???global.info.a_carregar???
Isabel Henriques is an Associate Professor at the University of Coimbra (UC). She graduated in Biology (1997), earned an MSc in Molecular Microbiology (2001) and completed her PhD in Biology in 2006 at the University of Aveiro (UA). As a microbiologist, she explores the intersection between environment and health, applying One Health principles, with a special focus on antimicrobial resistance ecology. She co-coordinates the Research Group One Health at Centre for Functional Ecology (CFE) - Science for People & the Planet and leads the MicroResist Lab, with 5 PhD students and 2 MSc students; previously she trained 3 post-docs, 11 PhD and 31 MSc students. Published more than 130 WoS papers, among other outputs. Coordinated 6 research projects, contributing to several others. Served on scientific committees, Editorial Boards (e.g., Frontiers in Microbiology, BMC Genomics, and Antibiotics) and evaluating panels of grant proposals. Participated in 27 PhD juries in 9 universities across 5 countries. She taught and developed many Microbiology courses, directed the MSc in Microbiology at UA (2017-2018), and currently directs the PhD in Biosciences (DCV-UC; since 2019). She was member of the Scientific Council of UA (2018) and is a member of the Scientific Committee of DCV (since 2019).
Read full resume ↓
Identification

Personal identification

Full name
Isabel Henriques
Gender
Female

Citation names

  • Henriques, Isabel
  • Henriques, I
  • Henriques, I S

Author identifiers

Ciência ID
F516-BFA6-1588
ORCID iD
0000-0001-7717-4939
Researcher Id
B-1667-2008

Email addresses

  • isabel.henriques@uc.pt (Professional)

Telephones

Telephone
  • 239240795 (Professional)

Addresses

  • Universidade de Coimbra. Dept. de Ciências da Vida, Calçada Martim de Freitas, 3000-456 , Coimbra, Coimbra, Portugal (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Microbiology

Languages

Language Speaking Reading Writing Listening Peer-review
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Intermediate (B1) Intermediate (B1) Beginner (A1) Intermediate (B1)
Portuguese (Mother tongue)
Spanish; Castilian Intermediate (B1) Intermediate (B1) Beginner (A1) Intermediate (B1)
Education
Degree Classification
2006
Concluded
 Biology (Doutoramento)
Universidade de Aveiro, Portugal
2001
Concluded
 Molecular Microbiology (Mestrado)
Universidade de Aveiro, Portugal
1992 - 1997
Concluded
 Biology (Licenciatura)
Universidade de Aveiro, Portugal
Affiliation

Science

Category
Host institution 		Employer
2013 - 2018 Researcher (Research) Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2012 - 2015 Visiting Researcher (Research) Universidade Federal do Pará, Brazil
2006 - 2013 Postdoc (Research) Universidade de Aveiro, Portugal

Teaching in Higher Education

Category
Host institution 		Employer
2022/12 - Current Associate Professor (University Teacher) Universidade de Coimbra, Portugal
2018 - 2022/12 Assistant Professor (University Teacher) Universidade de Coimbra, Portugal
2007 - 2013 Invited Assistant Professor (University Teacher) Universidade de Aveiro, Portugal

Positions / Appointments

Category
Host institution 		Employer
2023 - Current Coordinator of the Research Group One Health Universidade de Coimbra Centre for Functional Ecology - Science for People & the Planet, Portugal
2021/11 - Current Member of the Scientific Committee of the Department of Life Sciences Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2019 - Current Coordinator of the PhD in Biosciences Universidade de Coimbra, Portugal
2016 - 2020 Coordinator of the Microbial and Cellular Biology Laboratory Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2017 - 2018 Member of the Scientific Council of the University of Aveiro Universidade de Aveiro, Portugal
2017 - 2018 Coordinator of the Master's Degree in Microbiology Universidade de Aveiro, Portugal
2017 - 2018 Coordinator of the Environmental Biology and Health Research Line Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal

Others

Category
Host institution 		Employer
1997 - 1998 High School Teacher Ministério da Educação, Portugal
Projects

Contract

Designation Funders
2024 - 2024 Exploiting the power of Portuguese macroalgae and halophytes: A promising approach to tackle antibiotic resistance.
FAM FOUNDATION
Researcher
Universidade de Coimbra Centre for Functional Ecology - Science for People & the Planet, Portugal
Ongoing
2022 - 2024 MICRANT: Microplastics in Estarreja rivers and their role in the spread of pathogens and antibiotic resistance
MICRANT
Principal investigator
Labex DRIIHM
Ongoing
2018 - 2021 GREAT: Granular microalgae- bacterial sludge for aquaculture wastewater treatment.
POCI-01-0145-FEDER-029970
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2018 - 2021 Resilience of anthozoan corals to deep-sea mining, a holobiont approach
PTDC/BIA-BMA/29861/2017
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2018 - 2021 ZnO nanostructures and ZnO/nanocarbon composites for biosensor applications
PTDC/NAN-MAT/28755/2017
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2018 - 2021 METOXCLIM: Metal contamination in a global warming perspective: effects on soil properties and relation with toxicity changes
POCI-01-0145-FEDER-029557
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2016 - 2019 GENetic and clinIcAL markers in COPD trajectory
Provided by PTCRIS: 140910
Researcher
Fundação para a Ciência e a Tecnologia
2014 - 2019 Antibiotic resistance in aquatic systems: quantify risks and outline solutions
grant.Provided by PTCRIS: 147551
Principal investigator
Fundação para a Ciência e a Tecnologia
2017 - 2018 ARTEMan: Antibiotic resistance transferability between environmental and human settings
4.4.1.00 CAPES
Principal investigator
Fundação para a Ciência e a Tecnologia
Concluded
2014 - 2017 Stopping Antibiotic Resistance Evolution
Provided by PTCRIS: 138543
Principal investigator
Universidade de Aveiro, Portugal
 Fundação para a Ciência e a Tecnologia
2014 - 2015 REFRESH: Minimizing microbial hazards in vegetables cultivated in the Estarreja municipality.
REFRESH
Principal investigator
Labex DRIIHM
Concluded
2013 - 2015 Spatial and temporal analysis of microbial community in Pine Wilt Disease
Provided by PTCRIS: 130287
130287
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2012 - 2015 PhytoMarsh - The phytosphere of salt-marsh plants: an underexplored microbial hot-spot
118873
Provided by PTCRIS: 118873
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2013 - 2014 ARISKA: Antibiotic Resistance in the Antuã River: assessing risks to public health.
ARISKA
Principal investigator
Labex DRIIHM
Concluded
2010 - 2013 TBTRESENSE - TBT bioremediation and development of biosensor for in situ detection of tributyltin (TBT) in the environment
Provided by PTCRIS: 108024
108024
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2010 - 2013 SEAGULL - Identification of nonpoint sources of faecal pollution in a natural environment: contributing data for risk assessment.
Provided by PTCRIS: 109155
109155
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2010 - 2013 FUBIA: Soil Function-Biodiversity relationship And regional variation
Provided by PTCRIS: 103719
103719
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2008 - 2012 The role of salt marsh plants on mercury cycle: identifying plant-bacteria-Hg interactions critical for ecosystem remediation (MARMER)
Provided by PTCRIS: 67752
67752
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2005 - 2008 Constructed wetlands for industrial wastewater treatment
60126
Provided by PTCRIS: 60126
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2005 - 2007 Isolation and characterization of tributyltin (TBT) resistance genes in marine bacteria
56475
Provided by PTCRIS: 56475
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Outputs

