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Isabel Henriques is an Associate Professor at the University of Coimbra (UC). As a microbiologist, she explores the intersection between environment and health, applying One Health principles, with a special focus on antimicrobial resistance ecology. She co-coordinates the Research Group One Health at Centre for Functional Ecology (CFE) - Science for People & the Planet and she co-coordinates the Thematic Line Society and Environmental Health at Associate Laboratory TERRA. She graduated in Biology (1997), earned an MSc in Molecular Microbiology (2001) and completed her PhD in Biology in 2006 at the University of Aveiro (UA). For 6 years she was a post-doc fellow at Centre for Environmental and Marine Studies (CESAM-UA) and from 2012 to 2015 she acted as Special Visiting Researcher at the Federal University of Pará (Brazil). She secured an Assistant Researcher position in 2013 at CESAM, under the highly competitive program “Investigador FCT“. In 2018, she moved to the University of Coimbra (UC) where she became an Assistant Professor at Department of Life Sciences (DCV), later tenured as Associate Professor (2022). She leads the MicroResist Lab, with 6 PhD students and 3 MSc students; previously I trained 3 post-docs, 10 PhD and 30 MSc students. Published 130 WoS papers, among other outputs. Coordinated 6 research projects, contributing to several others. Served on scientific committees, Editorial Boards (e.g., Frontiers in Microbiology, BMC Genomics, and Antibiotics) and evaluating panels of grant proposals. She participated in 27 PhD juries in 9 universities across 5 countries. She taught and developed many Microbiology courses, directed the MSc in Microbiology at UA (2017-2018), and currently directs the PhD in Biosciences (DCV-UC; since 2019). She was member of the Scientific Council of UA (2018) and is a member of the Scientific Committee of DCV (since 2019).
Identification

Personal identification

Full name
Isabel Henriques
Gender
Female

Citation names

  • Henriques, Isabel
  • Henriques, I
  • Henriques, I S

Author identifiers

Ciência ID
F516-BFA6-1588
ORCID iD
0000-0001-7717-4939
Researcher Id
B-1667-2008

Email addresses

  • isabel.henriques@uc.pt (Professional)

Telephones

Telephone
  • 239240795 (Professional)

Addresses

  • Universidade de Coimbra. Dept. de Ciências da Vida, Calçada Martim de Freitas, 3000-456 , Coimbra, Coimbra, Portugal (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Microbiology

Languages

Language Speaking Reading Writing Listening Peer-review
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Intermediate (B1) Intermediate (B1) Beginner (A1) Intermediate (B1)
Portuguese (Mother tongue)
Spanish; Castilian Intermediate (B1) Intermediate (B1) Beginner (A1) Intermediate (B1)
Education
Degree Classification
2006
Concluded
Biology (Doutoramento)
Universidade de Aveiro, Portugal
2001
Concluded
Molecular Microbiology (Mestrado)
Universidade de Aveiro, Portugal
1992 - 1997
Concluded
Biology (Licenciatura)
Universidade de Aveiro, Portugal
Affiliation

Science

Category
Host institution
Employer
2013 - 2018 Researcher (Research) Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2012 - 2015 Visiting Researcher (Research) Universidade Federal do Pará, Brazil
2006 - 2013 Postdoc (Research) Universidade de Aveiro, Portugal

Teaching in Higher Education

Category
Host institution
Employer
2022/12 - Current Associate Professor (University Teacher) Universidade de Coimbra, Portugal
2018 - 2022/12 Assistant Professor (University Teacher) Universidade de Coimbra, Portugal
2007 - 2013 Invited Assistant Professor (University Teacher) Universidade de Aveiro, Portugal

Positions / Appointments

Category
Host institution
Employer
2023 - Current Coordinator of the Research Group One Health Universidade de Coimbra Centre for Functional Ecology - Science for People & the Planet, Portugal
2021/11 - Current Member of the Scientific Committee of the Department of Life Sciences Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2019 - Current Coordinator of the PhD in Biosciences Universidade de Coimbra, Portugal
2016 - 2020 Coordinator of the Microbial and Cellular Biology Laboratory Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2017 - 2018 Member of the Scientific Council of the University of Aveiro Universidade de Aveiro, Portugal
2017 - 2018 Coordinator of the Master's Degree in Microbiology Universidade de Aveiro, Portugal
2017 - 2018 Coordinator of the Environmental Biology and Health Research Line Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal

Others

Category
Host institution
Employer
1997 - 1998 High School Teacher Ministério da Educação, Portugal
Projects

Contract

Designation Funders
2024 - 2024 Exploiting the power of Portuguese macroalgae and halophytes: A promising approach to tackle antibiotic resistance.
FAM FOUNDATION
Researcher
Universidade de Coimbra Centre for Functional Ecology - Science for People & the Planet, Portugal
Ongoing
2022 - 2024 MICRANT: Microplastics in Estarreja rivers and their role in the spread of pathogens and antibiotic resistance
MICRANT
Principal investigator
Labex DRIIHM
Ongoing
2018 - 2021 GREAT: Granular microalgae- bacterial sludge for aquaculture wastewater treatment.
POCI-01-0145-FEDER-029970
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2018 - 2021 Resilience of anthozoan corals to deep-sea mining, a holobiont approach
PTDC/BIA-BMA/29861/2017
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2018 - 2021 ZnO nanostructures and ZnO/nanocarbon composites for biosensor applications
PTDC/NAN-MAT/28755/2017
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2018 - 2021 METOXCLIM: Metal contamination in a global warming perspective: effects on soil properties and relation with toxicity changes
POCI-01-0145-FEDER-029557
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2016 - 2019 GENetic and clinIcAL markers in COPD trajectory
Researcher
Fundação para a Ciência e a Tecnologia
2014 - 2019 Antibiotic resistance in aquatic systems: quantify risks and outline solutions
Principal investigator
Fundação para a Ciência e a Tecnologia
2017 - 2018 ARTEMan: Antibiotic resistance transferability between environmental and human settings
4.4.1.00 CAPES
Principal investigator
Fundação para a Ciência e a Tecnologia
Concluded
2014 - 2017 Stopping Antibiotic Resistance Evolution
Principal investigator
Universidade de Aveiro, Portugal
Fundação para a Ciência e a Tecnologia
2014 - 2015 REFRESH: Minimizing microbial hazards in vegetables cultivated in the Estarreja municipality.
REFRESH
Principal investigator
Labex DRIIHM
Concluded
2013 - 2015 Spatial and temporal analysis of microbial community in Pine Wilt Disease
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2012 - 2015 PhytoMarsh - The phytosphere of salt-marsh plants: an underexplored microbial hot-spot
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2013 - 2014 ARISKA: Antibiotic Resistance in the Antuã River: assessing risks to public health.
ARISKA
Principal investigator
Labex DRIIHM
Concluded
2010 - 2013 TBTRESENSE - TBT bioremediation and development of biosensor for in situ detection of tributyltin (TBT) in the environment
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2010 - 2013 SEAGULL - Identification of nonpoint sources of faecal pollution in a natural environment: contributing data for risk assessment.
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2010 - 2013 FUBIA: Soil Function-Biodiversity relationship And regional variation
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2008 - 2012 The role of salt marsh plants on mercury cycle: identifying plant-bacteria-Hg interactions critical for ecosystem remediation (MARMER)
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2005 - 2008 Constructed wetlands for industrial wastewater treatment
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2005 - 2007 Isolation and characterization of tributyltin (TBT) resistance genes in marine bacteria
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Outputs

