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Isabel Henriques is an Associate Professor at the University of Coimbra (UC). She graduated in Biology (1997), earned an MSc in Molecular Microbiology (2001) and completed her PhD in Biology in 2006 at the University of Aveiro (UA). As a microbiologist, she explores the intersection between environment and health, applying One Health principles, with a special focus on antimicrobial resistance ecology. She co-coordinates the Research Group One Health at Centre for Functional Ecology (CFE) - Science for People & the Planet and leads the MicroResist Lab, with 5 PhD students and 2 MSc students; previously she trained 3 post-docs, 11 PhD and 31 MSc students. Published more than 130 WoS papers, among other outputs. Coordinated 6 research projects, contributing to several others. Served on scientific committees, Editorial Boards (e.g., Frontiers in Microbiology, BMC Genomics, and Antibiotics) and evaluating panels of grant proposals. Participated in 27 PhD juries in 9 universities across 5 countries. She taught and developed many Microbiology courses, directed the MSc in Microbiology at UA (2017-2018), and currently directs the PhD in Biosciences (DCV-UC; since 2019). She was member of the Scientific Council of UA (2018) and is a member of the Scientific Committee of DCV (since 2019).
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Identificação

Identificação pessoal

Nome completo
Isabel Henriques
Género
Feminino

Nomes de citação

  • Henriques, Isabel
  • Henriques, I
  • Henriques, I S

Identificadores de autor

Ciência ID
F516-BFA6-1588
ORCID iD
0000-0001-7717-4939
Researcher Id
B-1667-2008

Endereços de correio eletrónico

  • isabel.henriques@uc.pt (Profissional)

Telefones

Telefone
  • 239240795 (Profissional)

Moradas

  • Universidade de Coimbra. Dept. de Ciências da Vida, Calçada Martim de Freitas, 3000-456 , Coimbra, Coimbra, Portugal (Profissional)

Websites

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Microbiologia

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Inglês Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1)
Francês Utilizador independente (B1) Utilizador independente (B1) Utilizador elementar (A1) Utilizador independente (B1)
Português (Idioma materno)
Espanhol; Castelhano Utilizador independente (B1) Utilizador independente (B1) Utilizador elementar (A1) Utilizador independente (B1)
Formação
Grau Classificação
2006
Concluído
 Biology (Doutoramento)
Universidade de Aveiro, Portugal
2001
Concluído
 Molecular Microbiology (Mestrado)
Universidade de Aveiro, Portugal
1992 - 1997
Concluído
 Biology (Licenciatura)
Universidade de Aveiro, Portugal
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento 		Empregador
2013 - 2018 Investigador (Investigação) Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2012 - 2015 Investigador visitante (Investigação) Universidade Federal do Pará, Brasil
2006 - 2013 Pós-doutorado (Investigação) Universidade de Aveiro, Portugal

Docência no Ensino Superior

Categoria Profissional
Instituição de acolhimento 		Empregador
2022/12 - Atual Professor Associado (Docente Universitário) Universidade de Coimbra, Portugal
2018 - 2022/12 Professor Auxiliar (Docente Universitário) Universidade de Coimbra, Portugal
2007 - 2013 Professor Auxiliar Convidado (Docente Universitário) Universidade de Aveiro, Portugal

Cargos e Funções

Categoria Profissional
Instituição de acolhimento 		Empregador
2023 - Atual Coordinator of the Research Group One Health Universidade de Coimbra Centre for Functional Ecology - Science for People & the Planet, Portugal
2021/11 - Atual Member of the Scientific Committee of the Department of Life Sciences Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2019 - Atual Coordinator of the PhD in Biosciences Universidade de Coimbra, Portugal
2016 - 2020 Coordinator of the Microbial and Cellular Biology Laboratory Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2017 - 2018 Member of the Scientific Council of the University of Aveiro Universidade de Aveiro, Portugal
2017 - 2018 Coordinator of the Master's Degree in Microbiology Universidade de Aveiro, Portugal
2017 - 2018 Coordinator of the Environmental Biology and Health Research Line Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal

Outros

Categoria Profissional
Instituição de acolhimento 		Empregador
1997 - 1998 High School Teacher Ministério da Educação, Portugal
Projetos

Projeto

Designação Financiadores
2024 - 2024 Exploiting the power of Portuguese macroalgae and halophytes: A promising approach to tackle antibiotic resistance.
FAM FOUNDATION
Investigador
Universidade de Coimbra Centre for Functional Ecology - Science for People & the Planet, Portugal
Em curso
2022 - 2024 MICRANT: Microplastics in Estarreja rivers and their role in the spread of pathogens and antibiotic resistance
MICRANT
Investigador responsável
Labex DRIIHM
Em curso
2018 - 2021 GREAT: Granular microalgae- bacterial sludge for aquaculture wastewater treatment.
POCI-01-0145-FEDER-029970
Investigador
Fundação para a Ciência e a Tecnologia
Concluído
2018 - 2021 Resilience of anthozoan corals to deep-sea mining, a holobiont approach
PTDC/BIA-BMA/29861/2017
Investigador
Fundação para a Ciência e a Tecnologia
Concluído
2018 - 2021 ZnO nanostructures and ZnO/nanocarbon composites for biosensor applications
PTDC/NAN-MAT/28755/2017
Investigador
Fundação para a Ciência e a Tecnologia
Concluído
2018 - 2021 METOXCLIM: Metal contamination in a global warming perspective: effects on soil properties and relation with toxicity changes
POCI-01-0145-FEDER-029557
Investigador
Fundação para a Ciência e a Tecnologia
Concluído
2016 - 2019 GENetic and clinIcAL markers in COPD trajectory
Provided by PTCRIS: 140910
Investigador
Fundação para a Ciência e a Tecnologia
2014 - 2019 Antibiotic resistance in aquatic systems: quantify risks and outline solutions
grant.Provided by PTCRIS: 147551
Investigador responsável
Fundação para a Ciência e a Tecnologia
2017 - 2018 ARTEMan: Antibiotic resistance transferability between environmental and human settings
4.4.1.00 CAPES
Investigador responsável
Fundação para a Ciência e a Tecnologia
Concluído
2014 - 2017 Stopping Antibiotic Resistance Evolution
Provided by PTCRIS: 138543
Investigador responsável
Universidade de Aveiro, Portugal
 Fundação para a Ciência e a Tecnologia
2014 - 2015 REFRESH: Minimizing microbial hazards in vegetables cultivated in the Estarreja municipality.
REFRESH
Investigador responsável
Labex DRIIHM
Concluído
2013 - 2015 Spatial and temporal analysis of microbial community in Pine Wilt Disease
Provided by PTCRIS: 130287
130287
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
2012 - 2015 PhytoMarsh - The phytosphere of salt-marsh plants: an underexplored microbial hot-spot
118873
Provided by PTCRIS: 118873
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
2013 - 2014 ARISKA: Antibiotic Resistance in the Antuã River: assessing risks to public health.
ARISKA
Investigador responsável
Labex DRIIHM
Concluído
2010 - 2013 TBTRESENSE - TBT bioremediation and development of biosensor for in situ detection of tributyltin (TBT) in the environment
Provided by PTCRIS: 108024
108024
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
2010 - 2013 SEAGULL - Identification of nonpoint sources of faecal pollution in a natural environment: contributing data for risk assessment.
Provided by PTCRIS: 109155
109155
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
2010 - 2013 FUBIA: Soil Function-Biodiversity relationship And regional variation
Provided by PTCRIS: 103719
103719
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
2008 - 2012 The role of salt marsh plants on mercury cycle: identifying plant-bacteria-Hg interactions critical for ecosystem remediation (MARMER)
Provided by PTCRIS: 67752
67752
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
2005 - 2008 Constructed wetlands for industrial wastewater treatment
60126
Provided by PTCRIS: 60126
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
2005 - 2007 Isolation and characterization of tributyltin (TBT) resistance genes in marine bacteria
56475
Provided by PTCRIS: 56475
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
Produções