Publications

Book chapter
  1. Henriques, I; Freitas, Helena; Costa, Joana. "Uma Só Saúde e Saúde Planetária: perspetivas convergentes para a sustentabilidade dos sistemas alimentares.". In “ONE HEALTH”: Um Planeta, Uma Saúde, Uma Ética., 61-76. Portugal: Conselho Nacional de Ética para as Ciências da Vida, 2023.
    Published
  2. Pinheiro, Juliana C.; dos Santos, Lays T.; Henriques, Isabel; Silva, Artur; Baraúna, Rafael A.. "Linking the Environmental Microbial Diversity and Antibiotic Resistance". In Microbial Diversity in the Genomic Era, 451-457. Elsevier, 2019.
    10.1016/b978-0-12-814849-5.00025-3
  3. Correia, A.C.M.; Henriques, Isabel; Tacão, Marta; Artur Alves. "Introduction to genetic typing of microorganisms". In Temáticas e Métodos Avançados para o Ensino e Investigação em Biologia, 16-42. Portugal: Afrontamento, 2016.
    Published
  4. Henriques, I.S.; Alves, A.; Saavedra, M.J.; Montforts, M.H.M.M.; Correia, A.. "Environmental Antibiotic Resistome: New Insights from Culture-Independent Approaches". In Microbial Diversity in the Genomic Era. 2011.
    10.1002/9781118156247.ch8
  5. Cruz, Andreia; Henriques, Isabel; Correia, A.C.M.; Suzuki, S.; Mendo, S.. "Aeromonas molluscorum Av27: a potential natural tool for TBT decontamination.". In Interdisciplinary Studies on Environmental Chemistry Vol. 3— Biological Responses to Contaminants: From Molecular to Community Level., 37-46. Terrapub, Tokyo, 2010.
    Published
  6. Ana Luísa Santos; Inês Batista; Vanessa Oliveira; Henriques, Isabel; Newton G; Adelaide Almeida; Correia, A.C.M.; Ângela Cunha. "Oxidative stress induced by photochemical reactions occurring at the surface microlayer.". In Microorganisms in Industry and Environment: From Scientific and Industrial Research to Consumer Products., 978-981. Singapura: World Scientific Publishing. Singapore., 2010.
    Published
Journal article
  1. Alves, Marta; Henriques, Isabel; Castro, Paula M.L.; Amorim, Catarina L.. "Adaptative biological response of aerobic granular sludge to events of single or combined wastewater related stressors". Process Safety and Environmental Protection 194 (2025): 1303-1314. https://doi.org/10.1016/j.psep.2024.12.080.
    10.1016/j.psep.2024.12.080
  2. Tavares, Rafael D.S.; Tacão, Marta; Henriques, Isabel. "Integrons are key players in the spread of beta-lactamase-encoding genes". International Journal of Antimicrobial Agents (2025): 107421. https://doi.org/10.1016/j.ijantimicag.2024.107421.
    10.1016/j.ijantimicag.2024.107421
  3. Leitão, Frederico; Pinto, Glória; Henriques, Isabel. "Pinus radiata seedlings rhizobiome shifts in response to foliar and root phosphite application". European Journal of Soil Biology 123 (2024): 103688. https://doi.org/10.1016/j.ejsobi.2024.103688.
    10.1016/j.ejsobi.2024.103688
  4. Silva, I; Rodrigues, ET; Tacão, M; Henriques, I. "Plastisphere in a low-pollution mountain river: Influence of microplastics on survival of pathogenic bacteria". Chemosphere 368 (2024): 143800. http://dx.doi.org/10.1016/j.chemosphere.2024.143800.
    10.1016/j.chemosphere.2024.143800
  5. Tavares, Rafael D.S.; Fidalgo, Cátia; Rodrigues, Elsa T.; Tacão, Marta; Henriques, Isabel. "Integron-associated genes are reliable indicators of antibiotic resistance in wastewater despite treatment- and seasonality-driven fluctuations". Water Research (2024): 121784. http://dx.doi.org/10.1016/j.watres.2024.121784.
    10.1016/j.watres.2024.121784
  6. Peixoto, Sara; Morgado, Rui G.; Prodana, Marija; Cardoso, Diogo N.; Malheiro, Catarina; Neves, Joana; Santos, Cátia; et al. "Responses of soil microbiome to copper-based materials (nano and bulk) for agricultural applications: An indoor-mesocosm experiment". NanoImpact 34 (2024): 100506. http://dx.doi.org/10.1016/j.impact.2024.100506.
    10.1016/j.impact.2024.100506
  7. Silva, Isabel; Tacão, Marta; Henriques, Isabel. "Hidden threats in the plastisphere: Carbapenemase-producing Enterobacterales colonizing microplastics in river water". Science of The Total Environment (2024): 171268. http://dx.doi.org/10.1016/j.scitotenv.2024.171268.
    10.1016/j.scitotenv.2024.171268
  8. Isabel Silva; Marta Alves; Catarina Malheiro; Ana Rita R. Silva; Susana Loureiro; Isabel Henriques; M. Nazaret González-Alcaraz. "Structural and Functional Shifts in the Microbial Community of a Heavy Metal-Contaminated Soil Exposed to Short-Term Changes in Air Temperature, Soil Moisture and UV Radiation". Genes (2024): https://doi.org/10.3390/genes15010107.
    10.3390/genes15010107
  9. Isabel Silva; Elsa T. Rodrigues; Marta Tacão; Isabel Henriques. "Microplastics accumulate priority antibiotic-resistant pathogens: Evidence from the riverine plastisphere". Environmental Pollution (2023): https://doi.org/10.1016/j.envpol.2023.121995.
    10.1016/j.envpol.2023.121995
  10. Oliveira, Ana S.; Alves, Marta; Leitão, Frederico; Tacão, Marta; Henriques, Isabel; Castro, Paula M.L.; Amorim, Catarina L.. "Bioremediation of coastal aquaculture effluents spiked with florfenicol using microalgae-based granular sludge – a promising solution for recirculating aquaculture systems". Water Research 233 (2023): 119733. http://dx.doi.org/10.1016/j.watres.2023.119733.
    10.1016/j.watres.2023.119733
  11. Rafael D. S. Tavares; Marta Tacão; Elmano Ramalheira; Sónia Ferreira; Isabel Henriques. "Report and Comparative Genomics of an NDM-5-Producing Escherichia coli in a Portuguese Hospital: Complex Class 1 Integrons as Important Players in blaNDM Spread". Microorganisms (2022): https://doi.org/10.3390/microorganisms10112243.
    10.3390/microorganisms10112243
  12. Marta Tacão; José Laço; Pedro Teixeira; Isabel Henriques. "CTX-M-Producing Bacteria Isolated from a Highly Polluted River System in Portugal". International Journal of Environmental Research and Public Health (2022): https://doi.org/10.3390/ijerph191911858.
    10.3390/ijerph191911858
  13. Frederico Leitão; Glória Pinto; Joana Amaral; Pedro Monteiro; Isabel Henriques. "New insights into the role of constitutive bacterial rhizobiome and phenolic compounds in two Pinus spp. with contrasting susceptibility to pine pitch canker". Tree Physiology (2022): https://doi.org/10.1093/treephys/tpab119.
    10.1093/treephys/tpab119
  14. Rocha, Jaqueline; Henriques, Isabel; Gomila, Margarita; Manaia, Célia M.. "Common and distinctive genomic features of Klebsiella pneumoniae thriving in the natural environment or in clinical settings". Scientific Reports 12 1 (2022): http://dx.doi.org/10.1038/s41598-022-14547-6.
    10.1038/s41598-022-14547-6
  15. Teixeira, Pedro; Pinto, Nuno; Henriques, Isabel; Tacão, Marta. "KPC-3-, GES-5-, and VIM-1-Producing Enterobacterales Isolated from Urban Ponds". International Journal of Environmental Research and Public Health 19 10 (2022): 5848. http://dx.doi.org/10.3390/ijerph19105848.
    10.3390/ijerph19105848
  16. Silva, Isabel; Alves, Marta; Malheiro, Catarina; Silva, Ana Rita R.; Loureiro, Susana; Henriques, Isabel; González-Alcaraz, M. Nazaret. "Short-Term Responses of Soil Microbial Communities to Changes in Air Temperature, Soil Moisture and UV Radiation". Genes 13 5 (2022): 850. http://dx.doi.org/10.3390/genes13050850.
    10.3390/genes13050850
  17. Pedro Teixeira; Marta Tacão; Isabel Henriques. "Occurrence and distribution of Carbapenem-resistant Enterobacterales and carbapenemase genes along a highly polluted hydrographic basin". Environmental Pollution 300 (2022): 118958-118958. https://doi.org/10.1016/j.envpol.2022.118958.
    10.1016/j.envpol.2022.118958
  18. Rodrigues, Luís; Coelho, Elisabete; Madeira, Renata; Teixeira, Pedro; Henriques, Isabel; Coimbra, Manuel A.. "Food Ingredients Derived from Lemongrass Byproduct Hydrodistillation: Essential Oil, Hydrolate, and Decoction". Molecules 27 8 (2022): 2493. http://dx.doi.org/10.3390/molecules27082493.
    10.3390/molecules27082493
  19. Quintanilla, Elena; Rodrigues, Clara F.; Henriques, Isabel; Hilário, Ana. "Microbial Associations of Abyssal Gorgonians and Anemones (>4,000 m Depth) at the Clarion-Clipperton Fracture Zone". Frontiers in Microbiology 13 (2022): http://dx.doi.org/10.3389/fmicb.2022.828469.
    10.3389/fmicb.2022.828469
  20. Rocha, Jaqueline; Ferreira, Catarina; Mil-Homens, Dalila; Busquets, Antonio; Fialho, Arsénio M.; Henriques, Isabel; Gomila, Margarita; Manaia, Célia M.. "Third generation cephalosporin-resistant Klebsiella pneumoniae thriving in patients and in wastewater: what do they have in common?". BMC Genomics 23 1 (2022): http://dx.doi.org/10.1186/s12864-021-08279-6.
    10.1186/s12864-021-08279-6
  21. Peixoto, Sara; Loureiro, Susana; Henriques, Isabel. "The impact of silver sulfide nanoparticles and silver ions in soil microbiome". Journal of Hazardous Materials 422 (2022): 126793. http://dx.doi.org/10.1016/j.jhazmat.2021.126793.
    10.1016/j.jhazmat.2021.126793
  22. Peixoto, Sara; Oliveira, Jacinta M.M.; Henriques, Isabel; Morgado, Rui G.; Soares, Amadeu M.V.M.; Loureiro, Susana. "Pollution- induced community tolerance framework - disc diffusion method to assess the impact of silver nanoparticles in soils: Potential relevance for risk assessment". Applied Soil Ecology 169 (2022): 104185. http://dx.doi.org/10.1016/j.apsoil.2021.104185.
    10.1016/j.apsoil.2021.104185
  23. Jacinta M. M. Oliveira; Isabel Henriques; Daniel S. Read; Hyun S. Gweon; Rui G. Morgado; Sara Peixoto; António Correia; Amadeu M. V. M. Soares; Susana Loureiro. "Gut and faecal bacterial community of the terrestrial isopod Porcellionides pruinosus: potential use for monitoring exposure scenarios". Ecotoxicology (2021): https://doi.org/10.1007/s10646-021-02477-4.
    10.1007/s10646-021-02477-4
  24. S. Araújo; S. R. Azenha; I. Henriques; M. Tacão. "qnrA gene diversity in Shewanella spp.". Microbiology (2021): https://doi.org/10.1099/mic.0.001118.
    10.1099/mic.0.001118
  25. Araújo, S.; Sousa, M.; Tacão, M.; Baraúna, R.A.; Silva, A.; Ramos, R.; Alves, A.; Manaia, C.M.; Henriques, I.. "Carbapenem-resistant bacteria over a wastewater treatment process: Carbapenem-resistant Enterobacteriaceae in untreated wastewater and intrinsically-resistant bacteria in final effluent". Science of The Total Environment 782 (2021): 146892. http://dx.doi.org/10.1016/j.scitotenv.2021.146892.
    10.1016/j.scitotenv.2021.146892
