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Luísa Peixe, PharmD. MSc, PhD., Professor, Vice-Director of Applied Molecular Biosciences Unit (UCIBIO) since 2023 and leader and founder of BACT_DRUGS Lab from 2005. As a Full Professor in Microbiology at FFUP and an ESCMID fellow, her expertise lies in Bacteriology, Antimicrobials, and Antimicrobial Resistance. Dr. Peixe obtained her pharmaceutical degree from University of Lisboa, Lisboa, Portugal, and obtained a M.S. equivalent degree in Microbiology and a Ph.D. in Microbiology, University of Porto with a thesis in antimicrobial resistance area developed in Hosp. Ramón y Cajal, Madrid and Laboratory of Microbiology of FFUP. Dr. Peixe is a nationally and internationally recognized expert conducting basic, translational and clinical research on mechanisms, evolution and transmission of antibiotic resistance, within a One Health approach. Her expertise also includes the clinical impact of resistance and molecular epidemiology of antibiotic-resistant organisms, using FT-IR spectroscopy and state-of-the-art genomic analyses. More recently, she is also interested in the role of urobiome in health and disease, as well as reservoirs of antimicrobial resistance, allowing to enlarge the expertise of her group in methodologies to capture bacterial diversity (e.g. culturomic and amplicon sequencing) and in bacterial taxonomy. Dr. Peixe is an expert of Biohazard Panel of EFSA (European Food Safety Authority) and of the Qualitative Presumption of Safety working group of EFSA, member of scientific advisory board of Joint Program Initiative for Antimicrobial Resistance (JPIAMR) and has served as reviewer for different funding agencies (e.g. FP7-European Commission; Horizon 2020; Swiss National Science Foundation). She participated in the EMA (European Medicines Agency) working groups for the criteria to designate antimicrobials or groups of antimicrobials reserved for treatment of certain infections in human and for the list of antibiotics restricted to human use. She has been active in professional societies including the ESCMID, where she acted as Director of the ESCMID Summer School in 2009, Chair of 'Food and Water Borne Diseases Study Group' or in the Program Planning Committee of ECCMID. She participated also in the Program planning committee of ASM Microbe (2017), IMMEM (2019) and in Microbiotec. Her involvement also extended to the development of the FEMS 'Common European Curriculum for degrees in health sciences'. She has been involved in editorial board of scientific journals (e.g. Antimicrobial Agents and Chemotherapy, Clinical Microbiology and Infection, Scientific Reports, Microbial Drug Resistance) and is a frequent reviewer for most relevant journals in antimicrobial resistance field. She is also the coordinator of citizen science projects MicroMundo@UP and SAFE-Porto, improving antimicrobial resistance awareness. Dr. Peixe research has greatly contributed to elucidate the role of different settings to the AMR burden, to the characterization of new antibiotic resistance mechanisms, and relevant mobile genetic platforms carrying resistance determinants. Their group also contributed to improve the diagnosis and control of resistant bacteria, through the development of Blue-Carba test, allowing the rapid detection of carbapenemase (recommended by WHO), and typing by FT-IR spectroscopy. Her group described already several new bacterial species, demonstrating a larger bacterial urobiome diversity than previously described. Dr. Peixe holds a national and international patent and honored 32 awards, including the recent 'Prémios Maratona da Saúde-2022'. She is author of over 270 original research articles published in high-ranking international journals and a frequent invited speaker at national and international meetings. She supervised 16 post-doctoral (junior and auxiliar) researchers, 35 PhD, 12 Masters and a vast number of undergraduated, and successfully coordinated 12 research projects resulted from competitive funding.
Identification

Personal identification

Full name
Luísa Peixe

Citation names

  • Peixe, L
  • Peixe LV
  • Luísa Vieira Peixe
  • Luísa Maria Vieira Peixe

Author identifiers

Ciência ID
731C-0B6D-8F44
ORCID iD
0000-0001-5810-8215
Researcher Id
6603892851

Email addresses

  • lpeixe@gmail.com (Professional)
  • lpeixe@ff.up.pt (Professional)

Telephones

Telephone
  • 220428580 (Professional)

Addresses

  • Lab. de Microbiologia. Faculdade de Farmácia. Universidade Porto. Edificio 3, Piso 5, Sala 27. Rua Jorge Viterbo Ferreira, 228, 4050-313, Porto, Porto, Portugal (Professional)

Websites

Knowledge fields

  • Medical and Health Sciences - Health Sciences - Infectious Diseases
  • Medical and Health Sciences - Health Sciences - Epidemiology
  • Medical and Health Sciences - Health Sciences - Public and Environmental Health
  • Natural sciences - Biological Sciences - Microbiology
  • Agrarian Sciences - Veterinary Sciences

Languages

Language Speaking Reading Writing Listening Peer-review
Spanish; Castilian Intermediate (B1) Intermediate (B1) Beginner (A1) Intermediate (B1)
French Intermediate (B1) Advanced (C1) Beginner (A1) Intermediate (B1)
English Intermediate (B1) Intermediate (B1) Intermediate (B1) Intermediate (B1)
Portuguese Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
2005
Concluded
Integrated Cycle of Studies in Pharmaceutical Sciences (Título de Agregado)
Universidade do Porto Faculdade de Farmácia, Portugal
"N/A" (THESIS/DISSERTATION)
Aprovado por Unanimidade
1996
Concluded
Microbiology (Doutoramento)
Universidade do Porto Faculdade de Farmácia, Portugal
"Characterization of plasmidic extended spectrum b-lactamases in E. coli" (THESIS/DISSERTATION)
Aprovado com distinção e louvor por unanimidade (m
1996
Concluded
Microbiologia (Doutoramento)
Universidade do Porto Faculdade de Farmácia, Portugal
"Caracterização de Beta-lactamases Plasmidicas Ampliado em Escherichia Coli" (THESIS/DISSERTATION)
1991
Concluded
Prova Pedagógica e de Capacidade Científica (Outros)
Major in Microbiologia
Universidade do Porto Faculdade de Farmácia, Portugal
Muito Bom
1987
Concluded
Pharmaceutical Sciences (Licenciatura)
Universidade de Lisboa Faculdade de Farmácia, Portugal
"N/A" (THESIS/DISSERTATION)
Fourteen (14) values
Affiliation

Science

Category
Host institution
Employer
2015 - 2024 Coordinating Researcher (Research) Universidade do Porto Faculdade de Farmácia, Portugal
2004 - 2014 Coordinating Researcher (Research) Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Teaching in Higher Education

Category
Host institution
Employer
2006/03/01 - Current Associate Professor (University Teacher) Universidade do Porto Faculdade de Farmácia, Portugal
1996/05/01 - 2006/02/28 Assistant Professor (University Teacher) Universidade do Porto Faculdade de Farmácia, Portugal
1991/03/01 - 1996/04/30 Assistant (University Teacher) Universidade do Porto Faculdade de Farmácia, Portugal
1987/01/01 - 1991/02/28 Trainee Assistant (University Teacher) Universidade do Porto Faculdade de Farmácia, Portugal
Projects

Grant

Designation Funders
2024 - Current Development and Validation of Fourier transform infrared (FT-IR) spectroscopy for rapid typing of multidrug resistant Escherichia coli and infection control
ESCMID Study Group Research Grant 2024
Researcher
Unidade de Ciências Biomoleculares Aplicadas, Portugal
2020/11/01 - 2024/10/31 Gard@GENUT&OAB: A targeted approach to overactive bladder syndrome through exploration of Gardnerella features
2020.05038.BD
Universidade do Porto Faculdade de Farmácia, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal
Universidade Nova de Lisboa Associação para a Inovação e Desenvolvimento da FCT
Ongoing
2022/01/01 - 2023/06/30 Exploring the bacteriocinome of human Enterococcus faecium paving avenues towards multidrug-resistant infections targeted therapies. 2022-2023.
Referência: EXPL/SAU-INF/0261/2021
Fundação para a Ciência e a Tecnologia
Ongoing
2019/12 - 2020/12 IR Bactyping: A bacterial type identification service to support epidemiology and infection control in real time
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Universidade do Porto
Ongoing
2018 - 2019 Enterobacteriaceae multirresistentes: avaliação de um programa de vigilância e controlo implementado num hospital terciário universitário
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal
Grupo de Infecção e Sepsis
Concluded
2015 - 2016 Discrimination of Salmonella non-typhoid high-risk clones by high- throughput spectroscopic techniques (MALDI-TOF and FTIR-ATR)
EFWISG Research Grant #8168
Principal investigator
REQUIMTE, Portugal
European Society of Clinical Microbiology and Infectious Diseases
Concluded
2014/03 - 2015/08 Optimization of MALDI-TOF MS for the assessment of bacterial cell viability towards a potential application in food industry
Researcher
REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2013 - 2014 Identification of the risk factors promoting the emergence of Enterococcus faecium at the interphase between humans, foodborne animals and the environment
ESCMID Grant 2013
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal

REQUIMTE, Portugal
European Society of Clinical Microbiology and Infectious Diseases
Concluded
2012/10 - 2013/12 The threat of multidrug resistance bacteria to public health: when aquacultures raise more than fish
Principal investigator
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Fundação para a Ciência e a Tecnologia

Banco Santander Totta
Concluded
2012 - 2013 Validation and optimization of high-througput methods (MALDI-TOF, FT-IR) to identify and track Escherichia coli clinically relevant clones
ESCMID Research Grant 2012
Researcher
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
European Society of Clinical Microbiology and Infectious Diseases
Concluded
2012 - 2013 Virulence and resistance features of Acinetobacter genetic lineages associated with biofilm-based urinary catheter-related infections
ESGB
Principal investigator
REQUIMTE, Portugal

Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
European Society of Clinical Microbiology and Infectious Diseases
Concluded
2012 - 2013 Evaluation of adhesion and biofilm-producing abilities of worldwide spread E. coli uropathogenic clonal complexes
IJUP
Researcher
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Fundação para a Ciência e a Tecnologia

Banco Santander Totta
Concluded
2010/06/01 - 2012 Characterization of widespread uropathogenic multidrug resistant Escherichia coli clones by using a combined approach of conventional genotypic methods and high-throughput technology
FP7-PEOPLE-2009-IEF call / Ref 255512 / ECOCHAR
Supervisor
European Commission
Concluded

Contract

Designation Funders
2024 - Current Role of water used in the growing, handling and processing of fruits, vegetables and herbs on the spread of antimicrobial resistance (AMR) (Acronym: WateResist)
OC/EFSA/BIOHAW/2023/01
Researcher
2023 - Current CLEANWATER: Exploring the microbial diversity of water supplysystems for early detection of emerging micropollutants
2022.02124.PTDC
Researcher
2021 - Current Exploring the bacteriocinome of human Enterococcus faecium paving avenues towards multidrug-resistant infections targeted therapies
Fundação para a Ciência e a Tecnologia
Other
2013 - Current Strategic Project - LA 6 - 2013-2014
PEst-C/EQB/LA0006/2013
Researcher
REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal

Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2021/01/01 - 2025/12/31 Institute for Health and Bioeconomy
LA/P/0140/2020
Universidade Nova de Lisboa Associação para a Inovação e Desenvolvimento da FCT, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Universidade Nova de Lisboa, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal

Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

INESC Microsistemas e Nanotecnologias, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2023/07 - 2025/01 Low-cost rapid diagnostics and typing for clinical microbiology using FTIR
INV-060596
Co-Principal Investigator (Co-PI)
Universidade do Porto Faculdade de Farmácia, Portugal
Bill & Melinda Gates Foundation Global Health Division
Ongoing
2020/01/01 - 2023/12/31 Applied Molecular Biosciences Unit
UIDP/04378/2020
UIDB/04378/2020
Universidade Nova de Lisboa Associação para a Inovação e Desenvolvimento da FCT, Portugal

Universidade do Porto, Portugal

Universidade Nova de Lisboa, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2020/10/01 - 2023/09/30 HEALTH UNORTE - HEALTH-UNORTE: Setting-up biobanks and regenerative medicine strategies to boost research in cardiovascular, musculoskeletal, neurological, oncological, immunological and infectious diseases
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal
Ongoing
2020/09/01 - 2023/08/31 AgriFood XXI - Desenvolvimento e consolidação da investigação do setor agro-alimentar no Norte de Portugal
Researcher
Ongoing
2021 - 2021 SAFE (Superbug Awareness for Education)
Researcher
EIT Health
Ongoing
2019/06 - 2020/06 SafestPoultry - SafestPoultry: understanding the impact of organic versus inorganic zinc and copper formulas use at farm level in the safe of marketed poultry-meat
IJUP - SafestPoultry
Researcher
Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal

Universidade do Porto Faculdade de Farmácia, Portugal
Universidade do Porto
Ongoing
2019/01/01 - 2019/12/31 Unidade de Ciências Biomoleculares Aplicadas
UID/Multi/04378/2019
154717UID
Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2019/01 - 2019/12 MicroMundo @ Uporto: an educational service-learning project for education in Microbiology
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
Universidade do Porto
Concluded
2016/11 - 2019/10 Development of a novel industrial process for safe, sustainable and higher quality foods, using biotechnology and cybernetic approach
ERA-IB-2/0002/2015
Principal investigator
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2016/04 - 2019/04 DESignBIOtecHealth - New Technologies for three Health Challenges of Modern Societies: Diabetes, Drug Abuse and Kidney Diseases
Researcher
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Comissao de Coordenacao e Desenvolvimento Regional do Norte
Concluded
2016/04 - 2019/04 FOODnanoHEALTH - Qualidade e Segurança Alimentar – uma abordagem (nano)tecnológica
NORTE-01-0145-FEDER-000011
Researcher
Universidade do Porto Faculdade de Ciências, Portugal
Comissao de Coordenacao e Desenvolvimento Regional do Norte
Concluded
2018/02 - 2019/01 Evaluation of production or processing control practices on the microbiological quality and safety of poultry meat with focus on Salmonella
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
Universidade do Porto
Concluded
2013/01 - 2015/06 Chelators for novel therapeutic strategies
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal
Comissao de Coordenacao e Desenvolvimento Regional do Norte
Concluded
2012/10 - 2013/12 Selection of antibiotic resistance bacteria: a role for mercury?
Researcher
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2012/09 - 2013/12 Resistance to biocides in Salmonella from Portugal: a multilayered approach
IJUP_2012_1
Researcher
Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
Universidade do Porto

Banco Santander Totta
Concluded
2010 - 2013/06 Is aquaculture raising more than fish? Detecting antimicrobial resistance in an understudied ecological niche
Principal investigator
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2012 - 2013 Validation and optimization of MALDI-TOF for identification and tracking of clinically relevant Escherichia coli clones and antibiotic resistance mechanisms: a translational approach
Researcher
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2011/01/01 - 2012/12/31 Strategic Project - LA 6 - 2011-2012
PEst-C/EQB/LA0006/2011
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2011/01 - 2012/12 Genotypic and high-troughput methodologies for tracing the emerging pathogen Escherichia alberti
Principal investigator
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Universidade do Porto
Concluded
2011/01 - 2012/12 Bacterial resistance to copper and antibiotics: two sides of the same problem in the anumal prodduction
Researcher
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Universidade do Porto
Concluded
2010/01 - 2011/12 Molecular and phenotypic characteristics of the emerging Salmonella enterica serotype 4,5,12:i- (monophasic variant of S.Typhimurium) from Portugal
PP-IJUP-2010-17
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
Universidade do Porto