Publicações

Artigo em revista
  1. Alves, Marta; Henriques, Isabel; Castro, Paula M.L.; Amorim, Catarina L.. "Adaptative biological response of aerobic granular sludge to events of single or combined wastewater related stressors". Process Safety and Environmental Protection 194 (2025): 1303-1314. https://doi.org/10.1016/j.psep.2024.12.080.
    10.1016/j.psep.2024.12.080
  2. Tavares, Rafael D.S.; Tacão, Marta; Henriques, Isabel. "Integrons are key players in the spread of beta-lactamase-encoding genes". International Journal of Antimicrobial Agents (2025): 107421. https://doi.org/10.1016/j.ijantimicag.2024.107421.
    10.1016/j.ijantimicag.2024.107421
  3. Leitão, Frederico; Pinto, Glória; Henriques, Isabel. "Pinus radiata seedlings rhizobiome shifts in response to foliar and root phosphite application". European Journal of Soil Biology 123 (2024): 103688. https://doi.org/10.1016/j.ejsobi.2024.103688.
    10.1016/j.ejsobi.2024.103688
  4. Silva, I; Rodrigues, ET; Tacão, M; Henriques, I. "Plastisphere in a low-pollution mountain river: Influence of microplastics on survival of pathogenic bacteria". Chemosphere 368 (2024): 143800. http://dx.doi.org/10.1016/j.chemosphere.2024.143800.
    10.1016/j.chemosphere.2024.143800
  5. Tavares, Rafael D.S.; Fidalgo, Cátia; Rodrigues, Elsa T.; Tacão, Marta; Henriques, Isabel. "Integron-associated genes are reliable indicators of antibiotic resistance in wastewater despite treatment- and seasonality-driven fluctuations". Water Research (2024): 121784. http://dx.doi.org/10.1016/j.watres.2024.121784.
    10.1016/j.watres.2024.121784
  6. Peixoto, Sara; Morgado, Rui G.; Prodana, Marija; Cardoso, Diogo N.; Malheiro, Catarina; Neves, Joana; Santos, Cátia; et al. "Responses of soil microbiome to copper-based materials (nano and bulk) for agricultural applications: An indoor-mesocosm experiment". NanoImpact 34 (2024): 100506. http://dx.doi.org/10.1016/j.impact.2024.100506.
    10.1016/j.impact.2024.100506
  7. Silva, Isabel; Tacão, Marta; Henriques, Isabel. "Hidden threats in the plastisphere: Carbapenemase-producing Enterobacterales colonizing microplastics in river water". Science of The Total Environment (2024): 171268. http://dx.doi.org/10.1016/j.scitotenv.2024.171268.
    10.1016/j.scitotenv.2024.171268
  8. Isabel Silva; Marta Alves; Catarina Malheiro; Ana Rita R. Silva; Susana Loureiro; Isabel Henriques; M. Nazaret González-Alcaraz. "Structural and Functional Shifts in the Microbial Community of a Heavy Metal-Contaminated Soil Exposed to Short-Term Changes in Air Temperature, Soil Moisture and UV Radiation". Genes (2024): https://doi.org/10.3390/genes15010107.
    10.3390/genes15010107
  9. Isabel Silva; Elsa T. Rodrigues; Marta Tacão; Isabel Henriques. "Microplastics accumulate priority antibiotic-resistant pathogens: Evidence from the riverine plastisphere". Environmental Pollution (2023): https://doi.org/10.1016/j.envpol.2023.121995.
    10.1016/j.envpol.2023.121995
  10. Oliveira, Ana S.; Alves, Marta; Leitão, Frederico; Tacão, Marta; Henriques, Isabel; Castro, Paula M.L.; Amorim, Catarina L.. "Bioremediation of coastal aquaculture effluents spiked with florfenicol using microalgae-based granular sludge – a promising solution for recirculating aquaculture systems". Water Research 233 (2023): 119733. http://dx.doi.org/10.1016/j.watres.2023.119733.
    10.1016/j.watres.2023.119733
  11. Rafael D. S. Tavares; Marta Tacão; Elmano Ramalheira; Sónia Ferreira; Isabel Henriques. "Report and Comparative Genomics of an NDM-5-Producing Escherichia coli in a Portuguese Hospital: Complex Class 1 Integrons as Important Players in blaNDM Spread". Microorganisms (2022): https://doi.org/10.3390/microorganisms10112243.
    10.3390/microorganisms10112243
  12. Marta Tacão; José Laço; Pedro Teixeira; Isabel Henriques. "CTX-M-Producing Bacteria Isolated from a Highly Polluted River System in Portugal". International Journal of Environmental Research and Public Health (2022): https://doi.org/10.3390/ijerph191911858.
    10.3390/ijerph191911858
  13. Frederico Leitão; Glória Pinto; Joana Amaral; Pedro Monteiro; Isabel Henriques. "New insights into the role of constitutive bacterial rhizobiome and phenolic compounds in two Pinus spp. with contrasting susceptibility to pine pitch canker". Tree Physiology (2022): https://doi.org/10.1093/treephys/tpab119.
    10.1093/treephys/tpab119
  14. Rocha, Jaqueline; Henriques, Isabel; Gomila, Margarita; Manaia, Célia M.. "Common and distinctive genomic features of Klebsiella pneumoniae thriving in the natural environment or in clinical settings". Scientific Reports 12 1 (2022): http://dx.doi.org/10.1038/s41598-022-14547-6.
    10.1038/s41598-022-14547-6
  15. Teixeira, Pedro; Pinto, Nuno; Henriques, Isabel; Tacão, Marta. "KPC-3-, GES-5-, and VIM-1-Producing Enterobacterales Isolated from Urban Ponds". International Journal of Environmental Research and Public Health 19 10 (2022): 5848. http://dx.doi.org/10.3390/ijerph19105848.
    10.3390/ijerph19105848
  16. Silva, Isabel; Alves, Marta; Malheiro, Catarina; Silva, Ana Rita R.; Loureiro, Susana; Henriques, Isabel; González-Alcaraz, M. Nazaret. "Short-Term Responses of Soil Microbial Communities to Changes in Air Temperature, Soil Moisture and UV Radiation". Genes 13 5 (2022): 850. http://dx.doi.org/10.3390/genes13050850.
    10.3390/genes13050850
  17. Pedro Teixeira; Marta Tacão; Isabel Henriques. "Occurrence and distribution of Carbapenem-resistant Enterobacterales and carbapenemase genes along a highly polluted hydrographic basin". Environmental Pollution 300 (2022): 118958-118958. https://doi.org/10.1016/j.envpol.2022.118958.
    10.1016/j.envpol.2022.118958
  18. Rodrigues, Luís; Coelho, Elisabete; Madeira, Renata; Teixeira, Pedro; Henriques, Isabel; Coimbra, Manuel A.. "Food Ingredients Derived from Lemongrass Byproduct Hydrodistillation: Essential Oil, Hydrolate, and Decoction". Molecules 27 8 (2022): 2493. http://dx.doi.org/10.3390/molecules27082493.
    10.3390/molecules27082493
  19. Quintanilla, Elena; Rodrigues, Clara F.; Henriques, Isabel; Hilário, Ana. "Microbial Associations of Abyssal Gorgonians and Anemones (>4,000 m Depth) at the Clarion-Clipperton Fracture Zone". Frontiers in Microbiology 13 (2022): http://dx.doi.org/10.3389/fmicb.2022.828469.
    10.3389/fmicb.2022.828469
  20. Rocha, Jaqueline; Ferreira, Catarina; Mil-Homens, Dalila; Busquets, Antonio; Fialho, Arsénio M.; Henriques, Isabel; Gomila, Margarita; Manaia, Célia M.. "Third generation cephalosporin-resistant Klebsiella pneumoniae thriving in patients and in wastewater: what do they have in common?". BMC Genomics 23 1 (2022): http://dx.doi.org/10.1186/s12864-021-08279-6.
    10.1186/s12864-021-08279-6
  21. Peixoto, Sara; Loureiro, Susana; Henriques, Isabel. "The impact of silver sulfide nanoparticles and silver ions in soil microbiome". Journal of Hazardous Materials 422 (2022): 126793. http://dx.doi.org/10.1016/j.jhazmat.2021.126793.
    10.1016/j.jhazmat.2021.126793
  22. Peixoto, Sara; Oliveira, Jacinta M.M.; Henriques, Isabel; Morgado, Rui G.; Soares, Amadeu M.V.M.; Loureiro, Susana. "Pollution- induced community tolerance framework - disc diffusion method to assess the impact of silver nanoparticles in soils: Potential relevance for risk assessment". Applied Soil Ecology 169 (2022): 104185. http://dx.doi.org/10.1016/j.apsoil.2021.104185.
    10.1016/j.apsoil.2021.104185
  23. Jacinta M. M. Oliveira; Isabel Henriques; Daniel S. Read; Hyun S. Gweon; Rui G. Morgado; Sara Peixoto; António Correia; Amadeu M. V. M. Soares; Susana Loureiro. "Gut and faecal bacterial community of the terrestrial isopod Porcellionides pruinosus: potential use for monitoring exposure scenarios". Ecotoxicology (2021): https://doi.org/10.1007/s10646-021-02477-4.
