Luísa Peixe (731C-0B6D-8F44)

Curriculum Vitae

Luísa Peixe

Luísa Peixe, PharmD. MSc, PhD., Professor, holds the ESCMID Fellowship. and is Vice-Director of the Applied Molecular Biosciences Unit (UCIBIO). She is the leader and founder of the BACT_DRUGS research lab at UCIBIO. Dr. Peixe obtained her pharmaceutical degree from University of Lisboa, Lisboa, Portugal, and obtained a M.S. equivalent degree in Microbiology and a Ph.D. in Microbiology, University of Porto with a thesis in antimicrobial resistance area developed in Hosp. Ramón y Cajal, Madrid and Laboratory of Microbiology of FFUP. She has been teaching Bacteriology, Antimicrobial Agents and Antimicrobial Resistance and is co-author of ¿COMMON EUROPEAN CURRICULUM FOR DEGREES IN HEALTH SCIENCES¿ of FEMS (Federation of European Microbiology Societies). Dr. Peixe is a nationally and internationally recognized expert conducting basic, translational and clinical research on mechanisms, evolution and transmission of antibiotic resistance, within a One Health approach. Her expertise also includes the clinical impact of resistance and molecular epidemiology of antibiotic-resistant organisms, using FT-IR spectroscopy and state-of-the-art genomic analyses. More recently, she is also interested in the role of urobiome in health and disease, as well as reservoirs of antimicrobial resistance, allowing to enlarge the expertise of her group in methodologies to capture bacterial diversity (e.g. culturomic and amplicon sequencing) and in bacterial taxonomy. Dr. Peixe is an expert of Biohazard Panel of EFSA (European Food Safety Authority) and of the Qualitative Presumption of Safety working group of EFSA, member of scientific advisory board of Joint Program Initiative for Antimicrobial Resistance (JPIAMR) and has served as reviewer for different funding agencies (e.g. FP7-European Commission; Horizon 2020; Swiss National Science Foundation). She participated in the EMA (European Medicines Agency) working groups for the criteria to designate antimicrobials or groups of antimicrobials reserved for treatment of certain infections in human and for the list of antibiotics restricted to human use. She has been active in professional societies including the ESCMID (European Society for Clinical Microbiology and Infectious Diseases), where she acted as Director of the ESCMID Summer School in 2009, Chair of ¿Food and Water Borne Diseases Study Group¿ or in the Program Planning Committee of ECCMID. She participated also in the Program planning committee of ASM Microbe (2017), IMMEM (2019) and in Microbiotec. She is a frequent invited speaker at national and international meetings. Dr. Peixe has been involved in editorial board of scientific journals (e.g. Antimicrobial Agents and Chemotherapy, Clinical Microbiology and Infection (2005-2010), Scientific Reports, Microbial Drug Resistance) and is a frequent reviewer for most relevant journals in the field of antimicrobial resistance. She is also the coordinator of MicroMundo@UP and SAFE-Porto, citizen science projects for improving antimicrobial resistance awareness. Dr. Peixe research has greatly contributed to elucidate the role of different settings to the AMR burden, to the characterization of new antibiotic resistance mechanisms, and relevant mobile genetic platforms carrying resistance determinants. Their group also contributed to improve the diagnosis and control of resistant bacteria, through the development of Blue-Carba test, allowing the rapid detection of carbapenemase (recommended by Latin America reference WHO lab), and typing by FT-IR spectroscopy. Her group described already several new bacterial species, demonstrating a larger bacterial urobiome diversity than previously described. Dr. Peixe holds a national and international patent and recently received the award ¿Prémios Maratona da Saúde-2022¿. Her research has resulted more than 200 original manuscripts in international peer-review journals.

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Identificação

Identificação pessoal

Nome completo: Luísa Peixe

Nomes de citação

Peixe, L
Peixe LV
Luísa Vieira Peixe
Luísa Maria Vieira Peixe

Identificadores de autor

Ciência ID: 731C-0B6D-8F44
ORCID iD: 0000-0001-5810-8215
Researcher Id: 6603892851

Endereços de correio eletrónico

lpeixe@gmail.com (Profissional)
lpeixe@ff.up.pt (Profissional)

Telefones

Telefone

220428580 (Profissional)

Moradas

Lab. de Microbiologia. Faculdade de Farmácia. Universidade Porto. Edificio 3, Piso 5, Sala 27. Rua Jorge Viterbo Ferreira, 228, 4050-313, Porto, Porto, Portugal (Profissional)

Websites

https://www.requimte.pt/ucibio/research-groups/lab/bactdrugs (Profissional)
https://sigarra.up.pt/ffup/pt/func_geral.formview?p_codigo=213069 (Académico)

Domínios de atuação

Ciências Médicas e da Saúde - Ciências da Saúde - Doenças Infeciosas
Ciências Médicas e da Saúde - Ciências da Saúde - Epidemiologia
Ciências Médicas e da Saúde - Ciências da Saúde - Saúde Pública e Saúde Ambiental
Ciências Naturais - Ciências Biológicas - Microbiologia
Ciências Agrárias - Ciências Veterinárias

Idiomas

Idioma	Conversação	Leitura	Escrita	Compreensão
Espanhol; Castelhano	Utilizador independente (B1)	Utilizador independente (B1)	Utilizador elementar (A1)	Utilizador independente (B1)
Francês	Utilizador independente (B1)	Utilizador proficiente (C1)	Utilizador elementar (A1)	Utilizador independente (B1)
Inglês	Utilizador independente (B1)	Utilizador independente (B1)	Utilizador independente (B1)	Utilizador independente (B1)
Português	Utilizador proficiente (C1)	Utilizador proficiente (C1)	Utilizador proficiente (C1)	Utilizador proficiente (C1)

Formação

	Grau	Classificação
2005 Concluído	Integrated Cycle of Studies in Pharmaceutical Sciences (Título de Agregado) Universidade do Porto Faculdade de Farmácia, Portugal "N/A" (TESE/DISSERTAÇÃO)	Aprovado por Unanimidade
1996 Concluído	Microbiology (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal "Characterization of plasmidic extended spectrum b-lactamases in E. coli" (TESE/DISSERTAÇÃO)	Aprovado com distinção e louvor por unanimidade (m
1996 Concluído	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal "Caracterização de Beta-lactamases Plasmidicas Ampliado em Escherichia Coli" (TESE/DISSERTAÇÃO)
1991 Concluído	Prova Pedagógica e de Capacidade Científica (Outros) Especialização em Microbiologia Universidade do Porto Faculdade de Farmácia, Portugal	Muito Bom
1987 Concluído	Pharmaceutical Sciences (Licenciatura) Universidade de Lisboa Faculdade de Farmácia, Portugal "N/A" (TESE/DISSERTAÇÃO)	Fourteen (14) values

Percurso profissional

Ciência

	Categoria Profissional Instituição de acolhimento	Empregador
2015 - 2022	Investigador Coordenador (carreira) (Investigação)	REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal

2004 - 2014	Investigador Coordenador (carreira) (Investigação)	Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Docência no Ensino Superior

	Categoria Profissional Instituição de acolhimento	Empregador
2006/03/01 - Atual	Professor Associado (Docente Universitário)	Universidade do Porto Faculdade de Farmácia, Portugal

1996/05/01 - 2006/02/28	Professor Auxiliar (Docente Universitário)	Universidade do Porto Faculdade de Farmácia, Portugal

1991/03/01 - 1996/04/30	Assistente (Docente Universitário)	Universidade do Porto Faculdade de Farmácia, Portugal

1987/01/01 - 1991/02/28	Assistente Estagiário (Docente Universitário)	Universidade do Porto Faculdade de Farmácia, Portugal

Projetos

Bolsa

	Designação	Financiadores
2022/01/01 - 2023/06/30	Exploring the bacteriocinome of human Enterococcus faecium paving avenues towards multidrug-resistant infections targeted therapies. 2022-2023. Referência: EXPL/SAU-INF/0261/2021	Fundação para a Ciência e a Tecnologia Em curso
2022/01 - 2023/06	Exploring the bacteriocinome of human Enterococcus faecium paving avenues towards multidrug-resistant infections targeted therapies. 2022-2023. Referência: EXPL/SAU-INF/0261/2021	Fundação para a Ciência e a Tecnologia
2019/12 - 2020/12	IR Bactyping – A bacterial type identification service to support epidemiology and infection control in real time BIP PROOF 2019 Investigador Universidade do Porto Faculdade de Farmácia, Portugal Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Universidade do Porto Em curso
2018 - 2019	Enterobacteriaceae multirresistentes: avaliação de um programa de vigilância e controlo implementado num hospital terciário universitário https://www.gis.pt/Geral/paginas.aspx?cod=146 Investigador Universidade do Porto Faculdade de Farmácia, Portugal	Grupo de Infecção e Sepsis Concluído
2015 - 2016	Discrimination of Salmonella non-typhoid high-risk clones by high- throughput spectroscopic techniques (MALDI-TOF and FTIR-ATR) EFWISG Research Grant #8168 Investigador responsável REQUIMTE, Portugal	European Society of Clinical Microbiology and Infectious Diseases Concluído
2014/03 - 2015/08	Optimization of MALDI-TOF MS for the assessment of bacterial cell viability towards a potential application in food industry EXPL/DTP-SAP/1797/2013 Investigador REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2013 - 2014	Identification of the risk factors promoting the emergence of Enterococcus faecium at the interphase between humans, foodborne animals and the environment ESCMID Grant 2013 Investigador Universidade do Porto Faculdade de Farmácia, Portugal REQUIMTE, Portugal	European Society of Clinical Microbiology and Infectious Diseases Concluído
2012/10 - 2013/12	The threat of multidrug resistance bacteria to public health: when aquacultures raise more than fish PP_IJUP2011-81 Investigador responsável Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Fundação para a Ciência e a Tecnologia Banco Santander Totta Concluído
2012 - 2013	Validation and optimization of high-througput methods (MALDI-TOF, FT-IR) to identify and track Escherichia coli clinically relevant clones ESCMID Research Grant 2012 Investigador Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	European Society of Clinical Microbiology and Infectious Diseases Concluído
2012 - 2013	Virulence and resistance features of Acinetobacter genetic lineages associated with biofilm-based urinary catheter-related infections ESGB Investigador responsável REQUIMTE, Portugal Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	European Society of Clinical Microbiology and Infectious Diseases Concluído
2012 - 2013	Evaluation of adhesion and biofilm-producing abilities of worldwide spread E. coli uropathogenic clonal complexes IJUP Investigador Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Fundação para a Ciência e a Tecnologia Banco Santander Totta Concluído
2010/06/01 - 2012	Characterization of widespread uropathogenic multidrug resistant Escherichia coli clones by using a combined approach of conventional genotypic methods and high-throughput technology FP7-PEOPLE-2009-IEF call / Ref 255512 / ECOCHAR Orientador	European Commission Concluído