Banco Santander Totta
Concluded
2009/09 - 2010/12 Structure of Salmonella nontyphoidal causing human infections by multilocus sequence typing
Researcher
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Universidade do Porto
Concluded
2009/01 - 2010/12 Are ready-to-eat salads an important vehicle of pathogenic and comensal bactéria resistant to antibiotics?
Researcher
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Universidade do Porto
Concluded
2005/09 - 2008/06 Indicators of swine industry pollution: antibiotics and antibiotic-resistant bacteria
Principal investigator
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2005/07 - 2007/12 Study of the factors implicated in the stability and dissemination of multi-resistant Enterococcus spp in different metagenomes
Principal investigator
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2005/01 - 2006/12 Ecology and molecular evolution of horizontal mobile elements implicated in the antibiotic resistance in the community and hospital environment from Portugal and Spain
Principal investigator
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Universidade do Porto
Concluded
2001 - 2002 Indicadores biológicos de contaminação por águas residuais hospitalares
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal
Fundação para a Ciência e a Tecnologia
Concluded

Other

Designation Funders
2019/07 - 2020/12 SafestPoultry: understanding the impact of organic versus inorganic zinc and copper formulas use at farm level in the safety of marketed poultry-meat
PP-IJUP2019-SOJA PORTUGAL-17
Universidade do Porto, Portugal
Concluded
Outputs