  26. Araújo, Susana; Tacão, Marta; Baraúna, Rafael; Ramos, Rommel; Silva, Artur; Henriques, Isabel. "Genome analysis of two multidrug-resistant Escherichia coli O8:H9-ST48 strains isolated from lettuce". Gene 785 (2021): 145603. http://dx.doi.org/10.1016/j.gene.2021.145603.
    10.1016/j.gene.2021.145603
  27. Antonieta Gabriel; Sara Costa; Isabel Henriques; Isabel Lopes. "Effects of Long-Term Exposure to Increased Salinity on the Amphibian Skin Bacterium Erwinia toletana". Archives of Environmental Contamination and Toxicology (2021): https://doi.org/10.1007/s00244-021-00845-z.
    10.1007/s00244-021-00845-z
  28. Ana Rita Almeida; Marta Tacão; Joana Soares; Inês Domingues; Isabel Henriques. "Tetracycline-Resistant Bacteria Selected from Water and Zebrafish after Antibiotic Exposure". International Journal of Environmental Research and Public Health (2021): https://doi.org/10.3390/ijerph18063218.
    10.3390/ijerph18063218
  29. Almeida, Ana Rita; Domingues, Inês; Henriques, Isabel. "Zebrafish and water microbiome recovery after oxytetracycline exposure". Environmental Pollution 272 (2021): 116371. http://dx.doi.org/10.1016/j.envpol.2020.116371.
    10.1016/j.envpol.2020.116371
  30. Ralf Lopes; Danny Fuentes-Castillo; Herrison Fontana; Larissa Rodrigues; Karine Dantas; Louise Cerdeira; Isabel Henriques; Nilton Lincopan; Zackery Bulman. "Endophytic Lifestyle of Global Clones of Extended-Spectrum ß-Lactamase-Producing Priority Pathogens in Fresh Vegetables: a Trojan Horse Strategy Favoring Human Colonization?". mSystems (2021): https://doi.org/10.1128/mSystems.01125-20.
    10.1128/mSystems.01125-20
  31. Isabel Silva; Marta Tacão; Isabel Henriques. "Selection of antibiotic resistance by metals in a riverine bacterial community". Chemosphere 263 (2021): 127936-127936. https://doi.org/10.1016/j.chemosphere.2020.127936.
    10.1016/j.chemosphere.2020.127936
  32. Peixoto, S.; Khodaparast, Z.; Cornelis, G.; Lahive, E.; Green Etxabe, A.; Baccaro, M.; Papadiamantis, A.G.; et al. "Impact of Ag2S NPs on soil bacterial community – A terrestrial mesocosm approach". Ecotoxicology and Environmental Safety 206 (2021): 111405. http://dx.doi.org/10.1016/j.ecoenv.2020.111405.
    10.1016/j.ecoenv.2020.111405
  33. Peixoto, Sara; Henriques, Isabel; Loureiro, Susana. "Long-term effects of Cu(OH)2 nanopesticide exposure on soil microbial communities". Environmental Pollution 269 (2021): 116113. http://dx.doi.org/10.1016/j.envpol.2020.116113.
    10.1016/j.envpol.2020.116113
  34. Dias, Marcela França; de Castro, Giovanni Marques; de Paiva, Magna Cristina; de Paula Reis, Mariana; Facchin, Susanne; do Carmo, Anderson Oliveira; Alves, Marta Salgueiro; et al. "Exploring antibiotic resistance in environmental integron-cassettes through intI-attC amplicons deep sequencing". Brazilian Journal of Microbiology (2020): http://dx.doi.org/10.1007/s42770-020-00409-8.
    10.1007/s42770-020-00409-8
  35. Marano, Roberto B.M.; Fernandes, Telma; Manaia, Célia M.; Nunes, Olga; Morrison, Donald; Berendonk, Thomas U.; Kreuzinger, Norbert; et al. "A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants". Environment International 144 (2020): 106035. http://dx.doi.org/10.1016/j.envint.2020.106035.
    10.1016/j.envint.2020.106035
  36. Oliveira, Amanda M.S.; Baraúna, Rafael A.; Marcon, Davi J.; Lago, Letícia A.B.; Silva, Artur; Lusio, Joana; Tavares, Rafael D.S.; et al. "Occurrence, antibiotic-resistance and virulence of E. coli strains isolated from mangrove oysters (Crassostrea gasar) farmed in estuaries of Amazonia". Marine Pollution Bulletin 157 (2020): 111302. http://dx.doi.org/10.1016/j.marpolbul.2020.111302.
    10.1016/j.marpolbul.2020.111302
  37. Rodriguez-Mozaz, Sara; Vaz-Moreira, Ivone; Varela Della Giustina, Saulo; Llorca, Marta; Barceló, Damià; Schubert, Sara; Berendonk, Thomas U.; et al. "Antibiotic residues in final effluents of European wastewater treatment plants and their impact on the aquatic environment". Environment International 140 (2020): 105733. http://dx.doi.org/10.1016/j.envint.2020.105733.
    10.1016/j.envint.2020.105733
  38. Tavares, Rafael D.S.; Tacão, Marta; Figueiredo, Ana S.; Duarte, Ana S.; Esposito, Fernanda; Lincopan, Nilton; Manaia, Célia M.; Henriques, Isabel. "Genotypic and phenotypic traits of blaCTX-M-carrying Escherichia coli strains from an UV-C-treated wastewater effluent". Water Research (2020): 116079. http://dx.doi.org/10.1016/j.watres.2020.116079.
    In press • 10.1016/j.watres.2020.116079
  39. Teixeira, Pedro; Tacão, Marta; Pureza, Leide; Gonçalves, Joana; Silva, Artur; Cruz-Schneider, Maria Paula; Henriques, Isabel. "Occurrence of carbapenemase-producing Enterobacteriaceae in a Portuguese river: blaNDM, blaKPC and blaGES among the detected genes". Environmental Pollution 260 (2020): 113913. http://dx.doi.org/10.1016/j.envpol.2020.113913.
    10.1016/j.envpol.2020.113913
  40. Teixeira, Pedro; Tacão, Marta; Baraúna, Rafael A.; Silva, Artur; Henriques, Isabel. "Genomic analysis of Chromobacterium haemolyticum: insights into the species resistome, virulence determinants and genome plasticity". Molecular Genetics and Genomics (2020): http://dx.doi.org/10.1007/s00438-020-01676-8.
    10.1007/s00438-020-01676-8
  41. Alves, Jorianne; Dias, Larissa; Mateus, Jackeline; Marques, Joana; Graças, Diego; Ramos, Rommel; Seldin, Lucy; et al. "Resistome in Lake Bolonha, Brazilian Amazon: Identification of Genes Related to Resistance to Broad-Spectrum Antibiotics". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.00067.
    10.3389/fmicb.2020.00067
  42. Marta Salgueiro Alves; Anabela Pereira; Cláudia Vicente; Manuel Mota; Isabel Henriques. "Pseudomonas associated with Bursaphelenchus xylophilus, its insect vector and the host tree: A role in pine wilt disease?". Forest Pathology (2019): e12564-e12564. https://doi.org/10.1111/efp.12564.
    10.1111/efp.12564
  43. Almeida, A.R.; Tacão, M.; Machado, A.L.; Golovko, O.; Zlabek, V.; Domingues, I.; Henriques, I.. "Long-term effects of oxytetracycline exposure in zebrafish: A multi-level perspective". Chemosphere 222 (2019): 333-344. http://www.scopus.com/inward/record.url?eid=2-s2.0-85060692567&partnerID=MN8TOARS.
    10.1016/j.chemosphere.2019.01.147
  44. Fidalgo, C.; Proença, D.N.; Morais, P.V.; Henriques, I.; Alves, A.. "The endosphere of the salt marsh plant Halimione portulacoides is a diversity hotspot for the genus Salinicola: description of five novel species Salinicola halimionae sp. nov., Salinicola aestuarinus sp. nov., Salinicola endophyticus sp. nov., Salinicola halophyticus sp. nov. and Salinicola lusitanus sp. nov". International journal of systematic and evolutionary microbiology 69 1 (2019): 46-62. http://www.scopus.com/inward/record.url?eid=2-s2.0-85059493404&partnerID=MN8TOARS.
    10.1099/ijsem.0.003061
  45. Almeida, A.R.; Alves, M.; Domingues, I.; Henriques, I.. "The impact of antibiotic exposure in water and zebrafish gut microbiomes: A 16S rRNA gene-based metagenomic analysis". Ecotoxicology and Environmental Safety 186 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85073241872&partnerID=MN8TOARS.
    10.1016/j.ecoenv.2019.109771
  46. Santos, M.; Peixoto, S.; Pereira, J.L.; Luís, A.T.; Henriques, I.; Gonçalves, F.J.M.; Pereira, M.J.; Oliveira, H.; Vidal, T.. "Using flow cytometry for bacterioplankton community analysis as a complementary tool to Water Framework Directive to signal putatively impacted sites". Science of the Total Environment 695 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85070614907&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2019.133754
  47. Freitas, D.Y.; Araújo, S.; Folador, A.R.C.; Ramos, R.T.J.; Azevedo, J.S.N.; Tacão, M.; Silva, A.; Henriques, I.; Baraúna, R.A.. "Extended spectrum beta-lactamase-producing gram-negative bacteria recovered from an amazonian lake near the city of Belém, Brazil". Frontiers in Microbiology 10 FEB (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85065914157&partnerID=MN8TOARS.
    10.3389/fmicb.2019.00364
  48. Pärnänen, K.M.M.; Narciso-Da-Rocha, C.; Kneis, D.; Berendonk, T.U.; Cacace, D.; Do, T.T.; Elpers, C.; et al. "Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence". Science Advances 5 3 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85064041764&partnerID=MN8TOARS.
    10.1126/sciadv.aau9124
  49. Santos, J.D.C.; Coelho, E.; Silva, R.; Passos, C.P.; Teixeira, P.; Henriques, I.; Coimbra, M.A.. "Chemical composition and antimicrobial activity of Satureja montana byproducts essential oils". Industrial Crops and Products 137 (2019): 541-548. http://www.scopus.com/inward/record.url?eid=2-s2.0-85066291640&partnerID=MN8TOARS.
    10.1016/j.indcrop.2019.05.058
  50. Rocha, B.S.; Correia, M.G.; Pereira, A.; Henriques, I.; Da Silva, G.J.; Laranjinha, J.. "Inorganic nitrate prevents the loss of tight junction proteins and modulates inflammatory events induced by broad-spectrum antibiotics: A role for intestinal microbiota?". Nitric Oxide - Biology and Chemistry 88 (2019): 27-34. http://www.scopus.com/inward/record.url?eid=2-s2.0-85064183966&partnerID=MN8TOARS.
    10.1016/j.niox.2019.04.001
  51. Amorim, C.L.; Alves, M.; Castro, P.M.L.; Henriques, I.. "Bacterial community dynamics within an aerobic granular sludge reactor treating wastewater loaded with pharmaceuticals". Ecotoxicology and Environmental Safety 147 (2018): 905-912. http://www.scopus.com/inward/record.url?eid=2-s2.0-85030179135&partnerID=MN8TOARS.
    10.1016/j.ecoenv.2017.09.060
  52. Narciso-da-Rocha, C.; Rocha, J.; Vaz-Moreira, I.; Lira, F.; Tamames, J.; Henriques, I.; Martinez, J.L.; Manaia, C.M.. "Bacterial lineages putatively associated with the dissemination of antibiotic resistance genes in a full-scale urban wastewater treatment plant". Environment International 118 (2018): 179-188. http://www.scopus.com/inward/record.url?eid=2-s2.0-85047923292&partnerID=MN8TOARS.
    10.1016/j.envint.2018.05.040
  53. Silva, I.; Tacão, M.; Tavares, R.D.S.; Miranda, R.; Araújo, S.; Manaia, C.M.; Henriques, I.. "Fate of cefotaxime-resistant Enterobacteriaceae and ESBL-producers over a full-scale wastewater treatment process with UV disinfection". Science of the Total Environment 639 (2018): 1028-1037. http://www.scopus.com/inward/record.url?eid=2-s2.0-85047305678&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2018.05.229