Projeto

	Designação	Financiadores
2021 - Atual	Exploring the bacteriocinome of human Enterococcus faecium paving avenues towards multidrug-resistant infections targeted therapies Fundação para a Ciência e a Tecnologia Outra
2013 - Atual	Strategic Project - LA 6 - 2013-2014 PEst-C/EQB/LA0006/2013 Investigador REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Fundação para a Ciência e a Tecnologia Em curso
2023/07 - 2025/01	Low-cost rapid diagnostics and typing for clinical microbiology using FTIR INV-060596 Co-Investigador Responsável (Co-IR) Universidade do Porto Faculdade de Farmácia, Portugal	Bill & Melinda Gates Foundation Global Health Division Em curso
2020/10/01 - 2023/09/30	HEALTH UNORTE - HEALTH-UNORTE: Setting-up biobanks and regenerative medicine strategies to boost research in cardiovascular, musculoskeletal, neurological, oncological, immunological and infectious diseases NORTE-01-0145-FEDER-000039 Investigador Universidade do Porto Faculdade de Farmácia, Portugal	Em curso
2020/09/01 - 2023/08/31	AgriFood XXI - Desenvolvimento e consolidação da investigação do setor agro-alimentar no Norte de Portugal NORTE-01-0145-FEDER-000041 Investigador	Em curso
2021 - 2021	SAFE (Superbug Awareness for Education) 210809 Investigador	EIT Health Em curso
2019/06 - 2020/06	SafestPoultry - SafestPoultry: understanding the impact of organic versus inorganic zinc and copper formulas use at farm level in the safe of marketed poultry-meat IJUP - SafestPoultry Investigador Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal Universidade do Porto Faculdade de Farmácia, Portugal	Universidade do Porto Em curso
2019/01 - 2019/12	MicroMundo @ Uporto: an educational service-learning project for education in Microbiology N/A Investigador Universidade do Porto Faculdade de Farmácia, Portugal Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal	Universidade do Porto Concluído
2016/11 - 2019/10	Development of a novel industrial process for safe, sustainable and higher quality foods, using biotechnology and cybernetic approach ERA-IB-2/0002/2015 Investigador responsável Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2016/04 - 2019/04	DESignBIOtecHealth - New Technologies for three Health Challenges of Modern Societies: Diabetes, Drug Abuse and Kidney Diseases Norte-01-0145-FEDER-000024 Investigador Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Comissao de Coordenacao e Desenvolvimento Regional do Norte Concluído
2016/04 - 2019/04	FOODnanoHEALTH - Qualidade e Segurança Alimentar – uma abordagem (nano)tecnológica NORTE-01-0145-FEDER-000011 Investigador Universidade do Porto Faculdade de Ciências, Portugal	Comissao de Coordenacao e Desenvolvimento Regional do Norte Concluído
2018/02 - 2019/01	Evaluation of production or processing control practices on the microbiological quality and safety of poultry meat with focus on Salmonella PP-IJUP2017-SOJA DE PORTUGAL-27 Investigador Universidade do Porto Faculdade de Farmácia, Portugal Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal	Universidade do Porto Concluído
2013/01 - 2015/06	Chelators for novel therapeutic strategies NORTE-07-0124-FEDER-000066 Investigador Universidade do Porto Faculdade de Farmácia, Portugal	Comissao de Coordenacao e Desenvolvimento Regional do Norte Concluído
2012/10 - 2013/12	Selection of antibiotic resistance bacteria: a role for mercury? PP_IJUP2011-71 Investigador Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2012/09 - 2013/12	Resistance to biocides in Salmonella from Portugal: a multilayered approach IJUP_2012_1 Investigador Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal	Universidade do Porto Banco Santander Totta Concluído
2010 - 2013/06	Is aquaculture raising more than fish? Detecting antimicrobial resistance in an understudied ecological niche PTDC/AAC-AMB/103386/2008 Investigador responsável Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2012 - 2013	Validation and optimization of MALDI-TOF for identification and tracking of clinically relevant Escherichia coli clones and antibiotic resistance mechanisms: a translational approach EXPL/DTP-EPI/0196/2012 Investigador Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2011/01 - 2012/12	Genotypic and high-troughput methodologies for tracing the emerging pathogen Escherichia alberti PPII_ALBERTI Investigador responsável Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Universidade do Porto Concluído
2011/01 - 2012/12	Bacterial resistance to copper and antibiotics: two sides of the same problem in the anumal prodduction PPII_Bacterial Investigador Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Universidade do Porto Concluído
2010/01 - 2011/12	Molecular and phenotypic characteristics of the emerging Salmonella enterica serotype 4,5,12:i- (monophasic variant of S.Typhimurium) from Portugal PP-IJUP-2010-17 Investigador Universidade do Porto Faculdade de Farmácia, Portugal Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal	Universidade do Porto Banco Santander Totta Concluído
2009/09 - 2010/12	Structure of Salmonella nontyphoidal causing human infections by multilocus sequence typing PPII_SALMONELLA Investigador Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Universidade do Porto Concluído
2009/01 - 2010/12	Are ready-to-eat salads an important vehicle of pathogenic and comensal bactéria resistant to antibiotics? salads Investigador Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Universidade do Porto Concluído
2005/09 - 2008/06	Indicators of swine industry pollution: antibiotics and antibiotic-resistant bacteria POCI/AMB/61814/2004 Investigador responsável Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2005/07 - 2007/12	Study of the factors implicated in the stability and dissemination of multi-resistant Enterococcus spp in different metagenomes POCI/SAU-ESP/61385/2004 Investigador responsável Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2005/01 - 2006/12	Ecology and molecular evolution of horizontal mobile elements implicated in the antibiotic resistance in the community and hospital environment from Portugal and Spain 68891 Investigador responsável Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Universidade do Porto Concluído
2001 - 2002	Indicadores biológicos de contaminação por águas residuais hospitalares POCTI/ESP/39885/2001 Investigador Universidade do Porto Faculdade de Farmácia, Portugal	Fundação para a Ciência e a Tecnologia Concluído