Publications

Book
  1. Sousa, JC; Machado, E; Novais, Carla; Peixe, L; Amorim, JM; Monteiro, N. Antibióticos - Volume I. Portugal. 2016.
    Published
Book chapter
  1. Antunes, P; Novais, Carla; Peixe, Luísa. "Food-to-Humans Bacterial Transmission". In Microbial Transmission, edited by American Society of Microbiology. ASM Press, 2019.
    Published • 10.1128/9781555819743
  2. Freitas, Ana R.; Novais, Carla; Peixe, Luísa; Coque, Teresa M.; Freitas, AR; Novais, Carla; Peixe, L; Coque, TM. "Isolation and Visualization of Plasmids from Gram-Positive Bacteria of Interest in Public Health". In Methods in Molecular Biology, 21-38. Springer US, 2019.
    10.1007/978-1-4939-9877-7_2
  3. Luís Meirinho-Soares; Peixe, L. "Fundamentos de Microbiologia. Esterilização, desinfeção e antissepsia.". In MICROBIOLOGIA MÉDICA, 83-89. Portugal: LIDEL, 2014.
    Published
  4. Coque, TM; Freitas, AR; Novais, Carla; Peixe, L; Baquero, F. "Mobile Genetic Elements and Lateral Genetic Transfer in Enterococci. In: Enterococcus and Safety". In Advances in Food Safety and Food Microbiology. Brasil: Nova Publishers, 2011.
    Published
  5. João Carlos Figueiredo Sousa; Peixe, Luísa. "Antibióticos anti-bacterianos". In Microbiologia. Portugal: Lidel, Edições Técnicas, 2010.
    Published
  6. Peixe, L. "Esterilização, antisepsia e desinfecção". In Microbiologia, 221-231. Portugal: Lidel, 1998.
    Published
  7. Maria São José Nascimento; João Carlos Sousa; Maria Isaura Sousa; Miguel Cabral; Eugénia Pinto; Helena Ferreira; Peixe, L. "Antimicrobianos". In Microbiologia. Portugal: Lidel, 1998.
    Published
Conference abstract
  1. Ana C. Almeida-Santos; Maria J. Teixeira; Duarte, Bárbara; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. "Diferenciação precisa de Enterococcus faecium e Enterococcus lactis em fezes de humanos saudáveis indica E. lactis como espécie predominante". Paper presented in Congresso Internacional de Microbiologia em Língua Portuguesa, 2022.
  2. Mafalda Magalhães; Marisa Ribeiro-Almeida; Andreia Rebelo; Diana Lopes; Sofia Paiva; Luísa Maria Vieira Peixe; Ângela Novais; Novais, Carla; Antunes, Patrícia. "Da quinta ao prato: diversidade e persistência de Klebsiella pneumoniae em sistemas de produção intensiva de frango". Paper presented in Microbiologia 2022 ¿ Congresso internacional de microbiologia em língua Portuguesa, 2022.
    Published
  3. Magalhães, Mafalda; Ribeiro-Almeida, M; Paiva, Sofia; Andreia Rebelo; Luísa Maria Vieira Peixe; Novais, Ângela; Novais, Carla; Antunes, Patrícia. "Diversity of copper tolerant and antibiotic resistant Klebsiella pneumoniae clones in poultry production using inorganic or organic copper feed formulations.". Paper presented in 15th Meeting of Younger Researchers of University of Porto (IJUP 2022), Porto, 2022.
    Published
  4. Teixeira, M. J.; Almeida-Santos, Ana C.; Duarte, B.; Novais, Carla; Dinis-Oliveira, Ricardo Jorge; Peixe, L; Freitas, Ana R. "Faecal carriage of enterococci by Portuguese healthy humans: preliminary data towards accurate species identification. RevSALUS - Revista Científica Internacional Da Rede Académica Das Ciências Da Saúde Da Lusofonia, 4(Sup), 125. (doi: https://doi.org/10.51126/revsalus.v4iSup.355)". Paper presented in I Congresso Internacional da TOXRUN, V Congresso da Associação Portuguesa de Ciências Forenses, XIX Jornadas Científicas de Ciências do Instituto Universitário de Ciências da Saúde, Porto, 2022.
    Published
  5. Ribeiro-Almeida, M; Monteiro, E; Ribeiro, S; Rebelo, Andreia; Pereira, B; Baptista, C; Peixe, L; Novais, Carla; Antunes, Patrícia. "Occurrence of colistin resistant and copper tolerant Enterobacteriaceae in 2-year colistin-free chicken farms using feed formula with inorganic or organic copper". Paper presented in 31st European Congress of Clinical Microbiology & Infectious Diseases (ECCMID), 2021.
  6. Andreia Rebelo; Duarte, Bárbara; Carina Baptista; Ribeiro-Almeida, M; Eulália Monteiro; Beatriz Pereira; Ribeiro, Sofia; et al. "Impact of organic and inorganic copper feed formulation in the selection of copper-tolerant and multidrug-resistant Enterococcus faecium from poultry farms and meat available to consumers". Paper presented in 31st European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Vienna, 2021.
    Published
  7. Ribeiro-Almeida, M; Magalhães, Mafalda; Paiva, Sofia; Andreia Rebelo; Luísa Maria Vieira Peixe; Novais, Carla; Novais, Ângela; Antunes, Patrícia. "From farm to fork: studying the diversity and persistence of colistin resistant Klebsiella pneumoniae in colistin-free chicken farms". Paper presented in Congress of Microbiology and Biotechnology (MICROBIOTEC 21 Webconference), 2021.
    Published
  8. Rebelo, Andreia; Duarte, Bárbara; Freitas, Ana R; Callejón, Ana; Peixe, L; Novais, Carla; Antunes, Patrícia. "Activity of peracetic acid against MDR Enterococcus faecium and non-typhoidal Salmonella from diverse epidemiological and genetic backgrounds". Paper presented in 30th European Congress of Clinical Microbiology and Infectious Diseases, Paris, 2020.
    Published
  9. Ribeiro-Almeida, M; Joana Freitas da Silva; Ribeiro, Sofia; Perovic, SU; Novais, Ângela; Peixe, L; Martins da Costa, Paulo; Antunes, Patrícia. "Emergence of mcr-1 among diverse multidrug-resistant Escherichia coli in gulls from a coastal city uncovers potentially underestimated transmission routes". Paper presented in 30th European Congress of Clinical Microbiology and Infectious Diseases, Paris, 2020.
    Accepted
  10. Finisterra, L; Novais, Carla; Duarte, Bárbara; Peixe, L; Freitas, Ana R. "Detection of linezolid-resistant enterococci carrying optrA and/or poxtA in raw-frozen dog foods commercialized in EU: trend or threath? Work selected for a Press Release". Paper presented in 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2020.
  11. Pereira, Ana Paula; Duarte, Bárbara; Antunes, Patrícia; Peixe, L; Freitas, Ana R; Novais, Carla. "Intact EfrEF operons seem essential for chlorohexidine tolerance among Enterococcus faecalis from different hosts and genetic backgrounds". Paper presented in 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2020.
    Accepted
  12. Elghaieb, Houyem; Novais, Carla; Duarte, Bárbara; Abbassi, M.S; Peixe, L. "Genomic characterisation of clinical Enterococcus faecium from Tunisia: remarkable identity with ampicillin-resistant strains obtained from animals/meat in the same area". Paper presented in 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2020.
    Accepted
  13. Perovic, SU; Ksiezarek, M; Rocha, J; Vale, L; Silva, C; Dinis, P; Antunes Lopes, T; Peixe, L. "Time to change microbiological approach to overactive bladder". Paper presented in 34th Annual EAU Congress, Barcelona, 2019.
    Published • DOI: https://doi.org/10.1016/S1569-9056(19)30077-6
  14. Andreia Rebelo; Mourão, Joana; Freitas, Ana R; Campos, Joana; Luísa Maria Vieira Peixe; Antunes, Patrícia; Novais, Carla. "Assess of acid tolerance of non-typhoidal Salmonella and Enterococcus faecium from different epidemiological and genetic backgrounds". Paper presented in Congress of Microbiology and Biotechnology (MICROBIOTEC 2019), Coimbra, 2019.
    Published
  15. Andreia Rebelo; Duarte, Bárbara; Ana Callejón; Luísa Maria Vieira Peixe; Novais, Carla; Antunes, Patrícia. "Peracetic Acid tolerance of MDR non-typhoidal Salmonella and Enterococcus faecium with diverse epidemiological and genetic background". Paper presented in Congress of Microbiology and Biotechnology (MICROBIOTEC 2019), Coimbra, 2019.
    Published
  16. Novais, Carla; Freitas, Ana R; Andreia Rebelo; Ferreira, Carolina; Duarte, Bárbara; Ribeiro, Sofia; Mourão, Joana; et al. "Raw chicken meat is a vehicle of ampicillin-multidrug-resistant Enterococcus faecium: is it a one health problem?". Paper presented in 1º Simpósio INIAV para a Segurança Alimentar - Rumo à Alimentação do Futuro, Vila do Conde, 2019.
    Published
  17. Antunes, Patrícia; Novais, Carla; Novais, Ângela; Grosso, Filipa; Ribeiro, Teresa G; Mourão, Joana; Perovic, Svetlana; et al. "Implementation of Micromundo@UPorto: an educacional project based on service-learning promoting antimicrobial resistance awareness among university and school students". Paper presented in Congress of Microbiology and Biotechnology (MICROBIOTEC 2019), Coimbra, 2019.
    Published
  18. Novais, Carla; Freitas, Ana R; Carina Ferreira; Christopher Scholes; Duarte, Bárbara; Ribeiro, Sofia; Mourão, Joana; et al. "High rates of ampicillin multidrug-resistant Enterococcus faecium in chicken meat from Portugal". Paper presented in 29th European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, 2019.
  19. Antunes, Patrícia; Novais, Carla; Freitas, Ana R; Ângela Novais; Grosso, Filipa; Ribeiro, Teresa G; Perovic, Svetlana; et al. "Implementation of MicroMundo@UPorto: a Pedagogical Project of Service-Learning for Education in Microbiology and Antimicrobial Resistance Awareness". Paper presented in 8th Congress of European Microbiologists - FEMS 2019, Glasgow, 2019.
    Published
  20. Carina Ferreira; Novais, Carla; Freitas, Ana R; Christopher Scholes; Duarte, Bárbara; Ribeiro, Sofia; Mourão, Joana; et al. "Widespread of ampicillin-multidrug-resistant Enterococcus faecium in raw chicken meat, Portugal". Paper presented in 12th Meeting of Younger Researchers of University of Porto, Porto, 2019.
    Published
  21. Ribeiro, Sofia; Mourão, Joana; Andreia Rebelo; Novais, Carla; Luísa Maria Vieira Peixe; Antunes, Patrícia. "Non-typhoidal Salmonella serotypes adapted to diverse stresses in a poultry meat processing unit in Portugal". Paper presented in 12th Meeting of Younger Researchers of University of Porto, Porto, 2019.
    Published
  22. Antunes, Patrícia; Mourão, Joana; Alves, Tatiana; Campos, Joana; Novais, Carla; Peixe, L. "Biocides and multi-drug resistance associated with the first extended-spectrum beta-lactamase-producing nontyphoidal Salmonella strain isolated in Portugal". Paper presented in 22nd European Congress of Clinical Microbiology and Infectious Diseases, London, 2012.
    Published
  23. Campos, Joana; Peixe, L; Mourão, Joana; Pires, João; Silva, Ana Cristina; Costa, Carmen; Nunes, Heloísa; et al. "Are ready-to-eat salads an important vehicle of pathogenic and commensal bacteria resistant to antibiotics?". Paper presented in 21st European Congress of Clinical Microbiology and Infectious Diseases, Milan, 2011.
    Published
  24. Antunes, Patrícia; Mourão, Joana; Dias, Laura; Ferreira, Liliana; Peixe, L. "Genetic dynamics of the emerging Salmonella enterica serotype 4,5,12:i- (monophasic variant of S. Typhimurium) in Portugal". Paper presented in 21st European Congress of Clinical Microbiology and Infectious Diseases, Milan, 2011.
    Published
Conference poster
  1. Ribeiro-Almeida, M; de Carvalho, André Pinto; Mourão, Joana; da Costa, Paulo Martins; Peixe, L; Antunes, Patrícia. "Long-term persistence of mcr-1 carrying Escherichia coli in intensive rabbit farms after colistin ban". Paper presented in MICROBIOTEC´23 - Portuguese Congress of Microbiology and Biotechnology, 2023.
  2. Teixera, Pedro; Sousa, Márcia; Grosso, Filipa; Ribeiro, Teresa; Peixe, L. "Gardnerella pangenome analysis: Insights into the phylogeny, resistome, virulome and host adaptation". Paper presented in Microbiotec, 2023.
  3. Mourão, Joana; Ribeiro-Almeida, M; Magalhães, Mafalda; Rebelo, Andreia; Novais, Carla; Peixe, L; Novais, Ângela; Antunes, Patrícia. "Genomic Diversity of Klebsiella pneumoniae in Chicken Production Chain: Antibiotic Resistance and Metal Tolerance Interplay". Paper presented in MICROBIOTEC´23 - Portuguese Congress of Microbiology and Biotechnology, 2023.
  4. Matos, Cátia; António Magalhães; Francisca Pereira; Duarte, Bárbara; Ana R. Freitas; Margarida Valente; Carolina Tavares; et al. "Uncovering seasonal variations in antimicrobial-resistant enterococcus diversity within Porto region's surface waters". Paper presented in XVIII Congresso Científico AEFFUP. Porto. Portugal, 2023.
  5. Andreia Rebelo; Duarte, Bárbara; Freitas, Ana R.; Agostinho Almeida; Rui Azevedo; Edgar Pinto; Luísa Maria Vieira Peixe; Antunes, Patrícia; Novais, Carla. "Uncovering the Effects of Copper Feed Supplementation on the Emergence of Copper-Tolerant and Antibiotic-Resistant Enterococcus in Poultry Production for Sustainable Environmental Practices". Paper presented in 6th International Conference on Enterococci (ICE-6), 2023.
  6. Ana C. Almeida-Santos; Duarte, Bárbara; Maria J. Teixeira; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. "Enterococcus lactis steals the spotlight: a predominant and highly bacteriocinogenic enterococci species obtained from contemporary faecal samples of healthy humans in Portugal". Paper presented in 6th International Conference on Enterococci, 2023.
  7. Ana C. Almeida-Santos; Novais, Carla; J. A. Paganini; Malbert R. C. Rogers; Weizhen Xu; Rob JL Willems; Corander, Jukka; et al. "Genomic Insights into Enterococcus faecalis: A Comprehensive Study of Population Structure, Plasmid Distribution, and Source Associations in Portugal". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
  8. Pereira, Ana P.; Antunes, Patrícia; Bierge, Paula; Willems, Rob J.L.; Corander, Jukka; Coque, Teresa M.; Pich, Oscar Q.; et al. "Unraveling Enterococcus Susceptibility to Quaternary Ammonium Compounds: genes, phenotypes, and the impact of environmental conditions". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
  9. Bierge, Paula; Miquel Sánchez-Osuna; Pereira, Ana P.; Ana R. Freitas; Antonio Casabella; Luísa Maria Vieira Peixe; Mateu Espasa; et al. "Unraveling the Enigma of Cephalosporin Susceptibility in Clinical Isolates of Enterococcus faecium: Genomic and Phenotypic Characterization of Unique Strains". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
  10. Rebelo, Andreia; Duarte, Bárbara; Marisa Almeida; Freitas, Ana R; Agostinho Almeida; Azevedo, Rui; Pinto, Edgar; et al. "Uncovering the Effects of Copper Feed Supplementation on the selection of Copper-Tolerant and Antibiotic-Resistant Enterococcus in Poultry Production for Sustainable Environmental Practices". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
  11. Ribeiro-Almeida, M; Carvalho, AP; Martins da Costa, Paulo; Luísa Maria Vieira Peixe; Antunes, Patrícia. Corresponding author: Ribeiro-Almeida, M. "Colistin resistant Klebsiella pneumoniae in intensive rabbit farms after colistin ban". Paper presented in FEMS 2023 ¿ Federation of European Microbiological Societies,, 2023.
  12. Matos, Cátia; Duarte, Bárbara; Rebelo, Andreia; Diana Lopes; Freitas, Ana R; Margarida Valente; Carolina Tavares; et al. "Occurrence and Diversity of Antimicrobial Resistance Bacteria in Rivers of Northern Portugal.". Paper presented in II Jornadas do Mestrado em Controlo de Qualidade. Porto, Portugal, 2023.
  13. Grosso, Filipa; Botelho, João; Silva, Liliana; Lood, Cédric; van Noort, Vera; Lavigne, Rob; Luísa Vieira Peixe. "Unraveling the Genetic Mechanisms of blaIMP-5 Dissemination in Acinetobacter Species: Insights and Unanswered Questions". Paper presented in 13th International Symposium on the Biology of Acinetobacter, 2023.
  14. Bierge, Paula; Miquel Sánchez-Osuna; Pereira, Ana P.; Rabanal, P.; Antonio Casabella; Mateu Espasa; Pérez D.; et al. "Genes de resistencia a ampicilina en movimiento: caracterización de un plásmido, similar al pRE25, de un aislado de Enterococcus faecium del torrente circulatório". Paper presented in XXVI Congreso Nacional de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica. Santiago de Compostela, Spain, 2023.
  15. Miquel Sánchez-Osuna; Bierge, Paula; Pereira, Ana P.; Antonio Casabella; Espasa, M.; Luísa Maria Vieira Peixe; Oriol Gasch; et al. "Genomas de Enterococcus con genes pbp5 redundantes: una perspectiva evolutiva de la diseminación de la resistencia a ampicilina". Paper presented in XXVI Congreso Nacional de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica. Santiago de Compostela, Spain, 2023.
  16. Mafalda Magalhães; Marisa Ribeiro-Almeida; Mourão, Joana; Andreia Rebelo; Diana Lopes; Sofia Paiva; Luísa Maria Vieira Peixe; Novais, Carla; Antunes, Patrícia. "From farm-to-fork: occurrence of persistent multidrug-resistant and copper-tolerant Klebsiella pneumoniae clone in poultry farms". Paper presented in 16ª Edição Encontro de Investigação Jovem da Universidade do Porto, 2023.