Publications

Book chapter
  1. Henriques, I; Freitas, Helena; Costa, Joana. "Uma Só Saúde e Saúde Planetária: perspetivas convergentes para a sustentabilidade dos sistemas alimentares.". In “ONE HEALTH”: Um Planeta, Uma Saúde, Uma Ética., 61-76. Portugal: Conselho Nacional de Ética para as Ciências da Vida, 2023.
    Published
  2. Pinheiro, Juliana C.; dos Santos, Lays T.; Henriques, Isabel; Silva, Artur; Baraúna, Rafael A.. "Linking the Environmental Microbial Diversity and Antibiotic Resistance". In Microbial Diversity in the Genomic Era, 451-457. Elsevier, 2019.
    10.1016/b978-0-12-814849-5.00025-3
  3. Correia, A.C.M.; Henriques, Isabel; Tacão, Marta; Artur Alves. "Introduction to genetic typing of microorganisms". In Temáticas e Métodos Avançados para o Ensino e Investigação em Biologia, 16-42. Portugal: Afrontamento, 2016.
    Published
  4. Henriques, I.S.; Alves, A.; Saavedra, M.J.; Montforts, M.H.M.M.; Correia, A.. "Environmental Antibiotic Resistome: New Insights from Culture-Independent Approaches". In Microbial Diversity in the Genomic Era. 2011.
    10.1002/9781118156247.ch8
  5. Cruz, Andreia; Henriques, Isabel; Correia, A.C.M.; Suzuki, S.; Mendo, S.. "Aeromonas molluscorum Av27: a potential natural tool for TBT decontamination.". In Interdisciplinary Studies on Environmental Chemistry Vol. 3— Biological Responses to Contaminants: From Molecular to Community Level., 37-46. Terrapub, Tokyo, 2010.
    Published
  6. Ana Luísa Santos; Inês Batista; Vanessa Oliveira; Henriques, Isabel; Newton G; Adelaide Almeida; Correia, A.C.M.; Ângela Cunha. "Oxidative stress induced by photochemical reactions occurring at the surface microlayer.". In Microorganisms in Industry and Environment: From Scientific and Industrial Research to Consumer Products., 978-981. Singapura: World Scientific Publishing. Singapore., 2010.
    Published
Journal article
  1. Isabel Silva; Marta Alves; Catarina Malheiro; Ana Rita R. Silva; Susana Loureiro; Isabel Henriques; M. Nazaret González-Alcaraz. "Structural and Functional Shifts in the Microbial Community of a Heavy Metal-Contaminated Soil Exposed to Short-Term Changes in Air Temperature, Soil Moisture and UV Radiation". Genes (2024): https://doi.org/10.3390/genes15010107.
    10.3390/genes15010107
  2. Isabel Silva; Elsa T. Rodrigues; Marta Tacão; Isabel Henriques. "Microplastics accumulate priority antibiotic-resistant pathogens: Evidence from the riverine plastisphere". Environmental Pollution (2023): https://doi.org/10.1016/j.envpol.2023.121995.
    10.1016/j.envpol.2023.121995
  3. Oliveira, Ana S.; Alves, Marta; Leitão, Frederico; Tacão, Marta; Henriques, Isabel; Castro, Paula M.L.; Amorim, Catarina L.. "Bioremediation of coastal aquaculture effluents spiked with florfenicol using microalgae-based granular sludge – a promising solution for recirculating aquaculture systems". Water Research 233 (2023): 119733. http://dx.doi.org/10.1016/j.watres.2023.119733.
    10.1016/j.watres.2023.119733
  4. Rafael D. S. Tavares; Marta Tacão; Elmano Ramalheira; Sónia Ferreira; Isabel Henriques. "Report and Comparative Genomics of an NDM-5-Producing Escherichia coli in a Portuguese Hospital: Complex Class 1 Integrons as Important Players in blaNDM Spread". Microorganisms (2022): https://doi.org/10.3390/microorganisms10112243.
    10.3390/microorganisms10112243
  5. Marta Tacão; José Laço; Pedro Teixeira; Isabel Henriques. "CTX-M-Producing Bacteria Isolated from a Highly Polluted River System in Portugal". International Journal of Environmental Research and Public Health (2022): https://doi.org/10.3390/ijerph191911858.
    10.3390/ijerph191911858
  6. Frederico Leitão; Glória Pinto; Joana Amaral; Pedro Monteiro; Isabel Henriques. "New insights into the role of constitutive bacterial rhizobiome and phenolic compounds in two Pinus spp. with contrasting susceptibility to pine pitch canker". Tree Physiology (2022): https://doi.org/10.1093/treephys/tpab119.
    10.1093/treephys/tpab119
  7. Rocha, Jaqueline; Henriques, Isabel; Gomila, Margarita; Manaia, Célia M.. "Common and distinctive genomic features of Klebsiella pneumoniae thriving in the natural environment or in clinical settings". Scientific Reports 12 1 (2022): http://dx.doi.org/10.1038/s41598-022-14547-6.
    10.1038/s41598-022-14547-6
  8. Teixeira, Pedro; Pinto, Nuno; Henriques, Isabel; Tacão, Marta. "KPC-3-, GES-5-, and VIM-1-Producing Enterobacterales Isolated from Urban Ponds". International Journal of Environmental Research and Public Health 19 10 (2022): 5848. http://dx.doi.org/10.3390/ijerph19105848.
    10.3390/ijerph19105848
  9. Silva, Isabel; Alves, Marta; Malheiro, Catarina; Silva, Ana Rita R.; Loureiro, Susana; Henriques, Isabel; González-Alcaraz, M. Nazaret. "Short-Term Responses of Soil Microbial Communities to Changes in Air Temperature, Soil Moisture and UV Radiation". Genes 13 5 (2022): 850. http://dx.doi.org/10.3390/genes13050850.
    10.3390/genes13050850
  10. Pedro Teixeira; Marta Tacão; Isabel Henriques. "Occurrence and distribution of Carbapenem-resistant Enterobacterales and carbapenemase genes along a highly polluted hydrographic basin". Environmental Pollution 300 (2022): 118958-118958. https://doi.org/10.1016/j.envpol.2022.118958.
    10.1016/j.envpol.2022.118958
  11. Rodrigues, Luís; Coelho, Elisabete; Madeira, Renata; Teixeira, Pedro; Henriques, Isabel; Coimbra, Manuel A.. "Food Ingredients Derived from Lemongrass Byproduct Hydrodistillation: Essential Oil, Hydrolate, and Decoction". Molecules 27 8 (2022): 2493. http://dx.doi.org/10.3390/molecules27082493.
    10.3390/molecules27082493
  12. Quintanilla, Elena; Rodrigues, Clara F.; Henriques, Isabel; Hilário, Ana. "Microbial Associations of Abyssal Gorgonians and Anemones (>4,000 m Depth) at the Clarion-Clipperton Fracture Zone". Frontiers in Microbiology 13 (2022): http://dx.doi.org/10.3389/fmicb.2022.828469.
    10.3389/fmicb.2022.828469
  13. Rocha, Jaqueline; Ferreira, Catarina; Mil-Homens, Dalila; Busquets, Antonio; Fialho, Arsénio M.; Henriques, Isabel; Gomila, Margarita; Manaia, Célia M.. "Third generation cephalosporin-resistant Klebsiella pneumoniae thriving in patients and in wastewater: what do they have in common?". BMC Genomics 23 1 (2022): http://dx.doi.org/10.1186/s12864-021-08279-6.
    10.1186/s12864-021-08279-6
  14. Peixoto, Sara; Loureiro, Susana; Henriques, Isabel. "The impact of silver sulfide nanoparticles and silver ions in soil microbiome". Journal of Hazardous Materials 422 (2022): 126793. http://dx.doi.org/10.1016/j.jhazmat.2021.126793.
    10.1016/j.jhazmat.2021.126793
  15. Peixoto, Sara; Oliveira, Jacinta M.M.; Henriques, Isabel; Morgado, Rui G.; Soares, Amadeu M.V.M.; Loureiro, Susana. "Pollution- induced community tolerance framework - disc diffusion method to assess the impact of silver nanoparticles in soils: Potential relevance for risk assessment". Applied Soil Ecology 169 (2022): 104185. http://dx.doi.org/10.1016/j.apsoil.2021.104185.
    10.1016/j.apsoil.2021.104185