Produções

Publicações

Artigo em jornal	Rebelo, Andreia; Duarte, Bárbara; Carolina Ferreira; Mourão, Joana; Sofia Ribeiro; Freitas, Ana R; Coque, Teresa M; et al. "Enterococcus spp. from chicken meat collected 20 years apart overcome multiple stresses occurring in the poultry production chain: Antibiotics, copper and acids", Int J Food Microbiol ., 2023, https://www.sciencedirect.com/science/article/pii/S0168160522004536?via%3Dihub. EFSA Panel on Biological Hazards (BIOHAZ); Koutsoumanis, Kostas; Peixe LV. "Evaluation of a multi-step catalytic co-processing hydrotreatment for the production of renewable fuels using Category 3 animal fat and used cooking oils.", EFSA J., 2022, doi: 10.2903/j.efsa.2022.7591. EFSA Panel on Biological Hazards (BIOHAZ); Koutsoumanis, Konstantinos; Peixe, Luísa; et al. "Transmission of antimicrobial resistance (AMR) during animal transport", EFSA Journal, 2022, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9593722/.
Artigo em revista	Joana Mourão; Marisa Ribeiro-Almeida; Carla Novais; Mafalda Magalhães; Andreia Rebelo; Sofia Ribeiro; Luísa Peixe; et al. "From Farm to Fork: Persistence of Clinically Relevant Multidrug-Resistant and Copper-Tolerant Klebsiella pneumoniae Long after Colistin Withdrawal in Poultry Production". Microbiology Spectrum (2023): https://doi.org/10.1128/spectrum.01386-23. 10.1128/spectrum.01386-23 Carla Rodrigues; Val F. Lanza; Luísa Peixe; Teresa M. Coque; Ângela Novais; Ruth M. Hall. "Phylogenomics of Globally Spread Clonal Groups 14 and 15 of Klebsiella pneumoniae". Microbiology Spectrum (2023): https://doi.org/10.1128/spectrum.03395-22. 10.1128/spectrum.03395-22 João Pedro Rueda Furlan; Teresa Gonçalves Ribeiro; Ângela Novais; Hamilton Cabral; Luísa Peixe; Eliana Guedes Stehling. "Citrobacter meridianamericanus sp. nov., isolated from a soil sample". International Journal of Systematic and Evolutionary Microbiology (2023): https://doi.org/10.1099/ijsem.0.005720. 10.1099/ijsem.0.005720 Elisabete Alves Cappelli; Magdalena Ksiezarek; Jacqueline Wolf; Meina Neumann-Schaal; Teresa Gonçalves Ribeiro; Luísa Peixe. "Expanding the Bacterial Diversity of the Female Urinary Microbiome: Description of Eight New Corynebacterium Species". Microorganisms (2023): https://doi.org/10.3390/microorganisms11020388. 10.3390/microorganisms11020388 Miguel Peixoto de Almeida; Carla Rodrigues; Ângela Novais; Filipa Grosso; Nicolae Leopold; Luísa Peixe; Ricardo Franco; Eulália Pereira. "Silver Nanostar-Based SERS for the Discrimination of Clinically Relevant Acinetobacter baumannii and Klebsiella pneumoniae Species and Clones". Biosensors (2023): https://doi.org/10.3390/bios13020149. 10.3390/bios13020149 Luísa Peixe; Carla Novais; Ana C. Almeida-Santos; Ana Paula Pereira; Andreia Rebelo; Ana R. Freitas. "Alert for molecular data interpretation when using Enterococcus faecium reference strains reclassified as Enterococcus lactis". Gene 851 (2023): 146951-146951. http://dx.doi.org/10.1016/j.gene.2022.146951. 10.1016/j.gene.2022.146951 Mireya Viviana Belloso Daza; Ana C. Almeida-Santos; Carla Novais; Antónia Read; Valquíria Alves; Pier Sandro Cocconcelli; Ana R. Freitas; Luísa Peixe. "Distinction between Enterococcus faecium and Enterococcus lactis by a gluP PCR-Based Assay for Accurate Identification and Diagnostics". Microbiology Spectrum (2022): https://doi.org/10.1128/spectrum.03268-22. 10.1128/spectrum.03268-22 Svetlana Ugarcina Perovic; Magdalena Ksiezarek; Joana Rocha; Elisabete Alves Cappelli; Márcia Sousa; Teresa Gonçalves Ribeiro; Filipa Grosso; Luísa Peixe. Autor correspondente: Luísa Peixe. "Urinary Microbiome of Reproductive-Age Asymptomatic European Women". Microbiology Spectrum (2022): https://doi.org/10.1128/spectrum.01308-22. 10.1128/spectrum.01308-22 Marisa Ribeiro-Almeida; Joana Mourão; Ângela Novais; Sofia Pereira; Joana Freitas-Silva; Sofia Ribeiro; Paulo Martins da Costa; Luísa Peixe; Patrícia Antunes. "High diversity of pathogenic Escherichia coli clones carrying mcr-1 among gulls underlines the need for strategies at the environment–livestock–human interface". Environmental Microbiology 24 10 (2022): 4702-4713. http://dx.doi.org/10.1111/1462-2920.16111. 10.1111/1462-2920.16111 Furlan, J.P.R.; Eliana Guedes Stehling; Eduardo Angelino Savazzi; Luísa Peixe; Ângela Novais. "High occurrence of colistin- and multidrug-resistant strains carrying mcr-1 or an underestimated mcr-1.26 allelic variant along a large Brazilian river". Journal of Global Antimicrobial Resistance 30 (2022): 127-129. http://dx.doi.org/10.1016/j.jgar.2022.05.030. 10.1016/j.jgar.2022.05.030 Ana P. Pereira; Patrícia Antunes; Rob Willems; Jukka Corander; Teresa M. Coque; Luísa Peixe; Ana R. Freitas; Carla Novais. "Evolution of Chlorhexidine Susceptibility and of the EfrEF Operon among Enterococcus faecalis from Diverse Environments, Clones, and Time Spans". Microbiology Spectrum 10 4 (2022): http://dx.doi.org/10.1128/spectrum.01176-22. 10.1128/spectrum.01176-22 Inês Martins-Oliveira; Blanca Pérez Viso; Ana Silva-Dias; Rosário Gomes; Luísa Peixe; Ângela Novais; Rafael Canton; Cidália Pina-Vaz. "Rapid Detection of Plasmid AmpC Beta-Lactamases by a Flow Cytometry Assay". Antibiotics 11 8 (2022): 1130-1130. http://dx.doi.org/10.3390/antibiotics11081130. 10.3390/antibiotics11081130 Magdalena Ksiezarek; Filipa Grosso; Teresa Gonçalves Ribeiro; Luísa Peixe. Autor correspondente: Luísa Peixe. "Genomic diversity of genus Limosilactobacillus". Microbial Genomics (2022): https://doi.org/10.1099/mgen.0.000847. 10.1099/mgen.0.000847 Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Update of the list of QPS-recommended microbiological agents intentionally added to food or feed as notified to EFSA 16: suitability of taxonomic units notified to EFSA until March 2022". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7408. 10.2903/j.efsa.2022.7408 Claude Lambré; José Manuel Barat Baviera; Claudia Bolognesi; Andrew Chesson; Pier Sandro Cocconcelli; Riccardo Crebelli; David Michael Gott; et al. "Evaluation of the safety and efficacy of lactic acid to reduce microbiological surface contamination on carcases from kangaroos, wild pigs, goats and sheep". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7265. 10.2903/j.efsa.2022.7265 Ana R. Freitas; Ana P. Tedim; Ana Almeida Santos; Bárbara Duarte; Houyem Elghaieb; Mohamed Salah Abbassi; Abdennaceur Hassen; Carla Novais; Luísa Peixe. "High-Resolution Genotyping Unveils Identical Ampicillin-Resistant Enterococcus faecium Strains in Different Sources and Countries: A One Health Approach". Microorganisms (2022): https://www.mdpi.com/2076-2607/10/3/632. 10.3390/microorganisms10030632 Konstantinos Koutsoumanis; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Alessandra De Cesare; et al. "The efficacy and safety of high-pressure processing of food". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7128. 10.2903/j.efsa.2022.7128 Ângela Novais; Rita Veiga Ferraz; Mariana Viana; Paula Martins da Costa; Luísa Peixe. "NDM-1 Introduction in Portugal through a ST11 KL105 Klebsiella pneumoniae Widespread in Europe". Antibiotics (2022): https://doi.org/10.3390/antibiotics11010092. 10.3390/antibiotics11010092 Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 15: suitability of taxonomic units notified to EFSA until September 2021". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7045. 10.2903/j.efsa.2022.7045 Magdalena Ksiezarek; Ângela Novais; Luísa Peixe. "The Darkest Place Is under the Candlestick-Healthy Urogenital Tract as a Source of Worldwide Disseminated Extraintestinal Pathogenic Escherichia coli Lineages". Microorganisms (2021): https://doi.org/10.3390/microorganisms10010027. 10.3390/microorganisms10010027 Sofia Ribeiro; Joana Mourão; Ângela Novais; Joana Campos; Luísa Peixe; Patrícia Antunes. "From farm to fork: Colistin voluntary withdrawal in Portuguese farms reflected in decreasing occurrence of mcr-1- carrying Enterobacteriaceae from chicken meat". Environmental Microbiology (2021): https://doi.org/10.1111/1462-2920.15689. 10.1111/1462-2920.15689 Konstantinos Koutsoumanis; Ana Allende; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Alessandra De Cesare; et al. "Inactivation of indicator microorganisms and biological hazards by standard and/or alternative processing methods in Category 2 and 3 animal by-products and derived products to be used as organic fertilisers and/or soil improvers". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6932. 10.2903/j.efsa.2021.6932 Finisterra, Liliana; Duarte, Bárbara; Peixe, Luísa; Novais, Carla; Freitas, Ana R.. "Industrial dog food is a vehicle of multidrug-resistant enterococci carrying virulence genes often linked to human infections". International Journal of Food Microbiology 358 (2021): 109284. http://dx.doi.org/10.1016/j.ijfoodmicro.2021.109284. 10.1016/j.ijfoodmicro.2021.109284 Ana C. Almeida-Santos; Carla Novais; Luísa Peixe; Ana R. Freitas. "Enterococcus spp. as a Producer and Target of Bacteriocins: A Double-Edged Sword in the Antimicrobial Resistance Crisis Context". Antibiotics 10 10 (2021): 1215-1215. https://doi.org/10.3390/antibiotics10101215. 10.3390/antibiotics10101215 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed.¿Part 10: Quinolones: flumequine and oxolinic acid". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6862. 10.2903/j.efsa.2021.6862 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed.¿Part 3: Amprolium". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6854. 10.2903/j.efsa.2021.6854 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed.¿Part 6: Macrolides: tilmicosin, tylosin and tylvalosin". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6858. 10.2903/j.efsa.2021.6858 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed.¿Part 4: ß-Lactams: amoxicillin and penicillin V". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6855. 10.2903/j.efsa.2021.6855 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 7: Amphenicols: florfenicol and thiamphenicol". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6859. 10.2903/j.efsa.2021.6859 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 11: Sulfonamides". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6863. 10.2903/j.efsa.2021.6863 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 12: Tetracyclines: tetracycline, chlortetracycline, oxytetracycline, and doxycycline". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6864. 10.2903/j.efsa.2021.6864 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 1: Methodology, general data gaps and uncertainties". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6852. 10.2903/j.efsa.2021.6852 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 8: Pleuromutilins: tiamulin and valnemulin". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6860. 10.2903/j.efsa.2021.6860 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 13: Diaminopyrimidines: trimethoprim". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6865. 10.2903/j.efsa.2021.6865 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 5: Lincosamides: lincomycin". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6856. 10.2903/j.efsa.2021.6856 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed.¿Part 9: Polymyxins: colistin". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6861. 10.2903/j.efsa.2021.6861 Ana Allende; Konstantinos Koutsoumanis; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed.¿Part 2: Aminoglycosides/aminocyclitols: apramycin, paromomycin, neomycin and spectinomycin". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6853. 10.2903/j.efsa.2021.6853 Rebelo, Andreia; Mourão, Joana; Freitas, Ana R.; Duarte, Bárbara; Silveira, Eduarda; Sanchez-Valenzuela, Antonio; Almeida, Agostinho; et al. "Diversity of metal and antibiotic resistance genes in Enterococcus spp. from the last century reflects multiple pollution and genetic exchange among phyla from overlapping ecosystems". Science of The Total Environment 787 (2021): 147548. http://dx.doi.org/10.1016/j.scitotenv.2021.147548. 10.1016/j.scitotenv.2021.147548 Tedim, Ana P; Lanza, Val F; Rodríguez, Concepción M; Freitas, Ana R; Novais, Carla; Peixe, Luísa; Baquero, Fernando; Coque, Teresa M. "Fitness cost of vancomycin-resistant Enterococcus faecium plasmids associated with hospital infection outbreaks". Journal of Antimicrobial Chemotherapy 76 11 (2021): 2757-2764. http://dx.doi.org/10.1093/jac/dkab249. 10.1093/jac/dkab249 Freitas, Ana R.; Finisterra, Liliana; Tedim, Ana P.; Duarte, Bárbara; Novais, Carla; Peixe, Luísa. "Linezolid- and Multidrug-Resistant Enterococci in Raw Commercial Dog Food, Europe, 2019–2020". Emerging Infectious Diseases 27 8 (2021): 2221-2224. http://dx.doi.org/10.3201/eid2708.204933. 10.3201/eid2708.204933 Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 14: suitability of taxonomic units notified to EFSA until March 2021". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6689. 10.2903/j.efsa.2021.6689 Konstantinos Koutsoumanis; Ana Allende; Avelino Álvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Role played by the environment in the emergence and spread of antimicrobial resistance (AMR) through the food chain". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6651. 10.2903/j.efsa.2021.6651 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Guidance on date marking and related food information: part 2 (food information)". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6510. 10.2903/j.efsa.2021.6510 Konstantinos Koutsoumanis; Ana Allende; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Alessandra De Cesare; et al. "Evaluation of the application for new alternative biodiesel production process for rendered fat including Category 1 animal by-products (BDI-RepCat® process, AT)". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6511. 10.2903/j.efsa.2021.6511 Pöntinen, Anna K.; Top, Janetta; Arredondo-Alonso, Sergio; Tonkin-Hill, Gerry; Freitas, Ana R.; Novais, Carla; Gladstone, Rebecca A.; et al. "Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era". Nature Communications 12 1 (2021): http://dx.doi.org/10.1038/s41467-021-21749-5. 10.1038/s41467-021-21749-5 Ksiezarek, Magdalena; Ribeiro, Teresa Gonçalves; Rocha, Joana; Grosso, Filipa; Perovic, Svetlana Ugarcina; Peixe, Luisa. "Limosilactobacillus urinaemulieris sp. nov. and Limosilactobacillus portuensis sp. nov. isolated from urine of healthy women". International Journal of Systematic and Evolutionary Microbiology (2021): http://dx.doi.org/10.1099/ijsem.0.004726. Publicado • 10.1099/ijsem.0.004726 Ksiezarek, Magdalena; Ugarcina-Perovic, Svetlana; Rocha, Joana; Grosso, Filipa; Peixe, Luísa. "Long-term stability of the urogenital microbiota of asymptomatic European women". BMC Microbiology 21 1 (2021): http://dx.doi.org/10.1186/s12866-021-02123-3. Publicado • 10.1186/s12866-021-02123-3 Antunes, Patrícia; Novais, Carla; Novais, Ângela; Grosso, Filipa; Ribeiro, Teresa G; Mourão, Joana; Perovic, Svetlana; et al. "MicroMundo@UPorto: an experimental microbiology project fostering student's antimicrobial resistance awareness and personal and social development". FEMS Microbiology Letters (2021): http://dx.doi.org/10.1093/femsle/fnab016. Publicado • 10.1093/femsle/fnab016 Freitas, Ana R.; Pereira, Ana P.; Novais, Carla; Peixe, Luísa. "Multidrug-resistant high-risk Enterococcus faecium clones: can we really define them?". International Journal of Antimicrobial Agents 57 1 (2021): 106227. http://dx.doi.org/10.1016/j.ijantimicag.2020.106227. Publicado • 10.1016/j.ijantimicag.2020.106227 Koutsoumanis, Kostas; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies, Robert; et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 13: suitability of taxonomic units notified to EFSA until September 2020". EFSA Journal 19 1 (2021): http://dx.doi.org/10.2903/j.efsa.2021.6377. Publicado • 10.2903/j.efsa.2021.6377 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Marianne Chemaly; Robert Davies; Alessandra De Cesare; et al. "The use of the so-called ‘superchilling’ technique for the transport of fresh fishery products". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6378. 10.2903/j.efsa.2021.6378 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Guidance on date marking and related food information: part 1 (date marking)". EFSA Journal (2020): https://data.europa.eu/doi/10.2903/j.efsa.2020.6306. 10.2903/j.efsa.2020.6306 Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Evaluation of public and animal health risks in case of a delayed post-mortem inspection in ungulates". EFSA Journal (2020): https://data.europa.eu/doi/10.2903/j.efsa.2020.6307. 10.2903/j.efsa.2020.6307 Guerra, Ana Margarida; Lira, Agostinho; Lameirão, Angelina; Selaru, Aurélia; Abreu, Gabriela; Lopes, Paulo; Mota, Margarida; Novais, Ângela; Peixe, Luísa. "Multiplicity of Carbapenemase-Producers Three Years after a KPC-3-Producing K. pneumoniae ST147-K64 Hospital Outbreak". Antibiotics 9 11 (2020): 806. http://dx.doi.org/10.3390/antibiotics9110806. Publicado • 10.3390/antibiotics9110806 Silva, Liliana; Grosso, Filipa; Rodrigues, Carla; Ksiezarek, Magdalena; Ramos, Helena; Peixe, Luísa. "The success of particular Acinetobacter baumannii clones: accumulating resistance and virulence inside a sugary shield". Journal of Antimicrobial Chemotherapy 76 2 (2020): 305-311. http://dx.doi.org/10.1093/jac/dkaa453. 