  17. Magalhães, Mafalda; Ribeiro-Almeida, M; Mourão, Joana; Rebelo, Andreia; Lopes, D; Peixe, L; Novais, Ângela; Novais, Carla; Antunes, Patrícia. "From farm-to-fork: occurrence of persistent multidrug-resistant and copper tolerant Klebsiella pneumoniae clones in poultry farms". Paper presented in 16th Meeting of Younger Researchers of the University of Porto (IJUP 2023), 2023.
  18. Cátia Matos; Duarte, Bárbara; Rebelo, Andreia; Diana Lopes; Freitas, Ana R; Margarida Valente; Carolina Tavares; et al. "Assessment of Antimicrobial Resistance Spread in Surface Aquatic Systems: A Study of Four Rivers in North Portugal". Paper presented in IJUP 2023 ¿ Encontro de Investigação Jovem, Porto, Portugal, 2023.
  19. Ana C. Almeida-Santos; Duarte, Bárbara; Maria J. Teixeira; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. "Novel insights into healthy humans faecal carriage of enterococci: Enterococcus lactis is as a dominant highly bacteriocinogenic species". Paper presented in II TOXRUN International Congress 2023, 2023.
  20. Andreia Rebelo; Duarte, Bárbara; Marisa Ribeiro-Almeida; Ana R. Freitas; Agostinho Almeida; Rui Azevedo; Edgar Pinto; et al. "Impact of organic and inorganic copper feed in the expansion of tcrB+ multidrug-resistant Enterococcus from poultry production". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases, 2023.
  21. Ana C. Almeida-Santos; Duarte, Bárbara; Maria João Teixeira ; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. Corresponding author: Maria João Teixeira. "An update on faecal carriage of Enterococcus species by healthy humans unveils E. lactis as a predominant highly bacteriocinogenic species that can harbor optrA". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases, 2023.
  22. Mourão, Joana; Ribeiro-Almeida, M; Magalhães, Mafalda; Rebelo, Andreia; Novais, Carla; Peixe, L; Novais, Ângela; Antunes, Patrícia. "In-depth genomic analysis of Klebsiella pneumoniae from intensive poultry production: an understudied non-clinical setting". Paper presented in 33rd ECCMID European Congress of Clinical Microbiology and Infectious Diseases, 2023.
  23. Magalhães, Mafalda; Ribeiro-Almeida, M; Mourão, Joana; Rebelo, Andreia; Lopes, D; Paiva, S; Peixe, L; et al. "From farm-to-fork: occurrence of multidrug-resistant and copper-tolerant Klebsiella pneumoniae successful clones in poultry farms". Paper presented in 33rd ECCMID European Congress of Clinical Microbiology and Infectious Diseases, 2023.
  24. Ana C. Almeida-Santos; Duarte, Bárbara; Tedim, Ana P.; Miguel D. Fernández-de-Bobadilla; Silva, L.M.; Ramos, H.; Coque, Teresa M; et al. "Vancomycin-resistant Enterococcus faecium circulating in a Portuguese hospital (2009-2021) challenges classical infection control". Paper presented in II Toxrun International Congress 2023. Porto, Portugal, 2023.
  25. Luís M. Sampaio; Cláudia-Ferreira, Ana; Prata, Joana C.; Rui M.S. Azevedo; Pacheco, Patricia ; Carla Campos; Novais, Carla; et al. "Nasal colonization by Staphylococcus aureus in Health Sciences students and analysis of risk factors under a One Health perspective". Paper presented in II Toxrun International Congress 2023. Porto, Portugal, 2023.
  26. Ana C. Almeida-Santos; Duarte, Bárbara; Maria João Teixeira ; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Ana R. Freitas. "An update on faecal carriage of Enterococcus species by healthy humans unveils E. lactis as a predominant highly bacteriocinogenic species that can harbor optrA. ePoster flash presentation.". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  27. Louise Roer; Hülya Kaya; Ana P. Tedim; Novais, Carla; Coque, Teresa M; Luísa Maria Vieira Peixe; Hasman, Henrik; Hammerum, Anette M.; Freitas, Ana R. "In silico extended virulence profiling of Enterococcus faecium and Enterococcus lactis isolates by use of whole-genome sequencing data". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  28. Bierge, Paula; Miquel Sánchez-Osuna; Pereira, Ana P.; Rabanal, P.; Antonio Casabella; Mateu Espasa; Daniel Pérez; et al. "Ampicillin resistance genes on the move: characterization of a pRE25-like::pbp5 plasmid from a bloodstream Enterococcus faecium". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhaga, Dinamarca, 2023.
  29. Ana C. Almeida-Santos; Duarte, Bárbara; Ana P. Tedim; Fernández-De-Bobadilla MD; Luís M Silva; Helena Ramos; Coque, Teresa M.; et al. "Characterization of vancomycin-resistant Enterococcus faecium from a central hospital over the last decade: fluctuating clones, plasmids and bacteriocins challenge classical infection control". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  30. Pereira, Ana P.; Antunes, Patrícia; Luísa Maria Vieira Peixe; Freitas, Ana R; Novais, Carla. "Different growth conditions occurring in the environment affect Enterococcus spp. susceptibility to quaternary ammonium compounds". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  31. Miquel Sánchez-Osuna; Bierge, Paula; Pereira, Ana P.; Antonio Casabella; Mateu Espasa; Luísa Maria Vieira Peixe; Oriol Gasch; et al. "Enterococcus genomes with redundant pbp5 genes: evolutionary insights into the ampicillin resistance dissemination". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  32. Ribeiro TG; Furlan, JPR; Mendez, Gema; Mancera, Luis; Novais, Ângela; Peixe, L. "FT-IR ATR spectroscopy for rapid and low-cost identification of clinically relevant Citrobacter species". Paper presented in 33rd European Congress of Clinical Microbiology & Infectious Diseases, 2023.
  33. Garcia, Andreia; Guimarães, António Mesquita; Ribeiro TG; Grosso, Filipa; Peixe, L. "Why bacteriocin-producing Lactobacillaceae do not protect women in the same manner?". Paper presented in 33rd European Congress of Clinical Microbiology & Infectious Diseases, 2023.
  34. Ana C. Almeida-Santos; Maria J. Teixeira; Duarte, Bárbara; Novais, Carla; Luísa Maria Vieira Peixe; Ana R. Freitas. "Update on the faecal carriage of enterococci by Portuguese healthy humans unveils Enterococcus lactis as a predominant species". Paper presented in Dia do laboratório de Microbiologia 2022, FFUP, 2022.
  35. Pereira, Ana P.; Antunes, Patrícia; Willems, R.J.; Corander, Jukka; Luísa Maria Vieira Peixe; Freitas, Ana R; Novais, Carla. "Enterococcus spp. are susceptible to Quaternary Ammonium Compounds used in disinfection and share tolerance genes with multiple bacterial taxa". Paper presented in Dia do laboratório de Microbiologia 2022, FFUP, 2022.
  36. Rebelo, Andreia; Duarte, Bárbara; Ferreira, Carolina; Mourão, Joana; Ribeiro, Sofia; Freitas, AR; Coque, TM; et al. "Chicken meat associated Enterococcus spp from 20 years apart overcomes multiple stresses of poultry production chain: antibiotics, copper and acids". Paper presented in Dia do Laboratório de Microbiologia, 2022.
  37. Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. "Manure-amended soils is a major source of greenhouses contamination with Escherichia coli carrying antibiotic resistance mcr and blaCTX-M genes of highest priority for public health". Paper presented in 13th IMMEM International Meeting on Microbial Epidemiological Markers, 2022.
  38. Almeida-Santos, Ana C.; Duarte, B.; Tedim, Ana P; Silva, L.M.; Ramos, H.; Coque, T.M.; Novais, C.; Peixe, L; Freitas, A.R.. "Clonal and plasmid dynamics of vancomycin-resistant Enterococcus faecium obtained from a single hospital institution over the last 20 years". Paper presented in 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII), 2022.
  39. Bierge, Paula; Pereira, Ana Paula; Rabanal, Patricia; Casabella, Antonio; Espasa, Mateu; Garcia de la Mària, Cristina; Peixe, L; et al. "Genomic characterization of Enterococcus faecium isolates with atypical antibiotic resistance and virulence profiles causing bloodstream infections.". Paper presented in 32nd European Congress of Clinical Microbiology & Infectious Diseases (Lisbon, Portugal), 2022.
  40. Ribeiro-Almeida, M; Magalhães, Tatiana Mafalda; Mourão, Joana; Paiva, Sofia; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes, Patrícia. "Raw pet food: new human transmission route for Salmonella 1,4,[5],12:i:- and mcr-1 genes in Europe". Paper presented in 32nd ECCMID European Congress of Clinical Microbiology and Infectious Diseases, 2022.
  41. Ribeiro-Almeida, M; Pinto de Carvalho, A; Ribeiro, R; da Costa, PM; Peixe, L; Antunes, Patrícia. "Occurrence of Escherichia coli carrying mcr in intensive rabbit farms after colistin ban". Paper presented in One Health EJP Annual Scientific Meeting, 2022.
  42. Pereira, A. P.; Antunes, P.; Peixe, L; Freitas, A.R.; Novais, C.. "Good activity of quaternary ammonium compounds against multidrug-resistant Enterococcus faecium of different clonal lineages and origins". Paper presented in 32nd European Congress of Clinical Microbiology and Infectious Diseases, 2022.
  43. Ana Beatriz Gonçalves; Ribeiro TG; Novais, Ângela; Peixe, L. "Affiliation of ACT, MIR and CMH ß-lactamases clarifies Enterobacter taxonomy and dispersion of these enzymes". Paper presented in 32nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2022.
  44. Cappelli, Elisabete Alves; Ksiezarek, M; Perovic, SU; Ribeiro TG; Peixe, L. "Genomic, virulence and antimicrobial resistance features of putative new species of the genus Corynebacterium in the female urogenital microbiota". Paper presented in 32nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2022.
  45. Sousa, Márcia; Ksiezarek, M; Perovic, SU; Ribeiro TG; Grosso, Filipa; Peixe, L. "Gardnerella in the urine microbiota of healthy women and patients diagnosed with overactive bladder: relevance insights by whole genome sequencing". Paper presented in 32nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2022.
  46. Garcia, Andreia; Ribeiro TG; Grosso, Filipa; Peixe, L. "Bacteriocin diversity, antimicrobial resistance genes and prophages repertoire in Lactobacillaceae from the female urinary microbiota". Paper presented in International Union of Microbiological Societies (IUMS 2022), 2022.
  47. Teixeira, M. J.; Almeida-Santos, Ana C.; Duarte, B.; Novais, C.; Dinis-Oliveira, Ricardo Jorge; Peixe, L; Freitas, Ana R. "Faecal carriage of enterococci by Portuguese healthy humans: preliminary data towards accurate species identification for forensic applications". Paper presented in I Congresso Internacional da TOXRUN & V Congresso Internacional da Associação Portuguesa, 2022.
  48. Pereira, Ana Paula; Antunes, Patrícia; Willems, Rob; Corander, Jukka; Peixe, L; Freitas, Ana R; Novais, Carla. "Quaternary Ammonium Compounds' activity and occurrence of tolerance associated genes among Enterococcus faecalis and Enterococcus faecium from diverse origins and timespans.". Paper presented in Microbiotec¿21 ¿ Congress of Microbiology and Biotecnology, 2021.
  49. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. "Do prado ao prato: retirada da colistina em explorações avícolas portuguesas resulta na redução de bactérias resistentes em carne de frango". Paper presented in 13th Annual Meeting PortFIR, 2021.
  50. Rebelo, Andreia; Duarte, Bárbara; Baptista, Carina; Ribeiro-Almeida, M; Monteiro, Eulália; Pereira, Beatriz; Ribeiro, Sofia; et al. "Impact of organic and inorganic copper feed formulations in the selection of copper tolerant and multidrug resistant Enterococcus faecium from poultry farms and meat available to consumers". Paper presented in 31st European Congress of Clinical Microbiology and Infectious Diseases, 2021.
  51. Ugarcina-Perovic, Svetlana; Ksiezarek, M; Gonçalves-Ribeiro, Teresa; Rocha, Joana; Cappelli Alves, Elisabete; Sousa, Márcia; Grosso, F; et al. "Effectiveness of MALDI-TOF MS for bacterial identification in the urogenital microbiome studies". Paper presented in World Microbe Forum, 2021.
  52. Sousa, Márcia; Ksiezarek, M; Ugarcina-Perovic, Svetlana; Grosso, Filipa; Gonçalves-Ribeiro, Teresa; Peixe, L. "Diversity and Dynamics of Gardnerella Species in Healthy Female Urogenital Microbiota". Paper presented in World Microbe Forum, 2021.
  53. Ribeiro-Almeida, M; Novais, Ângela; Monteiro, E; Ribeiro, S; Rebelo, Andreia; Baptista, C; Peixe, L; Novais, Carla; Antunes, Patrícia. "Diverse colistin resistant and copper tolerant Klebsiella pneumoniae global high-risk clones in poultry farms". Paper presented in World Microbe Forum / the FEMS2021 Congress, 2021.
  54. Ribeiro-Almeida, M; Novais, Ângela; Mourão, Joana; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Ugarcina-Perovic, Svetlana; et al. "MCR-1 in gulls is associated with diverse emerging zoonotic E. coli clonal lineages and plasmids enriched in antibiotic resistance genes, metal operons and virulence factors". Paper presented in World Microbe Forum 2021 (an ASM and FEMS collaboration), 2021.
  55. Ksiezarek, M; Ugarcina-Perovic, S; Rocha, J; Grosso, F; Peixe, L. "Long-term dynamics of the urinary microbiota of healthy European women". Paper presented in 1st Microbiome PT Summit, 2021.
  56. Ugarcina-Perovic, Svetlana; Ksiezarek, Magdalena; Rocha, Joana; Sousa, Márcia; Ribeiro TG; Grosso, Filipa; Peixe, L. "Urinary microbiome structure of healthy women: a comprehensive description supported in culturomics and amplicon sequencing". Paper presented in 1st Microbiome PT Summit, 2021.
  57. Sousa, Márcia; Ksiezarek, Magdalena; Grosso, Filipa; Gonçalves Ribeiro, Teresa; Peixe, L. "Gardnerella species in the healthy female urinary microbiome - a step forward in understanding their diversity and interactions". Paper presented in 1st Microbiome PT Summit, 2021.
  58. Ribeiro TG; Rocha, J; Ksiezarec, M; Grosso, F; Perovic, SU; Peixe, L. "Lactobacillus Species Combinations and Shifts Overtime in the Healthy Female Urogenital Tract". Paper presented in World Microbe Forum, 2021.
  59. Perovic, SU; Ksiezarec, M; Ribeiro TG; Grosso, F; Sousa, Márcia; Peixe, L. "Effectiveness of MALDI-TOF Mass Spectrometry for Bacterial Identification in the Urogenital Microbiome Studies". Paper presented in WORLD MICROBE FORUM, 2021.
  60. Grosso, F; Antunes, Patrícia; Freitas, Ana R; Ribeiro TG; Novais, Carla; Novais, Â; Peixe, L. "Communication strategies: Explaining the Antibiotics Resistance to High School Students in a One Health Perspective". Paper presented in Simposio MicroMundo 2021, 2021.
  61. Sousa, Márcia; Ksiezarek, Magdalena; Ugarcina-Perovic, Svetlana; Grosso, Filipa; Ribeiro TG; Peixe, L. "Occurrence and diversity of Gardnerella spp. in the midstream urine and vaginal swabs of asymptomatic women". Paper presented in 31st European Congress of Clinical Microbiology & Infectious Diseases (ECCMID 2021), 2021.
  62. Cappelli, Elisabete Alves; Ksiezarek, Magdalena; Ugarcina-Perovic, Svetlana; Ribeiro TG; Peixe, L. "Insights into Corynebacterium species diversity and stability in healthy urogenital microbiome". Paper presented in 31st European Congress of Clinical Microbiology & Infectious Diseases (ECCMID 2021), 2021.
  63. Sousa, Márcia; Ksiezarek, M; Perovic, Svetlana Ugarcina; Grosso, Filipa; Ribeiro TG; Peixe, L. "Two novel Gardnerella species isolated from urine of women". Paper presented in MICROBIOTEC21, 2021.
  64. Rebelo, Andreia; Duarte, Bárbara; Ferreira, C; Freitas, Ana R; Peixe, L; Antunes, Patrícia; Novais, Carla. "Exploring Enterococcus susceptibility to co-occurring stresses in the poultry meat production chain: antibiotics, copper, acidic pH and peracetic acid". Paper presented in Microbiotec21 - Congress of Microbiology and Biotechnology 2021 (online), 2021.
  65. Pereira, Ana Paula; Duarte, Bárbara; Antunes, Patrícia; Willems, R; Corander, J; Peixe, L; Freitas, Ana R; Novais, Carla. "Chlorhexidine and quaternary ammonium compounds activity against Enterococcus faecalis from diverse sources, timespans and clonal lineages". Paper presented in World Microbe Forum (online), 2021.
  66. Ksiezarek, M; Goncalves, T; Rocha, J; Grosso, F; Ugarcina-Perovic, S; Peixe, L. "Unveilling novel Limosilactobacillus species in the urogenital tract of healthy women". Paper presented in FEMS Online Conference on Microbiology 2020, 2020.