  16. Jacinta M. M. Oliveira; Isabel Henriques; Daniel S. Read; Hyun S. Gweon; Rui G. Morgado; Sara Peixoto; António Correia; Amadeu M. V. M. Soares; Susana Loureiro. "Gut and faecal bacterial community of the terrestrial isopod Porcellionides pruinosus: potential use for monitoring exposure scenarios". Ecotoxicology (2021): https://doi.org/10.1007/s10646-021-02477-4.
    10.1007/s10646-021-02477-4
  17. S. Araújo; S. R. Azenha; I. Henriques; M. Tacão. "qnrA gene diversity in Shewanella spp.". Microbiology (2021): https://doi.org/10.1099/mic.0.001118.
    10.1099/mic.0.001118
  18. Araújo, S.; Sousa, M.; Tacão, M.; Baraúna, R.A.; Silva, A.; Ramos, R.; Alves, A.; Manaia, C.M.; Henriques, I.. "Carbapenem-resistant bacteria over a wastewater treatment process: Carbapenem-resistant Enterobacteriaceae in untreated wastewater and intrinsically-resistant bacteria in final effluent". Science of The Total Environment 782 (2021): 146892. http://dx.doi.org/10.1016/j.scitotenv.2021.146892.
    10.1016/j.scitotenv.2021.146892
  19. Araújo, Susana; Tacão, Marta; Baraúna, Rafael; Ramos, Rommel; Silva, Artur; Henriques, Isabel. "Genome analysis of two multidrug-resistant Escherichia coli O8:H9-ST48 strains isolated from lettuce". Gene 785 (2021): 145603. http://dx.doi.org/10.1016/j.gene.2021.145603.
    10.1016/j.gene.2021.145603
  20. Antonieta Gabriel; Sara Costa; Isabel Henriques; Isabel Lopes. "Effects of Long-Term Exposure to Increased Salinity on the Amphibian Skin Bacterium Erwinia toletana". Archives of Environmental Contamination and Toxicology (2021): https://doi.org/10.1007/s00244-021-00845-z.
    10.1007/s00244-021-00845-z
  21. Ana Rita Almeida; Marta Tacão; Joana Soares; Inês Domingues; Isabel Henriques. "Tetracycline-Resistant Bacteria Selected from Water and Zebrafish after Antibiotic Exposure". International Journal of Environmental Research and Public Health (2021): https://doi.org/10.3390/ijerph18063218.
    10.3390/ijerph18063218
  22. Almeida, Ana Rita; Domingues, Inês; Henriques, Isabel. "Zebrafish and water microbiome recovery after oxytetracycline exposure". Environmental Pollution 272 (2021): 116371. http://dx.doi.org/10.1016/j.envpol.2020.116371.
    10.1016/j.envpol.2020.116371
  23. Ralf Lopes; Danny Fuentes-Castillo; Herrison Fontana; Larissa Rodrigues; Karine Dantas; Louise Cerdeira; Isabel Henriques; Nilton Lincopan; Zackery Bulman. "Endophytic Lifestyle of Global Clones of Extended-Spectrum ß-Lactamase-Producing Priority Pathogens in Fresh Vegetables: a Trojan Horse Strategy Favoring Human Colonization?". mSystems (2021): https://doi.org/10.1128/mSystems.01125-20.
    10.1128/mSystems.01125-20
  24. Isabel Silva; Marta Tacão; Isabel Henriques. "Selection of antibiotic resistance by metals in a riverine bacterial community". Chemosphere 263 (2021): 127936-127936. https://doi.org/10.1016/j.chemosphere.2020.127936.
    10.1016/j.chemosphere.2020.127936
  25. Peixoto, S.; Khodaparast, Z.; Cornelis, G.; Lahive, E.; Green Etxabe, A.; Baccaro, M.; Papadiamantis, A.G.; et al. "Impact of Ag2S NPs on soil bacterial community – A terrestrial mesocosm approach". Ecotoxicology and Environmental Safety 206 (2021): 111405. http://dx.doi.org/10.1016/j.ecoenv.2020.111405.
    10.1016/j.ecoenv.2020.111405
  26. Peixoto, Sara; Henriques, Isabel; Loureiro, Susana. "Long-term effects of Cu(OH)2 nanopesticide exposure on soil microbial communities". Environmental Pollution 269 (2021): 116113. http://dx.doi.org/10.1016/j.envpol.2020.116113.
    10.1016/j.envpol.2020.116113
  27. Dias, Marcela França; de Castro, Giovanni Marques; de Paiva, Magna Cristina; de Paula Reis, Mariana; Facchin, Susanne; do Carmo, Anderson Oliveira; Alves, Marta Salgueiro; et al. "Exploring antibiotic resistance in environmental integron-cassettes through intI-attC amplicons deep sequencing". Brazilian Journal of Microbiology (2020): http://dx.doi.org/10.1007/s42770-020-00409-8.
    10.1007/s42770-020-00409-8
  28. Marano, Roberto B.M.; Fernandes, Telma; Manaia, Célia M.; Nunes, Olga; Morrison, Donald; Berendonk, Thomas U.; Kreuzinger, Norbert; et al. "A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants". Environment International 144 (2020): 106035. http://dx.doi.org/10.1016/j.envint.2020.106035.
    10.1016/j.envint.2020.106035
  29. Oliveira, Amanda M.S.; Baraúna, Rafael A.; Marcon, Davi J.; Lago, Letícia A.B.; Silva, Artur; Lusio, Joana; Tavares, Rafael D.S.; et al. "Occurrence, antibiotic-resistance and virulence of E. coli strains isolated from mangrove oysters (Crassostrea gasar) farmed in estuaries of Amazonia". Marine Pollution Bulletin 157 (2020): 111302. http://dx.doi.org/10.1016/j.marpolbul.2020.111302.
    10.1016/j.marpolbul.2020.111302
  30. Rodriguez-Mozaz, Sara; Vaz-Moreira, Ivone; Varela Della Giustina, Saulo; Llorca, Marta; Barceló, Damià; Schubert, Sara; Berendonk, Thomas U.; et al. "Antibiotic residues in final effluents of European wastewater treatment plants and their impact on the aquatic environment". Environment International 140 (2020): 105733. http://dx.doi.org/10.1016/j.envint.2020.105733.
    10.1016/j.envint.2020.105733
  31. Tavares, Rafael D.S.; Tacão, Marta; Figueiredo, Ana S.; Duarte, Ana S.; Esposito, Fernanda; Lincopan, Nilton; Manaia, Célia M.; Henriques, Isabel. "Genotypic and phenotypic traits of blaCTX-M-carrying Escherichia coli strains from an UV-C-treated wastewater effluent". Water Research (2020): 116079. http://dx.doi.org/10.1016/j.watres.2020.116079.
    In press • 10.1016/j.watres.2020.116079
  32. Teixeira, Pedro; Tacão, Marta; Pureza, Leide; Gonçalves, Joana; Silva, Artur; Cruz-Schneider, Maria Paula; Henriques, Isabel. "Occurrence of carbapenemase-producing Enterobacteriaceae in a Portuguese river: blaNDM, blaKPC and blaGES among the detected genes". Environmental Pollution 260 (2020): 113913. http://dx.doi.org/10.1016/j.envpol.2020.113913.
    10.1016/j.envpol.2020.113913
  33. Teixeira, Pedro; Tacão, Marta; Baraúna, Rafael A.; Silva, Artur; Henriques, Isabel. "Genomic analysis of Chromobacterium haemolyticum: insights into the species resistome, virulence determinants and genome plasticity". Molecular Genetics and Genomics (2020): http://dx.doi.org/10.1007/s00438-020-01676-8.
    10.1007/s00438-020-01676-8
  34. Alves, Jorianne; Dias, Larissa; Mateus, Jackeline; Marques, Joana; Graças, Diego; Ramos, Rommel; Seldin, Lucy; et al. "Resistome in Lake Bolonha, Brazilian Amazon: Identification of Genes Related to Resistance to Broad-Spectrum Antibiotics". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.00067.
    10.3389/fmicb.2020.00067
  35. Marta Salgueiro Alves; Anabela Pereira; Cláudia Vicente; Manuel Mota; Isabel Henriques. "Pseudomonas associated with Bursaphelenchus xylophilus, its insect vector and the host tree: A role in pine wilt disease?". Forest Pathology (2019): e12564-e12564. https://doi.org/10.1111/efp.12564.
    10.1111/efp.12564
  36. Almeida, A.R.; Tacão, M.; Machado, A.L.; Golovko, O.; Zlabek, V.; Domingues, I.; Henriques, I.. "Long-term effects of oxytetracycline exposure in zebrafish: A multi-level perspective". Chemosphere 222 (2019): 333-344. http://www.scopus.com/inward/record.url?eid=2-s2.0-85060692567&partnerID=MN8TOARS.
    10.1016/j.chemosphere.2019.01.147