10.1093/jac/dkaa453 Konstantinos Koutsoumanis; Ana Allende; Declan Joseph Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Alessandra De Cesare; et al. "Potential BSE risk posed by the use of ruminant collagen and gelatine in feed for non-ruminant farmed animals". EFSA Journal (2020): https://data.europa.eu/doi/10.2903/j.efsa.2020.6267. 10.2903/j.efsa.2020.6267 Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, Luísa; Novais, Carla; Antunes, Patrícia. "Atypical Non-H2S-Producing Monophasic Salmonella Typhimurium ST3478 Strains from Chicken Meat at Processing Stage Are Adapted to Diverse Stresses". Pathogens 9 9 (2020): 701. http://dx.doi.org/10.3390/pathogens9090701. 10.3390/pathogens9090701 Botelho, João; Mourão, Joana; Roberts, Adam P.; Peixe, Luísa. "Comprehensive genome data analysis establishes a triple whammy of carbapenemases, ICEs and multiple clinically relevant bacteria". Microbial Genomics (2020): http://dx.doi.org/10.1099/mgen.0.000424. 10.1099/mgen.0.000424 Ribeiro, Teresa Gonçalves; Izdebski, Radoslaw; Urbanowicz, Pawel; Carmeli, Yehuda; Gniadkowski, Marek; Peixe, Luísa. "Citrobacter telavivum sp. nov. with chromosomal mcr-9 from hospitalized patients". European Journal of Clinical Microbiology & Infectious Diseases (2020): http://dx.doi.org/10.1007/s10096-020-04003-6. 10.1007/s10096-020-04003-6 Koutsoumanis, Konstantinos; Allende, Ana; Bolton, Declan Joseph; Bover-Cid, Sara; Chemaly, Marianne; Davies, Robert; De Cesare, Alessandra; et al. "Evaluation of Alternative Methods of Tunnel Composting (submitted by the European Composting Network)". EFSA Journal 18 8 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6226. 10.2903/j.efsa.2020.6226 Silva, Liliana; Rodrigues, Carla; Lira, Agostinho; Leão, Mariana; Mota, Margarida; Lopes, Paulo; Novais, Ângela; Peixe, Luísa. "Fourier transform infrared (FT-IR) spectroscopy typing: a real-time analysis of an outbreak by carbapenem-resistant Klebsiella pneumoniae". European Journal of Clinical Microbiology & Infectious Diseases (2020): http://dx.doi.org/10.1007/s10096-020-03956-y. 10.1007/s10096-020-03956-y Freitas, Ana R; Tedim, Ana P; Duarte, Bárbara; Elghaieb, Houyem; Abbassi, Mohamed S; Hassen, Abdennaceur; Read, Antónia; et al. "Linezolid-resistant (Tn6246::fexB-poxtA) Enterococcus faecium strains colonizing humans and bovines on different continents: similarity without epidemiological link". Journal of Antimicrobial Chemotherapy 75 9 (2020): 2416-2423. http://dx.doi.org/10.1093/jac/dkaa227. 10.1093/jac/dkaa227 Koutsoumanis, Kostas; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies, Robert; et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 12: suitability of taxonomic units notified to EFSA until March 2020". EFSA Journal 18 7 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6174. 10.2903/j.efsa.2020.6174 Ribeiro, Teresa Gonçalves; Rocha, Joana; Ksiezarek, Magdalena; Perovic, Svetlana Ugarcina; Grosso, Filipa; Peixe, Luísa. "The status of the species Lactobacillus fornicalis Dicks et al. 2000. Request for an opinion". International Journal of Systematic and Evolutionary Microbiology 70 6 (2020): 3953-3954. http://dx.doi.org/10.1099/ijsem.0.004259. 10.1099/ijsem.0.004259 Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, Luísa; Novais, Carla; Antunes, Patrícia. "Tolerance to arsenic contaminant among multidrug-resistant and copper-tolerant Salmonella successful clones is associated with diverse ars operons and genetic contexts". Environmental Microbiology 22 7 (2020): 2829-2842. http://dx.doi.org/10.1111/1462-2920.15016. 10.1111/1462-2920.15016 Gonçalves Ribeiro, Teresa; Novais, Ângela; Machado, Elisabete; Peixe, Luísa. "Acquired AmpC ß-Lactamases among Enterobacteriaceae from Healthy Humans and Animals, Food, Aquatic and Trout Aquaculture Environments in Portugal". Pathogens 9 4 (2020): 273. http://dx.doi.org/10.3390/pathogens9040273. 10.3390/pathogens9040273 Koutsoumanis, Konstantinos; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies, Robert; De Cesare, Alessandra; et al. "The public health risk posed by Listeria monocytogenes in frozen fruit and vegetables including herbs, blanched during processing". EFSA Journal 18 4 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6092. 10.2903/j.efsa.2020.6092 Koutsoumanis, Konstantinos; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Chemaly, Marianne; Davies, Robert; De Cesare, Alessandra; et al. "The use of the so-called ‘tubs’ for transporting and storing fresh fishery products". EFSA Journal 18 4 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6091. 10.2903/j.efsa.2020.6091 Koutsoumanis, Konstantinos; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Davies, Robert; De Cesare, Alessandra; et al. "Update and review of control options for Campylobacter in broilers at primary production". EFSA Journal 18 4 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6090. 10.2903/j.efsa.2020.6090 Koutsoumanis, Konstantinos; Allende, Ana; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies, Robert; De Cesare, Alessandra; et al. "Evaluation of an alternative method for production of biodiesel from processed fats derived from Category 1, 2 and 3 animal by-products (submitted by College Proteins)". EFSA Journal 18 4 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6089. 10.2903/j.efsa.2020.6089 Rodrigues, Carla; Sousa, Clara; Lopes, João A.; Novais, Ângela; Peixe, Luísa. "A Front Line on Klebsiella pneumoniae Capsular Polysaccharide Knowledge: Fourier Transform Infrared Spectroscopy as an Accurate and Fast Typing Tool". mSystems 5 2 (2020): http://dx.doi.org/10.1128/msystems.00386-19. 10.1128/msystems.00386-19 Freitas, Ana R.; Tedim, Ana P.; Novais, Carla; Lanza, Val F.; Peixe, Luísa. "Comparative genomics of global optrA-carrying Enterococcus faecalis uncovers a common chromosomal hotspot for optrA acquisition within a diversity of core and accessory genomes". Microbial Genomics (2020): http://dx.doi.org/10.1099/mgen.0.000350. 10.1099/mgen.0.000350 Rocha, Joana; Botelho, João; Ksiezarek, Magdalena; Perovic, Svetlana Ugarcina; Machado, Miguel; Carriço, João André; Pimentel, Lígia L.; et al. "Lactobacillus mulieris sp. nov., a new species of Lactobacillus delbrueckii group". International Journal of Systematic and Evolutionary Microbiology 70 3 (2020): 1522-1527. http://dx.doi.org/10.1099/ijsem.0.003901. 10.1099/ijsem.0.003901 de Oliveira, Emília S.; Freitas, Ana R.; Peixe, Luísa; Novais, Carla; Melo, M. Celeste. "Silent clonal spread of vancomycin-resistant Enterococcus faecalis ST6 and ST525 colonizing patients at hospital admission in Natal, Brazil". Infection Control & Hospital Epidemiology (2020): 1-3. http://dx.doi.org/10.1017/ice.2020.24. 10.1017/ice.2020.24 Loras, Cristina; Mendes, Ana Constança; Peixe, Luisa; Novais, Ângela; Alós, Juan-Ignacio. "Escherichia coli resistant to fosfomycin from urinary tract infections: Detection of the fosA3 gene in Spain". Journal of Global Antimicrobial Resistance (2020): http://dx.doi.org/10.1016/j.jgar.2020.01.023. 10.1016/j.jgar.2020.01.023 Koutsoumanis, Kostas; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies, Robert; et al. 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International Journal of Food Microbiology 285 (2018): 34-41. http://dx.doi.org/10.1016/j.ijfoodmicro.2018.07.005. 10.1016/j.ijfoodmicro.2018.07.005 Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Lieve Herman; et al. "Hazard analysis approaches for certain small retail establishments and food donations: second scientific opinion". EFSA Journal (2018): https://data.europa.eu/doi/10.2903/j.efsa.2018.5432. 10.2903/j.efsa.2018.5432 Bender, Jennifer K.; Cattoir, Vincent; Hegstad, Kristin; Sadowy, Ewa; Coque, Teresa M.; Westh, Henrik; Hammerum, Anette M.; et al. "Update on prevalence and mechanisms of resistance to linezolid, tigecycline and daptomycin in enterococci in Europe: Towards a common nomenclature". 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"Atypical epidemiology of CTX-M-15 among Enterobacteriaceae from a high diversity of non-clinical niches in Angola". Journal of Antimicrobial Chemotherapy 71 5 (2016): 1169-1173. http://www.scopus.com/inward/record.url?eid=2-s2.0-84965079948&partnerID=MN8TOARS. 10.1093/jac/dkv489 Antunes, P.; Mourão, J.; Campos, J.; Peixe, L.. "Salmonellosis: The role of poultry meat". Clinical Microbiology and Infection 22 2 (2016): 110-121. http://www.scopus.com/inward/record.url?eid=2-s2.0-84960485415&partnerID=MN8TOARS. 10.1016/j.cmi.2015.12.004 Peixe, L. "KPC-3-Producing Klebsiella pneumoniae in Portugal Linked to Previously Circulating Non-CG258 Lineages and Uncommon Genetic Platforms (Tn4401d-IncFIA and Tn4401d-IncN).". Frontiers in Microbiology (2016): http://europepmc.org/abstract/med/27446040. 10.3389/fmicb.2016.01000 Peixe, L. "Co-diversification of Enterococcus faecium Core Genomes and PBP5: Evidences of pbp5 Horizontal Transfer.". Frontiers in microbiology (2016): http://europepmc.org/abstract/med/27766095. Rodrigues, Carla; Machado, Elisabete; Pires, João; Ramos, Helena; Novais, Ângela; Peixe, Luísa; Peixe, L. "Increase of widespread A, B1 and D Escherichia coli clones producing a high diversity of CTX-M-types in a Portuguese hospital". Future Microbiology 10 7 (2015): 1125-1131. http://dx.doi.org/10.2217/fmb.15.38. 10.2217/fmb.15.38 Gheorghe I; Novais Â; Grosso F; Rodrigues C; Chifiriuc MC; Lazar V; Peixe L. "Snapshot on carbapenemase-producing Pseudomonas aeruginosa and Acinetobacter baumannii in Bucharest hospitals reveals unusual clones and novel genetic surroundings for blaOXA-23.". (2015): http://europepmc.org/abstract/med/25630639. 10.1093/jac/dku527 Campos J; Gil J; Mourão J; Peixe L; Antunes P. "Ready-to-eat street-vended food as a potential vehicle of bacterial pathogens and antimicrobial resistance: An exploratory study in Porto region, Portugal.". (2015): http://europepmc.org/abstract/med/25910073. 10.1016/j.ijfoodmicro.2015.04.016 Branquinho R; Klein G; Kämpfer P; Peixe LV. "The status of the species Bacillus aerophilus and Bacillus stratosphericus. Request for an Opinion.". (2015): http://europepmc.org/abstract/med/25479956. 10.1099/ijs.0.000004 Mourão J; Novais C; Machado J; Peixe L; Antunes P. "Metal tolerance in emerging clinically relevant multidrug-resistant Salmonella enterica serotype 4,[5],12:i:- clones circulating in Europe.". (2015): http://europepmc.org/abstract/med/25816978. 10.1016/j.ijantimicag.2015.01.013 Silveira, Eduarda; Marques, Patrice; Freitas, Ana R.; Mourão, Joana; Coque, Teresa M.; Antunes, Patrícia; Peixe, Luísa; Novais, Carla. "A hospital sewage ST17 Enterococcus faecium with a transferable Inc18-like plasmid carrying genes coding for resistance to antibiotics and quaternary ammonium compounds (qacZ)". Journal of Global Antimicrobial Resistance 3 1 (2015): 49-51. http://dx.doi.org/10.1016/j.jgar.2014.11.005. 10.1016/j.jgar.2014.11.005 Martins, E.; Novais, C.; Freitas, A.R.; Dias, A.R.; Ribeiro, T.G.; Antunes, P.; Peixe, L.. "Filling the map for antimicrobial resistance in sub-Saharan Africa: Ampicillin-resistant Enterococcus from non-clinical sources in Angola". Journal of Antimicrobial Chemotherapy 70 10 (2015): 2914-2916. http://www.scopus.com/inward/record.url?eid=2-s2.0-84943775182&partnerID=MN8TOARS. 10.1093/jac/dkv172 Novais, A.; Brilhante, M.; Pires, J.; Peixe, L.. "Evaluation of the recently launched rapid carb blue kit for detection of carbapenemase-producing gram-negative bacteria". Journal of Clinical Microbiology 53 9 (2015): 3105-3107. http://www.scopus.com/inward/record.url?eid=2-s2.0-84940062681&partnerID=MN8TOARS. 10.1128/JCM.01170-15 Ribeiro, T.G.; Novais, A.; Branquinho, R.; Machado, E.; Peixe, L.. "Phylogeny and comparative genomics unveil independent diversification trajectories of qnrB and genetic platforms within particular Citrobacter species". Antimicrobial Agents and Chemotherapy 59 10 (2015): 5951-5958. http://www.scopus.com/inward/record.url?eid=2-s2.0-84942291913&partnerID=MN8TOARS. 10.1128/AAC.00027-15 Grosso, F.; Silva, L.; Sousa, C.; Ramos, H.; Quinteira, S.; Peixe, L.. "Extending the reservoir of bla IMP-5: The emerging pathogen Acinetobacter bereziniae". Future Microbiology 10 10 (2015): 1609-1613. http://www.scopus.com/inward/record.url?eid=2-s2.0-84945292993&partnerID=MN8TOARS. 10.2217/fmb.15.88 Peixe, L. "Unsuitability of MALDI-TOF MS to discriminate Acinetobacter baumannii clones under our routine experimental conditions". Frontiers in Microbiology (2015): 10.3389/fmicb.2015.00481 Branquinho R; Meirinhos-Soares L; Carriço JA; Pintado M; Peixe LV. "Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones.". (2014): http://europepmc.org/abstract/med/25230950. 10.1111/1574-6941.12426 Peixe, L. "Characterization of a new genetic environment associated with GES-6 carbapenemase from a Pseudomonas aeruginosa isolate belonging to the high-risk clone ST235". Journal of Antimicrobial Chemotherapy 2014 (2014): http://jac.oxfordjournals.org/cgi/content/full/dku391? ijkey=PpEqovsM6di3j7k&keytype=ref. 10.1093/jac/dku391 Branquinho, R.; Sousa, C.; Osorio, H.; Meirinhos-Soares, L.; Lopes, J.; Carrico, J. A.; Busse, H.-J.; et al. "Bacillus invictae sp. nov., isolated from a health product". INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 64 Pt 11 (2014): 3867-3876. http://dx.doi.org/10.1099/ijs.0.067850-0. 10.1099/ijs.0.067850-0 Rodrigues C; Machado E; Ramos H; Peixe L; Novais A. "Expansion of ESBL-producing Klebsiella pneumoniae in hospitalized patients: A successful story of international clones (ST15, ST147, ST336) and epidemic plasmids (IncR, IncFIIK).". (2014): http://europepmc.org/abstract/med/25190354. 10.1016/j.ijmm.2014.08.003 Sousa C; Silva L; Grosso F; Nemec A; Lopes J; Peixe L. "Discrimination of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex species by Fourier transform infrared spectroscopy.". (2014): http://europepmc.org/abstract/med/24563251. 10.1007/s10096-014-2078-y Novais Â; Sousa C; de Dios Caballero J; Fernandez-Olmos A; Lopes J; Ramos H; Coque TM; Cantón R; Peixe L. "MALDI-TOF mass spectrometry as a tool for the discrimination of high-risk Escherichia coli clones from phylogenetic groups B2 (ST131) and D (ST69, ST405, ST393).". (2014): http://europepmc.org/abstract/med/24599708. 10.1007/s10096-014-2071-5 Sousa C; Botelho J; Silva L; Grosso F; Nemec A; Lopes J; Peixe L. "MALDI-TOF MS and chemometric based identification of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex species.". (2014): http://europepmc.org/abstract/med/24877727. 10.1016/j.ijmm.2014.04.014 Mourão J; Machado J; Novais C; Antunes P; Peixe L. "Characterization of the emerging clinically-relevant multidrug-resistant Salmonella enterica serotype 4,[5],12:i:- (monophasic variant of S. Typhimurium) clones.". (2014): http://europepmc.org/abstract/med/25022446. 10.1007/s10096-014-2180-1 Barros M; Branquinho R; Grosso F; Peixe L; Novais C. "Linezolid-Resistant Staphylococcus epidermidis, Portugal, 2012.". (2014): http://europepmc.org/abstract/med/24751182. 10.3201/eid2005.130783 Silveira E; Freitas AR; Antunes P; Barros M; Campos J; Coque TM; Peixe L; Novais C. "Co-transfer of resistance to high concentrations of copper and first-line antibiotics among Enterococcus from different origins (humans, animals, the environment and foods) and clonal lineages.". (2014): http://europepmc.org/abstract/med/24343895. 10.1093/jac/dkt479 Freitas F; Machado E; Ribeiro TG; Novais Â; Peixe L. "Long-term dissemination of acquired AmpC ß-lactamases among Klebsiella spp. and Escherichia coli in Portuguese clinical settings.". (2014): http://europepmc.org/abstract/med/24096741. 10.1007/s10096-013-1983-9 Sousa C; Silva L; Grosso F; Lopes J; Peixe L. "Development of a FTIR-ATR based model for typing clinically relevant Acinetobacter baumannii clones belonging to ST98, ST103, ST208 and ST218.". (2014): http://europepmc.org/abstract/med/24727403. 10.1016/j.jphotobiol.2014.02.015 Rodrigues C; Novais Â; Machado E; Peixe L. "Detection of VIM-34, a novel VIM-1 variant identified in the intercontinental ST15 Klebsiella pneumoniae clone.". (2014): http://europepmc.org/abstract/med/23934739. 10.1093/jac/dkt314 Gomes-Neves, E.; Antunes, P.; Manageiro, V.; Gärtner, F.; Caniça, M.; da Costa, J.M.C.; Peixe, L.. "Clinically relevant multidrug resistant Salmonella enterica in swine and meat handlers at the abattoir". Veterinary Microbiology 168 1 (2014): 229-233. http://www.scopus.com/inward/record.url?eid=2-s2.0-84890793290&partnerID=MN8TOARS. 10.1016/j.vetmic.2013.10.017 Branquinho R; Sousa C; Lopes J; Pintado ME; Peixe LV; Osório H. "Differentiation of Bacillus pumilus and Bacillus safensis using MALDI-TOF-MS.". (2014): http://europepmc.org/abstract/med/25314655. 10.1371/journal.pone.0110127 Rocha J; Coelho FJ; Peixe L; Gomes NC; Calado R. "Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools.". (2014): http://europepmc.org/abstract/med/25384534. 