  67. Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Coque, Teresa M; Almeida, Agostinho; Peixe, L; Antunes, Patrícia; Novais, Carla. "Redundancy in ArsA proteins among enterococci makes this bacterial group a potential sentinel of arsenic pollution". Paper presented in One Health EJP Annual Scientific Meeting 2020 (OHEJP ASM 2020), 2020.
  68. Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Campos, Joana; Peixe, L; Antunes, Patrícia; Novais, Carla. "Assess of acid tolerance of non-typhoidal Salmonella and Enterococcus faecium from different sources and genetic backgrounds.". Paper presented in 19th Congress of Microbiology and Biotechnology 2019, University of Coimbra, Portugal., 2019.
  69. Novais, Carla; Freitas, Ana R; Rebelo, Andreia; Ferreira, Carolina; Duarte, Bárbara; Ribeiro, Sofia; Mourão, Joana; Antunes, Patrícia; Peixe, L. "Raw chicken meat is a vehicle of ampicillin-multidrug-resistant Enterococcus faecium: is it One Health problem?". Paper presented in 1º Simpósio INIAV para a Segurança Alimentar: ¿RUMO À ALIMENTAÇÃO DO FUTURO, 2019.
  70. Ribeiro, Sofia; Mourão, Joana; Campos, Joana; Ugarcina-Perovic, Svetlana; Novais, Ângela; Peixe, L; Antunes, Patrícia. "Widespread of colistin-resistant mcr-positive Enterobacteriaceae in fresh chicken meat, new food safety challenges and threats for one health". Paper presented in 1º Simpósio INIAV para a Segurança Alimentar: RUMO À ALIMENTAÇÃO DO FUTURO¿, 2019.
  71. Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Campos, Joana; Peixe, L; Antunes, Patrícia; Novais, Carla. "Comprehensive assessment of the ability of non-typhoidal Salmonella and Enterococcus faecium to survive acidic environments.". Paper presented in 8th Congress of European Microbiologists - FEMS 2019, Glasgow, Scotland., 2019.
  72. Ribeiro, Sofia; Rebelo, Andreia; Mourão, Joana; Novais, Carla; Peixe, L; Antunes, Patrícia. "Presence of non-typhoidal Salmonella adapted to diverse stresses in raw chicken meat, Portugal.". Paper presented in 8th Congress of European Microbiologists - FEMS 2019, Glasgow, Scotland., 2019.
  73. Botelho, João; Rocha J; Lood, Cédric; Carriço JA; Ribeiro TG; van Noort, Vera; Lavigne, Rob; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Pseudomonas catumbelensis sp. nov. is a novel species within the Pseudomonas putida phylogenetic group isolated from a septic tank in Angola and carrying several antimicrobial resistance genes". Paper presented in 8th Congress of European Microbiologists (FEMS 2019), 2019.
  74. Botelho, João; Rocha J; Lood, Cédric; Partridge, Sally R.; Carriço JA; Ribeiro TG; van Noort, Vera; et al. "Characterization of a large blaVIM-2-carrying plasmid in Pseudomonas portuensis sp. nov., a novel species within the Pseudomonas putida phylogenetic group". Paper presented in 8th Congress of European Microbiologists (FEMS 2019), 2019.
  75. Botelho, João; Roberts, AP; Mourão, Joana; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Integrative and conjugative elements, the neglected drivers of carbapenemase-encoding genes". Paper presented in ASM Microbe, 2019.
  76. Ribeiro, Sofia; Mourão, Joana; Rebelo, Andreia; Novais, Carla; Peixe, L; Antunes, Patrícia. "Detection of Salmonella serotypes adapted to diverse stresses in poultry meat at processing level in Portugal.". Paper presented in 29th European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, Netherlands., 2019.
  77. Antunes, Patrícia; Ribeiro, Sofia; Mourão, Joana; Rebelo, Andreia; Novais, Carla; Peixe, L. "Detection of Salmonella serotypes adapted to diverse stresses in poultry meat at the processing level in Portugal". Paper presented in 29th ECCMID European Congress of Clinical Microbiology and Infectious Diseases, 2019.
  78. Ribeiro, Sofia; Mourão, Joana; Campos, Joana; Perovic, Svetlana U; Novais, Ângela; Peixe, L; Antunes, Patrícia. "High occurrence of mcr-1 among diverse Enterobacteriaceae clones and plasmids in chicken meat alert for potential foodborne transmission of mcr-1 to humans". Paper presented in 29th ECCMID European Congress of Clinical Microbiology and Infectious Diseases, 2019.
  79. Botelho, João; Lood, Cédric; Partridge, Sally R.; van Noort, Vera; Lavigne, Rob; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Megaplasmids on the rise: combining sequencing approaches to fully resolve a carbapenemase-encoding plasmid in a novel Pseudomonas species". Paper presented in 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2019.
  80. Grosso, F; Botelho, João; Lira, A; Lameirão, A; Selaru, A; Abreu, G; Lopes, P; Mota, M; Peixe, L. Corresponding author: Grosso, F. "GES-6 Pseudomonas aeruginosa producers more common than expected questioning ceftolozane/tazobactam efficacy". Paper presented in 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2019.
  81. Rocha, Joana; Botelho, João Francisco Tomaz Santos; Ksiezarek, Magdalena; Ribeiro, Teresa Goncalves; Machado, Miguel Paulo; Carrico, Joao Andre; Peixe, Luisa Maria Vieira; et al. "Lactobacillus femina sp. nov., a new species of lactobacillus delbrueckii group". 2019.
  82. Ksiezarek, M; Perovic, SU; Rocha, J; Grosso, F; Peixe, L. "Female urinary microbiota: who´s coming, who´s going, and who´s staying". Paper presented in MicroBiotec 2019, 2019.
  83. Ksiezarek, M; Perovic, SU; Rocha, J; Grosso, F; Peixe, L. "Culturomics in Action – Advances in the Profiling of the Complex Healthy Female Urinary Microbiota". Paper presented in ASM Microbe 2019, 2019.
  84. Ksiezarek, M; Perovic, SU; Rocha, J; Moreira, M; Grosso, F; Peixe, L. "Vaginal and urinary microbiota in healthy women of reproductive age: greater pathogens sharing than previously thought". Paper presented in 29th European Congress of Clinical Microbiology & Infectious Diseases, 2019.
  85. Peixoto, B; Rodrigues, C; Ksiezarek, M; Perovic, SU; Rocha , J; Novais, Â; Peixe, L. "Escherichia coli and Klebsiella pneumoniae from urinary and intestinal microbiota: friends or foes?". Paper presented in Investigação Jovem da Universidade do Porto (IJUP 2019), 2019.
  86. Botelho, João; Roberts, AP; León-Sampedro, R; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "An in silico approach to explore the link between carbapenemase-producing Pseudomonas spp. and ICE". Paper presented in Antimicrobial Resistance ¿ Genomes, Big Data and Emerging Technologies, 2018.
  87. Botelho, João; Roberts, AP; León-Sampedro, R; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Carbapenemases on the move: it¿s good to be on ICE". Paper presented in Copenhagen Bioscience Conference 15 - Averting the post-antibiotic era, 2018.
  88. Ribeiro, Sofia; Mourão, Joana; Rebelo, Andreia; Novais, Carla; Peixe, L; Antunes, Patrícia. "Low detection of Salmonella in a poultry meat processing unit in the north of Portugal". Paper presented in 5º Simpósio Nacional - Promoção de uma Alimentação Saudável e Segura ¿ SPASS 2018, 2018.
  89. Mourão, Joana; Andreia Rebelo; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. "Successful multidrug-resistant and copper-tolerant Salmonella clones are enriched in arsenic tolerance genes". Paper presented in International Symposium Salmonella and Salmonellosis (I3S), 2018.
  90. Mourão, Joana; Campos, Joana; Ribeiro, Sofia; Peixe, L; Antunes, Patrícia. "Ongoing dissemination of mcr-1 genes in successful multidrug-resistant and copper-tolerant Salmonella clones". Paper presented in International Symposium Salmonella and Salmonellosis (I3S), 2018.
  91. Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Silveira, Eduarda; Coque, Teresa; Peixe, L; Antunes, Patrícia; et al. "Widespread copper, mercury and arsenic tolerance genes among multidrug-resistant Enterococcus spp. from human, animal and environmental origins.". Paper presented in 28th European Congress of Clinical Microbiology and Infectious Diseases, Madrid, Spain., 2018.
  92. Campos, Joana; Ribeiro, Sofia; Mourão, Joana; Peixe, L; Antunes, Patrícia. "Screening of novel plasmid-mediated colistin resistance genes mcr-3, mcr-4 and mcr-5". Paper presented in 28th ECCMID European Congress of Clinical Microbiology and Infectious Diseases, 2018.
  93. Botelho, João; Roberts, AP; Grosso, F; Peixe, L. "A wide array of integrative conjugative elements associated with carbapenemase-encoding genes in Pseudomonas genomes is disclosed by in silico analysis". Paper presented in 28th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2018.
  94. Perovic, SU; Rocha, J; Ksiezarek, M; Silva, I.; Martins, V; Grosso, F; Peixe, L. "Capturing the diversity of the female urinary microbiota through improved culturomic and metagenomic analysis". Paper presented in 28th European Congress of Clinical Microbiology and Infectious Diseases, 2018.
  95. Ksiezarek, M; Grosso, F; Martins, V; Silva, I.; Rocha, J; Perovic, SU; Peixe, L. "Urinary microbiota from healthy women as a reservoir of neonates´ pathogens". Paper presented in 28th European Congress of Clinical Microbiology and Infectious Diseases, 2018.
  96. Perovic, SU; Rocha, J; Ksiezarek, M; Grosso, F; Peixe, L. "Capturing the healthy female urinary microbiome diversity by improved metagenomic protocol". Paper presented in EMBL Symposium - The Human Microbiome, 2018.
  97. Mourão, Joana; Campos, Joana; Ribeiro, Sofia; Peixe, L; Antunes, Patrícia. "Colistin resistance mediated by mcr-1 in Salmonella: a new threat in the food chain". Paper presented in 5º Simpósio Nacional - Promoção de uma Alimentação Saudável e Segura ¿ SPASS 2018, 2018.
  98. Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Coque, Teresa; Almeida, Agostinho; Peixe, L; Antunes, Patrícia; Novais, Carla. "Distribution of Arsenic Tolerance Genes (arsA) among Enterococcus spp. from different sources, continents and timeframes (<1906-2015).". Paper presented in Congress of Microbiology and Biotechnology - MICROBIOTEC17, Porto, Portugal, 2017.
  99. Botelho, João; Grosso, F; Ribeiro TG; Peixe, L. Corresponding author: Botelho, João. "Whole-genome sequencing of a potentially new Pseudomonas species from a non-clinical niche in Angola uncovers a wide array of antimicrobial resistance genes and mobile genetic elements". Paper presented in MicroBiotec 17, 2017.
  100. Botelho, João; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Unraveling the genome of a Pseudomonas aeruginosa isolate belonging to the high-risk clone ST235 exposes a putative integrative conjugative element housing a blaGES-6 carbapenemase". Paper presented in 16th International Conference on Pseudomonas, 2017.
  101. Botelho, João; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Two decades of relentless blaVIM-2 producing Pseudomonas aeruginosa dissemination: the decisive role of mobile genetic elements and successful clones". Paper presented in 16th International Conference on Pseudomonas, 2017.
  102. Mourão, Joana; Rebelo, Andreia; Freitas, Ana R; Coque, Teresa; Almeida, Agostinho; Peixe, L; Antunes, Patrícia; Novais, Carla. "Spread of variable arsenic tolerance genes among Enterococcus spp. from different hosts, environments and geographical regions (<1906-2015).". Paper presented in 7th Congress of European Microbiologists - FEMS 2017, Valencia, Spain., 2017.
  103. Mourão, Joana; Rebelo, Andreia; Machado, Joana; Almeida, Agostinho; Peixe, L; Novais, Carla; Antunes, Patrícia. "Arsenic tolerance genes are frequent among Salmonella pig-associated clinically-relevant clones.". Paper presented in 7th Congress of European Microbiologists - FEMS 2017, Valencia, Spain., 2017.
  104. Botelho, João; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Whole-genome sequencing unveils a potentially new Pseudomonas species associated with Tn6372, a novel blaVIM-2-transposable element". Paper presented in 7th Congress of European Microbiologists (FEMS 2017), 2017.
  105. Botelho, João; Grosso, F; Mabrouk, Aymen; Peixe, L. Corresponding author: Botelho, João. "Complete nucleotide sequence of pJB58, a blaVIM-2-harboring plasmid from Pseudomonas aeruginosa". Paper presented in 7th Congress of European Microbiologists (FEMS 2017), 2017.
  106. Botelho, João; Grosso, F; Mabrouk, Aymen; Peixe, L. Corresponding author: Botelho, João. "Complete nucleotide sequence of an IncP-2 blaVIM-2-harboring megaplasmid from Pseudomonas aeruginosa". Paper presented in 27th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2017.
  107. Mabrouk, Aymen; Grosso, F; Botelho, João; Silva, Liliana; Achour, Wafa; Ben Hassen, Assia; Peixe, L. Corresponding author: Mabrouk, Aymen. "Regional clones and carbapenemases associated with carbapenem-resistant Acinetobacter baumannii in nosocomial settings in Tunis, Tunisia". Paper presented in 27th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2017.
  108. Rocha, J; Ksiezarek, M; Grosso, F; Perovic, SU; Peixe, L; Carriço, JA. "Methodological improvements on urine sample analysis: towards comprehensive understanding of urinary microbiome". Paper presented in ASM Microbe 2017, 2017.
  109. Silva, Liliana; Ksiezarek M; Grosso, F.; Peixe, L. "Carbapenem-resistant Acinetobacter baumannii in Portugal - clonal dynamics explained by WGS". Paper presented in MICROBIOTEC17 - Congress of Microbiology and Biotechnology 2017, 2017.
  110. Silva, Liliana; Ksiezarek M; Grosso, F.; Peixe, L. "Explaining the carbapenem-resistant Acinetobacter baumannii lineages dynamics by whole-genome and phenotypic analyses". Paper presented in Acinetobacter 2017 - 11th International Symposium on the biology of Acinetobacter, 2017.
  111. Silva, Liliana; Mourão, Joana; Ksiezarek M; Sousa C.; Grosso, F.; Peixe, L. "OXA-23 and OXA-58-encoding plasmids in emerging carbapenem-resistant Acinetobacter pittii". Paper presented in American Society for Microbiology, ASM Microbe 2017, 2017.
  112. Silva, Liliana; Rodrigues C.; Sousa, C.; Lira A.; Leão M.; Mota M.; Lopes P.; et al. "Real-time identification of carbapenem-resistant Klebsiella pneumoniae outbreak isolates by Fourier transform infrared (FTIR) spectroscopy". Paper presented in Science and Technology in Portugal Meeting, Ciência 2016, 2016.
  113. Freitas, Ana R; Sousa, C.; Bavlovic J; Silva, Liliana; Novais, Carla; Coque TM; Lopes, J.; Peixe, L. "Discrimination of vancomycin-resistant Enterococcus faecium clones by MLST (EBURST/BAPS) and spectroscopic techniques (MALDI-TOF and FTIR-ATR)". Paper presented in 11th International Meeting on Microbial Epidemiological Markers, IMMEM 2016, 2016.
  114. Mabrouk A; Grosso, F.; Silva, Liliana; Sousa, C.; Achour W; Hassen AB; Peixe, L. "Characterization of uncommon clones of carbapenemase-producing Acinetobacter baumannii from nosocomial settings in Tunis (Tunisia)". Paper presented in 11th International Meeting on Microbial Epidemiological Markers, IMMEM 2016, 2016.
  115. Botelho, João; Grosso, F; Rocha, C; Brilhante, M; Sousa, Clara; Peixe, L. Corresponding author: Botelho, João. "High-risk clones among carbapenemase-producing Pseudomonas aeruginosa in a Portuguese hospital". Paper presented in 25th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2015.
  116. Silva, Liliana; Grosso, F.; Gonçalves Ribeiro T; Branquinho R; Sousa, C.; Peixe, L. "Environmental reservoirs of Acinetobacter producing carbapenem-hydrolysing class D-ß-lactamases in Angola with evidence of human exposure". Paper presented in European Congress of Clinical Microbiology and Infectious Diseases, ECCMID 2015, 2015.
  117. Silva, Liliana; Grosso F.; Gonçalves Ribeiro T; Branquinho R; Sousa, C.; Peixe, L. "Diversity of non-clinical Acinetobacter species in a sub-saharan Africa region: evidence of carbapenem-hydrolysing class D-ß-lactamase producers". Paper presented in 14º Congresso Nacional de Microbiologia e Biotecnologia, MICROBIOTEC14, 2015.
  118. Pires, J; Novais, Ângela; Silva, Liliana; Campos, Joana; Botelho, João; Czobor, I; Gheorghe, I; Peixe, L. "Further validation of Blue-Carba, a recently described quick and reliable method for carbapenemase detection". Paper presented in 24th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2014.
  119. Sousa, Clara; Botelho, João; Silva, Liliana; Grosso, F; Lopes, João; Peixe, L. "MALDI-TOF MS and FTIR-ATR: Different Biomolecules and Distinct Outputs in Acinetobacter baumannii Typing". Paper presented in 24th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2014.