  37. Fidalgo, C.; Proença, D.N.; Morais, P.V.; Henriques, I.; Alves, A.. "The endosphere of the salt marsh plant Halimione portulacoides is a diversity hotspot for the genus Salinicola: description of five novel species Salinicola halimionae sp. nov., Salinicola aestuarinus sp. nov., Salinicola endophyticus sp. nov., Salinicola halophyticus sp. nov. and Salinicola lusitanus sp. nov". International journal of systematic and evolutionary microbiology 69 1 (2019): 46-62. http://www.scopus.com/inward/record.url?eid=2-s2.0-85059493404&partnerID=MN8TOARS.
    10.1099/ijsem.0.003061
  38. Almeida, A.R.; Alves, M.; Domingues, I.; Henriques, I.. "The impact of antibiotic exposure in water and zebrafish gut microbiomes: A 16S rRNA gene-based metagenomic analysis". Ecotoxicology and Environmental Safety 186 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85073241872&partnerID=MN8TOARS.
    10.1016/j.ecoenv.2019.109771
  39. Santos, M.; Peixoto, S.; Pereira, J.L.; Luís, A.T.; Henriques, I.; Gonçalves, F.J.M.; Pereira, M.J.; Oliveira, H.; Vidal, T.. "Using flow cytometry for bacterioplankton community analysis as a complementary tool to Water Framework Directive to signal putatively impacted sites". Science of the Total Environment 695 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85070614907&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2019.133754
  40. Freitas, D.Y.; Araújo, S.; Folador, A.R.C.; Ramos, R.T.J.; Azevedo, J.S.N.; Tacão, M.; Silva, A.; Henriques, I.; Baraúna, R.A.. "Extended spectrum beta-lactamase-producing gram-negative bacteria recovered from an amazonian lake near the city of Belém, Brazil". Frontiers in Microbiology 10 FEB (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85065914157&partnerID=MN8TOARS.
    10.3389/fmicb.2019.00364
  41. Pärnänen, K.M.M.; Narciso-Da-Rocha, C.; Kneis, D.; Berendonk, T.U.; Cacace, D.; Do, T.T.; Elpers, C.; et al. "Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence". Science Advances 5 3 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85064041764&partnerID=MN8TOARS.
    10.1126/sciadv.aau9124
  42. Santos, J.D.C.; Coelho, E.; Silva, R.; Passos, C.P.; Teixeira, P.; Henriques, I.; Coimbra, M.A.. "Chemical composition and antimicrobial activity of Satureja montana byproducts essential oils". Industrial Crops and Products 137 (2019): 541-548. http://www.scopus.com/inward/record.url?eid=2-s2.0-85066291640&partnerID=MN8TOARS.
    10.1016/j.indcrop.2019.05.058
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  99. Azevedo, J.S.N.; Ramos, I.; Araújo, S.; Oliveira, C.S.; Correia, A.; Henriques, I.S.. "Spatial and temporal analysis of estuarine bacterioneuston and bacterioplankton using culture-dependent and culture-independent methodologies". Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology 101 4 (2012): 819-835. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862651668&partnerID=MN8TOARS.
    10.1007/s10482-012-9697-z
  100. Moura, A.; Pereira, C.; Henriques, I.; Correia, A.. "Novel gene cassettes and integrons in antibiotic-resistant bacteria isolated from urban wastewaters". Research in Microbiology 163 2 (2012): 92-100. http://www.scopus.com/inward/record.url?eid=2-s2.0-84858004667&partnerID=MN8TOARS.
    10.1016/j.resmic.2011.10.010
  101. Oliveira, C.S.; Lázaro, B.; Azevedo, J.S.N.; Henriques, I.; Almeida, A.; Correia, A.. "New molecular variants of epsilon and beta IncP-1 plasmids are present in estuarine waters". Plasmid 67 3 (2012): 252-258. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859896762&partnerID=MN8TOARS.
    10.1016/j.plasmid.2011.11.002
  102. Santos, A.L.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "Effects of ultraviolet radiation on the abundance, diversity and activity of bacterioneuston and bacterioplankton: Insights from microcosm studies". Aquatic Sciences 73 1 (2011): 63-77. http://www.scopus.com/inward/record.url?eid=2-s2.0-79251609461&partnerID=MN8TOARS.
    10.1007/s00027-010-0160-9
  103. Santos, A.L.; Lopes, S.; Baptista, I.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, Â.. "Diversity in UV sensitivity and recovery potential among bacterioneuston and bacterioplankton isolates". Letters in Applied Microbiology 52 4 (2011): 360-366. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952531449&partnerID=MN8TOARS.
    10.1111/j.1472-765X.2011.03011.x
  104. Matos, A.; Borges, M.-T.; Peixe, C.; Henriques, I.; Pereira, C.M.; Castro, P.M.L.. "A molecular and multivariate approach to the microbial community of a commercial shallow raceway marine recirculation system operating with a Moving Bed Biofilter". Aquaculture Research 42 9 (2011): 1308-1322. http://www.scopus.com/inward/record.url?eid=2-s2.0-79961195347&partnerID=MN8TOARS.
    10.1111/j.1365-2109.2010.02719.x
  105. Moura, A.; Henriques, I.; Smalla, K.; Correia, A.. "Wastewater bacterial communities bring together broad-host range plasmids, integrons and a wide diversity of uncharacterized gene cassettes". Research in Microbiology 161 1 (2010): 58-66. http://www.scopus.com/inward/record.url?eid=2-s2.0-74649085158&partnerID=MN8TOARS.
    10.1016/j.resmic.2009.11.004
  106. Calhau, V.; Tacão, M.; Morgado, F.; Correia, A.; Henriques, I.. "PCR-DGGE-based methodologies to assess diversity and dynamics of Aeromonas communities". Journal of Applied Microbiology 108 2 (2010): 611-623. http://www.scopus.com/inward/record.url?eid=2-s2.0-74049101601&partnerID=MN8TOARS.
    10.1111/j.1365-2672.2009.04452.x
  107. Moura, A.; Tacão, M.; Henriques, I.; Dias, J.; Ferreira, P.; Correia, A.. "Characterization of bacterial diversity in two aerated lagoons of a wastewater treatment plant using PCR-DGGE analysis". Microbiological Research 164 5 (2009): 560-569. http://www.scopus.com/inward/record.url?eid=2-s2.0-70249103518&partnerID=MN8TOARS.
    10.1016/j.micres.2007.06.005
  108. Santos, A.L.; Mendes, C.; Gomes, N.C.M.; Henriques, I.; Correia, A.; Almeida, A.; Cunha, A.. "Short-term variability of abundance, diversity and activity of estuarine bacterioneuston and bacterioplankton". Journal of Plankton Research 31 12 (2009): 1545-1555. http://www.scopus.com/inward/record.url?eid=2-s2.0-70449625322&partnerID=MN8TOARS.
    10.1093/plankt/fbp083
  109. Moura, A.; Soares, M.; Pereira, C.; Leitão, N.; Henriques, I.; Correia, A.. "INTEGRALL: A database and search engine for integrons, integrases and gene cassettes". Bioinformatics 25 8 (2009): 1096-1098. http://www.scopus.com/inward/record.url?eid=2-s2.0-64549119505&partnerID=MN8TOARS.
    10.1093/bioinformatics/btp105
  110. Calheiros, C.S.C.; Duque, A.F.; Moura, A.; Henriques, I.S.; Correia, A.; Rangel, A.O.S.S.; Castro, P.M.L.. "Substrate effect on bacterial communities from constructed wetlands planted with Typha latifolia treating industrial wastewater". Ecological Engineering 35 5 (2009): 744-753. http://www.scopus.com/inward/record.url?eid=2-s2.0-63449124954&partnerID=MN8TOARS.
    10.1016/j.ecoleng.2008.11.010
