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Identification

Personal identification

Full name
Catarina Inês Marques de Sousa Mendes

Citation names

  • Mendes, Catarina

Author identifiers

Ciência ID
BC17-7B4F-737C
ORCID iD
0000-0002-3090-7426

Languages

Language Speaking Reading Writing Listening Peer-review
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Portuguese Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
2022/06/01
Ongoing
 Doutoramento Bolonha em Programa Doutoral do Centro Académico de Medicina de Lisboa (Doutoramento)
Universidade de Lisboa Faculdade de Medicina, Portugal
"TRACI: Towards Accreditation in Metagenomics for Clinical Microbiology" (THESIS/DISSERTATION)
 n/a
2017
Ongoing
 Ciências e Tecnologias da Saúde (Doutoramento)
Major in Especialidade: Biologia Computacional
Universidade de Lisboa Faculdade de Medicina, Portugal
"TRACI: Towards accreditation in metagenomics for clinical microbiology" (THESIS/DISSERTATION)
2016/11/04
Concluded
 Mestrado em Bioinformática e Biologia computacional (Mestrado)
Universidade de Lisboa Faculdade de Ciências, Portugal
"Pan-genome comparison between Streptococcus dysgalactiae subsp. equisimilis isolates from human and animal sources" (THESIS/DISSERTATION)
 17
2016
Concluded
 Bioinformática e Biologia Computacional (Mestrado)
Major in Área de especialização: Bioinformática
Universidade de Lisboa Faculdade de Ciências, Portugal
"Pan-genome comparison between Streptococcus dysgalactiae subs.equisimilis isolates from human and animal sources" (THESIS/DISSERTATION)
 17 valores
2014/06/14
Concluded
 Licenciatura em Biologia Celular e Molecular (Licenciatura)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
"n/a" (THESIS/DISSERTATION)
 15
Affiliation

Science

Category
Host institution 		Employer
2016 - 2018 Researcher (Research) Instituto de Medicina Molecular João Lobo Antunes, Portugal
2016/09/21 - 2017/12/31 Researcher (Research) Instituto de Medicina Molecular João Lobo Antunes, Portugal
2015 - 2015 Researcher (Research) Instituto de Medicina Molecular João Lobo Antunes, Portugal

Others

Category
Host institution 		Employer
2015/09/01 - 2016/09/20 Estudante de Mestrado Instituto de Medicina Molecular João Lobo Antunes, Portugal
2014/06/23 - 2014/07/11 Estágio no âmbito do Programa de Introdução à Prática Profissional Hospital SAMS, Portugal
Projects

Grant

Designation Funders
2018/01 - 2021/12 TRACI: Towards Accreditation in Metagenomics for Clinical Microbiology
SFRH/BD/129483/2017
 Fundação para a Ciência e a Tecnologia

Contract

Designation Funders
2016/12/01 - 2019/11/30 BacGenTrack – An integrated system for Bacterial Genome Tracking using high throughput sequencing technology: from identification to visualization<br>
TUBITAK/0004/2014
Instituto de Medicina Molecular João Lobo Antunes, Portugal

Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Journal article
  1. Catarina I. Mendes; Erley Lizarazo; Miguel P. Machado; Diogo N. Silva; Adriana Tami; Mário Ramirez; Natacha Couto; John W. A. Rossen; João A. Carriço. "DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing". Microbial Genomics (2020): https://doi.org/10.1099/mgen.0.000328.
    10.1099/mgen.0.000328
  2. Giuseppe Fleres; Natacha Couto; Leonard Schuele; Monika A Chlebowicz; Catarina I Mendes; Luc W M van der Sluis; John W A Rossen; Alex W Friedrich; Silvia García-Cobos. "Detection of a novel mcr-5.4 gene variant in hospital tap water by shotgun metagenomic sequencing". Journal of Antimicrobial Chemotherapy (2019): https://doi.org/10.1093/jac/dkz363.
    10.1093/jac/dkz363
  3. Mendes, Catarina. "Streptococcus pneumoniae Serotype 3 in Mexico (1994 to 2017): Decrease of the Unusual Clonal Complex 4909 Lineage following PCV13 Introduction". (2018): http://dx.doi.org/10.1128/jcm.01354-18.
    10.1128/jcm.01354-18
  4. Mendes, Catarina. "Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.". Scientific reports (2018): http://europepmc.org/articles/PMC6137123.
    10.1038/s41598-018-31873-w
  5. Pinho MD; Erol E; Ribeiro-Gonçalves B; Mendes CI; Carriço JA; Matos SC; Preziuso S; et al. "Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxon.". (2016): http://europepmc.org/abstract/med/27530432.
    10.1038/srep31736
Thesis / Dissertation
  1. Mendes, Catarina Inês Marques de Sousa. "Pan-genome comparison between Streptococcus dysgalactiae subsp. equisimilis isolates from human and animal sources". Master, 2016. http://hdl.handle.net/10451/25958.

Other

Other output
  1. DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics. 2019. C I Mendes; E Lizarazo; M P Machado; D N Silva; A Tami; M Ramirez; N Couto; J W A Rossen; J A Carriço. https://doi.org/10.1101/628073.
    10.1101/628073
Distinctions

Award

2017 Melhor Poster | Best Poster
Sociedade Portuguesa de Microbiolgia, Portugal
2017 Melhor poster | Best poster
Universidade do Minho, Portugal