    10.1007/s10646-021-02477-4
  24. S. Araújo; S. R. Azenha; I. Henriques; M. Tacão. "qnrA gene diversity in Shewanella spp.". Microbiology (2021): https://doi.org/10.1099/mic.0.001118.
    10.1099/mic.0.001118
  25. Araújo, S.; Sousa, M.; Tacão, M.; Baraúna, R.A.; Silva, A.; Ramos, R.; Alves, A.; Manaia, C.M.; Henriques, I.. "Carbapenem-resistant bacteria over a wastewater treatment process: Carbapenem-resistant Enterobacteriaceae in untreated wastewater and intrinsically-resistant bacteria in final effluent". Science of The Total Environment 782 (2021): 146892. http://dx.doi.org/10.1016/j.scitotenv.2021.146892.
    10.1016/j.scitotenv.2021.146892
  26. Araújo, Susana; Tacão, Marta; Baraúna, Rafael; Ramos, Rommel; Silva, Artur; Henriques, Isabel. "Genome analysis of two multidrug-resistant Escherichia coli O8:H9-ST48 strains isolated from lettuce". Gene 785 (2021): 145603. http://dx.doi.org/10.1016/j.gene.2021.145603.
    10.1016/j.gene.2021.145603
  27. Antonieta Gabriel; Sara Costa; Isabel Henriques; Isabel Lopes. "Effects of Long-Term Exposure to Increased Salinity on the Amphibian Skin Bacterium Erwinia toletana". Archives of Environmental Contamination and Toxicology (2021): https://doi.org/10.1007/s00244-021-00845-z.
    10.1007/s00244-021-00845-z
  28. Ana Rita Almeida; Marta Tacão; Joana Soares; Inês Domingues; Isabel Henriques. "Tetracycline-Resistant Bacteria Selected from Water and Zebrafish after Antibiotic Exposure". International Journal of Environmental Research and Public Health (2021): https://doi.org/10.3390/ijerph18063218.
    10.3390/ijerph18063218
  29. Almeida, Ana Rita; Domingues, Inês; Henriques, Isabel. "Zebrafish and water microbiome recovery after oxytetracycline exposure". Environmental Pollution 272 (2021): 116371. http://dx.doi.org/10.1016/j.envpol.2020.116371.
    10.1016/j.envpol.2020.116371
  30. Ralf Lopes; Danny Fuentes-Castillo; Herrison Fontana; Larissa Rodrigues; Karine Dantas; Louise Cerdeira; Isabel Henriques; Nilton Lincopan; Zackery Bulman. "Endophytic Lifestyle of Global Clones of Extended-Spectrum ß-Lactamase-Producing Priority Pathogens in Fresh Vegetables: a Trojan Horse Strategy Favoring Human Colonization?". mSystems (2021): https://doi.org/10.1128/mSystems.01125-20.
    10.1128/mSystems.01125-20
  31. Isabel Silva; Marta Tacão; Isabel Henriques. "Selection of antibiotic resistance by metals in a riverine bacterial community". Chemosphere 263 (2021): 127936-127936. https://doi.org/10.1016/j.chemosphere.2020.127936.
    10.1016/j.chemosphere.2020.127936
  32. Peixoto, S.; Khodaparast, Z.; Cornelis, G.; Lahive, E.; Green Etxabe, A.; Baccaro, M.; Papadiamantis, A.G.; et al. "Impact of Ag2S NPs on soil bacterial community – A terrestrial mesocosm approach". Ecotoxicology and Environmental Safety 206 (2021): 111405. http://dx.doi.org/10.1016/j.ecoenv.2020.111405.
    10.1016/j.ecoenv.2020.111405
  33. Peixoto, Sara; Henriques, Isabel; Loureiro, Susana. "Long-term effects of Cu(OH)2 nanopesticide exposure on soil microbial communities". Environmental Pollution 269 (2021): 116113. http://dx.doi.org/10.1016/j.envpol.2020.116113.
    10.1016/j.envpol.2020.116113
  34. Dias, Marcela França; de Castro, Giovanni Marques; de Paiva, Magna Cristina; de Paula Reis, Mariana; Facchin, Susanne; do Carmo, Anderson Oliveira; Alves, Marta Salgueiro; et al. "Exploring antibiotic resistance in environmental integron-cassettes through intI-attC amplicons deep sequencing". Brazilian Journal of Microbiology (2020): http://dx.doi.org/10.1007/s42770-020-00409-8.
    10.1007/s42770-020-00409-8
  35. Marano, Roberto B.M.; Fernandes, Telma; Manaia, Célia M.; Nunes, Olga; Morrison, Donald; Berendonk, Thomas U.; Kreuzinger, Norbert; et al. "A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants". Environment International 144 (2020): 106035. http://dx.doi.org/10.1016/j.envint.2020.106035.
    10.1016/j.envint.2020.106035
  36. Oliveira, Amanda M.S.; Baraúna, Rafael A.; Marcon, Davi J.; Lago, Letícia A.B.; Silva, Artur; Lusio, Joana; Tavares, Rafael D.S.; et al. "Occurrence, antibiotic-resistance and virulence of E. coli strains isolated from mangrove oysters (Crassostrea gasar) farmed in estuaries of Amazonia". Marine Pollution Bulletin 157 (2020): 111302. http://dx.doi.org/10.1016/j.marpolbul.2020.111302.
    10.1016/j.marpolbul.2020.111302
  37. Rodriguez-Mozaz, Sara; Vaz-Moreira, Ivone; Varela Della Giustina, Saulo; Llorca, Marta; Barceló, Damià; Schubert, Sara; Berendonk, Thomas U.; et al. "Antibiotic residues in final effluents of European wastewater treatment plants and their impact on the aquatic environment". Environment International 140 (2020): 105733. http://dx.doi.org/10.1016/j.envint.2020.105733.
    10.1016/j.envint.2020.105733
  38. Tavares, Rafael D.S.; Tacão, Marta; Figueiredo, Ana S.; Duarte, Ana S.; Esposito, Fernanda; Lincopan, Nilton; Manaia, Célia M.; Henriques, Isabel. "Genotypic and phenotypic traits of blaCTX-M-carrying Escherichia coli strains from an UV-C-treated wastewater effluent". Water Research (2020): 116079. http://dx.doi.org/10.1016/j.watres.2020.116079.
    No prelo • 10.1016/j.watres.2020.116079
  39. Teixeira, Pedro; Tacão, Marta; Pureza, Leide; Gonçalves, Joana; Silva, Artur; Cruz-Schneider, Maria Paula; Henriques, Isabel. "Occurrence of carbapenemase-producing Enterobacteriaceae in a Portuguese river: blaNDM, blaKPC and blaGES among the detected genes". Environmental Pollution 260 (2020): 113913. http://dx.doi.org/10.1016/j.envpol.2020.113913.
    10.1016/j.envpol.2020.113913
  40. Teixeira, Pedro; Tacão, Marta; Baraúna, Rafael A.; Silva, Artur; Henriques, Isabel. "Genomic analysis of Chromobacterium haemolyticum: insights into the species resistome, virulence determinants and genome plasticity". Molecular Genetics and Genomics (2020): http://dx.doi.org/10.1007/s00438-020-01676-8.
    10.1007/s00438-020-01676-8
  41. Alves, Jorianne; Dias, Larissa; Mateus, Jackeline; Marques, Joana; Graças, Diego; Ramos, Rommel; Seldin, Lucy; et al. "Resistome in Lake Bolonha, Brazilian Amazon: Identification of Genes Related to Resistance to Broad-Spectrum Antibiotics". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.00067.
    10.3389/fmicb.2020.00067
  42. Marta Salgueiro Alves; Anabela Pereira; Cláudia Vicente; Manuel Mota; Isabel Henriques. "Pseudomonas associated with Bursaphelenchus xylophilus, its insect vector and the host tree: A role in pine wilt disease?". Forest Pathology (2019): e12564-e12564. https://doi.org/10.1111/efp.12564.
    10.1111/efp.12564
  43. Almeida, A.R.; Tacão, M.; Machado, A.L.; Golovko, O.; Zlabek, V.; Domingues, I.; Henriques, I.. "Long-term effects of oxytetracycline exposure in zebrafish: A multi-level perspective". Chemosphere 222 (2019): 333-344. http://www.scopus.com/inward/record.url?eid=2-s2.0-85060692567&partnerID=MN8TOARS.
    10.1016/j.chemosphere.2019.01.147
  44. Fidalgo, C.; Proença, D.N.; Morais, P.V.; Henriques, I.; Alves, A.. "The endosphere of the salt marsh plant Halimione portulacoides is a diversity hotspot for the genus Salinicola: description of five novel species Salinicola halimionae sp. nov., Salinicola aestuarinus sp. nov., Salinicola endophyticus sp. nov., Salinicola halophyticus sp. nov. and Salinicola lusitanus sp. nov". International journal of systematic and evolutionary microbiology 69 1 (2019): 46-62. http://www.scopus.com/inward/record.url?eid=2-s2.0-85059493404&partnerID=MN8TOARS.
    10.1099/ijsem.0.003061
  45. Almeida, A.R.; Alves, M.; Domingues, I.; Henriques, I.. "The impact of antibiotic exposure in water and zebrafish gut microbiomes: A 16S rRNA gene-based metagenomic analysis". Ecotoxicology and Environmental Safety 186 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85073241872&partnerID=MN8TOARS.