  111. Calheiros, C.S.C.; Duque, A.F.; Moura, A.; Henriques, I.S.; Correia, A.; Rangel, A.O.S.S.; Castro, P.M.L.. "Changes in the bacterial community structure in two-stage constructed wetlands with different plants for industrial wastewater treatment". Bioresource Technology 100 13 (2009): 3228-3235. http://www.scopus.com/inward/record.url?eid=2-s2.0-63449116471&partnerID=MN8TOARS.
    10.1016/j.biortech.2009.02.033
  112. Henriques, I.S.; Fonseca, F.; Alves, A.; Saavedra, M.J.; Correia, A.. "Tetracycline-resistance genes in Gram-negative isolates from estuarine waters". Letters in Applied Microbiology 47 6 (2008): 526-533. http://www.scopus.com/inward/record.url?eid=2-s2.0-56549100091&partnerID=MN8TOARS.
    10.1111/j.1472-765X.2008.02452.x
  113. Albano, H.; Henriques, I.; Correia, A.; Hogg, T.; Teixeira, P.. "Characterization of microbial population of 'Alheira' (a traditional Portuguese fermented sausage) by PCR-DGGE and traditional cultural microbiological methods". Journal of Applied Microbiology 105 6 (2008): 2187-2194. http://www.scopus.com/inward/record.url?eid=2-s2.0-56649094482&partnerID=MN8TOARS.
    10.1111/j.1365-2672.2008.03947.x
  114. De Figueiredo, D.R.; Pereira, M.J.; Moura, A.; Silva, L.; Bárrios, S.; Fonseca, F.; Henriques, I.; Correia, A.. "Bacterial community composition over a dry winter in meso- and eutrophic Portuguese water bodies". FEMS Microbiology Ecology 59 3 (2007): 638-650. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847719968&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2006.00241.x
  115. Moura, A.; Henriques, I.; Ribeiro, R.; Correia, A.. "Prevalence and characterization of integrons from bacteria isolated from a slaughterhouse wastewater treatment plant". Journal of Antimicrobial Chemotherapy 60 6 (2007): 1243-1250. http://www.scopus.com/inward/record.url?eid=2-s2.0-36448968228&partnerID=MN8TOARS.
    10.1093/jac/dkm340
  116. Fonseca, F.; Sarmento, A.C.; Henriques, I.; Samyn, B.; Van Beeumen, J.; Domingues, P.; Domingues, M.R.; Saavedra, M.J.; Correia, A.. "Biochemical characterization of SFC-1, a class A carbapenem-hydrolyzing ß-lactamase". Antimicrobial Agents and Chemotherapy 51 12 (2007): 4512-4514. http://www.scopus.com/inward/record.url?eid=2-s2.0-36749039667&partnerID=MN8TOARS.
    10.1128/AAC.00491-07
  117. Alves, A.; Phillips, A.J.L.; Henriques, I.; Correia, A.. "Rapid differentiation of species of Botryosphaeriaceae by PCR fingerprinting". Research in Microbiology 158 2 (2007): 112-121. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847388553&partnerID=MN8TOARS.
    10.1016/j.resmic.2006.10.003
  118. Henriques, I.; Moura, A.; Alves, A.; Saavedra, M.J.; Correia, A.. "Analysing diversity among ß-lactamase encoding genes in aquatic environments". FEMS Microbiology Ecology 56 3 (2006): 418-429. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646562168&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2006.00073.x
  119. Henriques, I.S.; Alves, A.; Tacão, M.; Almeida, A.; Cunha, A.; Correia, A.. "Seasonal and spatial variability of free-living bacterial community composition along an estuarine gradient (Ria de Aveiro, Portugal)". Estuarine, Coastal and Shelf Science 68 1 (2006): 139-148. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646889784&partnerID=MN8TOARS.
    10.1016/j.ecss.2006.01.015
  120. Carvalho, M.F.; Ferreira Jorge, R.; Pacheco, C.C.; De Marco, P.; Henriques, I.S.; Correia, A.; Castro, P.M.L.. "Long-term performance and microbial dynamics of an up-flow fixed bed reactor established for the biodegradation of fluorobenzene". Applied Microbiology and Biotechnology 71 4 (2006): 555-562. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745936577&partnerID=MN8TOARS.
    10.1007/s00253-005-0175-7
  121. Emanuelsson, M.A.E.; Henriques, I.S.; Ferreira Jorge, R.M.; Castro, P.M.L.. "Biodegradation of 2-fluorobenzoate in upflow fixed bed bioreactors operated with different growth support materials". Journal of Chemical Technology and Biotechnology 81 9 (2006): 1577-1585. http://www.scopus.com/inward/record.url?eid=2-s2.0-33747480950&partnerID=MN8TOARS.
    10.1002/jctb.1565
  122. Henriques, I.S.; Fonseca, F.; Alves, A.; Saavedra, M.J.; Correia, A.. "Occurrence and diversity of integrons and ß-lactamase genes among ampicillin-resistant isolates from estuarine waters". Research in Microbiology 157 10 (2006): 938-947. http://www.scopus.com/inward/record.url?eid=2-s2.0-34548630152&partnerID=MN8TOARS.
    10.1016/j.resmic.2006.09.003
  123. Alves, A.; Phillips, A.J.L.; Henriques, I.; Correia, A.. "Evaluation of amplified ribosomal DNA restriction analysis as a method for the identification of Botryosphaeria species". FEMS Microbiology Letters 245 2 (2005): 221-229. http://www.scopus.com/inward/record.url?eid=2-s2.0-17144428889&partnerID=MN8TOARS.
    10.1016/j.femsle.2005.03.005
  124. Tacão, M.; Moura, A.; Alves, A.; Henriques, I.; Saavedra, M.J.; Correia, A.. "Evaluation of 16S rDNA- and gyrB-DGGE for typing members of the genus Aeromonas". FEMS Microbiology Letters 246 1 (2005): 11-18. http://www.scopus.com/inward/record.url?eid=2-s2.0-18144391544&partnerID=MN8TOARS.
    10.1016/j.femsle.2005.03.033
  125. Henriques, I.; Moura, A.; Alves, A.; Saavedra, M.J.; Correia, A.. "Molecular characterization of a carbapenem-hydrolyzing class A ß-lactamase, SFC-1, from Serratia fonticola UTAD54". Antimicrobial Agents and Chemotherapy 48 6 (2004): 2321-2324. http://www.scopus.com/inward/record.url?eid=2-s2.0-2542499764&partnerID=MN8TOARS.
    10.1128/AAC.48.6.2321-2324.2004
  126. Henriques, I.S.; Almeida, A.; Cunha, A.; Correia, A.. "Molecular sequence analysis of prokaryotic diversity in the middle and outer sections of the Portuguese estuary Ria de Aveiro". FEMS Microbiology Ecology 49 2 (2004): 269-279. http://www.scopus.com/inward/record.url?eid=2-s2.0-3142782432&partnerID=MN8TOARS.
    10.1016/j.femsec.2004.04.003
  127. Alves, A.; Henriques, I.; Fragoeiro, S.; Santos, C.; Phillips, A.J.L.; Correia, A.. "Applicability of rep-PCR genomic fingerprinting to molecular discrimination of members of the genera Phaeoacremonium and Phaeomoniella". Plant Pathology 53 5 (2004): 629-634. http://www.scopus.com/inward/record.url?eid=2-s2.0-7044246166&partnerID=MN8TOARS.
    10.1111/j.1365-3059.2004.01069.x
  128. Saavedra, M.J.; Peixe, L.; Sousa, J.C.; Henriques, I.; Alves, A.; Correia, A.. "Sfh-I, a subclass B2 metallo-ß-lactamase from a Serratia fonticola environmental isolate". Antimicrobial Agents and Chemotherapy 47 7 (2003): 2330-2333. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038311982&partnerID=MN8TOARS.
    10.1128/AAC.47.7.2330-2333.2003
  129. Alves, A.; Santos, O.; Henriques, I.; Correia, A.. "Evaluation of methods for molecular typing and identification of members of the genus Brevibacterium and other related species". FEMS Microbiology Letters 213 2 (2002): 205-211. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037031136&partnerID=MN8TOARS.
    10.1016/S0378-1097(02)00818-2
  130. Mendo, S.A.L.V.; Henriques, I.S.; Correia, A.C.M.; Duarte, J.M.C.. "Genetic characterization of a new thermotolerant Bacillus licheniformis strain". Current Microbiology 40 2 (2000): 137-139. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033982486&partnerID=MN8TOARS.
    10.1007/s002849910028