10.1038/srep06986 Branquinho, Raquel; Sousa, Clara; Osório, Hugo; Meirinhos-Soares, Luís; Lopes, João; Carriço, João A.; Busse, Hans-Jurgen; et al. "Bacillus invictae sp. nov., isolated from a health Product". (2014): http://hdl.handle.net/10400.14/17543. 10.1099/ijs.0.067850-0 Branquinho, R.; Sousa, C.; Lopes, J.; Pintado, M.E.; Peixe, L.V.. "Correction: Differentiation of Bacillus pumilus and Bacillus safensis using MALDI-TOF-MS". PLoS ONE 9 12 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84919764883&partnerID=MN8TOARS. 10.1371/journal.pone.0116426 Pires J; Novais A; Peixe L. "Blue-carba, an easy biochemical test for detection of diverse carbapenemase producers directly from bacterial cultures.". (2013): http://europepmc.org/abstract/med/24108615. 10.1128/JCM.01634-13 Rodrigues C; Machado E; Peixe L; Novais A. "IncI1/ST3 and IncN/ST1 plasmids drive the spread of blaTEM-52 and blaCTX-M-1/-32 in diverse Escherichia coli clones from different piggeries.". (2013): http://europepmc.org/abstract/med/23719233. 10.1093/jac/dkt187 Novais, C.; Freitas, A.R.; Silveira, E.; Antunes, P.; Silva, R.; Coque, T.M.; Peixe, L.. "Spread of multidrug-resistant enterococcus to animals and humans: An underestimated role for the pig farm environment". Journal of Antimicrobial Chemotherapy 68 12 (2013): 2746-2754. http://www.scopus.com/inward/record.url?eid=2-s2.0-84887534043&partnerID=MN8TOARS. 10.1093/jac/dkt289 Sousa, C.; Novais, Â.; Magalhães, A.; Lopes, J.; Peixe, L.. "Diverse high-risk B2 and D Escherichia coli clones depicted by Fourier Transform Infrared Spectroscopy". Scientific Reports 3 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84888265708&partnerID=MN8TOARS. 10.1038/srep03278 Campos, J.; Mourão, J.; Pestana, N.; Peixe, L.; Novais, C.; Antunes, P.. "Microbiological quality of ready-to-eat salads: An underestimated vehicle of bacteria and clinically relevant antibiotic resistance genes". International Journal of Food Microbiology 166 3 (2013): 464-470. http://www.scopus.com/inward/record.url?eid=2-s2.0-84884469629&partnerID=MN8TOARS. 10.1016/j.ijfoodmicro.2013.08.005 Machado, E.; Coque, T.M.; Cantón, R.; Sousa, J.C.; Peixe, L.. "Commensal Enterobacteriaceae as reservoirs of extended-spectrum beta-lactamases, integrons, and sul genes in Portugal". Frontiers in Microbiology 4 APR (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84884258701&partnerID=MN8TOARS. 10.3389/fmicb.2013.00080 Liebana, E.; Carattoli, A.; Coque, T.M.; Hasman, H.; Magiorakos, A.-P.; Mevius, D.; Peixe, L.; et al. "Public health risks of enterobacterial isolates producing extended-spectrum ß-lactamases or AmpC ß-lactamases in food and food-producing animals: An EU perspective of epidemiology, analytical methods, risk factors, and control options". Clinical Infectious Diseases 56 7 (2013): 1030-1037. http://www.scopus.com/inward/record.url?eid=2-s2.0-84875029941&partnerID=MN8TOARS. 10.1093/cid/cis1043 Novais, Â.; Vuotto, C.; Pires, J.; Montenegro, C.; Donelli, G.; Coque, T.M.; Peixe, L.. "Diversity and biofilm-production ability among isolates of Escherichia coli phylogroup D belonging to ST69, ST393 and ST405 clonal groups". BMC Microbiology 13 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84879096132&partnerID=MN8TOARS. 10.1186/1471-2180-13-144 Antunes, P.; Mourão, J.; Alves, T.; Campos, J.; Novais, C.; Novais, Â.; Peixe, L.. "Salmonella enterica serotype Bovismorbificans, a new host for CTX-M-9". International Journal of Antimicrobial Agents 41 1 (2013): 91-93. http://www.scopus.com/inward/record.url?eid=2-s2.0-84871652073&partnerID=MN8TOARS. 10.1016/j.ijantimicag.2012.09.009 Freitas, A.R.; Novais, C.; Tedim, A.P.; Francia, M.V.; Baquero, F.; Peixe, L.; Coque, T.M.. "Microevolutionary Events Involving Narrow Host Plasmids Influences Local Fixation of Vancomycin-Resistance in Enterococcus Populations". PLoS ONE 8 3 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84875538138&partnerID=MN8TOARS. 10.1371/journal.pone.0060589 Sousa, Clara; Grosso, Filipa; Meirinhos-Soares, Luís; Peixe, Luísa; Lopes, João. "Identification of carbapenem-resistantAcinetobacter baumanniiclones using infrared spectroscopy". Journal of Biophotonics 7 5 (2012): 287-294. http://dx.doi.org/10.1002/jbio.201200075. 10.1002/jbio.201200075 Novais, Â.; Rodrigues, C.; Branquinho, R.; Antunes, P.; Grosso, F.; Boaventura, L.; Ribeiro, G.; Peixe, L.. "Spread of an OmpK36-modified ST15 Klebsiella pneumoniae variant during an outbreak involving multiple carbapenem-resistant Enterobacteriaceae species and clones". European Journal of Clinical Microbiology and Infectious Diseases 31 11 (2012): 3057-3063. http://www.scopus.com/inward/record.url?eid=2-s2.0-84867994178&partnerID=MN8TOARS. 10.1007/s10096-012-1665-z Novais, C.; Freitas, A.R.; Silveira, E.; Baquero, F.; Peixe, L.; Roberts, A.P.; Coque, T.M.. "A tet(S/M) hybrid from CTn6000 and CTn916 recombination". Microbiology (United Kingdom) 158 11 (2012): 2710-2711. http://www.scopus.com/inward/record.url?eid=2-s2.0-84868327165&partnerID=MN8TOARS. 10.1099/mic.0.062729-0 Queiroz, M.L.P.; Antunes, P.; Mourão, J.; Merquior, V.L.C.; Machado, E.; Peixe, L.V.. "Characterization of extended-spectrum beta-lactamases, antimicrobial resistance genes, and plasmid content in Escherichia coli isolates from different sources in Rio de Janeiro, Brazil". Diagnostic Microbiology and Infectious Disease 74 1 (2012): 91-94. http://www.scopus.com/inward/record.url?eid=2-s2.0-84865296281&partnerID=MN8TOARS. 10.1016/j.diagmicrobio.2012.05.019 Novais, C.; Freitas, A.R.; Silveira, E.; Baquero, F.; Peixe, L.; Roberts, A.P.; Coque, T.M.. "Different genetic supports for the tet(S) gene in enterococci". Antimicrobial Agents and Chemotherapy 56 11 (2012): 6014-6018. http://www.scopus.com/inward/record.url?eid=2-s2.0-84868026610&partnerID=MN8TOARS. 10.1128/AAC.00758-12 Grosso, F.; Quinteira, S.; Poirel, L.; Novais, Â.; Peixe, L.. "Role of common bla OXA-24/OXA-40-carrying platforms and plasmids in the spread of OXA-24/OXA-40 among Acinetobacter species clinical isolates". Antimicrobial Agents and Chemotherapy 56 7 (2012): 3969-3972. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862529498&partnerID=MN8TOARS. 10.1128/AAC.06255-11 Novais, Â.; Pires, J.; Ferreira, H.; Costa, L.; Montenegro, C.; Vuotto, C.; Donelli, G.; Coque, T.M.; Peixe, L.. "Characterization of globally spread Escherichia coli ST131 isolates (1991 to 2010)". Antimicrobial Agents and Chemotherapy 56 7 (2012): 3973-3976. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862526675&partnerID=MN8TOARS. 10.1128/AAC.00475-12 Gomes-Neves, E.; Antunes, P.; Tavares, A.; Themudo, P.; Cardoso, M.F.; Gärtner, F.; Costa, J.M.; Peixe, L.. "Salmonella cross-contamination in swine abattoirs in Portugal: Carcasses, meat and meat handlers". International Journal of Food Microbiology 157 1 (2012): 82-87. http://www.scopus.com/inward/record.url?eid=2-s2.0-84861726787&partnerID=MN8TOARS. 10.1016/j.ijfoodmicro.2012.04.015 Grosso, F.; Carvalho, K.R.; Quinteira, S.; Ramos, A.; Carvalho-Assef, A.P.D.; Asensi, M.D.; Peixe, L.. "OXA-23-producing Acinetobacter baumannii: A new hotspot of diversity in Rio de Janeiro?". Journal of Antimicrobial Chemotherapy 66 1 (2011): 62-65. http://www.scopus.com/inward/record.url?eid=2-s2.0-78650408697&partnerID=MN8TOARS. 10.1093/jac/dkq406 Macedo, A.S.; Freitas, A.R.; Abreu, C.; Machado, E.; Peixe, L.; Sousa, J.C.; Novais, C.. "Characterization of antibiotic resistant enterococci isolated from untreated waters for human consumption in Portugal". International Journal of Food Microbiology 145 1 (2011): 315-319. http://www.scopus.com/inward/record.url?eid=2-s2.0-79951549354&partnerID=MN8TOARS. 10.1016/j.ijfoodmicro.2010.11.024 Martins, J.; Peixe, L.; Vasconcelos, V.M.. "Unraveling Cyanobacteria Ecology in Wastewater Treatment Plants (WWTP)". Microbial Ecology 62 2 (2011): 241-256. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051670803&partnerID=MN8TOARS. 10.1007/s00248-011-9806-y Antunes, P.; Mourão, J.; Pestana, N.; Peixe, L.. "Leakage of emerging clinically relevant multidrug-resistant Salmonella clones from pig farms". 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"Human and swine hosts share vancomycin-resistant Enterococcus faecium CC17 and CC5 and Enterococcus faecalis CC2 clonal clusters harboring Tn1546 on indistinguishable plasmids". Journal of Clinical Microbiology 49 3 (2011): 925-931. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952327503&partnerID=MN8TOARS. 10.1128/JCM.01750-10 Antunes, P.; Mourão, J.; Machado, J.; Peixe, L.. "First description of qnrS1-IncN plasmid in a ST11 Salmonella Enteritidis clinical isolate from Portugal". Diagnostic Microbiology and Infectious Disease 69 4 (2011): 463-465. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952425613&partnerID=MN8TOARS. 10.1016/j.diagmicrobio.2010.11.004 Extremina, C.I.; Costa, L.; Aguiar, A.I.; Peixe, L.; Fonseca, A.P.. "Optimization of processing conditions for the quantification of enterococci biofilms using microtitre-plates". 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Microbial Drug Resistance 8 2 (2002): 93-97. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035988075&partnerID=MN8TOARS. 10.1089/107662902760190635 Da Silva, G.J.; Leitão, R.; Peixe, L.. "Emergence of carbapenem-hydrolyzing enzymes in Acinetobacter baumannii clinical isolates". Journal of Clinical Microbiology 37 6 (1999): 2109-2110. Cardoso, O.; Sousa, J.C.; Leitao, R.; Peixe, L.. "Carbapenem-hydrolysing ß-lactamase from clinical isolates of Pseudomonas aeruginosa in Portugal [2]". Journal of Antimicrobial Chemotherapy 44 1 (1999): http://www.scopus.com/inward/record.url?eid=2-s2.0-0032838270&partnerID=MN8TOARS. 10.1093/jac/44.1.135 Peixe LV; Sousa JC; Perez-Diaz JC; Baquero F; Peixe, L.V.; Sousa, J.C.F.; Perez-Diaz, J.C.; Baquero, F.. "A bla(TEM-1b)-derived TEM-6 beta-lactamase: a case of convergent evolution.". Antimicrobial Agents and Chemotherapy 41 5 (1997): 1206. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030903143&partnerID=MN8TOARS. Neto Ferreira, H.; Miller, G.H.; Vaz, M.J.; Queiros, M.L.; Vieira Peixe, L.M.; Silva, G.C.; Cardoso, O.; Leitao, R.; Sousa, J.C.. "Molecular characterization of the bacterial resistance to the aminoglycoside antibiotics in hospital isolated strains \| CARACTERIZACAO MOLECULAR DA RESISTENCIA BACTERIANA AOS ANTIBIOTICOS AMINOGLICOSIDEOS-AMINOCICLITOIS EM ISOLADOS CLINICOS HOSPITALARES". Arquivos de Medicina 8 3 (1994): 137-139. http://www.scopus.com/inward/record.url?eid=2-s2.0-0028031417&partnerID=MN8TOARS. Sousa, J. C.; Carneiro, G.; Peixe, M. L.; Queirós, M. L.; Rebelo, I.. "Characterization of ß-lactamases encoded by pathogenic strains of Escherichia coli from Portugal". Journal of Antimicrobial Chemotherapy 27 4 (1991): 437-440. http://dx.doi.org/10.1093/jac/27.4.437. 10.1093/jac/27.4.437
Artigo em revista (magazine)	Neto Ferreira, H; Miller, GH; Vaz, MJ; Queiros, ML; Peixe, L; Silva, GC; Cardoso, O; Leitão, R; Sousa, JC. "Molecular characterization of the bacterial resistance to the aminoglycoside antibiotics in hospital isolated strains", Arquivos de Medicina , 1994, http://www. scopus.com/inward/record.url?eid=2-s2.0-0028031417&partnerID=MN8TOARS. Vaz, M.J.M.; Sousa, J.C.; Torres Pereira, A.; Neto Ferreira, H.; Peixe, L.M.. "Characterization of beta-lactamases produced by pathogenic strains of S. aureus", Arquivos de Medicina, 1993, http://www.scopus.com/inward/record.url?eid=2-s2.0-0027369269&partnerID=MN8TOARS. Sousa, J.C.; Queiros, M.; Peixe, L.V.; Neto, H.M.; Santos, F.. "In vitro behaviour of pathogenic strains of Haemophyllus influenzae face to beta-lactamic antibiotics", Arquivos de Medicina, 1992, http://www.scopus.com/inward/record.url?eid=2-s2.0-0027056030&partnerID=MN8TOARS. Sousa, J.C.; Aguiar, A.; Cabral, M.; Peixe, M.L.; Queiros, M.L.; Pinto, M.E.; Carneiro, G.; Vasques, M.T.. "High frequence of fecal E. coli strains resistents to beta-lactamic antibiotics in lactents submitted to amoxycillin therapy", Arquivos de Medicina, 1990, http://www.scopus.com/inward/record.url?eid=2-s2.0-0025010907&partnerID=MN8TOARS.
Capítulo de livro	Antunes, P; Novais, Carla; Peixe, Luísa. "Food-to-Humans Bacterial Transmission". In Microbial Transmission, editado por American Society of Microbiology. ASM Press, 2019. Publicado • 10.1128/9781555819743 Freitas, Ana R.; Novais, Carla; Peixe, Luísa; Coque, Teresa M.; Freitas, AR; Novais, Carla; Peixe, L; Coque, TM. "Isolation and Visualization of Plasmids from Gram-Positive Bacteria of Interest in Public Health". In Methods in Molecular Biology, 21-38. Springer US, 2019. 10.1007/978-1-4939-9877-7_2 Luís Meirinho-Soares; Peixe, L. "Fundamentos de Microbiologia. Esterilização, desinfeção e antissepsia.". In MICROBIOLOGIA MÉDICA, 83-89. Portugal: LIDEL, 2014. Publicado Coque, TM; Freitas, AR; Novais, Carla; Peixe, L; Baquero, F. "Mobile Genetic Elements and Lateral Genetic Transfer in Enterococci. In: Enterococcus and Safety". In Advances in Food Safety and Food Microbiology. Brasil: Nova Publishers, 2011. Publicado João Carlos Figueiredo Sousa; Peixe, Luísa. "Antibióticos anti-bacterianos". In Microbiologia. Portugal: Lidel, Edições Técnicas, 2010. Publicado Peixe, L. "Esterilização, antisepsia e desinfecção". In Microbiologia, 221-231. Portugal: Lidel, 1998. Publicado Maria São José Nascimento; João Carlos Sousa; Maria Isaura Sousa; Miguel Cabral; Eugénia Pinto; Helena Ferreira; Peixe, L. "Antimicrobianos". In Microbiologia. Portugal: Lidel, 1998. Publicado
Livro	Sousa, JC; Machado, E; Novais, Carla; Peixe, L; Amorim, JM; Monteiro, N. Antibióticos - Volume I. Portugal. 2016. Publicado
Manual	Peixe, L. Guia básico de MicroMundo@UPorto: EM BUSCA DE MICRORGANISMOS PRODUTORES DE NOVOS ANTIBIÓTICOS EM HABITATS NATURAIS. Portugal. 2018. Publicado
Poster em conferência	Rocha, Joana; Botelho, João Francisco Tomaz Santos; Ksiezarek, Magdalena; Ribeiro, Teresa Goncalves; Machado, Miguel Paulo; Carrico, Joao Andre; Peixe, Luisa Maria Vieira; et al. "Lactobacillus femina sp. nov., a new species of lactobacillus delbrueckii group". 2019. Ksiezarek, M; Perovic, SU; Rocha, J; Grosso, F; Peixe, L. "Female urinary microbiota: who´s coming, who´s going, and who´s staying". Trabalho apresentado em MicroBiotec 2019, 2019. Ksiezarek, M; Perovic, SU; Rocha, J; Grosso, F; Peixe, L. "Culturomics in Action – Advances in the Profiling of the Complex Healthy Female Urinary Microbiota". Trabalho apresentado em ASM Microbe 2019, 2019. Ksiezarek, M; Perovic, SU; Rocha, J; Moreira, M; Grosso, F; Peixe, L. "Vaginal and urinary microbiota in healthy women of reproductive age: greater pathogens sharing than previously thought". Trabalho apresentado em 29th European Congress of Clinical Microbiology & Infectious Diseases, 2019. Peixoto, B; Rodrigues, C; Ksiezarek, M; Perovic, SU; Rocha , J; Novais, Â; Peixe, L. "Escherichia coli and Klebsiella pneumoniae from urinary and intestinal microbiota: friends or foes?". Trabalho apresentado em Investigação Jovem da Universidade do Porto (IJUP 2019), 2019. Perovic, SU; Rocha, J; Ksiezarek, M; Silva, I.; Martins, V; Grosso, F; Peixe, L. "Capturing the diversity of the female urinary microbiota through improved culturomic and metagenomic analysis". Trabalho apresentado em 28th European Congress of Clinical Microbiology and Infectious Diseases, 2018. Ksiezarek, M; Grosso, F; Martins, V; Silva, I.; Rocha, J; Perovic, SU; Peixe, L. "Urinary microbiota from healthy women as a reservoir of neonates´ pathogens". Trabalho apresentado em 28th European Congress of Clinical Microbiology and Infectious Diseases, 2018. Perovic, SU; Rocha, J; Ksiezarek, M; Grosso, F; Peixe, L. "Capturing the healthy female urinary microbiome diversity by improved metagenomic protocol". Trabalho apresentado em EMBL Symposium - The Human Microbiome, 2018. Rocha, J; Ksiezarek, M; Grosso, F; Perovic, SU; Peixe, L; Carriço, JA. "Methodological improvements on urine sample analysis: towards comprehensive understanding of urinary microbiome". Trabalho apresentado em ASM Microbe 2017, 2017.
Pré-impressão	Andreia Rebelo; Agostinho Almeida; Luísa Peixe; Patrícia Antunes; Carla Novais. "Unraveling the Role of Metals and Organic Acids towards Bacterial Antimicrobial Resistance in the Food Chain". Pré-impressão. 2023. https://doi.org/10.20944/preprints202307.1236.v1. 10.20944/preprints202307.1236.v1 Svetlana Ugarcina Perovic; Magdalena Ksiezarek; Joana Rocha; Elisabete Alves Cappelli; Márcia Sousa; Teresa Gonçalves Ribeiro; Filipa Grosso; Luísa Peixe. "Extended bacterial diversity of the urinary microbiome of reproductive-age healthy European women captured by culturomics and long-read amplicon sequencing". Pré-impressão. 2022. https://doi.org/10.1101/2022.01.19.476882. 10.1101/2022.01.19.476882
Resumo em conferência	Perovic, SU; Ksiezarek, M; Rocha, J; Vale, L; Silva, C; Dinis, P; Antunes Lopes, T; Peixe, L. "Time to change microbiological approach to overactive bladder". Trabalho apresentado em 34th Annual EAU Congress, Barcelona, 2019. Publicado • DOI: https://doi.org/10.1016/S1569-9056(19)30077-6
Tese / Dissertação	Peixe, L. "Characterization of plasmidic extended spectrum b-lactamases in E. coli". Doutoramento, 1996.