    10.1016/j.ecoenv.2019.109771
  46. Santos, M.; Peixoto, S.; Pereira, J.L.; Luís, A.T.; Henriques, I.; Gonçalves, F.J.M.; Pereira, M.J.; Oliveira, H.; Vidal, T.. "Using flow cytometry for bacterioplankton community analysis as a complementary tool to Water Framework Directive to signal putatively impacted sites". Science of the Total Environment 695 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85070614907&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2019.133754
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  103. Cleary, D.F.R.; Oliveira, V.; Gomes, N.C.M.; Pereira, A.; Henriques, I.; Marques, B.; Almeida, A.; et al. "Impact of sampling depth and plant species on local environmental conditions, microbiological parameters and bacterial composition in a mercury contaminated salt marsh". Marine Pollution Bulletin 64 2 (2012): 263-271. http://www.scopus.com/inward/record.url?eid=2-s2.0-84856267315&partnerID=MN8TOARS.
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  104. Santos, A.L.; Oliveira, V.; Baptista, I.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "Effects of UV-B radiation on the structural and physiological diversity of bacterioneuston and bacterioplankton". Applied and Environmental Microbiology 78 6 (2012): 2066-2069. http://www.scopus.com/inward/record.url?eid=2-s2.0-84857831854&partnerID=MN8TOARS.
    10.1128/AEM.06344-11
  105. Moura, A.; Oliveira, C.; Henriques, I.; Smalla, K.; Correia, A.. "Broad diversity of conjugative plasmids in integron-carrying bacteria from wastewater environments". FEMS Microbiology Letters 330 2 (2012): 157-164. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859439313&partnerID=MN8TOARS.
    10.1111/j.1574-6968.2012.02544.x
  106. Azevedo, J.S.N.; Ramos, I.; Araújo, S.; Oliveira, C.S.; Correia, A.; Henriques, I.S.. "Spatial and temporal analysis of estuarine bacterioneuston and bacterioplankton using culture-dependent and culture-independent methodologies". Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology 101 4 (2012): 819-835. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862651668&partnerID=MN8TOARS.
    10.1007/s10482-012-9697-z
  107. Moura, A.; Pereira, C.; Henriques, I.; Correia, A.. "Novel gene cassettes and integrons in antibiotic-resistant bacteria isolated from urban wastewaters". Research in Microbiology 163 2 (2012): 92-100. http://www.scopus.com/inward/record.url?eid=2-s2.0-84858004667&partnerID=MN8TOARS.
    10.1016/j.resmic.2011.10.010
  108. Oliveira, C.S.; Lázaro, B.; Azevedo, J.S.N.; Henriques, I.; Almeida, A.; Correia, A.. "New molecular variants of epsilon and beta IncP-1 plasmids are present in estuarine waters". Plasmid 67 3 (2012): 252-258. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859896762&partnerID=MN8TOARS.
    10.1016/j.plasmid.2011.11.002
  109. Santos, A.L.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "Effects of ultraviolet radiation on the abundance, diversity and activity of bacterioneuston and bacterioplankton: Insights from microcosm studies". Aquatic Sciences 73 1 (2011): 63-77. http://www.scopus.com/inward/record.url?eid=2-s2.0-79251609461&partnerID=MN8TOARS.
    10.1007/s00027-010-0160-9
  110. Santos, A.L.; Lopes, S.; Baptista, I.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, Â.. "Diversity in UV sensitivity and recovery potential among bacterioneuston and bacterioplankton isolates". Letters in Applied Microbiology 52 4 (2011): 360-366. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952531449&partnerID=MN8TOARS.
    10.1111/j.1472-765X.2011.03011.x
  111. Matos, A.; Borges, M.-T.; Peixe, C.; Henriques, I.; Pereira, C.M.; Castro, P.M.L.. "A molecular and multivariate approach to the microbial community of a commercial shallow raceway marine recirculation system operating with a Moving Bed Biofilter". Aquaculture Research 42 9 (2011): 1308-1322. http://www.scopus.com/inward/record.url?eid=2-s2.0-79961195347&partnerID=MN8TOARS.
    10.1111/j.1365-2109.2010.02719.x
  112. Moura, A.; Henriques, I.; Smalla, K.; Correia, A.. "Wastewater bacterial communities bring together broad-host range plasmids, integrons and a wide diversity of uncharacterized gene cassettes". Research in Microbiology 161 1 (2010): 58-66. http://www.scopus.com/inward/record.url?eid=2-s2.0-74649085158&partnerID=MN8TOARS.
    10.1016/j.resmic.2009.11.004
  113. Calhau, V.; Tacão, M.; Morgado, F.; Correia, A.; Henriques, I.. "PCR-DGGE-based methodologies to assess diversity and dynamics of Aeromonas communities". Journal of Applied Microbiology 108 2 (2010): 611-623. http://www.scopus.com/inward/record.url?eid=2-s2.0-74049101601&partnerID=MN8TOARS.
    10.1111/j.1365-2672.2009.04452.x
  114. Moura, A.; Tacão, M.; Henriques, I.; Dias, J.; Ferreira, P.; Correia, A.. "Characterization of bacterial diversity in two aerated lagoons of a wastewater treatment plant using PCR-DGGE analysis". Microbiological Research 164 5 (2009): 560-569. http://www.scopus.com/inward/record.url?eid=2-s2.0-70249103518&partnerID=MN8TOARS.
    10.1016/j.micres.2007.06.005
  115. Santos, A.L.; Mendes, C.; Gomes, N.C.M.; Henriques, I.; Correia, A.; Almeida, A.; Cunha, A.. "Short-term variability of abundance, diversity and activity of estuarine bacterioneuston and bacterioplankton". Journal of Plankton Research 31 12 (2009): 1545-1555. http://www.scopus.com/inward/record.url?eid=2-s2.0-70449625322&partnerID=MN8TOARS.
    10.1093/plankt/fbp083
  116. Moura, A.; Soares, M.; Pereira, C.; Leitão, N.; Henriques, I.; Correia, A.. "INTEGRALL: A database and search engine for integrons, integrases and gene cassettes". Bioinformatics 25 8 (2009): 1096-1098. http://www.scopus.com/inward/record.url?eid=2-s2.0-64549119505&partnerID=MN8TOARS.
    10.1093/bioinformatics/btp105
  117. Calheiros, C.S.C.; Duque, A.F.; Moura, A.; Henriques, I.S.; Correia, A.; Rangel, A.O.S.S.; Castro, P.M.L.. "Substrate effect on bacterial communities from constructed wetlands planted with Typha latifolia treating industrial wastewater". Ecological Engineering 35 5 (2009): 744-753. http://www.scopus.com/inward/record.url?eid=2-s2.0-63449124954&partnerID=MN8TOARS.
    10.1016/j.ecoleng.2008.11.010
  118. Calheiros, C.S.C.; Duque, A.F.; Moura, A.; Henriques, I.S.; Correia, A.; Rangel, A.O.S.S.; Castro, P.M.L.. "Changes in the bacterial community structure in two-stage constructed wetlands with different plants for industrial wastewater treatment". Bioresource Technology 100 13 (2009): 3228-3235. http://www.scopus.com/inward/record.url?eid=2-s2.0-63449116471&partnerID=MN8TOARS.
    10.1016/j.biortech.2009.02.033
  119. Henriques, I.S.; Fonseca, F.; Alves, A.; Saavedra, M.J.; Correia, A.. "Tetracycline-resistance genes in Gram-negative isolates from estuarine waters". Letters in Applied Microbiology 47 6 (2008): 526-533. http://www.scopus.com/inward/record.url?eid=2-s2.0-56549100091&partnerID=MN8TOARS.
    10.1111/j.1472-765X.2008.02452.x
  120. Albano, H.; Henriques, I.; Correia, A.; Hogg, T.; Teixeira, P.. "Characterization of microbial population of 'Alheira' (a traditional Portuguese fermented sausage) by PCR-DGGE and traditional cultural microbiological methods". Journal of Applied Microbiology 105 6 (2008): 2187-2194. http://www.scopus.com/inward/record.url?eid=2-s2.0-56649094482&partnerID=MN8TOARS.
    10.1111/j.1365-2672.2008.03947.x
  121. De Figueiredo, D.R.; Pereira, M.J.; Moura, A.; Silva, L.; Bárrios, S.; Fonseca, F.; Henriques, I.; Correia, A.. "Bacterial community composition over a dry winter in meso- and eutrophic Portuguese water bodies". FEMS Microbiology Ecology 59 3 (2007): 638-650. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847719968&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2006.00241.x