Intellectual property

Copyright registration
  1. 2013. "Public Web Database INTEGRALL (registered intellectual property n.º 5627/2013) – http://integrall.bio.ua.pt/: database dedicated to integrons and gene cassettes.".
    Registered
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2019 Role of the Environment in the Evolution of Antibiotic Resistance. XV Encontro Nacional de Biologia Evolutiva. 14-15 Novembro, Matosinhos, Portugal - Invited Speaker XV Encontro Nacional de Biologia Evolutiva
(Portugal)
2017 Mobile antibiotic resistome in wastewater and downstream environments. 1st International Congress on Biochemistry and Microbiology Applied Technologies [BMAT-2017], Hammamet, Tunisia - Invited speaker 1st International Congress on Biochemistry and Microbiology Applied Technologies [BMAT-2017]
(Hammamet, Tunisia)
2017 Fate of ESBL-producing Enterobacteriaceae in a full-scale wastewater treatment plant and potential impact of UV disinfection. 2nd International Caparica Conference in Antibiotic Resistance, Lisbon, Portugal - Invited speaker 2nd International Caparica Conference in Antibiotic Resistance
(Lisbon, Portugal)
2015 Transferrable antibiotic resistance in rivers and estuaries. 3rd International symposium on the environmental dimension of antibiotic resistance, Wernigerode, Germany - Invited speaker 3rd International symposium on the environmental dimension of antibiotic resistance
(Wernigerode, Germany)
2013 Bacterial diversity in a complex biological process: the pine wilt disease. First International Conference, “Microbial Diversity: Challenges and Applications”, Hammamet, Tunisia - Invited speaker First International Conference, “Microbial Diversity: Challenges and Applications”
(Hammamet, Tunisia)
2011 Ambientes aquáticos como reservatórios de resistência a antibióticos: implicações para a saúde pública. XI Jornadas de Análises Clínicas e Saúde Pública, Coimbra, Portugal - Invited Speaker XI Jornadas de Análises Clínicas e Saúde Pública
(Portugal)
2011 As carbapenemases de Serratia fonticola: como a genética e a bioquímica podem contribuir para elucidar a resistência a antimicrobianos. XI Jornadas de Análises Clínicas e Saúde Pública, Coimbra, Portugal - Invited Speaker XI Jornadas de Análises Clínicas e Saúde Pública
(Portugal)
2010 Antibiotic resistance genes as emerging environmental contaminants: studies in aquatic environments. Les Journées Internationales de Biotechnologie. Hammamet, Tunisia - Invited speaker Les Journées Internationales de Biotechnologie
(Hammamet, Tunisia)
2009 The environmental antibiotic resistome: new insights from culture-dependent and culture independent approaches. Interdisciplinary symposium Biological responses to chemical contaminants: from molecular to community level. Aveiro, Portugal - Invited speaker Interdisciplinary symposium Biological responses to chemical contaminants: from molecular to community level.
(Aveiro, Portugal)

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2023 - Current Going Places - Unsuspicious Biomes as Sources of Innovative Biomolecules. (2022.12620.BD)
Co-supervisor of Inês Oliveira Costa
PhD in Biosciences (PhD)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2023 - Current Analysis of the resistome of the microbial communities present on macroplastics from the Portuguese coast (2022.10874.BD).
Supervisor of Cátia Filipa Gaspar Verissímo Costa;
PhD in Biosciences (PhD)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2021 - Current Microbiome-based approaches to induce host resistance based on Pine Pitch canker experimental system (ref. 2021.06400.BD)
Supervisor of Frederico Tiago Leitão
PhD in Biosciences (PhD)
Universidade de Coimbra, Portugal
2020 - Current Analysis of microplastics¿ microbiome: role in antibiotic resistance spread (SFRH/BD/144902/2019)
Supervisor of Isabel Silva
PhD in Biosciences (PhD)
Universidade de Coimbra, Portugal
2020 - Current Effect of anthropogenic pollution on bacterial integron’s dynamics in aquatic systems (SFRH/BD/145147/2019).
Supervisor of Rafael Tavares
PhD in Biosciences (PhD)
Universidade de Coimbra, Portugal
2018 - Current Role of metals in antibiotic resistance selection in aquatic systems.
Supervisor of Patrícia Matos
PhD in Biology (PhD)
Universidade de Aveiro, Portugal
2022 - 2023 Microplastics in rivers and their role in the spread of pathogens and antibiotic resistance.
Supervisor of Inês Alçada e Silva
MSc in Biochemistry (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2022 - 2023 Application of filamentous fungi for sustainable resourse utilization in space habitats.
Co-supervisor of Inês Pereira de Figueiredo
MSc in Biochemistry (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2022 - 2023 Involvement of Horizontal Gene Transfer Mechanisms In Antibiotic Resistance Aquisition in Acinetobacter baumanii.
Co-supervisor
MSc in Celular and Molecular Biology (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2017 - 2022 Enterobacteriaceae as mediators for carbapenem resistance transfer between environmental and human settings
Supervisor of Pedro teixeira
PhD in Biology and Ecology of Global Changes (PhD)
Universidade de Aveiro, Portugal
2017 - 2022 Effects of nanomaterials on the bacterial community from agricultural soils: nano-agrochemicals and biosolids’ applications
Supervisor of Sara Peixoto
PhD in Biology and Ecology of Global Changes (PhD)
Universidade de Aveiro, Portugal
2016 - 2022 Novel approaches on the characterization of the wastewater resistome: possible implications on human health and water quality management
Co-supervisor of Jaqueline Rocha
PhD in Biotechnology (PhD)
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2020 - 2021 Antibiotic resistance and virulence associated to Vibrio spp..
Supervisor of Inês Filipa Cavaleiro
MSc in Biochemistry (Master)
Universidade de Coimbra, Portugal
2020 - 2021 Fatores Imunogénicos para avaliação de risco de infeção por SARS-CoV-2
Co-supervisor of Rita Marques
MSc in Biochemistry (Master)
Universidade de Coimbra, Portugal
2016 - 2021 Long term consequences of chemical exposure in zebrafish and potential role of the associated microbiome in the observed toxicity
Supervisor of Ana Rita Almeida
PhD in Biology and Ecology of Global Changes (PhD)
Universidade de Aveiro, Portugal
2014 - 2021 Emergence and dissemination of antibiotic resistance in the environment: origin of resistance genes and role of human activities.
Supervisor of Susana Araújo
PhD in Biology and Ecology of Global Changes (PhD)
Universidade de Aveiro, Portugal
2019 - 2020 Resistance to antibiotics in estuarine bacteria potentially pathogenic of fish and other aquatic animals.
Supervisor of Joana Dias
Master in Biochemistry (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2019 - 2020 Rivers as routes for the spread of antibiotic resistance: Role of Anthropogenic Pressures and Risks to Human Health
Supervisor of José Laço
MSc in Biochemistry (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2019 - 2020 Antibiotic Resistance in Urban Lakes
Co-supervisor of Nuno Pinto
MSc in Microbiology (Master)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2018 - 2019 Study of the anaerobic biodegradability of kraft pulp bleaching effluents.
Co-supervisor of Rita Santos
MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2018 - 2019 Comparative genomic analysis of the Ensifer genus provides insights into the adaptations to cave environments.
Co-supervisor of Bernardo Silva
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2017 - 2019 Development of laser-induced graphene impedimetric biosensors for Escherichia coli detection.
Co-supervisor of Ana Moreira
MSc in Physical Engineering (Master)
Universidade de Aveiro, Portugal
2017 - 2019 Virulence, Survival and Integron-mediated antibiotic resistance in the water compartment: Exploring several aspects that may jeopardize public health
Supervisor of Rafael Tavares
MSc in Microbiology (Master)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2017 - 2019 Microbiome of the rhizosphere of Pinus: impact of Fusarium infection and phosphite amendement
Supervisor of Frederico Leitão
MSc in Microbiology (Master)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2017 - 2018 Role of non-antibiotic contaminants in antibiotic resistance selection in aquatic systems.
Supervisor of Isabel Alexandre Teixeira da Silva
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2017 - 2018 Bioinoculantes e biochar na promoção do crescimento de plantas em solos de minas.
Co-supervisor of Mariana Godinho
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2017 - 2018 Are wastewaters discharges shaping the environmental antibiotic resistome - a metagenomic analysis of bacterial communities from riverine ecosystems
Supervisor of Marta Tacão
Post Doc (Other)
Universidade de Aveiro, Portugal
2014 - 2018 Studying the role of bacterial communities on Pine Wilt Disease development
Supervisor of Marta Salgueiro Alves
PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2014 - 2018 Meta-analysis in aerobic granular sludge bioreactors for wastewater treatment
Supervisor of Catarina Amorim
Post Doc
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2016 - 2017 Microbial community in houses from patients with chronic respiratory diseases in Estarreja.
Supervisor of Tatiana Silva
MSC in Molecular and Cellular Biology (Master)
Universidade de Aveiro, Portugal
2016 - 2017 Molecular characterization of multi-drug resistant clinical isolates.
Supervisor of Diana Salvador
MSc in Molecular and Cellular Biology (Master)
Universidade de Aveiro, Portugal
2013 - 2017 Endophytic bacterial communities of salt marsh plants from Hg-contaminated sites
Co-supervisor of Cátia Isabel Assis Fidalgo
PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2015 - 2016 Genome wide analysis of antibiotic and metal resistance in Pseudomonas.
Supervisor of Pedro Teixeira
MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2015 - 2016 The microbiome of Pinus pinaster.
Co-supervisor of Helena Lopes
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2015 - 2015 Genomic and lipidomic characterization of multidrug resistant bacteria found in pressure ulcers and diabetic foot infections
Supervisor of Cláudia Simões
Post Doc
Universidade de Aveiro, Portugal
2014 - 2015 Bacterial communities and antibiotic resistance genes in hospital effluents and municipal wastewaters of Aveiro
Co-supervisor of Ana Coito
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2014 - 2015 Sources of Antibiotic Resistance in the Environment.
Supervisor of Maria Vendas
MSc in Molecular and Cellular Biology (Master)
Universidade de Aveiro, Portugal
2009 - 2015 The resistome of Aeromonas salmonicida unraveled by proteomics
Co-supervisor of Nádia Osório
PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2008 - 2014 Resistance to last-resort antibiotics in natural environments
Co-supervisor of Marta Cristina Martins Oliveira Tacão
PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2012 - 2013 Antibiotic Resistance in Escherichia coli isolates from different sources.
Supervisor of Marta Salgueiro Alves
MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2012 - 2012 Identification of faecal pollution sources in the Berlenga Island
Supervisor of Susana Araújo
MSc in Applied Biology (Master)
Universidade de Aveiro, Portugal
2011 - 2012 Phenotypical tests to detect antibiotic resistance genes.
Co-supervisor of Ana Rodrigues
MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2011 - 2012 The soil microbiome: influence of the phytosanitary condition of the cork oak.
Co-supervisor of Diogo Pinho
MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2007 - 2012 Phylogenetic and functional diversity of estuarine bacterioneuston along a salinity gradient
Co-supervisor of Juliana Nina Azevedo
PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2010 - 2011 Mercury effect on plant-associated microbial communities.
Co-supervisor of Edna Almeida
MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2009 - 2010 ESBL in Enterobacteriaceae at the hospital Póvoa de Varzim/Vila do Conde, Portugal.
Supervisor of Cristina Sá
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2008 - 2009 Study on serological markers of the hepatitis B virus on a blood donors population.
Co-supervisor of Cristina Carvalho
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2008 - 2009 Epidemiological study on Chagas disease prevalence in blood donors.
Co-supervisor of Sandra Neto
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2008 - 2009 Prevalence of urinary infections and susceptibility to antibiotics of uropathogens.
Co-supervisor of Carlos Correia
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2008 - 2009 The culturable bacterial community of the sea surface microlayer.
Supervisor of Isabel Ramos
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2007 - 2008 Development and validation of culture-independent methodologies to assess diversity and dynamics of Aeromonas communities.
Supervisor of Vera Calhau
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2007 - 2008 Cloning and expression of a putative collagenase of Aeromonas hydrophila.
Co-supervisor of Eliana Cavaleiro
MSc in Microbiology (Master)
Universidade de Aveiro, Portugal