Propriedade Intelectual

Pedido provisório de patente

2019. "HIGH-YIELD NATURAL PRODUCTION OF 2-PHENYLETHANOL USING AN ENVIRONMENTAL BACTERIAL STRAIN".
Protegido

Outros

Outra produção

ICEs are the main reservoirs of the ciprofloxacin-modifying crpP gene in Pseudomonas aeruginosa. 2020. João Botelho; Filipa Grosso; Luísa Peixe. https://doi.org/10.1101/2020.03.13.991208.
10.1101/2020.03.13.991208
Registration of new bacterial species - Lactobacillus mulieris sp. nov.. 2020. Peixe, L.
doi: 10.1099/ijsem.0.003901
Comparative genomics of global optrA-carrying Enterococcus faecalis uncovers common genetic features and a chromosomal hotspot for optrA acquisition. 2019. Ana R. Freitas; Ana P. Tedim; Carla Novais; Luísa Peixe. https://doi.org/10.1101/785295.
10.1101/785295
A large self-transmissible plasmid from Nigeria confers resistance to multiple antibacterials without a carrying cost. 2019. Rubén Monárrez; Molly Braun; Olivia Coburn-Flynn; João Botelho; Babatunde W. Odeotyin; Jose I. Otero-Vera; Naa Kwarley Quartey; et al. https://doi.org/10.1101/545939.
10.1101/545939
Registration of new bacterial species - Citrobacter portucalensis sp. nov.. 2017. Peixe, L.
doi: 10.1099/ijsem.0.002154.
Registration of new bacterial species - Citrobacter europaeus sp. nov.. 2017. Peixe, L.
doi: 10.1099/ijsem.0.001606
Registration of new bacterial species - Bacillus invictae sp. nov.. 2014. Peixe, L.
doi: 10.1099/ijs.0.067850-0