  120. Grosso, F.; Quinteira S.; Sousa, C.; Silva, Liliana; Ramos H.; Peixe, L. "IMP-5-producing multidrug- resistant Acinetobacter bereziniae: environmental or pathogen?". Paper presented in European Congress of Clinical Microbiology and Infectious Diseases, ECCMID2014, 2014.
  121. Silva, Liliana; Grosso, F.; Ramos H.; Sousa, C.; Peixe, L. "First description of Acinetobacter pittii clinical isolates harboring blaOXA-58 and blaOXA-23 in Portugal". Paper presented in European Congress of Clinical Microbiology and Infectious Diseases, ECCMID2014, 2014.
  122. Botelho, João; Sousa, Clara; Silva, Liliana; Grosso, F; Nemec, A.; Lopes, João; Peixe, L. Corresponding author: Botelho, João. "Acinetobacter calcoaceticus-Acinetobacter baumannii complex species depicted by MALDI-TOF MS and multivariate data analysis". Paper presented in MicroBiotec 13, 2013.
  123. Sousa, Clara; Botelho, João; Silva, Liliana; Grosso, F; Nemec, A.; Lopes, João; Peixe, L. "Improvement on the discrimination of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex species by a combined MALDI-TOF MS and chemometric approach". Paper presented in 10th International Meeting on Microbial Epidemiological Markers (IMMEM-10), 2013.
  124. Sousa, C.; Botelho J.; Silva, Liliana; Grosso, F.; Nemec, Alexandr; Lopes A.; Peixe, L. "Improvement on the discrimination of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex species Curriculum Vitae ¿ Liliana Silva 16 Curriculum Vitae ¿ Liliana Silva by a combined MALDI-TOF MS and chemometric approach". Paper presented in 10th International Meeting on Microbial Epidemiological Markers (IMMEM-10), 2013.
  125. Sousa, C.; Silva, Liliana; Grosso, F.; Lopes, J.; Peixe, L. "Fast Identification of clinically relevant Acinetobacter baumannii clones by Fourier Transform Infrared Spectroscopy". Paper presented in Acinetobacter 2013, 2013.
  126. Sousa, C.; Silva, Liliana; Alexandr Nemec; Lopes, J.; Peixe, L. "Rapid and accurate identification of the species of Acinetobacter calcoaceticus-Acinetobacter baumannii complex spp. by Fourier Transform Infrared Spectroscopy (FTIR)". Paper presented in European Congress of Clinical Microbiology and Infectious Diseases, ECCMID2013, 2013.
  127. Silva, Liliana; Sousa, C.; Grosso, F.; Peixe, L. "First description of Acinetobacter pittii clinical isolates harboring blaOXA-58 and blaOXA-23 in a Portuguese Hospital". Paper presented in 13º Congresso Nacional de Microbiologia e Biotecnologia, MICROBIOTEC13, 2013.
  128. Antunes, Patrícia; Mourão, Joana; Novais, Carla; Peixe, L. "Occurrence of pcoD, a gene conferring copper resistance in multidrug resistant Salmonella". Paper presented in 4th FEMS Congress of European Microbiologists, 2011.
Journal article
  1. Márcia Sousa; Magdalena Ksiezarek; Svetlana Ugarcina Perovic; Tiago Antunes-Lopes; Filipa Grosso; Teresa Gonçalves Ribeiro; Luísa Peixe. "Gardnerella pickettii sp. nov. (formerly Gardnerella genomic species 3) and Gardnerella greenwoodii sp. nov. (formerly Gardnerella genomic species 8) isolated from female urinary microbiome". International Journal of Systematic and Evolutionary Microbiology (2023): https://doi.org/10.1099/ijsem.0.006140.
    10.1099/ijsem.0.006140
  2. Andreia Rebelo; Agostinho Almeida; Luísa Peixe; Patrícia Antunes; Carla Novais. "Unraveling the Role of Metals and Organic Acids in Bacterial Antimicrobial Resistance in the Food Chain". Antibiotics (2023): https://doi.org/10.3390/antibiotics12091474.
    10.3390/antibiotics12091474
  3. Joana Mourão; Marisa Ribeiro-Almeida; Carla Novais; Mafalda Magalhães; Andreia Rebelo; Sofia Ribeiro; Luísa Peixe; et al. "From Farm to Fork: Persistence of Clinically Relevant Multidrug-Resistant and Copper-Tolerant Klebsiella pneumoniae Long after Colistin Withdrawal in Poultry Production". Microbiology Spectrum (2023): https://doi.org/10.1128/spectrum.01386-23.
    10.1128/spectrum.01386-23
  4. Carla Rodrigues; Val F. Lanza; Luísa Peixe; Teresa M. Coque; Ângela Novais; Ruth M. Hall. "Phylogenomics of Globally Spread Clonal Groups 14 and 15 of Klebsiella pneumoniae". Microbiology Spectrum (2023): https://doi.org/10.1128/spectrum.03395-22.
    10.1128/spectrum.03395-22
  5. João Pedro Rueda Furlan; Teresa Gonçalves Ribeiro; Ângela Novais; Hamilton Cabral; Luísa Peixe; Eliana Guedes Stehling. "Citrobacter meridianamericanus sp. nov., isolated from a soil sample". International Journal of Systematic and Evolutionary Microbiology (2023): https://doi.org/10.1099/ijsem.0.005720.
    10.1099/ijsem.0.005720
  6. Elisabete Alves Cappelli; Magdalena Ksiezarek; Jacqueline Wolf; Meina Neumann-Schaal; Teresa Gonçalves Ribeiro; Luísa Peixe. "Expanding the Bacterial Diversity of the Female Urinary Microbiome: Description of Eight New Corynebacterium Species". Microorganisms (2023): https://doi.org/10.3390/microorganisms11020388.
    10.3390/microorganisms11020388
  7. Miguel Peixoto de Almeida; Carla Rodrigues; Ângela Novais; Filipa Grosso; Nicolae Leopold; Luísa Peixe; Ricardo Franco; Eulália Pereira. "Silver Nanostar-Based SERS for the Discrimination of Clinically Relevant Acinetobacter baumannii and Klebsiella pneumoniae Species and Clones". Biosensors (2023): https://doi.org/10.3390/bios13020149.
    10.3390/bios13020149
  8. Luísa Peixe; Carla Novais; Ana C. Almeida-Santos; Ana Paula Pereira; Andreia Rebelo; Ana R. Freitas. "Alert for molecular data interpretation when using Enterococcus faecium reference strains reclassified as Enterococcus lactis". Gene 851 (2023): 146951-146951. http://dx.doi.org/10.1016/j.gene.2022.146951.
    10.1016/j.gene.2022.146951
  9. Mireya Viviana Belloso Daza; Ana C. Almeida-Santos; Carla Novais; Antónia Read; Valquíria Alves; Pier Sandro Cocconcelli; Ana R. Freitas; Luísa Peixe. "Distinction between Enterococcus faecium and Enterococcus lactis by a gluP PCR-Based Assay for Accurate Identification and Diagnostics". Microbiology Spectrum (2022): https://doi.org/10.1128/spectrum.03268-22.
    10.1128/spectrum.03268-22
  10. Svetlana Ugarcina Perovic; Magdalena Ksiezarek; Joana Rocha; Elisabete Alves Cappelli; Márcia Sousa; Teresa Gonçalves Ribeiro; Filipa Grosso; Luísa Peixe. Corresponding author: Luísa Peixe. "Urinary Microbiome of Reproductive-Age Asymptomatic European Women". Microbiology Spectrum (2022): https://doi.org/10.1128/spectrum.01308-22.
    10.1128/spectrum.01308-22
  11. Marisa Ribeiro-Almeida; Joana Mourão; Ângela Novais; Sofia Pereira; Joana Freitas-Silva; Sofia Ribeiro; Paulo Martins da Costa; Luísa Peixe; Patrícia Antunes. "High diversity of pathogenic Escherichia coli clones carrying mcr-1 among gulls underlines the need for strategies at the environment–livestock–human interface". Environmental Microbiology 24 10 (2022): 4702-4713. http://dx.doi.org/10.1111/1462-2920.16111.
    10.1111/1462-2920.16111
  12. Furlan, J.P.R.; Eliana Guedes Stehling; Eduardo Angelino Savazzi; Luísa Peixe; Ângela Novais. "High occurrence of colistin- and multidrug-resistant strains carrying mcr-1 or an underestimated mcr-1.26 allelic variant along a large Brazilian river". Journal of Global Antimicrobial Resistance 30 (2022): 127-129. http://dx.doi.org/10.1016/j.jgar.2022.05.030.
    10.1016/j.jgar.2022.05.030
  13. Ana P. Pereira; Patrícia Antunes; Rob Willems; Jukka Corander; Teresa M. Coque; Luísa Peixe; Ana R. Freitas; Carla Novais. "Evolution of Chlorhexidine Susceptibility and of the EfrEF Operon among Enterococcus faecalis from Diverse Environments, Clones, and Time Spans". Microbiology Spectrum 10 4 (2022): http://dx.doi.org/10.1128/spectrum.01176-22.
    10.1128/spectrum.01176-22
  14. Inês Martins-Oliveira; Blanca Pérez Viso; Ana Silva-Dias; Rosário Gomes; Luísa Peixe; Ângela Novais; Rafael Canton; Cidália Pina-Vaz. "Rapid Detection of Plasmid AmpC Beta-Lactamases by a Flow Cytometry Assay". Antibiotics 11 8 (2022): 1130-1130. http://dx.doi.org/10.3390/antibiotics11081130.
    10.3390/antibiotics11081130
  15. Magdalena Ksiezarek; Filipa Grosso; Teresa Gonçalves Ribeiro; Luísa Peixe. Corresponding author: Luísa Peixe. "Genomic diversity of genus Limosilactobacillus". Microbial Genomics (2022): https://doi.org/10.1099/mgen.0.000847.
    10.1099/mgen.0.000847
  16. Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Update of the list of QPS-recommended microbiological agents intentionally added to food or feed as notified to EFSA 16: suitability of taxonomic units notified to EFSA until March 2022". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7408.
    10.2903/j.efsa.2022.7408
  17. Claude Lambré; José Manuel Barat Baviera; Claudia Bolognesi; Andrew Chesson; Pier Sandro Cocconcelli; Riccardo Crebelli; David Michael Gott; et al. "Evaluation of the safety and efficacy of lactic acid to reduce microbiological surface contamination on carcases from kangaroos, wild pigs, goats and sheep". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7265.
    10.2903/j.efsa.2022.7265
  18. Ana R. Freitas; Ana P. Tedim; Ana Almeida Santos; Bárbara Duarte; Houyem Elghaieb; Mohamed Salah Abbassi; Abdennaceur Hassen; Carla Novais; Luísa Peixe. "High-Resolution Genotyping Unveils Identical Ampicillin-Resistant Enterococcus faecium Strains in Different Sources and Countries: A One Health Approach". Microorganisms (2022): https://www.mdpi.com/2076-2607/10/3/632.
    10.3390/microorganisms10030632
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  30. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed.¿Part 4: ß-Lactams: amoxicillin and penicillin V". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6855.
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  31. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 7: Amphenicols: florfenicol and thiamphenicol". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6859.
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  32. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 11: Sulfonamides". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6863.
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  33. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 12: Tetracyclines: tetracycline, chlortetracycline, oxytetracycline, and doxycycline". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6864.
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  34. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 1: Methodology, general data gaps and uncertainties". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6852.
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  35. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 8: Pleuromutilins: tiamulin and valnemulin". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6860.
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  36. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 13: Diaminopyrimidines: trimethoprim". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6865.
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  37. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed. Part 5: Lincosamides: lincomycin". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6856.
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  38. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed.¿Part 9: Polymyxins: colistin". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6861.
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  39. Ana Allende; Konstantinos Koutsoumanis; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Maximum levels of cross-contamination for 24 antimicrobial active substances in non-target feed.¿Part 2: Aminoglycosides/aminocyclitols: apramycin, paromomycin, neomycin and spectinomycin". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6853.
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  40. Rebelo, Andreia; Mourão, Joana; Freitas, Ana R.; Duarte, Bárbara; Silveira, Eduarda; Sanchez-Valenzuela, Antonio; Almeida, Agostinho; et al. "Diversity of metal and antibiotic resistance genes in Enterococcus spp. from the last century reflects multiple pollution and genetic exchange among phyla from overlapping ecosystems". Science of The Total Environment 787 (2021): 147548. http://dx.doi.org/10.1016/j.scitotenv.2021.147548.
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  42. Freitas, Ana R.; Finisterra, Liliana; Tedim, Ana P.; Duarte, Bárbara; Novais, Carla; Peixe, Luísa. "Linezolid- and Multidrug-Resistant Enterococci in Raw Commercial Dog Food, Europe, 2019–2020". Emerging Infectious Diseases 27 8 (2021): 2221-2224. http://dx.doi.org/10.3201/eid2708.204933.
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  43. Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 14: suitability of taxonomic units notified to EFSA until March 2021". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6689.
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  44. Konstantinos Koutsoumanis; Ana Allende; Avelino Álvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Role played by the environment in the emergence and spread of antimicrobial resistance (AMR) through the food chain". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6651.
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  46. Konstantinos Koutsoumanis; Ana Allende; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Alessandra De Cesare; et al. "Evaluation of the application for new alternative biodiesel production process for rendered fat including Category 1 animal by-products (BDI-RepCat® process, AT)". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6511.
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  50. Antunes, Patrícia; Novais, Carla; Novais, Ângela; Grosso, Filipa; Ribeiro, Teresa G; Mourão, Joana; Perovic, Svetlana; et al. "MicroMundo@UPorto: an experimental microbiology project fostering student's antimicrobial resistance awareness and personal and social development". FEMS Microbiology Letters (2021): http://dx.doi.org/10.1093/femsle/fnab016.
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    Published • 10.2903/j.efsa.2021.6377
  53. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Marianne Chemaly; Robert Davies; Alessandra De Cesare; et al. "The use of the so-called ‘superchilling’ technique for the transport of fresh fishery products". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6378.
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    Published
  55. Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Guidance on date marking and related food information: part 1 (date marking)". EFSA Journal (2020): https://data.europa.eu/doi/10.2903/j.efsa.2020.6306.
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  87. Elghaieb, Houyem; Tedim, Ana P; Abbassi, Mohamed S; Novais, Carla; Duarte, Bárbara; Hassen, Abdennaceur; Peixe, Luísa; Freitas, Ana R. "From farm to fork: identical clones and Tn6674-like elements in linezolid-resistant Enterococcus faecalis from food-producing animals and retail meat". Journal of Antimicrobial Chemotherapy 75 1 (2019): 30-35. http://dx.doi.org/10.1093/jac/dkz419.
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  90. León-Sampedro, Ricardo; del Campo, Rosa; Rodriguez-Baños, Mercedes; Lanza, Val F.; Pozuelo, María José; Francés-Cuesta, Carlos; Tedim, Ana P.; et al. "Phylogenomics of Enterococcus faecalis from wild birds: new insights into host-associated differences in core and accessory genomes of the species". Environmental Microbiology 21 8 (2019): 3046-3062. http://dx.doi.org/10.1111/1462-2920.14702.
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  95. Peixe, L. "Multicenter Study of Cronobacter sakazakii Infections in Humans, Europe, 2017.". Emerging infectious diseases (2019): http://europepmc.org/articles/PMC6390735.
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    Published • 10.3390/pathogens8010019
  98. João Botelho; Cédric Lood; Sally R. Partridge; Vera van Noort; Rob Lavigne; Filipa Grosso; Luísa Peixe. "Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain". Emerging Microbes & Infections (2019): https://doi.org/10.1080/22221751.2019.1648182.
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  100. Herman, Lieve; Chemaly, Marianne; Cocconcelli, Pier Sandro; Fernandez, Pablo; Klein, Günter; Peixe, Luisa; Prieto, Miguel; et al. "The qualified presumption of safety assessment and its role in EFSA risk evaluations: 15 years past". FEMS Microbiology Letters 366 1 (2018): http://dx.doi.org/10.1093/femsle/fny260.