Event organisation

Event name
Type of event (Role)
Institution / Organization
2018/07/23 - 2018/07/27 Advanced Course - Microbial Diversity: Methods and Applications (2018/07/23 - 2018/07/27)
Other
Universidade de Aveiro, Portugal
2018/07/09 - 2018/07/13 Advanced Course - Bioinformatics for Microbiologists (2018/07/09 - 2018/07/13)
Other
Universidade de Aveiro, Portugal
2016/04/15 - 2016/04/15 Workshop - Antibiotic resistance: emergent contaminant Porto, Portugal. (2016/04/15 - 2016/04/15)
Workshop
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2013/07/15 - 2013/07/19 Advanced Course - Microbial Diversity: Methods and Applications. (2013/07/15 - 2013/07/19) Universidade de Aveiro, Portugal
2012/06/18 - 2012/06/22 Advanced Course - Antibiotic resistance in the environment. (2012/06/18 - 2012/06/22) Universidade de Aveiro, Portugal
2008/01/21 - 2008/01/26 Chair of the Organizing Committee of the international scientific meeting “Molecular Methods to Study Complex Microbial Communities – 1st MCoMiC” , Aveiro, Portugal. (2008/01/21 - 2008/01/26) Universidade de Aveiro, Portugal
2005/01/24 - 2005/01/28 Chair of the Organizing Committee of the workshop “DGGE in Microbiology - Principles and Practice” Aveiro, Portugal. (2005/01/24 - 2005/01/28) Universidade de Aveiro, Portugal

Jury of academic degree

Topic
Role
Candidate name (Type of degree)
Institution / Organization
2023 Biochemical and structural studies of a novel glucosamine kinase and a unique glycosyltransferase: new antimicrobial opportunities in actinobacterial glycobiology.
(Thesis) Arguer
Daniela Cristina Nunes Costa (PhD)
Universidade de Coimbra, Portugal
2023 Metagenomic assessment of trophic networks for a sustainable conservation of Cabo Verde seabirds.
(Thesis) Arguer
Ana Rita Tomé Carreiro (PhD)
Universidade de Coimbra, Portugal
2023 Decrypting the Diversity of Microbiome in Aquaculture
(Thesis) Main arguer
Vanessa Salgueiro (PhD)
Universidade Nova de Lisboa Unidade de Ensino e Investigação em Saúde Pública Global, Portugal
2023 Environmental integrons, new insights from natural microbial communities.
(Thesis) Main arguer
Eva Sandoval Quintana (PhD)
Université de Pau et des Pays de l¿Adour Collège STEE Sciences et Technologies pour l¿Energie et l¿Environnement, France
2023 Unraveling the contribution of environmental stressors to the selection of multidrug-resistant bacteria: focus on the poultry production chain.
(Thesis) Main arguer
Andreia Carina Martins Rebelo Gonçalves (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2023 Exploring the Microbial Diversity of Portuguese Saltern Environments
(Thesis) Main arguer
Andreia Carina Martins Rebelo Gonçalves (PhD)
Universidade do Porto, Portugal
2022 Effects of nanomaterials on the bacterial community from agricultural soils: nano-agrochemicals and biosolids’ applications.
Supervisor
Sara Peixoto (PhD)
Universidade de Aveiro, Portugal
2022 Enterobacteriaceae as mediators for carbapenem resistance transfer between environmental and human settings.
Supervisor
Pedro Filipe Teixeira (PhD)
Universidade de Aveiro, Portugal
2022 Doutoramento em Ciencias Mariñas, Tecnoloxía e Xestión Effect of increasing nutrient inputs on the taxonomic composition of prokaryote plankton from the Ría de Vigo and the adjacent shelf.
(Thesis) Main arguer
Alberto Gutiérrez Barral; (PhD)
Universidade de Vigo, Spain
2022 Ocorrência de bacilos gram-negativos produtores de betalactamases de espectro estendido nas águas da baía de Guanabara, RJ, Brasil, ao longo de 12 meses.
(Thesis) Main arguer
Wellington Felipe da Costa (PhD)
2022 Algae and cyanobacteria biodeterioration within the UNESCO World Heritage site ‘University of Coimbra – Alta and Sofia’: Assessment of natural biocides as novel control strategies.
(Thesis) Arguer
Fabiana Vanessa Almeida Soares (PhD)
Universidade de Coimbra, Portugal
2021 Long term consequences of chemical exposure in zebrafish and potential role of the associated microbiome in the observed toxicity.
Supervisor
Ana Rita Almeida (PhD)
Universidade de Aveiro, Portugal
2021 Classification and identification of thermophilic organisms isolated from São Pedro do Sul hot spring and revision of the classification of genus meiothermus: integration of genomics into prokaryotic taxonomy.
(Thesis) Arguer
Luciana Costa de Albuquerque Pinto (PhD)
Universidade de Coimbra, Portugal
2021 Optimizing the scale up biochemical platform biorefinery for lactic acid production from lignocellulosic biomass.
(Thesis) Arguer
Ana Rita Pontes Pereira (PhD)
Universidade de Coimbra, Portugal
2021 The role of fungi on monumental stone biodeterioration within the UNESCO World Heritage site "University of Coimbra - Alta and Sofia"
(Thesis) Arguer
João Trovão Lima Simões Antunes (PhD)
Universidade de Coimbra, Portugal
2021 Emergence and dissemination of antibiotic resistance in the environment: origin of resistance genes and role of human activities.
Supervisor
Susana Manso Araújo (PhD)
Universidade de Aveiro, Portugal
2020 ongINg_nano: long term and multIgeNerational effects of nanomaterials in terrestrial invertebrates
(Thesis) Arguer
Rita Carina Saraiva Silva Bicho (PhD)
Universidade de Aveiro Departamento de Biologia, Portugal
2020 An investigation of the presence of antibiotic resistance determinants and resistant bacteria in the Norwegian environment by examination of sludge from water treatment plants.
(Thesis) Main arguer
Ingvild Falkum Ullmann; (PhD)
OsloMet - storbyuniversitetet, Norway
2019 Fluoroquinolone antibiotics in the environment: biodegradation stdies and presence in several environmental matrices
(Thesis) Main arguer
Alexandra Maia (PhD)
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2019 Carbapenemase producers of Pseudomonas aeruginosa: lights on new mobile genetic elements.
(Thesis) Main arguer
João Francisco Botelho (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2018 Studying the role of bacterial communities on Pine Wilt Disease development
Supervisor
Marta Salgueiro Alves (PhD)
Universidade de Aveiro, Portugal
2016 Extending the knowledge on drivers of intrinsic and aquired resistance to cephalosporinsand quinolones in Enterobacteriaceae
(Thesis) Main arguer
Teresa Ribeiro (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 Assessing antibiotic resistance in Gram negative bacteria from animals and the wider environment.
(Thesis) Main arguer
Daniela Jones Dias (PhD)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2016 The role of uncommon bacteria in catheter-associated urinary tract infections
(Thesis) Main arguer
Andreia Mateus Azevedo (PhD)
Universidade do Porto Faculdade de Engenharia, Portugal
2016 Contribution of biocides to the selection of Salmonella non-typhoid resistant to antibiotics: a multilayerd approach.
(Thesis) Main arguer
Joana Mourão (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 Tracking antibiotic Resistance from hospital effluents to the surrounding environment.
(Thesis) Main arguer
Ana Rita varela (PhD)
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2014 Tolerância a biocidas e dispersão de resistência a antibióticos: uma abordagem fenotípica e molecular em Enterococcus spp. De diferentes origens.
(Thesis) Main arguer
Maria Eduarda Silveira (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2014 Brazilian savanna forest: conservation, medicinal reservoir and bioprospecting.
(Thesis) Main arguer
Nelita Gonçalves de Bessa (PhD)
Universidade de Aveiro, Portugal
2012 Resistência ao tributilestanho (TBT) em Aeromonas molluscorum Av27
(Thesis) Main arguer
Andreia Henriques Cruz (PhD)
Universidade de Aveiro, Portugal
2012 Salubridade microbiológica dos bivalves - relevância na segurança alimentar
(Thesis) Arguer
Jacinta Oliveira (PhD)
Universidade de Aveiro, Portugal
2012 Phylogenetic and functional diversity of estuarine bacterioneuston along a salinity gradient
Supervisor
Juliana Nina Azevedo (PhD)
Universidade de Aveiro, Portugal
2011 Molecular diversity and transferability of integrons from wastewaters.
(Thesis) Arguer
Alexandra Moura (PhD)
Universidade de Aveiro, Portugal
2010 ISCR and their association with antibiotic resistance genes
(Thesis) Main arguer
Sónia Ferreira (PhD)
Universidade de Aveiro, Portugal