  54. Alves, M.; Pereira, A.; Vicente, C.; Matos, P.; Henriques, J.; Lopes, H.; Nascimento, F.; et al. "The role of bacteria in Pine Wilt Disease: Insights from microbiome analysis". FEMS Microbiology Ecology 94 7 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85050613443&partnerID=MN8TOARS.
    10.1093/femsec/fiy077
  55. Tacão, M.; Araújo, S.; Vendas, M.; Alves, A.; Henriques, I.. "Shewanella species as the origin of blaOXA-48 genes: insights into gene diversity, associated phenotypes and possible transfer mechanisms". International Journal of Antimicrobial Agents 51 3 (2018): 340-348. http://www.scopus.com/inward/record.url?eid=2-s2.0-85041614163&partnerID=MN8TOARS.
    10.1016/j.ijantimicag.2017.05.014
  56. Da Costa, W.L.O.; De Aragão Araújo, C.L.; Dias, L.M.; De Sousa Pereira, L.C.; Alves, J.T.C.; Araújo, F.A.; Folador, E.L.; et al. "Functional annotation of hypothetical proteins from the Exiguobacterium antarcticum strain B7 reveals proteins involved in adaptation to extreme environments, including high arsenic resistance". PLoS ONE 13 6 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85049006411&partnerID=MN8TOARS.
    10.1371/journal.pone.0198965
  57. Tacão, M.; Tavares, R.S.; Teixeira, P.; Roxo, I.; Ramalheira, E.; Ferreira, S.; Henriques, I.. "Mcr-1 and blakpc-3 in escherichia coli sequence type 744 after meropenem and colistin therapy, Portugal". Emerging Infectious Diseases 23 8 (2017): 1419-1421. http://www.scopus.com/inward/record.url?eid=2-s2.0-85025078429&partnerID=MN8TOARS.
    10.3201/eid2308.170162
  58. Oliveira, J.M.M.; Galhano, V.; Henriques, I.; Soares, A.M.V.M.; Loureiro, S.. "Basagran® induces developmental malformations and changes the bacterial community of zebrafish embryos". Environmental Pollution 221 (2017): 52-63. http://www.scopus.com/inward/record.url?eid=2-s2.0-85008388663&partnerID=MN8TOARS.
    10.1016/j.envpol.2016.10.028
  59. Pires, C.; Franco, A.R.; Pereira, S.I.A.; Henriques, I.; Correia, A.; Magan, N.; Castro, P.M.L.. "Metal(loid)-Contaminated Soils as a Source of Culturable Heterotrophic Aerobic Bacteria for Remediation Applications". Geomicrobiology Journal 34 9 (2017): 760-768. http://www.scopus.com/inward/record.url?eid=2-s2.0-85016927466&partnerID=MN8TOARS.
    10.1080/01490451.2016.1261968
  60. Araújo, S.; A.T. Silva, I.; Tacão, M.; Patinha, C.; Alves, A.; Henriques, I.. "Characterization of antibiotic resistant and pathogenic Escherichia coli in irrigation water and vegetables in household farms". International Journal of Food Microbiology 257 (2017): 192-200. http://www.scopus.com/inward/record.url?eid=2-s2.0-85021402680&partnerID=MN8TOARS.
    10.1016/j.ijfoodmicro.2017.06.020
  61. Leite, L.; Jude-Lemeilleur, F.; Raymond, N.; Henriques, I.; Garabetian, F.; Alves, A.. "Phylogenetic diversity and functional characterization of the Manila clam microbiota: a culture-based approach". Environmental Science and Pollution Research 24 27 (2017): 21721-21732. http://www.scopus.com/inward/record.url?eid=2-s2.0-85026530655&partnerID=MN8TOARS.
    10.1007/s11356-017-9838-z
  62. Fidalgo, C.; Rocha, J.; Proença, D.N.; Morais, P.V.; Alves, A.; Henriques, I.. "Saccharospirillum correiae sp. Nov., an endophytic bacterium isolated from the halophyte Halimione portulacoides". International Journal of Systematic and Evolutionary Microbiology 67 6 (2017): 2026-2030. http://www.scopus.com/inward/record.url?eid=2-s2.0-85022070017&partnerID=MN8TOARS.
    10.1099/ijsem.0.001914
  63. Leal, J.F.; Henriques, I.S.; Correia, A.; Santos, E.B.H.; Esteves, V.I.. "Antibacterial activity of oxytetracycline photoproducts in marine aquaculture's water". Environmental Pollution 220 (2017): 644-649. http://www.scopus.com/inward/record.url?eid=2-s2.0-85000405825&partnerID=MN8TOARS.
    10.1016/j.envpol.2016.10.021
  64. Tacão, M.; Silva, I.; Henriques, I.. "Culture-independent methods reveal high diversity of OXA-48-like genes in water environments". Journal of Water and Health 15 4 (2017): 519-525. http://www.scopus.com/inward/record.url?eid=2-s2.0-85027295327&partnerID=MN8TOARS.
    10.2166/wh.2017.260
  65. Fidalgo, C.; Martins, R.; Proença, D.N.; Morais, P.V.; Alves, A.; Henriques, I.. "Zunongwangia endophytica sp. Nov., an endophyte isolated from the salt marsh plant, halimione portulacoides, and emended description of the genus Zunongwangia". International Journal of Systematic and Evolutionary Microbiology 67 8 (2017): 3004-3009. http://www.scopus.com/inward/record.url?eid=2-s2.0-85029469740&partnerID=MN8TOARS.
    10.1099/ijsem.0.002069
  66. Fidalgo, C.; Rocha, J.; Martins, R.; Proença, D.N.; Morais, P.V.; Henriques, I.; Alves, A.. "Altererythrobacter halimionae sp. nov. and Altererythrobacter endophyticus sp. nov., two endophytes from the salt marsh plant Halimione portulacoides". International Journal of Systematic and Evolutionary Microbiology 67 8 (2017): 3057-3062. http://www.scopus.com/inward/record.url?eid=2-s2.0-85029483973&partnerID=MN8TOARS.
    10.1099/ijsem.0.002079
  67. Alves, M.; Pereira, A.; Matos, P.; Henriques, J.; Vicente, C.; Aikawa, T.; Hasegawa, K.; et al. "Bacterial community associated to the pine wilt disease insect vectors Monochamus galloprovincialis and Monochamus alternatus". Scientific Reports 6 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84964033548&partnerID=MN8TOARS.
    10.1038/srep23908
  68. Rocha, J.; Tacão, M.; Fidalgo, C.; Alves, A.; Henriques, I.. "Diversity of endophytic Pseudomonas in Halimione portulacoides from metal(loid)-polluted salt marshes". Environmental Science and Pollution Research 23 13 (2016): 13255-13267. http://www.scopus.com/inward/record.url?eid=2-s2.0-84962306154&partnerID=MN8TOARS.
    10.1007/s11356-016-6483-x
  69. Gomes, J.C.M.; de Azevedo, J.S.N.; Veras, A.A.O.; Alves, J.T.C.; Henriques, I.; Correia, A.; da Silva, A.L.C.; Carneiro, A.R.. "Draft genome sequence of Psychrobacter sp. ENNN9_III, a strain isolated from water in a polluted temperate estuarine system (Ria de Aveiro, Portugal)". Genomics Data 8 (2016): 21-24. http://www.scopus.com/inward/record.url?eid=2-s2.0-84959344631&partnerID=MN8TOARS.
    10.1016/j.gdata.2016.02.013
  70. Henriques, I.; Tacão, M.; Leite, L.; Fidalgo, C.; Araújo, S.; Oliveira, C.; Alves, A.. "Co-selection of antibiotic and metal(loid) resistance in gram-negative epiphytic bacteria from contaminated salt marshes". Marine Pollution Bulletin 109 1 (2016): 427-434. http://www.scopus.com/inward/record.url?eid=2-s2.0-84992381919&partnerID=MN8TOARS.
    10.1016/j.marpolbul.2016.05.031
  71. Teixeira, P.; Tacão, M.; Alves, A.; Henriques, I.. "Antibiotic and metal resistance in a ST395 Pseudomonas aeruginosa environmental isolate: A genomics approach". Marine Pollution Bulletin 110 1 (2016): 75-81. http://www.scopus.com/inward/record.url?eid=2-s2.0-84978472258&partnerID=MN8TOARS.
    10.1016/j.marpolbul.2016.06.086
  72. Fidalgo, C.; Henriques, I.; Rocha, J.; Tacão, M.; Alves, A.. "Culturable endophytic bacteria from the salt marsh plant Halimione portulacoides: phylogenetic diversity, functional characterization, and influence of metal(loid) contamination". Environmental Science and Pollution Research 23 10 (2016): 10200-10214. http://www.scopus.com/inward/record.url?eid=2-s2.0-84957936768&partnerID=MN8TOARS.
    10.1007/s11356-016-6208-1
  73. Fidalgo, C.; Riesco, R.; Henriques, I.; Trujillo, M.E.; Alves, A.. "Microbacterium diaminobutyricum sp. Nov., isolated from halimione portulacoides, which contains diaminobutyric acid in its cell wall, and emended description of the genus microbacterium". International Journal of Systematic and Evolutionary Microbiology 66 11 (2016): 4492-4500. http://www.scopus.com/inward/record.url?eid=2-s2.0-85006017986&partnerID=MN8TOARS.
    10.1099/ijsem.0.001379
  74. Pereira, S.I.A.; Pires, C.; Henriques, I.; Correia, A.; Magan, N.; Castro, P.M.L.. "Assessment of rhizospheric culturable bacteria of Phragmites australis and Juncus effusus from polluted sites". Journal of Basic Microbiology 55 10 (2015): 1179-1190. http://www.scopus.com/inward/record.url?eid=2-s2.0-84942197213&partnerID=MN8TOARS.
    10.1002/jobm.201500010
  75. Tacão, M.; Correia, A.; Henriques, I.S.. "Low prevalence of carbapenem-resistant bacteria in river water: Resistance is mostly related to intrinsic mechanisms". Microbial Drug Resistance 21 5 (2015): 497-506. http://www.scopus.com/inward/record.url?eid=2-s2.0-84943224890&partnerID=MN8TOARS.
    10.1089/mdr.2015.0072
  76. Trindade, F.; Amado, F.; Pinto da Costa, J.; Ferreira, R.; Maia, C.; Henriques, I.; Colaço, B.; Vitorino, R.. "Salivary peptidomic as a tool to disclose new potential antimicrobial peptides". Journal of Proteomics 115 (2015): 49-57. http://www.scopus.com/inward/record.url?eid=2-s2.0-84922360452&partnerID=MN8TOARS.
    10.1016/j.jprot.2014.12.004
  77. Henriques, I.; Araújo, S.; Pereira, A.; Menezes-Oliveira, V.B.; Correia, A.; Soares, A.M.V.M.; Scott-Fordsmand, J.J.; Amorim, M.J.B.. "Combined effect of temperature and copper pollution on soil bacterial community: Climate change and regional variation aspects". Ecotoxicology and Environmental Safety 111 (2015): 153-159. http://www.scopus.com/inward/record.url?eid=2-s2.0-84908608699&partnerID=MN8TOARS.
    10.1016/j.ecoenv.2014.10.010
  78. Alves, M.S.; Pereira, A.; Araújo, S.M.; Castro, B.B.; Correia, A.C.M.; Henriques, I.. "Seawater is a reservoir of multi-resistant Escherichia coli, including strains hosting plasmid-mediated quinolones resistance and extended-spectrum beta-lactamases genes". Frontiers in Microbiology 5 AUG (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84930669499&partnerID=MN8TOARS.
    10.3389/fmicb.2014.00426
  79. Moura, A.; Araújo, S.; Alves, M.; Henriques, I.; Pereira, A.; Correia, A.C.M.. "The contribution of Escherichia coli from human and animal sources to the integron gene pool in coastal waters". Frontiers in Microbiology 5 AUG (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84929307810&partnerID=MN8TOARS.
    10.3389/fmicb.2014.00419
  80. Santos, A.L.; Baptista, I.; Gomes, N.C.M.; Henriques, I.; Almeida, A.; Correia, A.; Cunha, A.. "Contribution of chemical water properties to the differential responses of bacterioneuston and bacterioplankton to ultraviolet-B radiation". FEMS Microbiology Ecology 87 2 (2014): 517-535. http://www.scopus.com/inward/record.url?eid=2-s2.0-84895073877&partnerID=MN8TOARS.
    10.1111/1574-6941.12239