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  101. Botelho, João; Roberts, Adam P.; León-Sampedro, Ricardo; Grosso, Filipa; Peixe, Luísa. "Carbapenemases on the move: it’s good to be on ICEs". Mobile DNA 9 1 (2018): http://dx.doi.org/10.1186/s13100-018-0141-4.
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  103. Vittorio Silano; José Manuel Barat Baviera; Claudia Bolognesi; Beat Johannes Brüschweiler; Andrew Chesson; Pier Sandro Cocconcelli; Riccardo Crebelli; et al. "Evaluation of the safety and efficacy of the organic acids lactic and acetic acids to reduce microbiological surface contamination on pork carcasses and pork cuts". EFSA Journal (2018): https://data.europa.eu/doi/10.2903/j.efsa.2018.5482.
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  104. Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; et al. "Public health risks associated with food-borne parasites". EFSA Journal (2018): https://data.europa.eu/doi/10.2903/j.efsa.2018.5495.
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  105. Peixe, L. "Fourier transform infrared spectroscopy: unlocking fundamentals and prospects for bacterial strain typing.". European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology (2018): https://doi.org/10.1007/s10096-018-3431-3.
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    10.1016/j.ijfoodmicro.2018.07.005
  107. Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Lieve Herman; et al. "Hazard analysis approaches for certain small retail establishments and food donations: second scientific opinion". EFSA Journal (2018): https://data.europa.eu/doi/10.2903/j.efsa.2018.5432.
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  108. Bender, Jennifer K.; Cattoir, Vincent; Hegstad, Kristin; Sadowy, Ewa; Coque, Teresa M.; Westh, Henrik; Hammerum, Anette M.; et al. "Update on prevalence and mechanisms of resistance to linezolid, tigecycline and daptomycin in enterococci in Europe: Towards a common nomenclature". Drug Resistance Updates 40 (2018): 25-39. http://dx.doi.org/10.1016/j.drup.2018.10.002.
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  109. Oravcová, Veronika; Peixe, Luísa; Coque, Teresa M.; Novais, Carla; Francia, Maria V.; Literák, Ivan; Freitas, Ana R.. "Wild corvid birds colonized with vancomycin-resistant Enterococcus faecium of human origin harbor epidemic vanA plasmids". Environment International 118 (2018): 125-133. http://dx.doi.org/10.1016/j.envint.2018.05.039.
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  110. Novais, Ângela; Moniz, Tânia; Rebelo, Ana Rita; Silva, Ana M.G.; Rangel, Maria; Peixe, Luísa. "New fluorescent rosamine chelator showing promising antibacterial activity against Gram-positive bacteria". Bioorganic Chemistry 79 (2018): 341-349. http://dx.doi.org/10.1016/j.bioorg.2018.05.013.
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  112. Peixe, L. "Inflow water is a major source of trout farming contamination with Salmonella and multidrug resistant bacteria.". The Science of the total environment (2018): https://doi.org/10.1016/j.scitotenv.2018.06.143.
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  115. Peixe, L. "Dissemination of Staphylococcus epidermidis ST22 With Stable, High-Level Resistance to Linezolid and Tedizolid in the Greek-Turkish Region (2008-2016).". Infection control and hospital epidemiology (2018): https://doi.org/10.1017/ice.2018.5.
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  117. Peixe, L. "Unravelling the genome of a Pseudomonas aeruginosa isolate belonging to the high-risk clone ST235 reveals an integrative conjugative element housing a blaGES-6 carbapenemase.". The Journal of antimicrobial chemotherapy (2018): http://europepmc.org/abstract/med/29029083.
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  119. Peixe, L. "Two decades of blaVIM-2-producing Pseudomonas aeruginosa dissemination: an interplay between mobile genetic elements and successful clones". Journal of Antimicrobial Chemotherapy (2018):
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  120. Peixe, L. "Virulence genes, capsular and plasmid types of multidrug-resistant CTX-M(-2, -8, -15) and KPC-2-producing Klebsiella pneumoniae isolates from four major hospitals in Brazil". Diagnostic Microbiology and Infectious Diseases (2018): http://www.sciencedirect.com/science/article/pii/S0732889318300129.
    10.1016/j.diagmicrobio.2018.01.007
  121. Peixe, L. "Detection of optrA in the African continent (Tunisia) within a mosaic Enterococcus faecalis plasmid from urban wastewaters.". The Journal of antimicrobial chemotherapy (2017): http://europepmc.org/abstract/med/29029072.
    10.1093/jac/dkx321
  122. Peixe, L. "High rates of colonization by ampicillin-resistant enterococci in residents at long-term care facilities in Porto, Portugal.". International journal of antimicrobial agents (2017): http://europepmc.org/abstract/med/29175606.
    10.1016/j.ijantimicag.2017.11.007
  123. Peixe, L. "Distribution of putative virulence markers in Enterococcus faecium: towards a safety profile review.". The Journal of antimicrobial chemotherapy (2017): http://europepmc.org/abstract/med/29149293.
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  124. Peixe, L. "Different Escherichia coli B2-ST131 clades (B and C) producing extended-spectrum ß-lactamases (ESBL) colonizing residents of Portuguese nursing homes.". Epidemiology and infection (2017): http://europepmc.org/abstract/med/29039274.
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  125. Peixe, L. "Imported poultry meat as a source of extended-spectrum cephalosporin-resistant CMY-2-producing Salmonella Heidelberg and Salmonella Minnesota in the European Union, 2014-2015.". International journal of antimicrobial agents (2017): http://europepmc.org/abstract/med/28919197.
    10.1016/j.ijantimicag.2017.09.006
  126. Peixe, L. "Citrobacter portucalensis sp. nov., isolated from an aquatic sample.". International journal of systematic and evolutionary microbiology (2017): http://europepmc.org/abstract/med/28857032.
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    10.1017/ice.2017.144
  128. Peixe, L. "The complete nucleotide sequence of an IncP-2 megaplasmid unveils a mosaic architecture comprising a putative novel blaVIM-2-harbouring transposon in Pseudomonas aeruginosa.". The Journal of antimicrobial chemotherapy (2017): http://europepmc.org/abstract/med/28505370.
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  130. Vuotto, C; Grosso, F; Longo, F; Balice, MP; Carvalho de Barros, M; Peixe, Luísa; Donelli, G. "Biofilm-Forming Ability and Clonality in Acinetobacter baumannii Strains Isolated from Urine Samples and Urinary Catheters in Different European Hospitals.". Advances in experimental medicine and biology 1057 (2017): 73-83. http://europepmc.org/abstract/med/28639245.
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  133. Peixe, L. "Rapid detection of high-risk Enterococcus faecium clones by matrix-assisted laser desorption ionization time-of-flight mass spectrometry.". Diagnostic microbiology and infectious disease (2017): http://europepmc.org/abstract/med/28109550.
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  134. Peixe, L. "High occurrence and unusual serotype diversity of non-typhoidal Salmonella in non-clinical niches, Angola.". Epidemiology and infection (2017): http://europepmc.org/abstract/med/28004619.
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  137. Peixe, L. "Elucidating constraints for differentiation of major human Klebsiella pneumoniae clones using MALDI-TOF MS.". European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology (2017): http://europepmc.org/abstract/med/27812805.
    10.1007/s10096-016-2812-8
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  139. Peixe, L. "Multilevel population genetic analysis of vanA and vanB Enterococcus faecium causing nosocomial outbreaks in 27 countries (1986-2012).". The Journal of antimicrobial chemotherapy (2016): http://europepmc.org/abstract/med/27530756.
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  140. Peixe, L. "Tolerance to multiple metal stressors in emerging non-typhoidal MDR Salmonella serotypes: a relevant role for copper in anaerobic conditions.". The Journal of antimicrobial chemotherapy (2016): http://europepmc.org/abstract/med/27118781.
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  141. Peixe, L. "Efficient transmission of IncFIIY and IncL plasmids and Klebsiella pneumoniae ST101 clone producing OXA-48, NDM-1 or OXA-181 in Bucharest hospitals.". International journal of antimicrobial agents (2016): http://europepmc.org/abstract/med/27378198.
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  142. Peixe, L. "Exploring non-hospital-related settings in Angola reveals new Acinetobacter reservoirs for blaOXA-23 and blaOXA-58.". International journal of antimicrobial agents (2016): http://europepmc.org/abstract/med/27374745.
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  145. Mourão, J.; Rae, J.; Silveira, E.; Freitas, A.R.; Coque, T.M.; Peixe, L.; Antunes, P.; Novais, C.. "Relevance of tcrYAZB operon acquisition for Enterococcus survival at high copper concentrations under anaerobic conditions". Journal of Antimicrobial Chemotherapy 71 2 (2016): 560-563. http://www.scopus.com/inward/record.url?eid=2-s2.0-84959881732&partnerID=MN8TOARS.
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  148. Mendes, A.C.; Rodrigues, C.; Pires, J.; Amorim, J.; Ramos, M.H.; Novais, Â.; Peixe, L.. "Importation of fosfomycin resistance fosA3 gene to Europe". Emerging Infectious Diseases 22 2 (2016): 346-348. http://www.scopus.com/inward/record.url?eid=2-s2.0-84955089604&partnerID=MN8TOARS.
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  152. Peixe, L. "KPC-3-Producing Klebsiella pneumoniae in Portugal Linked to Previously Circulating Non-CG258 Lineages and Uncommon Genetic Platforms (Tn4401d-IncFIA and Tn4401d-IncN).". Frontiers in Microbiology (2016): http://europepmc.org/abstract/med/27446040.
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  153. Peixe, L. "Co-diversification of Enterococcus faecium Core Genomes and PBP5: Evidences of pbp5 Horizontal Transfer.". Frontiers in microbiology (2016): http://europepmc.org/abstract/med/27766095.
  154. Rodrigues, Carla; Machado, Elisabete; Pires, João; Ramos, Helena; Novais, Ângela; Peixe, Luísa; Peixe, L. "Increase of widespread A, B1 and D Escherichia coli clones producing a high diversity of CTX-M-types in a Portuguese hospital". Future Microbiology 10 7 (2015): 1125-1131. http://dx.doi.org/10.2217/fmb.15.38.
    10.2217/fmb.15.38
  155. Gheorghe I; Novais Â; Grosso F; Rodrigues C; Chifiriuc MC; Lazar V; Peixe L. "Snapshot on carbapenemase-producing Pseudomonas aeruginosa and Acinetobacter baumannii in Bucharest hospitals reveals unusual clones and novel genetic surroundings for blaOXA-23.". (2015): http://europepmc.org/abstract/med/25630639.
    10.1093/jac/dku527
  156. Campos J; Gil J; Mourão J; Peixe L; Antunes P. "Ready-to-eat street-vended food as a potential vehicle of bacterial pathogens and antimicrobial resistance: An exploratory study in Porto region, Portugal.". (2015): http://europepmc.org/abstract/med/25910073.
    10.1016/j.ijfoodmicro.2015.04.016
  157. Branquinho R; Klein G; Kämpfer P; Peixe LV. "The status of the species Bacillus aerophilus and Bacillus stratosphericus. Request for an Opinion.". (2015): http://europepmc.org/abstract/med/25479956.
    10.1099/ijs.0.000004
  158. Mourão J; Novais C; Machado J; Peixe L; Antunes P. "Metal tolerance in emerging clinically relevant multidrug-resistant Salmonella enterica serotype 4,[5],12:i:- clones circulating in Europe.". (2015): http://europepmc.org/abstract/med/25816978.
    10.1016/j.ijantimicag.2015.01.013
  159. Silveira, Eduarda; Marques, Patrice; Freitas, Ana R.; Mourão, Joana; Coque, Teresa M.; Antunes, Patrícia; Peixe, Luísa; Novais, Carla. "A hospital sewage ST17 Enterococcus faecium with a transferable Inc18-like plasmid carrying genes coding for resistance to antibiotics and quaternary ammonium compounds (qacZ)". Journal of Global Antimicrobial Resistance 3 1 (2015): 49-51. http://dx.doi.org/10.1016/j.jgar.2014.11.005.
    10.1016/j.jgar.2014.11.005
  160. Martins, E.; Novais, C.; Freitas, A.R.; Dias, A.R.; Ribeiro, T.G.; Antunes, P.; Peixe, L.. "Filling the map for antimicrobial resistance in sub-Saharan Africa: Ampicillin-resistant Enterococcus from non-clinical sources in Angola". Journal of Antimicrobial Chemotherapy 70 10 (2015): 2914-2916. http://www.scopus.com/inward/record.url?eid=2-s2.0-84943775182&partnerID=MN8TOARS.
    10.1093/jac/dkv172
  161. Novais, A.; Brilhante, M.; Pires, J.; Peixe, L.. "Evaluation of the recently launched rapid carb blue kit for detection of carbapenemase-producing gram-negative bacteria". Journal of Clinical Microbiology 53 9 (2015): 3105-3107. http://www.scopus.com/inward/record.url?eid=2-s2.0-84940062681&partnerID=MN8TOARS.
    10.1128/JCM.01170-15
  162. Ribeiro, T.G.; Novais, A.; Branquinho, R.; Machado, E.; Peixe, L.. "Phylogeny and comparative genomics unveil independent diversification trajectories of qnrB and genetic platforms within particular Citrobacter species". Antimicrobial Agents and Chemotherapy 59 10 (2015): 5951-5958. http://www.scopus.com/inward/record.url?eid=2-s2.0-84942291913&partnerID=MN8TOARS.
    10.1128/AAC.00027-15
  163. Grosso, F.; Silva, L.; Sousa, C.; Ramos, H.; Quinteira, S.; Peixe, L.. "Extending the reservoir of bla IMP-5: The emerging pathogen Acinetobacter bereziniae". Future Microbiology 10 10 (2015): 1609-1613. http://www.scopus.com/inward/record.url?eid=2-s2.0-84945292993&partnerID=MN8TOARS.
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  164. Peixe, L. "Unsuitability of MALDI-TOF MS to discriminate Acinetobacter baumannii clones under our routine experimental conditions". Frontiers in Microbiology (2015):
    10.3389/fmicb.2015.00481
  165. Branquinho R; Meirinhos-Soares L; Carriço JA; Pintado M; Peixe LV. "Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones.". (2014): http://europepmc.org/abstract/med/25230950.
    10.1111/1574-6941.12426
  166. Peixe, L. "Characterization of a new genetic environment associated with GES-6 carbapenemase from a Pseudomonas aeruginosa isolate belonging to the high-risk clone ST235". Journal of Antimicrobial Chemotherapy 2014 (2014): http://jac.oxfordjournals.org/cgi/content/full/dku391? ijkey=PpEqovsM6di3j7k&keytype=ref.
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  167. Branquinho, R.; Sousa, C.; Osorio, H.; Meirinhos-Soares, L.; Lopes, J.; Carrico, J. A.; Busse, H.-J.; et al. "Bacillus invictae sp. nov., isolated from a health product". INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 64 Pt 11 (2014): 3867-3876. http://dx.doi.org/10.1099/ijs.0.067850-0.
    10.1099/ijs.0.067850-0
  168. Rodrigues C; Machado E; Ramos H; Peixe L; Novais A. "Expansion of ESBL-producing Klebsiella pneumoniae in hospitalized patients: A successful story of international clones (ST15, ST147, ST336) and epidemic plasmids (IncR, IncFIIK).". (2014): http://europepmc.org/abstract/med/25190354.
    10.1016/j.ijmm.2014.08.003
  169. Sousa C; Silva L; Grosso F; Nemec A; Lopes J; Peixe L. "Discrimination of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex species by Fourier transform infrared spectroscopy.". (2014): http://europepmc.org/abstract/med/24563251.
    10.1007/s10096-014-2078-y
  170. Novais Â; Sousa C; de Dios Caballero J; Fernandez-Olmos A; Lopes J; Ramos H; Coque TM; Cantón R; Peixe L. "MALDI-TOF mass spectrometry as a tool for the discrimination of high-risk Escherichia coli clones from phylogenetic groups B2 (ST131) and D (ST69, ST405, ST393).". (2014): http://europepmc.org/abstract/med/24599708.
    10.1007/s10096-014-2071-5
  171. Sousa C; Botelho J; Silva L; Grosso F; Nemec A; Lopes J; Peixe L. "MALDI-TOF MS and chemometric based identification of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex species.". (2014): http://europepmc.org/abstract/med/24877727.
    10.1016/j.ijmm.2014.04.014