  122. Moura, A.; Henriques, I.; Ribeiro, R.; Correia, A.. "Prevalence and characterization of integrons from bacteria isolated from a slaughterhouse wastewater treatment plant". Journal of Antimicrobial Chemotherapy 60 6 (2007): 1243-1250. http://www.scopus.com/inward/record.url?eid=2-s2.0-36448968228&partnerID=MN8TOARS.
    10.1093/jac/dkm340
  123. Fonseca, F.; Sarmento, A.C.; Henriques, I.; Samyn, B.; Van Beeumen, J.; Domingues, P.; Domingues, M.R.; Saavedra, M.J.; Correia, A.. "Biochemical characterization of SFC-1, a class A carbapenem-hydrolyzing ß-lactamase". Antimicrobial Agents and Chemotherapy 51 12 (2007): 4512-4514. http://www.scopus.com/inward/record.url?eid=2-s2.0-36749039667&partnerID=MN8TOARS.
    10.1128/AAC.00491-07
  124. Alves, A.; Phillips, A.J.L.; Henriques, I.; Correia, A.. "Rapid differentiation of species of Botryosphaeriaceae by PCR fingerprinting". Research in Microbiology 158 2 (2007): 112-121. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847388553&partnerID=MN8TOARS.
    10.1016/j.resmic.2006.10.003
  125. Henriques, I.; Moura, A.; Alves, A.; Saavedra, M.J.; Correia, A.. "Analysing diversity among ß-lactamase encoding genes in aquatic environments". FEMS Microbiology Ecology 56 3 (2006): 418-429. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646562168&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2006.00073.x
  126. Henriques, I.S.; Alves, A.; Tacão, M.; Almeida, A.; Cunha, A.; Correia, A.. "Seasonal and spatial variability of free-living bacterial community composition along an estuarine gradient (Ria de Aveiro, Portugal)". Estuarine, Coastal and Shelf Science 68 1 (2006): 139-148. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646889784&partnerID=MN8TOARS.
    10.1016/j.ecss.2006.01.015
  127. Carvalho, M.F.; Ferreira Jorge, R.; Pacheco, C.C.; De Marco, P.; Henriques, I.S.; Correia, A.; Castro, P.M.L.. "Long-term performance and microbial dynamics of an up-flow fixed bed reactor established for the biodegradation of fluorobenzene". Applied Microbiology and Biotechnology 71 4 (2006): 555-562. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745936577&partnerID=MN8TOARS.
    10.1007/s00253-005-0175-7
  128. Emanuelsson, M.A.E.; Henriques, I.S.; Ferreira Jorge, R.M.; Castro, P.M.L.. "Biodegradation of 2-fluorobenzoate in upflow fixed bed bioreactors operated with different growth support materials". Journal of Chemical Technology and Biotechnology 81 9 (2006): 1577-1585. http://www.scopus.com/inward/record.url?eid=2-s2.0-33747480950&partnerID=MN8TOARS.
    10.1002/jctb.1565
  129. Henriques, I.S.; Fonseca, F.; Alves, A.; Saavedra, M.J.; Correia, A.. "Occurrence and diversity of integrons and ß-lactamase genes among ampicillin-resistant isolates from estuarine waters". Research in Microbiology 157 10 (2006): 938-947. http://www.scopus.com/inward/record.url?eid=2-s2.0-34548630152&partnerID=MN8TOARS.
    10.1016/j.resmic.2006.09.003
  130. Alves, A.; Phillips, A.J.L.; Henriques, I.; Correia, A.. "Evaluation of amplified ribosomal DNA restriction analysis as a method for the identification of Botryosphaeria species". FEMS Microbiology Letters 245 2 (2005): 221-229. http://www.scopus.com/inward/record.url?eid=2-s2.0-17144428889&partnerID=MN8TOARS.
    10.1016/j.femsle.2005.03.005
  131. Tacão, M.; Moura, A.; Alves, A.; Henriques, I.; Saavedra, M.J.; Correia, A.. "Evaluation of 16S rDNA- and gyrB-DGGE for typing members of the genus Aeromonas". FEMS Microbiology Letters 246 1 (2005): 11-18. http://www.scopus.com/inward/record.url?eid=2-s2.0-18144391544&partnerID=MN8TOARS.
    10.1016/j.femsle.2005.03.033
  132. Henriques, I.; Moura, A.; Alves, A.; Saavedra, M.J.; Correia, A.. "Molecular characterization of a carbapenem-hydrolyzing class A ß-lactamase, SFC-1, from Serratia fonticola UTAD54". Antimicrobial Agents and Chemotherapy 48 6 (2004): 2321-2324. http://www.scopus.com/inward/record.url?eid=2-s2.0-2542499764&partnerID=MN8TOARS.
    10.1128/AAC.48.6.2321-2324.2004
  133. Henriques, I.S.; Almeida, A.; Cunha, A.; Correia, A.. "Molecular sequence analysis of prokaryotic diversity in the middle and outer sections of the Portuguese estuary Ria de Aveiro". FEMS Microbiology Ecology 49 2 (2004): 269-279. http://www.scopus.com/inward/record.url?eid=2-s2.0-3142782432&partnerID=MN8TOARS.
    10.1016/j.femsec.2004.04.003
  134. Alves, A.; Henriques, I.; Fragoeiro, S.; Santos, C.; Phillips, A.J.L.; Correia, A.. "Applicability of rep-PCR genomic fingerprinting to molecular discrimination of members of the genera Phaeoacremonium and Phaeomoniella". Plant Pathology 53 5 (2004): 629-634. http://www.scopus.com/inward/record.url?eid=2-s2.0-7044246166&partnerID=MN8TOARS.
    10.1111/j.1365-3059.2004.01069.x
  135. Saavedra, M.J.; Peixe, L.; Sousa, J.C.; Henriques, I.; Alves, A.; Correia, A.. "Sfh-I, a subclass B2 metallo-ß-lactamase from a Serratia fonticola environmental isolate". Antimicrobial Agents and Chemotherapy 47 7 (2003): 2330-2333. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038311982&partnerID=MN8TOARS.
    10.1128/AAC.47.7.2330-2333.2003
  136. Alves, A.; Santos, O.; Henriques, I.; Correia, A.. "Evaluation of methods for molecular typing and identification of members of the genus Brevibacterium and other related species". FEMS Microbiology Letters 213 2 (2002): 205-211. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037031136&partnerID=MN8TOARS.
    10.1016/S0378-1097(02)00818-2
  137. Mendo, S.A.L.V.; Henriques, I.S.; Correia, A.C.M.; Duarte, J.M.C.. "Genetic characterization of a new thermotolerant Bacillus licheniformis strain". Current Microbiology 40 2 (2000): 137-139. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033982486&partnerID=MN8TOARS.
    10.1007/s002849910028
Capítulo de livro
  1. Henriques, I; Freitas, Helena; Costa, Joana. "Uma Só Saúde e Saúde Planetária: perspetivas convergentes para a sustentabilidade dos sistemas alimentares.". In “ONE HEALTH”: Um Planeta, Uma Saúde, Uma Ética., 61-76. Portugal: Conselho Nacional de Ética para as Ciências da Vida, 2023.
    Publicado
  2. Pinheiro, Juliana C.; dos Santos, Lays T.; Henriques, Isabel; Silva, Artur; Baraúna, Rafael A.. "Linking the Environmental Microbial Diversity and Antibiotic Resistance". In Microbial Diversity in the Genomic Era, 451-457. Elsevier, 2019.
    10.1016/b978-0-12-814849-5.00025-3
  3. Correia, A.C.M.; Henriques, Isabel; Tacão, Marta; Artur Alves. "Introduction to genetic typing of microorganisms". In Temáticas e Métodos Avançados para o Ensino e Investigação em Biologia, 16-42. Portugal: Afrontamento, 2016.
    Publicado
  4. Henriques, I.S.; Alves, A.; Saavedra, M.J.; Montforts, M.H.M.M.; Correia, A.. "Environmental Antibiotic Resistome: New Insights from Culture-Independent Approaches". In Microbial Diversity in the Genomic Era. 2011.
    10.1002/9781118156247.ch8
  5. Cruz, Andreia; Henriques, Isabel; Correia, A.C.M.; Suzuki, S.; Mendo, S.. "Aeromonas molluscorum Av27: a potential natural tool for TBT decontamination.". In Interdisciplinary Studies on Environmental Chemistry Vol. 3— Biological Responses to Contaminants: From Molecular to Community Level., 37-46. Terrapub, Tokyo, 2010.
    Publicado
  6. Ana Luísa Santos; Inês Batista; Vanessa Oliveira; Henriques, Isabel; Newton G; Adelaide Almeida; Correia, A.C.M.; Ângela Cunha. "Oxidative stress induced by photochemical reactions occurring at the surface microlayer.". In Microorganisms in Industry and Environment: From Scientific and Industrial Research to Consumer Products., 978-981. Singapura: World Scientific Publishing. Singapore., 2010.
    Publicado