  81. Cruz, A.; Henriques, I.; Sousa, A.C.A.; Baptista, I.; Almeida, A.; Takahashi, S.; Tanabe, S.; et al. "A microcosm approach to evaluate the degradation of tributyltin (TBT) by Aeromonas molluscorum Av27 in estuarine sediments". Environmental Research 132 (2014): 430-437. http://www.scopus.com/inward/record.url?eid=2-s2.0-84901036060&partnerID=MN8TOARS.
    10.1016/j.envres.2014.04.031
  82. Tacão, M.; Moura, A.; Correia, A.; Henriques, I.. "Co-resistance to different classes of antibiotics among ESBL-producers from aquatic systems". Water Research 48 1 (2014): 100-107. http://www.scopus.com/inward/record.url?eid=2-s2.0-84888429754&partnerID=MN8TOARS.
    10.1016/j.watres.2013.09.021
  83. Araújo, S.; Henriques, I.S.; Leandro, S.M.; Alves, A.; Pereira, A.; Correia, A.. "Gulls identified as major source of fecal pollution in coastal waters: A microbial source tracking study". Science of the Total Environment 470-471 (2014): 84-91. http://www.scopus.com/inward/record.url?eid=2-s2.0-84886016689&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2013.09.075
  84. Santos, A.L.; Gomes, N.C.M.; Henriques, I.; Almeida, A.; Correia, A.; Cunha, Â.. "Growth conditions influence UVB sensitivity and oxidative damage in an estuarine bacterial isolate". Photochemical and Photobiological Sciences 12 6 (2013): 974-986. http://www.scopus.com/inward/record.url?eid=2-s2.0-84882989415&partnerID=MN8TOARS.
    10.1039/c3pp25353h
  85. Santos, A.L.; Moreirinha, C.; Lopes, D.; Esteves, A.C.; Henriques, I.; Almeida, A.; Domingues, M.R.M.; et al. "Effects of UV radiation on the lipids and proteins of bacteria studied by mid-infrared spectroscopy". Environmental Science and Technology 47 12 (2013): 6306-6315. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879197783&partnerID=MN8TOARS.
    10.1021/es400660g
  86. Oliveira, C.S.; Moura, A.; Henriques, I.; Brown, C.J.; Rogers, L.M.; Top, E.M.; Correia, A.. "Comparative genomics of IncP-1e plasmids from water environments reveals diverse and unique accessory genetic elements". Plasmid 70 3 (2013): 412-419. http://www.scopus.com/inward/record.url?eid=2-s2.0-84887620046&partnerID=MN8TOARS.
    10.1016/j.plasmid.2013.06.002
  87. Santos, A.L.; Oliveira, V.; Baptista, I.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "Wavelength dependence of biological damage induced by UV radiation on bacteria". Archives of Microbiology 195 1 (2013): 63-74. http://www.scopus.com/inward/record.url?eid=2-s2.0-84872271352&partnerID=MN8TOARS.
    10.1007/s00203-012-0847-5
  88. Azevedo, J.S.N.; Araújo, S.; Oliveira, C.S.; Correia, A.; Henriques, I.. "Analysis of antibiotic resistance in bacteria isolated from the surface microlayer and underlying water of an estuarine environment". Microbial Drug Resistance 19 1 (2013): 64-71. http://www.scopus.com/inward/record.url?eid=2-s2.0-84872972885&partnerID=MN8TOARS.
    10.1089/mdr.2012.0084
  89. Chouchani, C.; Marrakchi, R.; Henriques, I.; Correia, A.. "Occurrence of IMP-8, IMP-10, and IMP-13 metallo-ß-lactamases located on class 1 integrons and other extended-spectrum ß-lactamases in bacterial isolates from Tunisian rivers". Scandinavian Journal of Infectious Diseases 45 2 (2013): 95-103. http://www.scopus.com/inward/record.url?eid=2-s2.0-84872336876&partnerID=MN8TOARS.
    10.3109/00365548.2012.717712
  90. Santos, A.L.; Gomes, N.C.M.; Henriques, I.; Almeida, A.; Correia, A.; Cunha, A.. "Role of transition metals in UV-B-induced damage to bacteria". Photochemistry and Photobiology 89 3 (2013): 640-648. http://www.scopus.com/inward/record.url?eid=2-s2.0-84876811301&partnerID=MN8TOARS.
    10.1111/php.12049
  91. Henriques, I.; Ramos, R.T.J.; Baraúna, R.A.; de Sá, P.H.; Almeida, D.M.; Carneiro, A.R.; Barbosa, S.; et al. "Draft genome sequence of Serratia fonticola UTAD54, a carbapenem-resistant strain isolated from drinking water". Genome Announcements 1 6 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84999853580&partnerID=MN8TOARS.
    10.1128/genomeA.00970-13
  92. Tacão, M.; Correia, A.; Henriques, I.. "Environmental Shewanella xiamenensis strains that carry bla OXA-48 or blaOXA-204 genes: Additional proof for bla OXA-48-Like gene origin". Antimicrobial Agents and Chemotherapy 57 12 (2013): 6399-6400. http://www.scopus.com/inward/record.url?eid=2-s2.0-84887467828&partnerID=MN8TOARS.
    10.1128/AAC.00771-13
  93. Pereira, A.; Santos, A.; Tacão, M.; Alves, A.; Henriques, I.; Correia, A.. "Genetic diversity and antimicrobial resistance of Escherichia coli from Tagus estuary (Portugal)". Science of the Total Environment 461-462 (2013): 65-71. http://www.scopus.com/inward/record.url?eid=2-s2.0-84878388481&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2013.04.067
  94. Carneiro, A.R.; Ramos, R.T.J.; Baraúna, R.A.; de Sá, P.H.; Almeida, D.M.; Barbosa, S.; Pereira, A.; et al. "Draft genome sequence of Serratia fonticola LMG 7882Tisolated from freshwater". Genome Announcements 1 6 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84999791242&partnerID=MN8TOARS.
    10.1128/genomeA.00971-13
  95. Azevedo, J.S.N.; Correia, A.; Henriques, I.. "Molecular analysis of the diversity of genus Psychrobacter present within a temperate estuary". FEMS Microbiology Ecology 84 3 (2013): 451-460. http://www.scopus.com/inward/record.url?eid=2-s2.0-84877718052&partnerID=MN8TOARS.
    10.1111/1574-6941.12075
  96. Henriques, I.S.; Araújo, S.; Azevedo, J.S.N.; Alves, M.S.; Chouchani, C.; Pereira, A.; Correia, A.. "Prevalence and diversity of carbapenem-resistant bacteria in untreated drinking water in Portugal". Microbial Drug Resistance 18 5 (2012): 531-537. http://www.scopus.com/inward/record.url?eid=2-s2.0-84866509283&partnerID=MN8TOARS.
    10.1089/mdr.2012.0029
  97. Martins, G.; Henriques, I.; Ribeiro, D.C.; Correia, A.; Bodelier, P.L.E.; Cruz, J.V.; Brito, A.G.; Nogueira, R.. "Bacterial Diversity and Geochemical Profiles in Sediments from Eutrophic Azorean Lakes". Geomicrobiology Journal 29 8 (2012): 704-715. http://www.scopus.com/inward/record.url?eid=2-s2.0-84863819575&partnerID=MN8TOARS.
    10.1080/01490451.2011.619633
  98. Santos, A.L.; Gomes, N.C.M.; Henriques, I.; Almeida, A.; Correia, A.; Cunha, A.. "Contribution of reactive oxygen species to UV-B-induced damage in bacteria". Journal of Photochemistry and Photobiology B: Biology 117 (2012): 40-46. http://www.scopus.com/inward/record.url?eid=2-s2.0-84866647240&partnerID=MN8TOARS.
    10.1016/j.jphotobiol.2012.08.016
  99. Correia, A.; Henriques, I.; Tacão, M.. "Carbapenem-resistant bacteria in river water,Bactérias resistentes a carbapenemos em águas de rios". Salud(i)Ciencia 19 5 (2012): 452-454. http://www.scopus.com/inward/record.url?eid=2-s2.0-84873379210&partnerID=MN8TOARS.
  100. Tacão, M.; Correia, A.; Henriques, I.. "Resistance to broad-spectrum antibiotics in aquatic systems: Anthropogenic activities modulate the dissemination of blaCTX-M-like genes". Applied and Environmental Microbiology 78 12 (2012): 4134-4140. http://www.scopus.com/inward/record.url?eid=2-s2.0-84864111719&partnerID=MN8TOARS.
    10.1128/AEM.00359-12
  101. Santos, A.L.; Baptista, I.; Lopes, S.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "The UV responses of bacterioneuston and bacterioplankton isolates depend on the physiological condition and involve a metabolic shift". FEMS Microbiology Ecology 80 3 (2012): 646-658. http://www.scopus.com/inward/record.url?eid=2-s2.0-84860687900&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2012.01336.x
  102. Moura, A.; Jové, T.; Ploy, M.-C; Henriques, I.; Correia, A.. "Diversity of gene cassette promoters in class 1 integrons from wastewater environments". Applied and Environmental Microbiology 78 15 (2012): 5413-5416. http://www.scopus.com/inward/record.url?eid=2-s2.0-84866166132&partnerID=MN8TOARS.
    10.1128/AEM.00042-12
  103. Cleary, D.F.R.; Oliveira, V.; Gomes, N.C.M.; Pereira, A.; Henriques, I.; Marques, B.; Almeida, A.; et al. "Impact of sampling depth and plant species on local environmental conditions, microbiological parameters and bacterial composition in a mercury contaminated salt marsh". Marine Pollution Bulletin 64 2 (2012): 263-271. http://www.scopus.com/inward/record.url?eid=2-s2.0-84856267315&partnerID=MN8TOARS.
    10.1016/j.marpolbul.2011.11.020
  104. Santos, A.L.; Oliveira, V.; Baptista, I.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "Effects of UV-B radiation on the structural and physiological diversity of bacterioneuston and bacterioplankton". Applied and Environmental Microbiology 78 6 (2012): 2066-2069. http://www.scopus.com/inward/record.url?eid=2-s2.0-84857831854&partnerID=MN8TOARS.
    10.1128/AEM.06344-11
  105. Moura, A.; Oliveira, C.; Henriques, I.; Smalla, K.; Correia, A.. "Broad diversity of conjugative plasmids in integron-carrying bacteria from wastewater environments". FEMS Microbiology Letters 330 2 (2012): 157-164. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859439313&partnerID=MN8TOARS.
    10.1111/j.1574-6968.2012.02544.x
  106. Azevedo, J.S.N.; Ramos, I.; Araújo, S.; Oliveira, C.S.; Correia, A.; Henriques, I.S.. "Spatial and temporal analysis of estuarine bacterioneuston and bacterioplankton using culture-dependent and culture-independent methodologies". Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology 101 4 (2012): 819-835. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862651668&partnerID=MN8TOARS.
    10.1007/s10482-012-9697-z
  107. Moura, A.; Pereira, C.; Henriques, I.; Correia, A.. "Novel gene cassettes and integrons in antibiotic-resistant bacteria isolated from urban wastewaters". Research in Microbiology 163 2 (2012): 92-100. http://www.scopus.com/inward/record.url?eid=2-s2.0-84858004667&partnerID=MN8TOARS.
    10.1016/j.resmic.2011.10.010
  108. Oliveira, C.S.; Lázaro, B.; Azevedo, J.S.N.; Henriques, I.; Almeida, A.; Correia, A.. "New molecular variants of epsilon and beta IncP-1 plasmids are present in estuarine waters". Plasmid 67 3 (2012): 252-258. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859896762&partnerID=MN8TOARS.
    10.1016/j.plasmid.2011.11.002
  109. Santos, A.L.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "Effects of ultraviolet radiation on the abundance, diversity and activity of bacterioneuston and bacterioplankton: Insights from microcosm studies". Aquatic Sciences 73 1 (2011): 63-77. http://www.scopus.com/inward/record.url?eid=2-s2.0-79251609461&partnerID=MN8TOARS.