Atividades

Apresentação oral de trabalho

	Título da apresentação	Nome do evento Anfitrião (Local do evento)
2022/09/28	Strategies and options to mitigate antimicrobial resistance in food-producing environments	2nd Global Conference on Foodborne AMR Ministro da Alimentação e Saúde da República da Coreia; Food and Agriculture Organization of the United Nations (Seoul, Coreia do Sul)
2019	Paradigm shift in female urinary microbiota	Microbiology day, FFUP/ICBAS (Portugal)
2019	Time to change microbiological approach to overactive bladder	34th Annual EAU Congress (Espanha)
2019	Female urinary tract microbiota profiling: a comprehensive in-depth study	Meeting - Urobiome 2019 (San Diego, Estados Unidos)
2019	Linezolid-resistant Enterococcus faecium carrying identical Tn6246::fexB-poxtA in humans and bovine from different continents	29th European Congress Clinical Microbiology and Infectious Diseases (Países Baixos)
2019	A powerful and cost-effective strain typing tool: the ideal solution for real-time control of Klebsiella pneumoniae infections	Congress of Microbiology and Biotechnology (Microbiotec19) (Portugal)
2019	Resistance in Gram positive microorganisms	Antimicrobial Resistance in the 21st century: a global threat Pan-American Association for Infectiology, Spanish Society for Infectious Diseases and Clinical Microbiology, Clinical Microbiology and Infection, Lancet Infectious Diseases, ESCMID (Panamá)
2019	New methods in bacterial identification and diagnosis	XXIII Encontro Científico APAC Associação Portuguesa de Analistas Clínicos (APAC) (Portugal)
2019	Typing by FTIR	12th International Meeting on Microbial Epidemiological Markers (IMMEM XII) ESCMID, ESGEM (Croácia)
2019	Comparative genomics analysis of optrA-carrying Enterococcus faecalis strains: new insights on clonal and genetic hotspots for optrA acquisition	12th International Meeting on Microbial Epidemiological Markers (IMMEM XII) ESCMID, ESGEM (Croácia)
2019	Improving bacterial typing, a strategy to contain antibiotic resistance	Encontro com a Ciência e Tecnologia em Portugal (Ciência 2019) Fundação para a Ciência e Tecnologia, Ciência Viva (Portugal)
2019	Multi-resistant microorganisms - Where, when and how?	I Encontro Controlo da Infeção Hospital da Misericórdia de Vila Verde (Portugal)
2019	Key players driving environmental emergence and spread of AMR	International Conference on One Health Antimicrobial Resistance (ICOHAR19) ESGVM, ESCMID (Países Baixos)
2019	Future of Antibiotherapy	I Jornadas dos Serviços Farmacêuticos Hospital de Braga (Portugal)
2018	Unveiling secrets of urinary microbiota: impact in the urinary tract diseases	Microbiology day, FFUP/ICBAS (Portugal)
2018	From farm to fork: dissemination of Tn554::fexA-optrA in linezolid-resistant Enterococcus faecalis clones from chicken faeces and meat in Tunisia	28th European Congress Clinical Microbiology and Infectious Diseases (Espanha)
2018	Escherichia coli resistente a fosfomicina causante de infecciones urinarias: elevada frecuencia de ST131 y detección del gen fosA3	XXII Congreso Nacional de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (Espanha)
2018	Outbreak of a multidrug resistant and phylogenetically distant ST17 Klebsiella pneumoniae producing CTX-M-15 among young children	29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) European Society of Clinical Microbiology and Infectious Diseases (ESCMID) (Países Baixos)
2018	The secret is on sugar: capsular type explains the discrimination of Acinetobacter baumannii clones by fourier-transform infrared (FT-IR) spectroscopy and multilocus sequence typing	28th ECCMID ESCMID (Espanha)
2018	Water and soil as reservoirs for MDR genes	28th ECCMID ESCMID (Espanha)
2017	Antibiotics resistance, utopia/dystopia and the future	Antibiotic resistance, Science-Society Dialogue and the Future - rehearsing scenarios Instituto de Ciências Biomédicas Abel Salazar (Porto, Portugal)
2017	Application of FT-IR and MALDI-TOF MS for bacterial typing: a current standpoint	FT-IR Spectroscopy in Microbiological and Medical Diagnostics (Alemanha)
2017	Does the food production has a key role in the antibiotic resistance burden?	Federation of European Microbiological Societies (FEMS) 2017 (Espanha)
2017	Connecting resistance data in the animal and human sector	27th European Congress of Clinical Microbiology and Infectious Diseases (Áustria)
2017	Bacterial typing - what methodology should I use? (Meet the experts session)	27th European Congress of Clinical Microbiology and Infectious Diseases (Áustria)
2017	Good bacteria, bad bacteria – insights from healthy women urinary microbiota	MicroBiotec 2017 (Portugal)
2016	Antimicrobial Resistance - The Food Chain Connection	Gut Microbiome 2016 University of Manipal (Índia)
2016	Novelties in Clinical Bacteriology: from basics to practice	26th European Congress of Clinical Microbiology and Infectious Diseases (Países Baixos)
2016	Epidemiology in Northern Portugal of carbapenemases-producing strains	Workshop in Carbapenemases Sociedade Portuguesa de Doenças Infecciosas e Microbiologia Clínica (Portugal)
2016	Clones or plasmids: which is the most important in the spread of antibiotic resistance	Antibiotic Resistance Colloquium (Portugal)
2015	Antimicrobial Resistance and the Food Chain	International Workshop on Dermatological Infections and Food-borne Diseases (Vietname)
2015	Antimicrobial resistance: the animal production connection?	25th Congress of the Spanish Society for Microbiology (Espanha)
2015	Resistance in the animal sector and its impact on humans	Liochemfilm workshop (Itália)
2015	Phylogeny and comparative genomics unveil independent diversification trajectories of qnrB and genetic surroundings within Citrobacter sp	3rd International Symposium on the Environmental Dimension of Antibiotic Resistance (EDAR 3) (Alemanha)
2014	Antimicrobial resistance:from farm to table	ALAM 2014: XXII Congresso Latino-americano de Microbiologia (Colômbia)
2014	Antibiotic resistance	Simpósio APTFeridas 2014 - "Infection and Quality: What Challenges?" (Portugal)
2014	Bacterial adaptation, a major obstacle to the therapeutic success of antibiotics	V Forum on Pharmacological Inv.: The clinical use of anti-inflammatory and anti-infectious drugs (Portugal)
2013	Biting off more than we can chew? How multiple drug resistance is affecting how we manage food-borne infection	23rd European Congress of Clinical Microbiology and Infectious Diseases (Alemanha)
2012	Biofilm Persistence and Antibiotic Resistance in Clinical Acinetobacter baumannii isolates	35th International Congress of the Society for Microbial Ecology and Disease (Espanha)
2011	Carbapenem resistance in Enterobacteriaceae: a global perspective	8th International Congress of Pharmaceutical Sciences - CIFARP 2011 (Brasil)

Orientação

	Título / Tema Papel desempenhado	Curso (Tipo) Instituição / Organização
2021/05/01 - Atual	Lactobacillaceae in the urinary microbiota of patients with overactive bladder Orientador de Andreia Sofia Rodrigues Garcia	Microbiologua (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2021 - Atual	Understanding the plasmidome and bacteriocinome of human contemporary Enterococcus spp. for future targeted therapies against multidrug-resistant infections Coorientador	PhD program in Pharmaceutical Sciences (Doutoramento)
2020/11/01 - Atual	Gard@GENUT&OAB: A targeted approach to overactive bladder syndrome through exploration of Gardnerella features Orientador de Márcia Daniela Rocha de Sousa	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2019 - Atual	Adaptation of Enterococcus to dynamic environments: impact of biocides on the epidemiology of tolerant populations and resistance to antibiotics. ( Coorientador	PhD program in Pharmaceutical Sciences (Doutoramento)
2012 - Atual	Epidemiologia de isolados de Escherichia coli resistentes a cefalosporinas de espectro alargado Orientador de Ana Constança Mendes	Patologia e Genética Molecular (Doutoramento) Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2017 - 2022/01	Comprehensive urinary microbiota profiling: towards better understanding of female urinary tract in health and disease Orientador de Magdalena Ksiezarek	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2016 - 2018	Carbapenemase-producing Enterobacteriaceae: from colonization to infection Orientador de Ana Margarida Guerra	Análises Clínicas (Mestrado) Universidade do Porto Faculdade de Farmácia, Portugal
2015 - 2018	New insights on emergence and success of carbapenem-resistant Acinetobacter spp Orientador de Liliana de Jesus Vieira da Silva	Safety and Occupational Health (Doutoramento) Universidade do Porto Faculdade de Engenharia, Portugal
2015 - 2018	Carbapenemase producers of Pseudomonas aeruginosa: lights on new mobile genetic elements Orientador de João Francisco Tomaz Santos Botelho	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2015 - 2018	Tracking Salmonella Population Dynamics and Antimicrobial Resistance: local insights with a global impact Coorientador de Joana Araújo Alves de Campos	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2014 - 2017	In depth characterization of contemporary Escherichia coli and Klebsiella pneumoniae resistant to extended-spectrum B-lactams: from key molecular drivers to clonal delineation Orientador de Carla Alexandra Parada Rodrigues	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2012 - 2016	Extending the knowledge on drivers of intrinsic and acquired resistance to cephalosporins and quinolones in Enterobacteriaceae Orientador de Teresa Maria Pinto Gonçalves Ribeiro	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2012 - 2016	Contribution of biocides to the selection of Salmonella non-typhoid resistant to antibiotics: a multilayered approach Coorientador de Joana Vanessa Cordeiro Melro Mourão	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2012 - 2015	Temporal and spatial variation in the microbial biota of sea anemones in the Portuguese coast – natural vs abnormal shifts induced by global changes and its relevance for the screening of new marine drugs Coorientador de Joana Rocha	Marine and Environmental Sciences (Doutoramento) Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2011 - 2014	Unveiling population diversity, biosurfactant and antibacterial agents production of Bacillus pumilus group species Orientador de Fabiana Raquel Gouveia Pinto Nevado Branquinho	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2011 - 2014	Tolerância a biocidas e dispersão da resistência a antibióticos: uma abordagem fenotípica e molecular em Enterococcus spp de diferentes origens. Coorientador de Maria Eduarda Moreno da Silveira	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2009 - 2012	Resistance in Salmonella isolates from different sources (animals, food animals and clinical): molecular characterization of resistance genes and molecular epidemiology Orientador de Patrícia Sofia Carneiro Antunes	Microbiology (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2009 - 2012	Ecology and evolution of antimicrobial resistance in Enterococcus: a multilayered molecular approach with emphasys in the plasmid diversity Orientador de Ana Raquel Pinho Freitas	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2008 - 2012	Multi-level analysis of carbapenem-resistant Acinetobacter spp.: towards an understanding on population dynamics Orientador de Filipa Maria Fortio Mourato Teixeira Grosso	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2007 - 2012	Study of beta-lactams and quinolones resistance in Salmonella and Escherichia coli recovered from the hospital environment and community Orientador de Mara Queiroz	Microbiologia Médica Humana (Doutoramento) Universidade do Estado do Rio de Janeiro, Brasil
2009 - 2011	Epidemiologia de ß-Lactamases Adquiridas do tipo AmpC em Isolados Clínicos Humanos de Enterobacteriaceae Orientador de Francisco José Oliveira Freitas	Clinical Microbiology (Mestrado) Universidade Fernando Pessoa Faculdade de Ciências da Saúde, Portugal
2004 - 2007	Emergence and genetic evolution of plasmids and integrons in bacterial strains multiple resistants to antibiotics Orientador de Elisabete Maria Pereira Machado	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2002 - 2005	Eco-epidemiologia de bacilos de Gram negativo produtores de carbapenemases com impacto clínico Orientador de Sandra Maria Basílio Quinteira	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
2001 - 2005	Epidemiology of the resistance to vancomycin in portuguese strains (from animals, food animals and humans) of Enterococcus spp Orientador de Carla Alexandra Novais de Oliveira e Silva	Microbiologia (Doutoramento) Universidade do Porto Faculdade de Farmácia, Portugal
1999 - 2002	Resistência aos antibióticos ß-lactâmicos em isolados clínicos de Acinetobacter spp : caracterização molecular de novas carbapenemases, IMP-5 e OXA-33, e estudo da relação clonal entre os isolados resistentes ao imipenemo Orientador de Gabriela Conceição Duarte Jorge da Silva	Microbiology and Parasitology (Doutoramento) Universidade de Coimbra Faculdade de Farmácia, Portugal
1999 - 2001	B-lactamases de espectro alargado em escherichia coli e klebsiella pneumoniae isoladas de águas marinhas Coorientador de Alexandra Sofia Morgado Figueiredo	Quality control (Mestrado) Universidade do Porto Faculdade de Farmácia, Portugal
1999 - 2001	Incidência e susceptibilidade a agentes antimicrobianos de salmonella e listeria monocytogenes em produtos avícolas Orientador de Patrícia Sofia Carneiro Antunes	Quality control (Mestrado) Universidade do Porto Faculdade de Farmácia, Portugal
1998 - 2001	Susceptibilidade aos agentes antimicrobianos de isolados clínicos de Pseudomonas aeruginosa : mecanismos de resistência aos carbapenemos Orientador de Olga Maria Antunes Rodrigues Carvalho Cardoso	Microbiology and Parasitology (Doutoramento) Universidade de Coimbra Faculdade de Farmácia, Portugal
1997 - 1999	Resistências aos antibióticos B-lactâmicos em Enterobacteriaceae isoladas de águas de consumo Orientador de Sandra Maria Basílio Quinteira	Quality control (Mestrado) Universidade do Porto Faculdade de Farmácia, Portugal