Propriedade Intelectual

Registo de direitos de autor
  1. 2013. "Public Web Database INTEGRALL (registered intellectual property n.º 5627/2013) – http://integrall.bio.ua.pt/: database dedicated to integrons and gene cassettes.".
    Registado
Atividades

Orientação

Título / Tema
Papel desempenhado 		Curso (Tipo)
Instituição / Organização
2023 - Atual Going Places - Unsuspicious Biomes as Sources of Innovative Biomolecules. (2022.12620.BD)
Coorientador de Inês Oliveira Costa
 PhD in Biosciences (Doutoramento)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2023 - Atual Analysis of the resistome of the microbial communities present on macroplastics from the Portuguese coast (2022.10874.BD).
Orientador de Cátia Filipa Gaspar Verissímo Costa;
 PhD in Biosciences (Doutoramento)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2021 - Atual Microbiome-based approaches to induce host resistance based on Pine Pitch canker experimental system (ref. 2021.06400.BD)
Orientador de Frederico Tiago Leitão
 PhD in Biosciences (Doutoramento)
Universidade de Coimbra, Portugal
2020 - Atual Effect of anthropogenic pollution on bacterial integron’s dynamics in aquatic systems (SFRH/BD/145147/2019).
Orientador de Rafael Tavares
 PhD in Biosciences (Doutoramento)
Universidade de Coimbra, Portugal
2018 - Atual Role of metals in antibiotic resistance selection in aquatic systems.
Orientador de Patrícia Matos
 PhD in Biology (Doutoramento)
Universidade de Aveiro, Portugal
2020 - 2024 Analysis of microplastics¿ microbiome: role in antibiotic resistance spread (SFRH/BD/144902/2019)
Orientador de Isabel Silva
 PhD in Biosciences (Doutoramento)
Universidade de Coimbra, Portugal
2022 - 2023 Microplastics in rivers and their role in the spread of pathogens and antibiotic resistance.
Orientador de Inês Alçada e Silva
 MSc in Biochemistry (Mestrado)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2022 - 2023 Application of filamentous fungi for sustainable resourse utilization in space habitats.
Coorientador de Inês Pereira de Figueiredo
 MSc in Biochemistry (Mestrado)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2022 - 2023 Involvement of Horizontal Gene Transfer Mechanisms In Antibiotic Resistance Aquisition in Acinetobacter baumanii.
Coorientador
 MSc in Celular and Molecular Biology (Mestrado)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2017 - 2022 Enterobacteriaceae as mediators for carbapenem resistance transfer between environmental and human settings
Orientador de Pedro teixeira
 PhD in Biology and Ecology of Global Changes (Doutoramento)
Universidade de Aveiro, Portugal
2017 - 2022 Effects of nanomaterials on the bacterial community from agricultural soils: nano-agrochemicals and biosolids’ applications
Orientador de Sara Peixoto
 PhD in Biology and Ecology of Global Changes (Doutoramento)
Universidade de Aveiro, Portugal
2016 - 2022 Novel approaches on the characterization of the wastewater resistome: possible implications on human health and water quality management
Coorientador de Jaqueline Rocha
 PhD in Biotechnology (Doutoramento)
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2020 - 2021 Antibiotic resistance and virulence associated to Vibrio spp..
Orientador de Inês Filipa Cavaleiro
 MSc in Biochemistry (Mestrado)
Universidade de Coimbra, Portugal
2020 - 2021 Fatores Imunogénicos para avaliação de risco de infeção por SARS-CoV-2
Coorientador de Rita Marques
 MSc in Biochemistry (Mestrado)
Universidade de Coimbra, Portugal
2016 - 2021 Long term consequences of chemical exposure in zebrafish and potential role of the associated microbiome in the observed toxicity
Orientador de Ana Rita Almeida
 PhD in Biology and Ecology of Global Changes (Doutoramento)
Universidade de Aveiro, Portugal
2014 - 2021 Emergence and dissemination of antibiotic resistance in the environment: origin of resistance genes and role of human activities.
Orientador de Susana Araújo
 PhD in Biology and Ecology of Global Changes (Doutoramento)
Universidade de Aveiro, Portugal
2019 - 2020 Resistance to antibiotics in estuarine bacteria potentially pathogenic of fish and other aquatic animals.
Orientador de Joana Dias
 Master in Biochemistry (Mestrado)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2019 - 2020 Rivers as routes for the spread of antibiotic resistance: Role of Anthropogenic Pressures and Risks to Human Health
Orientador de José Laço
 MSc in Biochemistry (Mestrado)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2019 - 2020 Antibiotic Resistance in Urban Lakes
Coorientador de Nuno Pinto
 MSc in Microbiology (Mestrado)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2018 - 2019 Study of the anaerobic biodegradability of kraft pulp bleaching effluents.
Coorientador de Rita Santos
 MSc in Biotechnology (Mestrado)
Universidade de Aveiro, Portugal
2018 - 2019 Comparative genomic analysis of the Ensifer genus provides insights into the adaptations to cave environments.
Coorientador de Bernardo Silva
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2017 - 2019 Development of laser-induced graphene impedimetric biosensors for Escherichia coli detection.
Coorientador de Ana Moreira
 MSc in Physical Engineering (Mestrado)
Universidade de Aveiro, Portugal
2017 - 2019 Virulence, Survival and Integron-mediated antibiotic resistance in the water compartment: Exploring several aspects that may jeopardize public health
Orientador de Rafael Tavares
 MSc in Microbiology (Mestrado)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2017 - 2019 Microbiome of the rhizosphere of Pinus: impact of Fusarium infection and phosphite amendement
Orientador de Frederico Leitão
 MSc in Microbiology (Mestrado)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2017 - 2018 Role of non-antibiotic contaminants in antibiotic resistance selection in aquatic systems.
Orientador de Isabel Alexandre Teixeira da Silva
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2017 - 2018 Bioinoculantes e biochar na promoção do crescimento de plantas em solos de minas.
Coorientador de Mariana Godinho
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2017 - 2018 Are wastewaters discharges shaping the environmental antibiotic resistome - a metagenomic analysis of bacterial communities from riverine ecosystems
Orientador de Marta Tacão
 Post Doc (Outra)
Universidade de Aveiro, Portugal
2014 - 2018 Studying the role of bacterial communities on Pine Wilt Disease development
Orientador de Marta Salgueiro Alves
 PhD in Biology (Doutoramento)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2014 - 2018 Meta-analysis in aerobic granular sludge bioreactors for wastewater treatment
Orientador de Catarina Amorim
 Post Doc
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2016 - 2017 Microbial community in houses from patients with chronic respiratory diseases in Estarreja.
Orientador de Tatiana Silva
 MSC in Molecular and Cellular Biology (Mestrado)
Universidade de Aveiro, Portugal
2016 - 2017 Molecular characterization of multi-drug resistant clinical isolates.
Orientador de Diana Salvador
 MSc in Molecular and Cellular Biology (Mestrado)
Universidade de Aveiro, Portugal
2013 - 2017 Endophytic bacterial communities of salt marsh plants from Hg-contaminated sites
Coorientador de Cátia Isabel Assis Fidalgo
 PhD in Biology (Doutoramento)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2015 - 2016 Genome wide analysis of antibiotic and metal resistance in Pseudomonas.
Orientador de Pedro Teixeira
 MSc in Biotechnology (Mestrado)
Universidade de Aveiro, Portugal
2015 - 2016 The microbiome of Pinus pinaster.
Coorientador de Helena Lopes
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2015 - 2015 Genomic and lipidomic characterization of multidrug resistant bacteria found in pressure ulcers and diabetic foot infections
Orientador de Cláudia Simões
 Post Doc
Universidade de Aveiro, Portugal
2014 - 2015 Bacterial communities and antibiotic resistance genes in hospital effluents and municipal wastewaters of Aveiro
Coorientador de Ana Coito
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2014 - 2015 Sources of Antibiotic Resistance in the Environment.
Orientador de Maria Vendas
 MSc in Molecular and Cellular Biology (Mestrado)
Universidade de Aveiro, Portugal
2009 - 2015 The resistome of Aeromonas salmonicida unraveled by proteomics
Coorientador de Nádia Osório
 PhD in Biology (Doutoramento)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2008 - 2014 Resistance to last-resort antibiotics in natural environments
Coorientador de Marta Cristina Martins Oliveira Tacão
 PhD in Biology (Doutoramento)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2012 - 2013 Antibiotic Resistance in Escherichia coli isolates from different sources.
Orientador de Marta Salgueiro Alves
 MSc in Biotechnology (Mestrado)
Universidade de Aveiro, Portugal
2012 - 2012 Identification of faecal pollution sources in the Berlenga Island
Orientador de Susana Araújo
 MSc in Applied Biology (Mestrado)
Universidade de Aveiro, Portugal
2011 - 2012 Phenotypical tests to detect antibiotic resistance genes.
Coorientador de Ana Rodrigues
 MSc in Biotechnology (Mestrado)
Universidade de Aveiro, Portugal
2011 - 2012 The soil microbiome: influence of the phytosanitary condition of the cork oak.
Coorientador de Diogo Pinho
 MSc in Biotechnology (Mestrado)
Universidade de Aveiro, Portugal
2007 - 2012 Phylogenetic and functional diversity of estuarine bacterioneuston along a salinity gradient
Coorientador de Juliana Nina Azevedo
 PhD in Biology (Doutoramento)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2010 - 2011 Mercury effect on plant-associated microbial communities.
Coorientador de Edna Almeida
 MSc in Biotechnology (Mestrado)
Universidade de Aveiro, Portugal
2009 - 2010 ESBL in Enterobacteriaceae at the hospital Póvoa de Varzim/Vila do Conde, Portugal.
Orientador de Cristina Sá
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2008 - 2009 Study on serological markers of the hepatitis B virus on a blood donors population.
Coorientador de Cristina Carvalho
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2008 - 2009 Epidemiological study on Chagas disease prevalence in blood donors.
Coorientador de Sandra Neto
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2008 - 2009 Prevalence of urinary infections and susceptibility to antibiotics of uropathogens.
Coorientador de Carlos Correia
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2008 - 2009 The culturable bacterial community of the sea surface microlayer.
Orientador de Isabel Ramos
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2007 - 2008 Development and validation of culture-independent methodologies to assess diversity and dynamics of Aeromonas communities.
Orientador de Vera Calhau
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal
2007 - 2008 Cloning and expression of a putative collagenase of Aeromonas hydrophila.
Coorientador de Eliana Cavaleiro
 MSc in Microbiology (Mestrado)
Universidade de Aveiro, Portugal