    10.1007/s00027-010-0160-9
  110. Santos, A.L.; Lopes, S.; Baptista, I.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, Â.. "Diversity in UV sensitivity and recovery potential among bacterioneuston and bacterioplankton isolates". Letters in Applied Microbiology 52 4 (2011): 360-366. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952531449&partnerID=MN8TOARS.
    10.1111/j.1472-765X.2011.03011.x
  111. Matos, A.; Borges, M.-T.; Peixe, C.; Henriques, I.; Pereira, C.M.; Castro, P.M.L.. "A molecular and multivariate approach to the microbial community of a commercial shallow raceway marine recirculation system operating with a Moving Bed Biofilter". Aquaculture Research 42 9 (2011): 1308-1322. http://www.scopus.com/inward/record.url?eid=2-s2.0-79961195347&partnerID=MN8TOARS.
    10.1111/j.1365-2109.2010.02719.x
  112. Moura, A.; Henriques, I.; Smalla, K.; Correia, A.. "Wastewater bacterial communities bring together broad-host range plasmids, integrons and a wide diversity of uncharacterized gene cassettes". Research in Microbiology 161 1 (2010): 58-66. http://www.scopus.com/inward/record.url?eid=2-s2.0-74649085158&partnerID=MN8TOARS.
    10.1016/j.resmic.2009.11.004
  113. Calhau, V.; Tacão, M.; Morgado, F.; Correia, A.; Henriques, I.. "PCR-DGGE-based methodologies to assess diversity and dynamics of Aeromonas communities". Journal of Applied Microbiology 108 2 (2010): 611-623. http://www.scopus.com/inward/record.url?eid=2-s2.0-74049101601&partnerID=MN8TOARS.
    10.1111/j.1365-2672.2009.04452.x
  114. Moura, A.; Tacão, M.; Henriques, I.; Dias, J.; Ferreira, P.; Correia, A.. "Characterization of bacterial diversity in two aerated lagoons of a wastewater treatment plant using PCR-DGGE analysis". Microbiological Research 164 5 (2009): 560-569. http://www.scopus.com/inward/record.url?eid=2-s2.0-70249103518&partnerID=MN8TOARS.
    10.1016/j.micres.2007.06.005
  115. Santos, A.L.; Mendes, C.; Gomes, N.C.M.; Henriques, I.; Correia, A.; Almeida, A.; Cunha, A.. "Short-term variability of abundance, diversity and activity of estuarine bacterioneuston and bacterioplankton". Journal of Plankton Research 31 12 (2009): 1545-1555. http://www.scopus.com/inward/record.url?eid=2-s2.0-70449625322&partnerID=MN8TOARS.
    10.1093/plankt/fbp083
  116. Moura, A.; Soares, M.; Pereira, C.; Leitão, N.; Henriques, I.; Correia, A.. "INTEGRALL: A database and search engine for integrons, integrases and gene cassettes". Bioinformatics 25 8 (2009): 1096-1098. http://www.scopus.com/inward/record.url?eid=2-s2.0-64549119505&partnerID=MN8TOARS.
    10.1093/bioinformatics/btp105
  117. Calheiros, C.S.C.; Duque, A.F.; Moura, A.; Henriques, I.S.; Correia, A.; Rangel, A.O.S.S.; Castro, P.M.L.. "Substrate effect on bacterial communities from constructed wetlands planted with Typha latifolia treating industrial wastewater". Ecological Engineering 35 5 (2009): 744-753. http://www.scopus.com/inward/record.url?eid=2-s2.0-63449124954&partnerID=MN8TOARS.
    10.1016/j.ecoleng.2008.11.010
  118. Calheiros, C.S.C.; Duque, A.F.; Moura, A.; Henriques, I.S.; Correia, A.; Rangel, A.O.S.S.; Castro, P.M.L.. "Changes in the bacterial community structure in two-stage constructed wetlands with different plants for industrial wastewater treatment". Bioresource Technology 100 13 (2009): 3228-3235. http://www.scopus.com/inward/record.url?eid=2-s2.0-63449116471&partnerID=MN8TOARS.
    10.1016/j.biortech.2009.02.033
  119. Henriques, I.S.; Fonseca, F.; Alves, A.; Saavedra, M.J.; Correia, A.. "Tetracycline-resistance genes in Gram-negative isolates from estuarine waters". Letters in Applied Microbiology 47 6 (2008): 526-533. http://www.scopus.com/inward/record.url?eid=2-s2.0-56549100091&partnerID=MN8TOARS.
    10.1111/j.1472-765X.2008.02452.x
  120. Albano, H.; Henriques, I.; Correia, A.; Hogg, T.; Teixeira, P.. "Characterization of microbial population of 'Alheira' (a traditional Portuguese fermented sausage) by PCR-DGGE and traditional cultural microbiological methods". Journal of Applied Microbiology 105 6 (2008): 2187-2194. http://www.scopus.com/inward/record.url?eid=2-s2.0-56649094482&partnerID=MN8TOARS.
    10.1111/j.1365-2672.2008.03947.x
  121. De Figueiredo, D.R.; Pereira, M.J.; Moura, A.; Silva, L.; Bárrios, S.; Fonseca, F.; Henriques, I.; Correia, A.. "Bacterial community composition over a dry winter in meso- and eutrophic Portuguese water bodies". FEMS Microbiology Ecology 59 3 (2007): 638-650. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847719968&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2006.00241.x
  122. Moura, A.; Henriques, I.; Ribeiro, R.; Correia, A.. "Prevalence and characterization of integrons from bacteria isolated from a slaughterhouse wastewater treatment plant". Journal of Antimicrobial Chemotherapy 60 6 (2007): 1243-1250. http://www.scopus.com/inward/record.url?eid=2-s2.0-36448968228&partnerID=MN8TOARS.
    10.1093/jac/dkm340
  123. Fonseca, F.; Sarmento, A.C.; Henriques, I.; Samyn, B.; Van Beeumen, J.; Domingues, P.; Domingues, M.R.; Saavedra, M.J.; Correia, A.. "Biochemical characterization of SFC-1, a class A carbapenem-hydrolyzing ß-lactamase". Antimicrobial Agents and Chemotherapy 51 12 (2007): 4512-4514. http://www.scopus.com/inward/record.url?eid=2-s2.0-36749039667&partnerID=MN8TOARS.
    10.1128/AAC.00491-07
  124. Alves, A.; Phillips, A.J.L.; Henriques, I.; Correia, A.. "Rapid differentiation of species of Botryosphaeriaceae by PCR fingerprinting". Research in Microbiology 158 2 (2007): 112-121. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847388553&partnerID=MN8TOARS.
    10.1016/j.resmic.2006.10.003
  125. Henriques, I.; Moura, A.; Alves, A.; Saavedra, M.J.; Correia, A.. "Analysing diversity among ß-lactamase encoding genes in aquatic environments". FEMS Microbiology Ecology 56 3 (2006): 418-429. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646562168&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2006.00073.x
  126. Henriques, I.S.; Alves, A.; Tacão, M.; Almeida, A.; Cunha, A.; Correia, A.. "Seasonal and spatial variability of free-living bacterial community composition along an estuarine gradient (Ria de Aveiro, Portugal)". Estuarine, Coastal and Shelf Science 68 1 (2006): 139-148. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646889784&partnerID=MN8TOARS.
    10.1016/j.ecss.2006.01.015
  127. Carvalho, M.F.; Ferreira Jorge, R.; Pacheco, C.C.; De Marco, P.; Henriques, I.S.; Correia, A.; Castro, P.M.L.. "Long-term performance and microbial dynamics of an up-flow fixed bed reactor established for the biodegradation of fluorobenzene". Applied Microbiology and Biotechnology 71 4 (2006): 555-562. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745936577&partnerID=MN8TOARS.
    10.1007/s00253-005-0175-7
  128. Emanuelsson, M.A.E.; Henriques, I.S.; Ferreira Jorge, R.M.; Castro, P.M.L.. "Biodegradation of 2-fluorobenzoate in upflow fixed bed bioreactors operated with different growth support materials". Journal of Chemical Technology and Biotechnology 81 9 (2006): 1577-1585. http://www.scopus.com/inward/record.url?eid=2-s2.0-33747480950&partnerID=MN8TOARS.
    10.1002/jctb.1565
  129. Henriques, I.S.; Fonseca, F.; Alves, A.; Saavedra, M.J.; Correia, A.. "Occurrence and diversity of integrons and ß-lactamase genes among ampicillin-resistant isolates from estuarine waters". Research in Microbiology 157 10 (2006): 938-947. http://www.scopus.com/inward/record.url?eid=2-s2.0-34548630152&partnerID=MN8TOARS.
    10.1016/j.resmic.2006.09.003
  130. Alves, A.; Phillips, A.J.L.; Henriques, I.; Correia, A.. "Evaluation of amplified ribosomal DNA restriction analysis as a method for the identification of Botryosphaeria species". FEMS Microbiology Letters 245 2 (2005): 221-229. http://www.scopus.com/inward/record.url?eid=2-s2.0-17144428889&partnerID=MN8TOARS.
    10.1016/j.femsle.2005.03.005
  131. Tacão, M.; Moura, A.; Alves, A.; Henriques, I.; Saavedra, M.J.; Correia, A.. "Evaluation of 16S rDNA- and gyrB-DGGE for typing members of the genus Aeromonas". FEMS Microbiology Letters 246 1 (2005): 11-18. http://www.scopus.com/inward/record.url?eid=2-s2.0-18144391544&partnerID=MN8TOARS.
    10.1016/j.femsle.2005.03.033
  132. Henriques, I.; Moura, A.; Alves, A.; Saavedra, M.J.; Correia, A.. "Molecular characterization of a carbapenem-hydrolyzing class A ß-lactamase, SFC-1, from Serratia fonticola UTAD54". Antimicrobial Agents and Chemotherapy 48 6 (2004): 2321-2324. http://www.scopus.com/inward/record.url?eid=2-s2.0-2542499764&partnerID=MN8TOARS.
    10.1128/AAC.48.6.2321-2324.2004
  133. Henriques, I.S.; Almeida, A.; Cunha, A.; Correia, A.. "Molecular sequence analysis of prokaryotic diversity in the middle and outer sections of the Portuguese estuary Ria de Aveiro". FEMS Microbiology Ecology 49 2 (2004): 269-279. http://www.scopus.com/inward/record.url?eid=2-s2.0-3142782432&partnerID=MN8TOARS.
    10.1016/j.femsec.2004.04.003
  134. Alves, A.; Henriques, I.; Fragoeiro, S.; Santos, C.; Phillips, A.J.L.; Correia, A.. "Applicability of rep-PCR genomic fingerprinting to molecular discrimination of members of the genera Phaeoacremonium and Phaeomoniella". Plant Pathology 53 5 (2004): 629-634. http://www.scopus.com/inward/record.url?eid=2-s2.0-7044246166&partnerID=MN8TOARS.
    10.1111/j.1365-3059.2004.01069.x
  135. Saavedra, M.J.; Peixe, L.; Sousa, J.C.; Henriques, I.; Alves, A.; Correia, A.. "Sfh-I, a subclass B2 metallo-ß-lactamase from a Serratia fonticola environmental isolate". Antimicrobial Agents and Chemotherapy 47 7 (2003): 2330-2333. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038311982&partnerID=MN8TOARS.
    10.1128/AAC.47.7.2330-2333.2003
  136. Alves, A.; Santos, O.; Henriques, I.; Correia, A.. "Evaluation of methods for molecular typing and identification of members of the genus Brevibacterium and other related species". FEMS Microbiology Letters 213 2 (2002): 205-211. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037031136&partnerID=MN8TOARS.
    10.1016/S0378-1097(02)00818-2
  137. Mendo, S.A.L.V.; Henriques, I.S.; Correia, A.C.M.; Duarte, J.M.C.. "Genetic characterization of a new thermotolerant Bacillus licheniformis strain". Current Microbiology 40 2 (2000): 137-139. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033982486&partnerID=MN8TOARS.
    10.1007/s002849910028

