Lourdes Araújo Silva (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2009 Genetic and morphological diversity of the genus Lampetra (Petromyzontidae) in Europe
Arguente principal
Catarina Sofia Pereira Mateus (Doutoramento)
Universidade de Évora Instituto de Investigação e Formação Avançada, Portugal

Arbitragem científica em conferência

Nome da conferência Local da conferência
2022/06/20 - 2022/06/23 IX Iberian Congress of Ichthyology (SIBIC 2022) CIIMAR, University of Porto
2020/12/09 - 2020/12/11 XIX Encontro Nacional de Ecologia (Sociedade Portuguesa de Ecologia – SPECO) Instituto Politécnico de Viana do Castelo (IPVC)
2019/08 - 2019/08 18th International Colloquium on Amphipoda University of Burgundy, Dijon, France
2019/06 - 2019/06 8th International Barcode of Life Conference University of Trondheim, Trondheim, Norway
2017 - 2017 17th International Colloquium on Amphipoda University of Palermo, Trapani, Italy
2017 - 2017 7th International Barcode of Life Conference University of Johannesburg, Kruger, South Africa
2016 - 2016 CdM ISC’16: Campus do Mar International Scientific Conference 2016 Universidade de Trás-os-Montes e Alto Douro (UTAD)
2015/09 - 2015/09 16th International Colloquium on Amphipoda University of Aveiro, Portugal; University of Minho, Portugal
2015 - 2015 6th International Barcode of Life Conference University of Guelph, ON, Canada
2013 - 2013 15th International Colloquium on Amphipoda University of Lodz, Poland

Arbitragem científica em revista

Nome da revista (ISSN) Editora
2016 - Atual Metabarcoding and Metagenomics (2534-9708) Pensoft Publishers
2014 - Atual Scientific Reports (2045-2322) Springer Science and Business Media LLC

Curso / Disciplina lecionado

Disciplina Curso (Tipo) Instituição / Organização
2019/10 - 2019/10 DNA barcoding - from sequences to species / ForBio Research School on Biosystematics ForBio Research School on Biosystematics (Postgraduate Certificate) Norges teknisk-naturvitenskapelige universitet, Noruega
2018 - 2018 Erasmus+ exchange Invited lecture Erasmus+ exchange Invited lecture (Postgraduate Certificate) Universidade de Vigo, Espanha

Membro de comissão

Descrição da atividade
Tipo de participação
Instituição / Organização
2016 - Atual DNAqua-Net Portugal Delegate and Management Committee member of the COST Action "DNAqua-Net: Developing new genetic tools for bio- assessment of aquatic ecosystems in Europe" http://dnaqua.net
Membro
Universität Duisburg-Essen, Alemanha
2008 - Atual iBOL: Portugal Delegate in the International Barcode of Life (iBOL) consortium: http://www.ibol.org
Membro
University of Guelph, Canadá

Outro júri / avaliação

Descrição da atividade Instituição / Organização
2019 - Atual Referee for the PhD thesis of Chiara Abbatista titled "Biogeographic patterns of Mediterranean Amphipods associated with Posidonia oceanic meadows" Università degli Studi della Tuscia, Itália
2019 - 2020 Referee for the PhD thesis of Luca Vecchioni titled "Systematics and phylogeography of the genus Tigriopus (Copepoda, Harpacticoida, Harpacticidae) in the basin of the Mediterranean Sea" Università degli Studi di Palermo, Itália
Distinções

Prémio

2022 Prize for Recognition of the Impact of Scientific Research
Universidade do Minho Escola de Ciências, Portugal
2020 Prize for Scientific Research and Technological Development
Fundação para a Ciência e a Tecnologia, Portugal