Júri de grau académico

Tema
Tipo de participação 		Nome do candidato (Tipo de grau)
Instituição / Organização
2023 Biochemical and structural studies of a novel glucosamine kinase and a unique glycosyltransferase: new antimicrobial opportunities in actinobacterial glycobiology.
Arguente
 Daniela Cristina Nunes Costa (Doutoramento)
Universidade de Coimbra, Portugal
2023 Metagenomic assessment of trophic networks for a sustainable conservation of Cabo Verde seabirds.
Arguente
 Ana Rita Tomé Carreiro (Doutoramento)
Universidade de Coimbra, Portugal
2023 Decrypting the Diversity of Microbiome in Aquaculture
Arguente principal
 Vanessa Salgueiro (Doutoramento)
Universidade Nova de Lisboa Unidade de Ensino e Investigação em Saúde Pública Global, Portugal
2023 Environmental integrons, new insights from natural microbial communities.
Arguente principal
 Eva Sandoval Quintana (Doutoramento)
Université de Pau et des Pays de l¿Adour Collège STEE Sciences et Technologies pour l¿Energie et l¿Environnement, França
2023 Unraveling the contribution of environmental stressors to the selection of multidrug-resistant bacteria: focus on the poultry production chain.
Arguente principal
 Andreia Carina Martins Rebelo Gonçalves (Doutoramento)
Universidade do Porto Faculdade de Farmácia, Portugal
2023 Exploring the Microbial Diversity of Portuguese Saltern Environments
Arguente principal
 Andreia Carina Martins Rebelo Gonçalves (Doutoramento)
Universidade do Porto, Portugal
2022 Effects of nanomaterials on the bacterial community from agricultural soils: nano-agrochemicals and biosolids’ applications.
Orientador
 Sara Peixoto (Doutoramento)
Universidade de Aveiro, Portugal
2022 Enterobacteriaceae as mediators for carbapenem resistance transfer between environmental and human settings.
Orientador
 Pedro Filipe Teixeira (Doutoramento)
Universidade de Aveiro, Portugal
2022 Doutoramento em Ciencias Mariñas, Tecnoloxía e Xestión Effect of increasing nutrient inputs on the taxonomic composition of prokaryote plankton from the Ría de Vigo and the adjacent shelf.
Arguente principal
 Alberto Gutiérrez Barral; (Doutoramento)
Universidade de Vigo, Espanha
2022 Ocorrência de bacilos gram-negativos produtores de betalactamases de espectro estendido nas águas da baía de Guanabara, RJ, Brasil, ao longo de 12 meses.
Arguente principal
 Wellington Felipe da Costa (Doutoramento)
2022 Algae and cyanobacteria biodeterioration within the UNESCO World Heritage site ‘University of Coimbra – Alta and Sofia’: Assessment of natural biocides as novel control strategies.
Arguente
 Fabiana Vanessa Almeida Soares (Doutoramento)
Universidade de Coimbra, Portugal
2021 Long term consequences of chemical exposure in zebrafish and potential role of the associated microbiome in the observed toxicity.
Orientador
 Ana Rita Almeida (Doutoramento)
Universidade de Aveiro, Portugal
2021 Classification and identification of thermophilic organisms isolated from São Pedro do Sul hot spring and revision of the classification of genus meiothermus: integration of genomics into prokaryotic taxonomy.
Arguente
 Luciana Costa de Albuquerque Pinto (Doutoramento)
Universidade de Coimbra, Portugal
2021 Optimizing the scale up biochemical platform biorefinery for lactic acid production from lignocellulosic biomass.
Arguente
 Ana Rita Pontes Pereira (Doutoramento)
Universidade de Coimbra, Portugal
2021 The role of fungi on monumental stone biodeterioration within the UNESCO World Heritage site "University of Coimbra - Alta and Sofia"
Arguente
 João Trovão Lima Simões Antunes (Doutoramento)
Universidade de Coimbra, Portugal
2021 Emergence and dissemination of antibiotic resistance in the environment: origin of resistance genes and role of human activities.
Orientador
 Susana Manso Araújo (Doutoramento)
Universidade de Aveiro, Portugal
2020 ongINg_nano: long term and multIgeNerational effects of nanomaterials in terrestrial invertebrates
Arguente
 Rita Carina Saraiva Silva Bicho (Doutoramento)
Universidade de Aveiro Departamento de Biologia, Portugal
2020 An investigation of the presence of antibiotic resistance determinants and resistant bacteria in the Norwegian environment by examination of sludge from water treatment plants.
Arguente principal
 Ingvild Falkum Ullmann; (Doutoramento)
OsloMet - storbyuniversitetet, Noruega
2019 Fluoroquinolone antibiotics in the environment: biodegradation stdies and presence in several environmental matrices
Arguente principal
 Alexandra Maia (Doutoramento)
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2019 Carbapenemase producers of Pseudomonas aeruginosa: lights on new mobile genetic elements.
Arguente principal
 João Francisco Botelho (Doutoramento)
Universidade do Porto Faculdade de Farmácia, Portugal
2018 Studying the role of bacterial communities on Pine Wilt Disease development
Orientador
 Marta Salgueiro Alves (Doutoramento)
Universidade de Aveiro, Portugal
2016 Extending the knowledge on drivers of intrinsic and aquired resistance to cephalosporinsand quinolones in Enterobacteriaceae
Arguente principal
 Teresa Ribeiro (Doutoramento)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 Assessing antibiotic resistance in Gram negative bacteria from animals and the wider environment.
Arguente principal
 Daniela Jones Dias (Doutoramento)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2016 The role of uncommon bacteria in catheter-associated urinary tract infections
Arguente principal
 Andreia Mateus Azevedo (Doutoramento)
Universidade do Porto Faculdade de Engenharia, Portugal
2016 Contribution of biocides to the selection of Salmonella non-typhoid resistant to antibiotics: a multilayerd approach.
Arguente principal
 Joana Mourão (Doutoramento)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 Tracking antibiotic Resistance from hospital effluents to the surrounding environment.
Arguente principal
 Ana Rita varela (Doutoramento)
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2014 Tolerância a biocidas e dispersão de resistência a antibióticos: uma abordagem fenotípica e molecular em Enterococcus spp. De diferentes origens.
Arguente principal
 Maria Eduarda Silveira (Doutoramento)
Universidade do Porto Faculdade de Farmácia, Portugal
2014 Brazilian savanna forest: conservation, medicinal reservoir and bioprospecting.
Arguente principal
 Nelita Gonçalves de Bessa (Doutoramento)
Universidade de Aveiro, Portugal
2012 Resistência ao tributilestanho (TBT) em Aeromonas molluscorum Av27
Arguente principal
 Andreia Henriques Cruz (Doutoramento)
Universidade de Aveiro, Portugal
2012 Salubridade microbiológica dos bivalves - relevância na segurança alimentar
Arguente
 Jacinta Oliveira (Doutoramento)
Universidade de Aveiro, Portugal
2012 Phylogenetic and functional diversity of estuarine bacterioneuston along a salinity gradient
Orientador
 Juliana Nina Azevedo (Doutoramento)
Universidade de Aveiro, Portugal
2011 Molecular diversity and transferability of integrons from wastewaters.
Arguente
 Alexandra Moura (Doutoramento)
Universidade de Aveiro, Portugal
2010 ISCR and their association with antibiotic resistance genes
Arguente principal
 Sónia Ferreira (Doutoramento)
Universidade de Aveiro, Portugal