Committee member

Activity description
Role
Institution / Organization
2021 - Current Member of the Scientific Committee of the 17th Annual Meeting of the Portuguese Association for Evolutionary Biology (XVII ENBE), 16th-17th December 2021, Online. (https://enbe2021.rd.ciencias.ulisboa.pt/about-us)
Member
Universidade de Lisboa, Portugal
2018/10/10 - 2018/10/12 Member of the Scientific Committee of the XENOWAC II Conference, held in Limassol, Cyprus (http://www.xenowac2018.com/)
Member
University of Cyprus, Cyprus
2015 - 2018 Coordinator of the Biology Department Scientific Comittee for the implementation of “Centro de Ciência Viva de Vouzela” in cooperation with Câmara Municipal de Vouzela and Fábrica Ciência Viva
Coordinator
Universidade de Aveiro, Portugal
2014 - 2018 Member substitute of the Management Committee of the COST action ES1403 “NEREUS-new and emerging challenges and opportunities in wastewater reuse”. http://www.cost.eu/domains_actions/essem/Actions/ ES1403?parties
Member
European Union, Belgium
2017/11 - 2017/11 Member of the Scientific Committee of the 1st International Congress on Biochemistry and Microbiology Applied Technologies [BMAT-2017], Hammamet, Tunisia. Euro-African Association of Environnement (AEAE), Tunisia
2012 - 2013 Member of the COST action TD0803 “DARE–Detecting Antibiotic Resistance in Europe”. http://www.cost-dare.eu/
Member
European Union, Belgium

Evaluation committee

Activity description
Role
Institution / Organization Funding entity
2023 - Current Internal Expert Reviewer of the Research Foundation – Flanders (FWO; https://www.fwo.be/en/); panel MED3PROJECTS - Immunology and Microbiology;
Evaluator
Research Foundation – Flanders (FWO), Belgium Research Foundation – Flanders (FWO)
2023 - 2023 Reviewer of research proposals for the European Science Foundation - A*MIDEX International Research and Training (Structuring of international research-training projects; https://www.univ-amu.fr). European Science Foundation, France European Science Foundation
2022 - 2022 Reviewer of research proposals for the National Science Centre (Poland; https://www.ncn.gov.pl/en) under the Call OPUS2022. Narodowe Centrum Nauki, Poland Narodowe Centrum Nauki
2022 - 2022 Reviewer of research proposals for the Rovaltain Foundation (Valence, França; https://fcsrovaltain.org/), under the programme Environmental Toxicology and Ecotoxicology Rovaltain Foundation, France Rovaltain Foundation
2021 - 2021 Reviewer of research proposals for The Research Foundation – Flanders (FWO; https://www.fwo.be/en/); FWO Call for Fundamental Research Projects 2021 Research Foundation – Flanders (FWO), Belgium Research Foundation – Flanders (FWO)
2020 - 2020 Reviewer of research proposals for the Deutsche Forschungsgemeinschaft (German Research Foundation; www.dfg.de/en/index.jsp). Deutsche Forschungsgemeinschaft, Germany Deutsche Forschungsgemeinschaft
2018 - 2018 Reviewer of research grant applications for the Biotechnology and Biological Sciences Research Council (BBSRC) of the UK (www.nerc.ac.uk) in the 2018 call. Biotechnology and Biological Sciences Research Council, United Kingdom Biotechnology and Biological Sciences Research Council
2017 - 2017 Reviewer of research grant applications for the Welcome Trust/DBT India Alliance (http://www.wellcomedbt.org/). Wellcome Trust DBT India Alliance, India Wellcome Trust DBT India Alliance
2016 - 2016 Reviewer of research proposals within the Bilateral Cooperation (Programme for Cooperation in Science between Portugal and Poland) - FCT (Fundação para a Ciência e a Tecnologia). Fundação para a Ciência e a Tecnologia, Portugal Fundação para a Ciência e a Tecnologia
2016 - 2016 Reviewer of research grant applications for the Natural Environment Research Council of the UK (www.nerc.ac.uk) in the call titled ‘Antimicrobial Resistance in the Real World’. Natural Environment Research Council, United Kingdom Natural Environment Research Council
2015 - 2015 Reviewer of research proposals within the programme “Luso-German Integrated Actions” organized by CRUP (Conselho de Reitores das Universidades Portuguesas). Conselho de Reitores das Universidades Portuguesas, Portugal Conselho de Reitores das Universidades Portuguesas
2015 - 2015 Reviewer of research proposals within the programme “Luso-French Integrated Actions” organized by CRUP (Conselho de Reitores das Universidades Portuguesas). Conselho de Reitores das Universidades Portuguesas, Portugal Conselho de Reitores das Universidades Portuguesas
2014 - 2014 Reviewer of research grant applications for the European Society of Clinical Microbiology and Infectious Diseases (https://www.escmid.org/profession_career/ awards_grants/ research _ grants /reviewers/). European Society of Clinical Microbiology and Infectious Diseases, Switzerland European Society of Clinical Microbiology and Infectious Diseases

Journal scientific committee

Journal title (ISSN) Publisher
2023 - Current Antibiotics MDPI
2021 - Current Frontiers in Microbiology (1664-302X) Frontiers Media SA
2020 - Current Genes MDPI
2016 - Current BMC Genomics (1471-2164) Springer (Biomed Central Ltd.)
Distinctions

Other distinction

2012 Scholarship "Special Visiting Researcher"
2008 IUMS meeting attendance grant