Organização de evento

	Nome do evento Tipo de evento (Tipo de participação)	Instituição / Organização
2019/07/19 - 2019/07/19	1st Workshop MicroMundo@UPorto 2019 (2019/07/19 - 2019/07/19) Oficina (workshop) (Presidente da Comissão Organizadora)	Universidade do Porto Faculdade de Farmácia, Portugal Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
2018/11/15 - 2018/11/15	Opening Session of the innovative Citizen Science project "MicroMundo@UPorto" (2018/11/15 - 2018/11/15) Outro (Presidente da Comissão Organizadora)	Universidade do Porto Faculdade de Farmácia, Portugal Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
2018/09/18 - 2018/09/21	12th International Meeting on Microbial Epidemiological Markers (IMMEM XII) (2018/09/18 - 2018/09/21) Encontro (Membro da Comissão Científica)	European Society of Clinical Microbiology and Infectious Diseases, Suiça Escmid Study Group for Epidemiological markers (ESGEM), Suiça
2014/09/19 - 2014/09/19	Carbapenemases in Gram negative bacilli: detection and clinical implications (2014/09/19 - 2014/09/19) Oficina (workshop) (Presidente da Comissão Organizadora)	Universidade do Porto Faculdade de Farmácia, Portugal

Participação em evento

	Descrição da atividade Tipo de evento	Nome do evento Instituição / Organização
2019/04/16 - 2019/04/16	Chair Session "Bacterial resistance: evolution, plasmids and fitness" Congresso	29th ECCMID European Society of Clinical Microbiology and Infectious Diseases, Suiça
2019/04/15 - 2019/04/15	Chair Session "Secrets of Acinetobacter baumannii's virulence" Congresso	29th ECCMID European Society of Clinical Microbiology and Infectious Diseases, Suiça
2018/09/20 - 2018/09/20	Chair Session "Translation into practice – genomebased pathogen surveillance: hype or real benefit? in collaboration with EFWISG" Encontro	12th International Meeting on Microbial Epidemiological Markers (IMMEM XII) European Society of Clinical Microbiology and Infectious Diseases, Suiça Escmid Study Group for Epidemiological markers (ESGEM), Suiça
2018/04/23 - 2018/04/23	Chair Session "Emerging and reemerging water-borne pathogens" Congresso	28th ECCMID European Society of Clinical Microbiology and Infectious Diseases, Suiça
2018/04/21 - 2018/04/21	Chair Session "Trends in bacterial typing: tools and applications" Congresso	28th ECCMID European Society of Clinical Microbiology and Infectious Diseases, Suiça

Júri de grau académico

	Tema Tipo de participação	Nome do candidato (Tipo de grau) Instituição / Organização
2016	Acidentes de trabalho associados a fatores de risco biológico em contexto hospitalar Arguente	Cláudia Sofia Barros Vieira (Doutoramento) Universidade do Porto Faculdade de Engenharia, Portugal
2011	Análise molecular de mecanismos determinantes de resistência a antibióticos em Pseudomonas aeruginosa e Acinetobacter ssp. Arguente	Eduardo Carneiro Clímaco (Doutoramento) Universidade de São Paulo Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Brasil
2010	Staphylococcus aureus: towards a comprehensive view on epidemiology and clonal spread Arguente	Teresa Margarida Gomes da Conceição (Doutoramento) Universidade Nova de Lisboa, Portugal
2004	Caracterização dos Genes de Resistência aos Macrólidos e Estreptograminas em Enterococcus sp.Isolados de Frangos para Consumo Humano Arguente principal	Maria João da Silva Costa (Mestrado) Universidade do Porto Faculdade de Farmácia, Portugal

Arbitragem científica em conferência

	Nome da conferência	Local da conferência
2019/09/18 - 2019/09/21	12th International Meeting on Microbial Epidemiological Markers (IMMEM XII)	ESCMID, ESGEM

Arbitragem científica em revista

	Nome da revista (ISSN)	Editora
2013 - Atual	Scientific Reports (2045-2322)	Springer Science and Business Media LLC
2012 - Atual	Antibiotics (2079-6382)	MDPI AG
2009 - Atual	Antimicrobial Agents and Chemotherapy (1098-6596)	American Society for Microbiology

Comissão de avaliação

	Descrição da atividade Tipo de assessoria	Instituição / Organização	Entidade financiadora
2019/05/27 - 2019/05/29	ESCAIDE- European Scientific Conference on Applied Infectious Disease Epidemiology	European Centre for Disease Prevention and Control (ECDC), Suécia	European Commission

Consultoria / Parecer

	Descrição da atividade	Instituição / Organização
2009 - Atual	Portuguese Directorate-General for Health (DGS) consultant (https://www.dgs.pt/directrizes-da-dgs/orientacoes-e-circulares-informativas/circular-informativa-n-02dir-de-29012009-pdf.aspx)	Direcção-Geral da Saúde, Portugal

Curso / Disciplina lecionado

	Disciplina	Curso (Tipo)	Instituição / Organização
2012 - Atual	Clinical Bacteriology - theoretical classes and laboratory practice	Análises Clínicas (Mestrado integrado)	Universidade do Porto Faculdade de Farmácia, Portugal
2007 - Atual	Microbiological Quality - theoretical classes and laboratory practice	Controlo de Qualidade (Mestrado)	Universidade do Porto Faculdade de Farmácia, Portugal
2007 - Atual	Bacteriology - theoretical classes and laboratory practice	Ciências Farmacêuticas (Mestrado integrado)	Universidade do Porto Faculdade de Farmácia, Portugal
2000 - Atual	Clinical Bacteriology - theoretical classes	Análises Clínicas (Mestrado)	Universidade do Porto Faculdade de Farmácia, Portugal
2013 - 2017	Multidisciplinary Seminars - Doctoral Program in Occupational Safety and Health (DemSSO)	Segurança e Saúde Ocupacionais (Doutoramento)	Universidade do Porto Faculdade de Engenharia, Portugal
2005 - 2006	Curricular stage - theoretical classes	Ciências Farmacêuticas (Licenciatura)	Universidade do Porto Faculdade de Farmácia, Portugal
2005 - 2006	Clinical Bacteriology - theoretical classes	Análises Clínicas (Especialização pós-licenciatura)	Universidade do Porto Faculdade de Farmácia, Portugal
2004 - 2006	Bacteriology - theoretical classes and laboratory pratice	Ciências Farmacêuticas (Licenciatura)	Universidade do Porto Faculdade de Farmácia, Portugal
2004 - 2006	Microbiological Control - theoretical classes and laboratory practice	Controlo de Qualidade (Mestrado)	Universidade do Porto Faculdade de Farmácia, Portugal
2004 - 2006	Bacteriology - theoretical classes and laboratory practice	Ciências Farmacêuticas (Licenciatura)	Universidade do Porto Faculdade de Farmácia, Portugal
2003 - 2005	Veterinary drugs and additives - theoretical classes and laboratory practice	Ciências Farmacêuticas (Licenciatura)	Universidade do Porto Faculdade de Farmácia, Portugal
2003 - 2005	Microbiology II - laboratory practice	Ciências Farmacêuticas (Licenciatura)	Universidade do Porto Faculdade de Farmácia, Portugal

Entrevista (jornal / revista)

	Descrição da atividade	Jornal / Forum
2018/08	"The microbiota of the urinary tract has a crucial role in maintaining the state of health"	Jornal Médico Nº 89

Membro de associação

	Nome da associação	Tipo de participação
2013 - Atual	Programa de Prevenção e Controlo de Infeções e Resistência aos Antimicrobianos (PPCIRA)
2009 - Atual	Sociedade Portuguesa de Microbiologia (SPM)
2004 - Atual	European Society for Clinical Microbiology and Infectious Disease

Membro de comissão

	Descrição da atividade Tipo de participação	Instituição / Organização
2018 - Atual	ESCMID Food- and Water-borne Infections Study Group – EFWISG - executive committee (https://www.escmid.org/research_projects/study_groups/foodwater_infections/executive_committee/) Coordenador	European Society of Clinical Microbiology and Infectious Diseases, Suiça
2018 - Atual	Scientific Advisory Board of the "Joint Programming Initiative on Antimicrobial Resistance" (JPIAMR) (https://www.jpiamr.eu/new-jpiamr-sab-members/) Membro	Joint Programming Initiative on Antimicrobial Resistance, Suécia
2018 - Atual	National Observatory for Emerging Risks (Observatório Nacional de Riscos Emergentes - ONRE; Portugal) Membro
2014 - Atual	Commission B: Additives and products or substances used in animal food (https://webcache.googleusercontent.com/search?q=cache:2HRI97ER4W0J:https://www.asae.gov.pt/ficheiros-externos-newsletter/newsletter-n-5-especial-conselho-cientifico-pdf.aspx+&cd=1&hl=pt-PT&ct=clnk&gl=pt) Consultor	Autoridade de Segurança Alimentar e Económica, Portugal
2014 - Atual	Qualified presumption of safety (QPS) working group Membro	European Food Safety Authority, Itália
2018 - 2021	Panel on Biological Hazards (http://www.efsa.europa.eu/en/panels/biohaz) Membro	European Food Safety Authority, Itália
2015 - 2019	BIOCONTAM Unit. Scientific Network for Microbiological Risk Assessment (MRA) (https://www.efsa.europa.eu/sites/default/files/AF/170307/AF170307-ax18_2.pdf) Membro	European Food Safety Authority, Itália

Outro júri / avaliação

	Descrição da atividade	Instituição / Organização
2015 - Atual	Editorial Board of Antimicrobial Agents and Chemotherapy Journal
2015 - Atual	Editorial Board of Microbial Drug Resistance Journal
2014 - Atual	Editorial Board of Frontiers in Microbiology Journal
2013 - Atual	Reviewer for ESCMID Research Grants applications	European Society of Clinical Microbiology and Infectious Diseases, Suiça
2019/01/15 - 2019/02/15	29th ECCMID Abstract Reviewer	European Society of Clinical Microbiology and Infectious Diseases, Suiça
2018/01/15 - 2018/02/15	28th ECCMID Abstract Reviewer	European Society of Clinical Microbiology and Infectious Diseases, Suiça

Tutoria

	Tópico	Nome do aluno
2018/07/01 - 2018/09/30	The search of urine interleukin profile for the diagnosis of Overactive Bladder Syndrome: optimization of a flow-cytometry based multiplex commercial kit	Maria Carolina Borges de Oliveira
2018/02/01 - 2018/04/30	Lactobacillus spp. in healthy female urinary tract: identification issues and bacterial inhibitory activity assessment	Ivan Silva
2018/02/01 - 2018/04/30	Streptococcus agalactiae in the urinary microbiota of healthy women: occurrence and diversity	Vanessa Martins
2008 - 2011	Characterization of carbapenem-resistant Pseudomonas aeruginosa strains from different hospital wards in South Hungary	Csilla Ratkai

Distinções

Prémio

2019	Pedagogic Inovation Award Universidade do Porto, Portugal
2017	ESCMID Fellow European Society of Clinical Microbiology and Infectious Diseases, Suiça

Outra distinção

2018	BEST RATED ABSTRACT- The secret is on sugar: capsular type explains the discrimination of Acinetobacter baumannii clones by fourier-transform infrared (FT-IR) spectroscopy and multilocus sequence typing”) for the 28th ECCMID EUROPEAN SOCIETY FOR CLINICAL MICROBIOLOGY AND INFECTIOUS DISEASES, Suiça
2017	Best Poster - 10ª Reunião Anual PortFIR Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal
2011	Nutrition Award
2010	Nutrition Award
2009	Research Grant to Support Ph.D. in Scope of Infectious Pathology- Principal Coordinator