Intellectual property

Copyright registration
  1. 2013. "Public Web Database INTEGRALL (registered intellectual property n.º 5627/2013) – http://integrall.bio.ua.pt/: database dedicated to integrons and gene cassettes.".
    Registered
Activities

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2023 - Current Going Places - Unsuspicious Biomes as Sources of Innovative Biomolecules. (2022.12620.BD)
Co-supervisor of Inês Oliveira Costa
 PhD in Biosciences (PhD)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2023 - Current Analysis of the resistome of the microbial communities present on macroplastics from the Portuguese coast (2022.10874.BD).
Supervisor of Cátia Filipa Gaspar Verissímo Costa;
 PhD in Biosciences (PhD)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2021 - Current Microbiome-based approaches to induce host resistance based on Pine Pitch canker experimental system (ref. 2021.06400.BD)
Supervisor of Frederico Tiago Leitão
 PhD in Biosciences (PhD)
Universidade de Coimbra, Portugal
2020 - Current Effect of anthropogenic pollution on bacterial integron’s dynamics in aquatic systems (SFRH/BD/145147/2019).
Supervisor of Rafael Tavares
 PhD in Biosciences (PhD)
Universidade de Coimbra, Portugal
2018 - Current Role of metals in antibiotic resistance selection in aquatic systems.
Supervisor of Patrícia Matos
 PhD in Biology (PhD)
Universidade de Aveiro, Portugal
2020 - 2024 Analysis of microplastics¿ microbiome: role in antibiotic resistance spread (SFRH/BD/144902/2019)
Supervisor of Isabel Silva
 PhD in Biosciences (PhD)
Universidade de Coimbra, Portugal
2022 - 2023 Microplastics in rivers and their role in the spread of pathogens and antibiotic resistance.
Supervisor of Inês Alçada e Silva
 MSc in Biochemistry (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2022 - 2023 Application of filamentous fungi for sustainable resourse utilization in space habitats.
Co-supervisor of Inês Pereira de Figueiredo
 MSc in Biochemistry (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2022 - 2023 Involvement of Horizontal Gene Transfer Mechanisms In Antibiotic Resistance Aquisition in Acinetobacter baumanii.
Co-supervisor
 MSc in Celular and Molecular Biology (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2017 - 2022 Enterobacteriaceae as mediators for carbapenem resistance transfer between environmental and human settings
Supervisor of Pedro teixeira
 PhD in Biology and Ecology of Global Changes (PhD)
Universidade de Aveiro, Portugal
2017 - 2022 Effects of nanomaterials on the bacterial community from agricultural soils: nano-agrochemicals and biosolids’ applications
Supervisor of Sara Peixoto
 PhD in Biology and Ecology of Global Changes (PhD)
Universidade de Aveiro, Portugal
2016 - 2022 Novel approaches on the characterization of the wastewater resistome: possible implications on human health and water quality management
Co-supervisor of Jaqueline Rocha
 PhD in Biotechnology (PhD)
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2020 - 2021 Antibiotic resistance and virulence associated to Vibrio spp..
Supervisor of Inês Filipa Cavaleiro
 MSc in Biochemistry (Master)
Universidade de Coimbra, Portugal
2020 - 2021 Fatores Imunogénicos para avaliação de risco de infeção por SARS-CoV-2
Co-supervisor of Rita Marques
 MSc in Biochemistry (Master)
Universidade de Coimbra, Portugal
2016 - 2021 Long term consequences of chemical exposure in zebrafish and potential role of the associated microbiome in the observed toxicity
Supervisor of Ana Rita Almeida
 PhD in Biology and Ecology of Global Changes (PhD)
Universidade de Aveiro, Portugal
2014 - 2021 Emergence and dissemination of antibiotic resistance in the environment: origin of resistance genes and role of human activities.
Supervisor of Susana Araújo
 PhD in Biology and Ecology of Global Changes (PhD)
Universidade de Aveiro, Portugal
2019 - 2020 Resistance to antibiotics in estuarine bacteria potentially pathogenic of fish and other aquatic animals.
Supervisor of Joana Dias
 Master in Biochemistry (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2019 - 2020 Rivers as routes for the spread of antibiotic resistance: Role of Anthropogenic Pressures and Risks to Human Health
Supervisor of José Laço
 MSc in Biochemistry (Master)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2019 - 2020 Antibiotic Resistance in Urban Lakes
Co-supervisor of Nuno Pinto
 MSc in Microbiology (Master)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2018 - 2019 Study of the anaerobic biodegradability of kraft pulp bleaching effluents.
Co-supervisor of Rita Santos
 MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2018 - 2019 Comparative genomic analysis of the Ensifer genus provides insights into the adaptations to cave environments.
Co-supervisor of Bernardo Silva
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2017 - 2019 Development of laser-induced graphene impedimetric biosensors for Escherichia coli detection.
Co-supervisor of Ana Moreira
 MSc in Physical Engineering (Master)
Universidade de Aveiro, Portugal
2017 - 2019 Virulence, Survival and Integron-mediated antibiotic resistance in the water compartment: Exploring several aspects that may jeopardize public health
Supervisor of Rafael Tavares
 MSc in Microbiology (Master)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2017 - 2019 Microbiome of the rhizosphere of Pinus: impact of Fusarium infection and phosphite amendement
Supervisor of Frederico Leitão
 MSc in Microbiology (Master)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2017 - 2018 Role of non-antibiotic contaminants in antibiotic resistance selection in aquatic systems.
Supervisor of Isabel Alexandre Teixeira da Silva
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2017 - 2018 Bioinoculantes e biochar na promoção do crescimento de plantas em solos de minas.
Co-supervisor of Mariana Godinho
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2017 - 2018 Are wastewaters discharges shaping the environmental antibiotic resistome - a metagenomic analysis of bacterial communities from riverine ecosystems
Supervisor of Marta Tacão
 Post Doc (Other)
Universidade de Aveiro, Portugal
2014 - 2018 Studying the role of bacterial communities on Pine Wilt Disease development
Supervisor of Marta Salgueiro Alves
 PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2014 - 2018 Meta-analysis in aerobic granular sludge bioreactors for wastewater treatment
Supervisor of Catarina Amorim
 Post Doc
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2016 - 2017 Microbial community in houses from patients with chronic respiratory diseases in Estarreja.
Supervisor of Tatiana Silva
 MSC in Molecular and Cellular Biology (Master)
Universidade de Aveiro, Portugal
2016 - 2017 Molecular characterization of multi-drug resistant clinical isolates.
Supervisor of Diana Salvador
 MSc in Molecular and Cellular Biology (Master)
Universidade de Aveiro, Portugal
2013 - 2017 Endophytic bacterial communities of salt marsh plants from Hg-contaminated sites
Co-supervisor of Cátia Isabel Assis Fidalgo
 PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2015 - 2016 Genome wide analysis of antibiotic and metal resistance in Pseudomonas.
Supervisor of Pedro Teixeira
 MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2015 - 2016 The microbiome of Pinus pinaster.
Co-supervisor of Helena Lopes
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2015 - 2015 Genomic and lipidomic characterization of multidrug resistant bacteria found in pressure ulcers and diabetic foot infections
Supervisor of Cláudia Simões
 Post Doc
Universidade de Aveiro, Portugal
2014 - 2015 Bacterial communities and antibiotic resistance genes in hospital effluents and municipal wastewaters of Aveiro
Co-supervisor of Ana Coito
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2014 - 2015 Sources of Antibiotic Resistance in the Environment.
Supervisor of Maria Vendas
 MSc in Molecular and Cellular Biology (Master)
Universidade de Aveiro, Portugal
2009 - 2015 The resistome of Aeromonas salmonicida unraveled by proteomics
Co-supervisor of Nádia Osório
 PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2008 - 2014 Resistance to last-resort antibiotics in natural environments
Co-supervisor of Marta Cristina Martins Oliveira Tacão
 PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2012 - 2013 Antibiotic Resistance in Escherichia coli isolates from different sources.
Supervisor of Marta Salgueiro Alves
 MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2012 - 2012 Identification of faecal pollution sources in the Berlenga Island
Supervisor of Susana Araújo
 MSc in Applied Biology (Master)
Universidade de Aveiro, Portugal
2011 - 2012 Phenotypical tests to detect antibiotic resistance genes.
Co-supervisor of Ana Rodrigues
 MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2011 - 2012 The soil microbiome: influence of the phytosanitary condition of the cork oak.
Co-supervisor of Diogo Pinho
 MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2007 - 2012 Phylogenetic and functional diversity of estuarine bacterioneuston along a salinity gradient
Co-supervisor of Juliana Nina Azevedo
 PhD in Biology (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2010 - 2011 Mercury effect on plant-associated microbial communities.
Co-supervisor of Edna Almeida
 MSc in Biotechnology (Master)
Universidade de Aveiro, Portugal
2009 - 2010 ESBL in Enterobacteriaceae at the hospital Póvoa de Varzim/Vila do Conde, Portugal.
Supervisor of Cristina Sá
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2008 - 2009 Study on serological markers of the hepatitis B virus on a blood donors population.
Co-supervisor of Cristina Carvalho
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2008 - 2009 Epidemiological study on Chagas disease prevalence in blood donors.
Co-supervisor of Sandra Neto
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2008 - 2009 Prevalence of urinary infections and susceptibility to antibiotics of uropathogens.
Co-supervisor of Carlos Correia
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2008 - 2009 The culturable bacterial community of the sea surface microlayer.
Supervisor of Isabel Ramos
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2007 - 2008 Development and validation of culture-independent methodologies to assess diversity and dynamics of Aeromonas communities.
Supervisor of Vera Calhau
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal
2007 - 2008 Cloning and expression of a putative collagenase of Aeromonas hydrophila.
Co-supervisor of Eliana Cavaleiro
 MSc in Microbiology (Master)
Universidade de Aveiro, Portugal