Arbitragem científica em revista

Nome da revista (ISSN) Editora
2023 - Atual Antibiotics MDPI
2021 - Atual Frontiers in Microbiology (1664-302X) Frontiers Media SA
2020 - Atual Genes MDPI
2016 - Atual BMC Genomics (1471-2164) Springer (Biomed Central Ltd.)

Comissão de avaliação

Descrição da atividade
Tipo de assessoria 		Instituição / Organização Entidade financiadora
2023 - Atual Internal Expert Reviewer of the Research Foundation – Flanders (FWO; https://www.fwo.be/en/); panel MED3PROJECTS - Immunology and Microbiology;
Avaliador
 Research Foundation – Flanders (FWO), Bélgica Research Foundation – Flanders (FWO)
2023 - 2023 Reviewer of research proposals for the European Science Foundation - A*MIDEX International Research and Training (Structuring of international research-training projects; https://www.univ-amu.fr). European Science Foundation, França European Science Foundation
2022 - 2022 Reviewer of research proposals for the National Science Centre (Poland; https://www.ncn.gov.pl/en) under the Call OPUS2022. Narodowe Centrum Nauki, Polónia Narodowe Centrum Nauki
2022 - 2022 Reviewer of research proposals for the Rovaltain Foundation (Valence, França; https://fcsrovaltain.org/), under the programme Environmental Toxicology and Ecotoxicology Rovaltain Foundation, França Rovaltain Foundation
2021 - 2021 Reviewer of research proposals for The Research Foundation – Flanders (FWO; https://www.fwo.be/en/); FWO Call for Fundamental Research Projects 2021 Research Foundation – Flanders (FWO), Bélgica Research Foundation – Flanders (FWO)
2020 - 2020 Reviewer of research proposals for the Deutsche Forschungsgemeinschaft (German Research Foundation; www.dfg.de/en/index.jsp). Deutsche Forschungsgemeinschaft, Alemanha Deutsche Forschungsgemeinschaft
2018 - 2018 Reviewer of research grant applications for the Biotechnology and Biological Sciences Research Council (BBSRC) of the UK (www.nerc.ac.uk) in the 2018 call. Biotechnology and Biological Sciences Research Council, Reino Unido Biotechnology and Biological Sciences Research Council
2017 - 2017 Reviewer of research grant applications for the Welcome Trust/DBT India Alliance (http://www.wellcomedbt.org/). Wellcome Trust DBT India Alliance, Índia Wellcome Trust DBT India Alliance
2016 - 2016 Reviewer of research proposals within the Bilateral Cooperation (Programme for Cooperation in Science between Portugal and Poland) - FCT (Fundação para a Ciência e a Tecnologia). Fundação para a Ciência e a Tecnologia, Portugal Fundação para a Ciência e a Tecnologia
2016 - 2016 Reviewer of research grant applications for the Natural Environment Research Council of the UK (www.nerc.ac.uk) in the call titled ‘Antimicrobial Resistance in the Real World’. Natural Environment Research Council, Reino Unido Natural Environment Research Council
2015 - 2015 Reviewer of research proposals within the programme “Luso-German Integrated Actions” organized by CRUP (Conselho de Reitores das Universidades Portuguesas). Conselho de Reitores das Universidades Portuguesas, Portugal Conselho de Reitores das Universidades Portuguesas
2015 - 2015 Reviewer of research proposals within the programme “Luso-French Integrated Actions” organized by CRUP (Conselho de Reitores das Universidades Portuguesas). Conselho de Reitores das Universidades Portuguesas, Portugal Conselho de Reitores das Universidades Portuguesas
2014 - 2014 Reviewer of research grant applications for the European Society of Clinical Microbiology and Infectious Diseases (https://www.escmid.org/profession_career/ awards_grants/ research _ grants /reviewers/). European Society of Clinical Microbiology and Infectious Diseases, Suiça European Society of Clinical Microbiology and Infectious Diseases

Membro de comissão

Descrição da atividade
Tipo de participação 		Instituição / Organização
2021 - Atual Member of the Scientific Committee of the 17th Annual Meeting of the Portuguese Association for Evolutionary Biology (XVII ENBE), 16th-17th December 2021, Online. (https://enbe2021.rd.ciencias.ulisboa.pt/about-us)
Membro
 Universidade de Lisboa, Portugal
2018/10/10 - 2018/10/12 Member of the Scientific Committee of the XENOWAC II Conference, held in Limassol, Cyprus (http://www.xenowac2018.com/)
Membro
 University of Cyprus, Chipre
2015 - 2018 Coordinator of the Biology Department Scientific Comittee for the implementation of “Centro de Ciência Viva de Vouzela” in cooperation with Câmara Municipal de Vouzela and Fábrica Ciência Viva
Coordenador
 Universidade de Aveiro, Portugal
2014 - 2018 Member substitute of the Management Committee of the COST action ES1403 “NEREUS-new and emerging challenges and opportunities in wastewater reuse”. http://www.cost.eu/domains_actions/essem/Actions/ ES1403?parties
Membro
 European Union, Bélgica
2017/11 - 2017/11 Member of the Scientific Committee of the 1st International Congress on Biochemistry and Microbiology Applied Technologies [BMAT-2017], Hammamet, Tunisia. Euro-African Association of Environnement (AEAE), Tunísia
2012 - 2013 Member of the COST action TD0803 “DARE–Detecting Antibiotic Resistance in Europe”. http://www.cost-dare.eu/
Membro
 European Union, Bélgica
Distinções

Outra distinção

2012 Scholarship "Special Visiting Researcher"
2008 IUMS meeting attendance grant