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2023 Biochemical and structural studies of a novel glucosamine kinase and a unique glycosyltransferase: new antimicrobial opportunities in actinobacterial glycobiology.
(Thesis) Arguer
 Daniela Cristina Nunes Costa (PhD)
Universidade de Coimbra, Portugal
2023 Metagenomic assessment of trophic networks for a sustainable conservation of Cabo Verde seabirds.
(Thesis) Arguer
 Ana Rita Tomé Carreiro (PhD)
Universidade de Coimbra, Portugal
2023 Decrypting the Diversity of Microbiome in Aquaculture
(Thesis) Main arguer
 Vanessa Salgueiro (PhD)
Universidade Nova de Lisboa Unidade de Ensino e Investigação em Saúde Pública Global, Portugal
2023 Environmental integrons, new insights from natural microbial communities.
(Thesis) Main arguer
 Eva Sandoval Quintana (PhD)
Université de Pau et des Pays de l¿Adour Collège STEE Sciences et Technologies pour l¿Energie et l¿Environnement, France
2023 Unraveling the contribution of environmental stressors to the selection of multidrug-resistant bacteria: focus on the poultry production chain.
(Thesis) Main arguer
 Andreia Carina Martins Rebelo Gonçalves (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2023 Exploring the Microbial Diversity of Portuguese Saltern Environments
(Thesis) Main arguer
 Andreia Carina Martins Rebelo Gonçalves (PhD)
Universidade do Porto, Portugal
2022 Effects of nanomaterials on the bacterial community from agricultural soils: nano-agrochemicals and biosolids’ applications.
Supervisor
 Sara Peixoto (PhD)
Universidade de Aveiro, Portugal
2022 Enterobacteriaceae as mediators for carbapenem resistance transfer between environmental and human settings.
Supervisor
 Pedro Filipe Teixeira (PhD)
Universidade de Aveiro, Portugal
2022 Doutoramento em Ciencias Mariñas, Tecnoloxía e Xestión Effect of increasing nutrient inputs on the taxonomic composition of prokaryote plankton from the Ría de Vigo and the adjacent shelf.
(Thesis) Main arguer
 Alberto Gutiérrez Barral; (PhD)
Universidade de Vigo, Spain
2022 Ocorrência de bacilos gram-negativos produtores de betalactamases de espectro estendido nas águas da baía de Guanabara, RJ, Brasil, ao longo de 12 meses.
(Thesis) Main arguer
 Wellington Felipe da Costa (PhD)
2022 Algae and cyanobacteria biodeterioration within the UNESCO World Heritage site ‘University of Coimbra – Alta and Sofia’: Assessment of natural biocides as novel control strategies.
(Thesis) Arguer
 Fabiana Vanessa Almeida Soares (PhD)
Universidade de Coimbra, Portugal
2021 Long term consequences of chemical exposure in zebrafish and potential role of the associated microbiome in the observed toxicity.
Supervisor
 Ana Rita Almeida (PhD)
Universidade de Aveiro, Portugal
2021 Classification and identification of thermophilic organisms isolated from São Pedro do Sul hot spring and revision of the classification of genus meiothermus: integration of genomics into prokaryotic taxonomy.
(Thesis) Arguer
 Luciana Costa de Albuquerque Pinto (PhD)
Universidade de Coimbra, Portugal
2021 Optimizing the scale up biochemical platform biorefinery for lactic acid production from lignocellulosic biomass.
(Thesis) Arguer
 Ana Rita Pontes Pereira (PhD)
Universidade de Coimbra, Portugal
2021 The role of fungi on monumental stone biodeterioration within the UNESCO World Heritage site "University of Coimbra - Alta and Sofia"
(Thesis) Arguer
 João Trovão Lima Simões Antunes (PhD)
Universidade de Coimbra, Portugal
2021 Emergence and dissemination of antibiotic resistance in the environment: origin of resistance genes and role of human activities.
Supervisor
 Susana Manso Araújo (PhD)
Universidade de Aveiro, Portugal
2020 ongINg_nano: long term and multIgeNerational effects of nanomaterials in terrestrial invertebrates
(Thesis) Arguer
 Rita Carina Saraiva Silva Bicho (PhD)
Universidade de Aveiro Departamento de Biologia, Portugal
2020 An investigation of the presence of antibiotic resistance determinants and resistant bacteria in the Norwegian environment by examination of sludge from water treatment plants.
(Thesis) Main arguer
 Ingvild Falkum Ullmann; (PhD)
OsloMet - storbyuniversitetet, Norway
2019 Fluoroquinolone antibiotics in the environment: biodegradation stdies and presence in several environmental matrices
(Thesis) Main arguer
 Alexandra Maia (PhD)
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2019 Carbapenemase producers of Pseudomonas aeruginosa: lights on new mobile genetic elements.
(Thesis) Main arguer
 João Francisco Botelho (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2018 Studying the role of bacterial communities on Pine Wilt Disease development
Supervisor
 Marta Salgueiro Alves (PhD)
Universidade de Aveiro, Portugal
2016 Extending the knowledge on drivers of intrinsic and aquired resistance to cephalosporinsand quinolones in Enterobacteriaceae
(Thesis) Main arguer
 Teresa Ribeiro (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 Assessing antibiotic resistance in Gram negative bacteria from animals and the wider environment.
(Thesis) Main arguer
 Daniela Jones Dias (PhD)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2016 The role of uncommon bacteria in catheter-associated urinary tract infections
(Thesis) Main arguer
 Andreia Mateus Azevedo (PhD)
Universidade do Porto Faculdade de Engenharia, Portugal
2016 Contribution of biocides to the selection of Salmonella non-typhoid resistant to antibiotics: a multilayerd approach.
(Thesis) Main arguer
 Joana Mourão (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 Tracking antibiotic Resistance from hospital effluents to the surrounding environment.
(Thesis) Main arguer
 Ana Rita varela (PhD)
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2014 Tolerância a biocidas e dispersão de resistência a antibióticos: uma abordagem fenotípica e molecular em Enterococcus spp. De diferentes origens.
(Thesis) Main arguer
 Maria Eduarda Silveira (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2014 Brazilian savanna forest: conservation, medicinal reservoir and bioprospecting.
(Thesis) Main arguer
 Nelita Gonçalves de Bessa (PhD)
Universidade de Aveiro, Portugal
2012 Resistência ao tributilestanho (TBT) em Aeromonas molluscorum Av27
(Thesis) Main arguer
 Andreia Henriques Cruz (PhD)
Universidade de Aveiro, Portugal
2012 Salubridade microbiológica dos bivalves - relevância na segurança alimentar
(Thesis) Arguer
 Jacinta Oliveira (PhD)
Universidade de Aveiro, Portugal
2012 Phylogenetic and functional diversity of estuarine bacterioneuston along a salinity gradient
Supervisor
 Juliana Nina Azevedo (PhD)
Universidade de Aveiro, Portugal
2011 Molecular diversity and transferability of integrons from wastewaters.
(Thesis) Arguer
 Alexandra Moura (PhD)
Universidade de Aveiro, Portugal
2010 ISCR and their association with antibiotic resistance genes
(Thesis) Main arguer
 Sónia Ferreira (PhD)
Universidade de Aveiro, Portugal

Committee member

Activity description
Role 		Institution / Organization
2021 - Current Member of the Scientific Committee of the 17th Annual Meeting of the Portuguese Association for Evolutionary Biology (XVII ENBE), 16th-17th December 2021, Online. (https://enbe2021.rd.ciencias.ulisboa.pt/about-us)
Member
 Universidade de Lisboa, Portugal
2018/10/10 - 2018/10/12 Member of the Scientific Committee of the XENOWAC II Conference, held in Limassol, Cyprus (http://www.xenowac2018.com/)
Member
 University of Cyprus, Cyprus
2015 - 2018 Coordinator of the Biology Department Scientific Comittee for the implementation of “Centro de Ciência Viva de Vouzela” in cooperation with Câmara Municipal de Vouzela and Fábrica Ciência Viva
Coordinator
 Universidade de Aveiro, Portugal
2014 - 2018 Member substitute of the Management Committee of the COST action ES1403 “NEREUS-new and emerging challenges and opportunities in wastewater reuse”. http://www.cost.eu/domains_actions/essem/Actions/ ES1403?parties
Member
 European Union, Belgium
2017/11 - 2017/11 Member of the Scientific Committee of the 1st International Congress on Biochemistry and Microbiology Applied Technologies [BMAT-2017], Hammamet, Tunisia. Euro-African Association of Environnement (AEAE), Tunisia
2012 - 2013 Member of the COST action TD0803 “DARE–Detecting Antibiotic Resistance in Europe”. http://www.cost-dare.eu/
Member
 European Union, Belgium

Evaluation committee

Activity description
Role 		Institution / Organization Funding entity
2023 - Current Internal Expert Reviewer of the Research Foundation – Flanders (FWO; https://www.fwo.be/en/); panel MED3PROJECTS - Immunology and Microbiology;
Evaluator
 Research Foundation – Flanders (FWO), Belgium Research Foundation – Flanders (FWO)
2023 - 2023 Reviewer of research proposals for the European Science Foundation - A*MIDEX International Research and Training (Structuring of international research-training projects; https://www.univ-amu.fr). European Science Foundation, France European Science Foundation
2022 - 2022 Reviewer of research proposals for the National Science Centre (Poland; https://www.ncn.gov.pl/en) under the Call OPUS2022. Narodowe Centrum Nauki, Poland Narodowe Centrum Nauki
2022 - 2022 Reviewer of research proposals for the Rovaltain Foundation (Valence, França; https://fcsrovaltain.org/), under the programme Environmental Toxicology and Ecotoxicology Rovaltain Foundation, France Rovaltain Foundation
2021 - 2021 Reviewer of research proposals for The Research Foundation – Flanders (FWO; https://www.fwo.be/en/); FWO Call for Fundamental Research Projects 2021 Research Foundation – Flanders (FWO), Belgium Research Foundation – Flanders (FWO)
2020 - 2020 Reviewer of research proposals for the Deutsche Forschungsgemeinschaft (German Research Foundation; www.dfg.de/en/index.jsp). Deutsche Forschungsgemeinschaft, Germany Deutsche Forschungsgemeinschaft
2018 - 2018 Reviewer of research grant applications for the Biotechnology and Biological Sciences Research Council (BBSRC) of the UK (www.nerc.ac.uk) in the 2018 call. Biotechnology and Biological Sciences Research Council, United Kingdom Biotechnology and Biological Sciences Research Council
2017 - 2017 Reviewer of research grant applications for the Welcome Trust/DBT India Alliance (http://www.wellcomedbt.org/). Wellcome Trust DBT India Alliance, India Wellcome Trust DBT India Alliance
2016 - 2016 Reviewer of research proposals within the Bilateral Cooperation (Programme for Cooperation in Science between Portugal and Poland) - FCT (Fundação para a Ciência e a Tecnologia). Fundação para a Ciência e a Tecnologia, Portugal Fundação para a Ciência e a Tecnologia
2016 - 2016 Reviewer of research grant applications for the Natural Environment Research Council of the UK (www.nerc.ac.uk) in the call titled ‘Antimicrobial Resistance in the Real World’. Natural Environment Research Council, United Kingdom Natural Environment Research Council
2015 - 2015 Reviewer of research proposals within the programme “Luso-German Integrated Actions” organized by CRUP (Conselho de Reitores das Universidades Portuguesas). Conselho de Reitores das Universidades Portuguesas, Portugal Conselho de Reitores das Universidades Portuguesas
2015 - 2015 Reviewer of research proposals within the programme “Luso-French Integrated Actions” organized by CRUP (Conselho de Reitores das Universidades Portuguesas). Conselho de Reitores das Universidades Portuguesas, Portugal Conselho de Reitores das Universidades Portuguesas
2014 - 2014 Reviewer of research grant applications for the European Society of Clinical Microbiology and Infectious Diseases (https://www.escmid.org/profession_career/ awards_grants/ research _ grants /reviewers/). European Society of Clinical Microbiology and Infectious Diseases, Switzerland European Society of Clinical Microbiology and Infectious Diseases

Journal scientific committee

Journal title (ISSN) Publisher
2023 - Current Antibiotics MDPI
2021 - Current Frontiers in Microbiology (1664-302X) Frontiers Media SA
2020 - Current Genes MDPI
2016 - Current BMC Genomics (1471-2164) Springer (Biomed Central Ltd.)
Distinctions

Other distinction

2012 Scholarship "Special Visiting Researcher"
2008 IUMS meeting attendance grant