  172. Mourão J; Machado J; Novais C; Antunes P; Peixe L. "Characterization of the emerging clinically-relevant multidrug-resistant Salmonella enterica serotype 4,[5],12:i:- (monophasic variant of S. Typhimurium) clones.". (2014): http://europepmc.org/abstract/med/25022446.
    10.1007/s10096-014-2180-1
  173. Barros M; Branquinho R; Grosso F; Peixe L; Novais C. "Linezolid-Resistant Staphylococcus epidermidis, Portugal, 2012.". (2014): http://europepmc.org/abstract/med/24751182.
    10.3201/eid2005.130783
  174. Silveira E; Freitas AR; Antunes P; Barros M; Campos J; Coque TM; Peixe L; Novais C. "Co-transfer of resistance to high concentrations of copper and first-line antibiotics among Enterococcus from different origins (humans, animals, the environment and foods) and clonal lineages.". (2014): http://europepmc.org/abstract/med/24343895.
    10.1093/jac/dkt479
  175. Freitas F; Machado E; Ribeiro TG; Novais Â; Peixe L. "Long-term dissemination of acquired AmpC ß-lactamases among Klebsiella spp. and Escherichia coli in Portuguese clinical settings.". (2014): http://europepmc.org/abstract/med/24096741.
    10.1007/s10096-013-1983-9
  176. Sousa C; Silva L; Grosso F; Lopes J; Peixe L. "Development of a FTIR-ATR based model for typing clinically relevant Acinetobacter baumannii clones belonging to ST98, ST103, ST208 and ST218.". (2014): http://europepmc.org/abstract/med/24727403.
    10.1016/j.jphotobiol.2014.02.015
  177. Rodrigues C; Novais Â; Machado E; Peixe L. "Detection of VIM-34, a novel VIM-1 variant identified in the intercontinental ST15 Klebsiella pneumoniae clone.". (2014): http://europepmc.org/abstract/med/23934739.
    10.1093/jac/dkt314
  178. Gomes-Neves, E.; Antunes, P.; Manageiro, V.; Gärtner, F.; Caniça, M.; da Costa, J.M.C.; Peixe, L.. "Clinically relevant multidrug resistant Salmonella enterica in swine and meat handlers at the abattoir". Veterinary Microbiology 168 1 (2014): 229-233. http://www.scopus.com/inward/record.url?eid=2-s2.0-84890793290&partnerID=MN8TOARS.
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  179. Branquinho R; Sousa C; Lopes J; Pintado ME; Peixe LV; Osório H. "Differentiation of Bacillus pumilus and Bacillus safensis using MALDI-TOF-MS.". (2014): http://europepmc.org/abstract/med/25314655.
    10.1371/journal.pone.0110127
  180. Rocha J; Coelho FJ; Peixe L; Gomes NC; Calado R. "Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools.". (2014): http://europepmc.org/abstract/med/25384534.
    10.1038/srep06986
  181. Branquinho, Raquel; Sousa, Clara; Osório, Hugo; Meirinhos-Soares, Luís; Lopes, João; Carriço, João A.; Busse, Hans-Jurgen; et al. "Bacillus invictae sp. nov., isolated from a health Product". (2014): http://hdl.handle.net/10400.14/17543.
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  182. Branquinho, R.; Sousa, C.; Lopes, J.; Pintado, M.E.; Peixe, L.V.. "Correction: Differentiation of Bacillus pumilus and Bacillus safensis using MALDI-TOF-MS". PLoS ONE 9 12 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84919764883&partnerID=MN8TOARS.
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  183. Pires J; Novais A; Peixe L. "Blue-carba, an easy biochemical test for detection of diverse carbapenemase producers directly from bacterial cultures.". (2013): http://europepmc.org/abstract/med/24108615.
    10.1128/JCM.01634-13
  184. Rodrigues C; Machado E; Peixe L; Novais A. "IncI1/ST3 and IncN/ST1 plasmids drive the spread of blaTEM-52 and blaCTX-M-1/-32 in diverse Escherichia coli clones from different piggeries.". (2013): http://europepmc.org/abstract/med/23719233.
    10.1093/jac/dkt187
  185. Novais, C.; Freitas, A.R.; Silveira, E.; Antunes, P.; Silva, R.; Coque, T.M.; Peixe, L.. "Spread of multidrug-resistant enterococcus to animals and humans: An underestimated role for the pig farm environment". Journal of Antimicrobial Chemotherapy 68 12 (2013): 2746-2754. http://www.scopus.com/inward/record.url?eid=2-s2.0-84887534043&partnerID=MN8TOARS.
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  186. Sousa, C.; Novais, Â.; Magalhães, A.; Lopes, J.; Peixe, L.. "Diverse high-risk B2 and D Escherichia coli clones depicted by Fourier Transform Infrared Spectroscopy". Scientific Reports 3 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84888265708&partnerID=MN8TOARS.
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  187. Campos, J.; Mourão, J.; Pestana, N.; Peixe, L.; Novais, C.; Antunes, P.. "Microbiological quality of ready-to-eat salads: An underestimated vehicle of bacteria and clinically relevant antibiotic resistance genes". International Journal of Food Microbiology 166 3 (2013): 464-470. http://www.scopus.com/inward/record.url?eid=2-s2.0-84884469629&partnerID=MN8TOARS.
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  188. Machado, E.; Coque, T.M.; Cantón, R.; Sousa, J.C.; Peixe, L.. "Commensal Enterobacteriaceae as reservoirs of extended-spectrum beta-lactamases, integrons, and sul genes in Portugal". Frontiers in Microbiology 4 APR (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84884258701&partnerID=MN8TOARS.
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  189. Liebana, E.; Carattoli, A.; Coque, T.M.; Hasman, H.; Magiorakos, A.-P.; Mevius, D.; Peixe, L.; et al. "Public health risks of enterobacterial isolates producing extended-spectrum ß-lactamases or AmpC ß-lactamases in food and food-producing animals: An EU perspective of epidemiology, analytical methods, risk factors, and control options". Clinical Infectious Diseases 56 7 (2013): 1030-1037. http://www.scopus.com/inward/record.url?eid=2-s2.0-84875029941&partnerID=MN8TOARS.
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  190. Novais, Â.; Vuotto, C.; Pires, J.; Montenegro, C.; Donelli, G.; Coque, T.M.; Peixe, L.. "Diversity and biofilm-production ability among isolates of Escherichia coli phylogroup D belonging to ST69, ST393 and ST405 clonal groups". BMC Microbiology 13 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84879096132&partnerID=MN8TOARS.
    10.1186/1471-2180-13-144
  191. Antunes, P.; Mourão, J.; Alves, T.; Campos, J.; Novais, C.; Novais, Â.; Peixe, L.. "Salmonella enterica serotype Bovismorbificans, a new host for CTX-M-9". International Journal of Antimicrobial Agents 41 1 (2013): 91-93. http://www.scopus.com/inward/record.url?eid=2-s2.0-84871652073&partnerID=MN8TOARS.
    10.1016/j.ijantimicag.2012.09.009
  192. Freitas, A.R.; Novais, C.; Tedim, A.P.; Francia, M.V.; Baquero, F.; Peixe, L.; Coque, T.M.. "Microevolutionary Events Involving Narrow Host Plasmids Influences Local Fixation of Vancomycin-Resistance in Enterococcus Populations". PLoS ONE 8 3 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84875538138&partnerID=MN8TOARS.
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  193. Sousa, Clara; Grosso, Filipa; Meirinhos-Soares, Luís; Peixe, Luísa; Lopes, João. "Identification of carbapenem-resistantAcinetobacter baumanniiclones using infrared spectroscopy". Journal of Biophotonics 7 5 (2012): 287-294. http://dx.doi.org/10.1002/jbio.201200075.
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  194. Novais, Â.; Rodrigues, C.; Branquinho, R.; Antunes, P.; Grosso, F.; Boaventura, L.; Ribeiro, G.; Peixe, L.. "Spread of an OmpK36-modified ST15 Klebsiella pneumoniae variant during an outbreak involving multiple carbapenem-resistant Enterobacteriaceae species and clones". European Journal of Clinical Microbiology and Infectious Diseases 31 11 (2012): 3057-3063. http://www.scopus.com/inward/record.url?eid=2-s2.0-84867994178&partnerID=MN8TOARS.
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  195. Novais, C.; Freitas, A.R.; Silveira, E.; Baquero, F.; Peixe, L.; Roberts, A.P.; Coque, T.M.. "A tet(S/M) hybrid from CTn6000 and CTn916 recombination". Microbiology (United Kingdom) 158 11 (2012): 2710-2711. http://www.scopus.com/inward/record.url?eid=2-s2.0-84868327165&partnerID=MN8TOARS.
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  196. Queiroz, M.L.P.; Antunes, P.; Mourão, J.; Merquior, V.L.C.; Machado, E.; Peixe, L.V.. "Characterization of extended-spectrum beta-lactamases, antimicrobial resistance genes, and plasmid content in Escherichia coli isolates from different sources in Rio de Janeiro, Brazil". Diagnostic Microbiology and Infectious Disease 74 1 (2012): 91-94. http://www.scopus.com/inward/record.url?eid=2-s2.0-84865296281&partnerID=MN8TOARS.
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  197. Novais, C.; Freitas, A.R.; Silveira, E.; Baquero, F.; Peixe, L.; Roberts, A.P.; Coque, T.M.. "Different genetic supports for the tet(S) gene in enterococci". Antimicrobial Agents and Chemotherapy 56 11 (2012): 6014-6018. http://www.scopus.com/inward/record.url?eid=2-s2.0-84868026610&partnerID=MN8TOARS.
    10.1128/AAC.00758-12
  198. Grosso, F.; Quinteira, S.; Poirel, L.; Novais, Â.; Peixe, L.. "Role of common bla OXA-24/OXA-40-carrying platforms and plasmids in the spread of OXA-24/OXA-40 among Acinetobacter species clinical isolates". Antimicrobial Agents and Chemotherapy 56 7 (2012): 3969-3972. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862529498&partnerID=MN8TOARS.
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  199. Novais, Â.; Pires, J.; Ferreira, H.; Costa, L.; Montenegro, C.; Vuotto, C.; Donelli, G.; Coque, T.M.; Peixe, L.. "Characterization of globally spread Escherichia coli ST131 isolates (1991 to 2010)". Antimicrobial Agents and Chemotherapy 56 7 (2012): 3973-3976. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862526675&partnerID=MN8TOARS.
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  200. Gomes-Neves, E.; Antunes, P.; Tavares, A.; Themudo, P.; Cardoso, M.F.; Gärtner, F.; Costa, J.M.; Peixe, L.. "Salmonella cross-contamination in swine abattoirs in Portugal: Carcasses, meat and meat handlers". International Journal of Food Microbiology 157 1 (2012): 82-87. http://www.scopus.com/inward/record.url?eid=2-s2.0-84861726787&partnerID=MN8TOARS.
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  201. Grosso, F.; Carvalho, K.R.; Quinteira, S.; Ramos, A.; Carvalho-Assef, A.P.D.; Asensi, M.D.; Peixe, L.. "OXA-23-producing Acinetobacter baumannii: A new hotspot of diversity in Rio de Janeiro?". Journal of Antimicrobial Chemotherapy 66 1 (2011): 62-65. http://www.scopus.com/inward/record.url?eid=2-s2.0-78650408697&partnerID=MN8TOARS.
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  202. Macedo, A.S.; Freitas, A.R.; Abreu, C.; Machado, E.; Peixe, L.; Sousa, J.C.; Novais, C.. "Characterization of antibiotic resistant enterococci isolated from untreated waters for human consumption in Portugal". International Journal of Food Microbiology 145 1 (2011): 315-319. http://www.scopus.com/inward/record.url?eid=2-s2.0-79951549354&partnerID=MN8TOARS.
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  203. Martins, J.; Peixe, L.; Vasconcelos, V.M.. "Unraveling Cyanobacteria Ecology in Wastewater Treatment Plants (WWTP)". Microbial Ecology 62 2 (2011): 241-256. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051670803&partnerID=MN8TOARS.
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  204. Antunes, P.; Mourão, J.; Pestana, N.; Peixe, L.. "Leakage of emerging clinically relevant multidrug-resistant Salmonella clones from pig farms". Journal of Antimicrobial Chemotherapy 66 9 (2011): 2028-2032. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051703059&partnerID=MN8TOARS.
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  205. Grosso, F.; Quinteira, S.; Peixe, L.. "Understanding the dynamics of imipenem-resistant Acinetobacter baumannii lineages within Portugal". Clinical Microbiology and Infection 17 8 (2011): 1275-1279. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960669969&partnerID=MN8TOARS.
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  206. Freitas, A.R.; Novais, C.; Correia, R.; Monteiro, M.; Coque, T.M.; Peixe, L.. "Non-susceptibility to tigecycline in enterococci from hospitalised patients, food products and community sources". International Journal of Antimicrobial Agents 38 2 (2011): 174-176. http://www.scopus.com/inward/record.url?eid=2-s2.0-79959766865&partnerID=MN8TOARS.
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  207. Freitas, A.R.; Coque, T.M.; Novais, C.; Hammerum, A.M.; Lester, C.H.; Zervos, M.J.; Donabedian, S.; et al. "Human and swine hosts share vancomycin-resistant Enterococcus faecium CC17 and CC5 and Enterococcus faecalis CC2 clonal clusters harboring Tn1546 on indistinguishable plasmids". Journal of Clinical Microbiology 49 3 (2011): 925-931. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952327503&partnerID=MN8TOARS.
    10.1128/JCM.01750-10
  208. Antunes, P.; Mourão, J.; Machado, J.; Peixe, L.. "First description of qnrS1-IncN plasmid in a ST11 Salmonella Enteritidis clinical isolate from Portugal". Diagnostic Microbiology and Infectious Disease 69 4 (2011): 463-465. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952425613&partnerID=MN8TOARS.
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  209. Extremina, C.I.; Costa, L.; Aguiar, A.I.; Peixe, L.; Fonseca, A.P.. "Optimization of processing conditions for the quantification of enterococci biofilms using microtitre-plates". Journal of Microbiological Methods 84 2 (2011): 167-173. http://www.scopus.com/inward/record.url?eid=2-s2.0-79251647502&partnerID=MN8TOARS.
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  210. Robin, F.; Delmas, J.; Machado, E.; Bouchon, B.; Peixe, L.; Bonnet, R.. "Characterization of the novel CMT enzyme TEM-154". Antimicrobial Agents and Chemotherapy 55 3 (2011): 1262-1265. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952335003&partnerID=MN8TOARS.
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  211. Rocha, J.; Peixe, L.; Gomes, N.C.M.; Calado, R.. "Cnidarians as a source of new marine bioactive compounds - An overview of the last decade and future steps for bioprospecting". Marine Drugs 9 10 (2011): 1860-1886. http://www.scopus.com/inward/record.url?eid=2-s2.0-80054901242&partnerID=MN8TOARS.
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  212. Freitas AR; Novais C; Ruiz-Garbajosa P; Coque TM; Peixe L; Freitas, A. R.; Novais, C.; et al. "Dispersion of Multidrug-Resistant Enterococcus faecium Isolates Belonging to Major Clonal Complexes in Different Portuguese Settings.". Applied and Environmental Microbiology 75 14 (2010): 4904-4908. http://europepmc.org/abstract/PMC/PMC2813016.
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  213. Ratkai, C.; Nagy, E.; Peixe, L.; Bertalan, V.; Hajdú, E.. "Isolation and characterization of an imported extremely-resistant Pseudomonas aeruginosa producing three different extended-spectrum ß-lactamases and hyperproducing two multidrug-efflux pumps". Journal of Infection 61 6 (2010): 511-512. http://www.scopus.com/inward/record.url?eid=2-s2.0-78649582363&partnerID=MN8TOARS.
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  214. Martins, J.; Peixe, L.; Vasconcelos, V.. "Cyanobacteria and bacteria co-occurrence in a wastewater treatment plant: Absence of allelopathic effects". Water Science and Technology 62 8 (2010): 1954-1962. http://www.scopus.com/inward/record.url?eid=2-s2.0-78751480693&partnerID=MN8TOARS.
    10.2166/wst.2010.551
  215. Freitas, A.R.; Tedim, A.P.; Novais, C.; Ruiz-Garbajosa, P.; Werner, G.; Laverde-Gomez, J.A.; Cantón, R.; et al. "Global spread of the hylEfm colonization-virulence gene in megaplasmids of the Enterococcus faecium CC17 polyclonal subcluster". Antimicrobial Agents and Chemotherapy 54 6 (2010): 2660-2665. http://www.scopus.com/inward/record.url?eid=2-s2.0-77952594598&partnerID=MN8TOARS.
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Magazine article
  1. Neto Ferreira, H; Miller, GH; Vaz, MJ; Queiros, ML; Peixe, L; Silva, GC; Cardoso, O; Leitão, R; Sousa, JC. "Molecular characterization of the bacterial resistance to the aminoglycoside antibiotics in hospital isolated strains", Arquivos de Medicina , 1994, http://www. scopus.com/inward/record.url?eid=2-s2.0-0028031417&partnerID=MN8TOARS.
  2. Vaz, M.J.M.; Sousa, J.C.; Torres Pereira, A.; Neto Ferreira, H.; Peixe, L.M.. "Characterization of beta-lactamases produced by pathogenic strains of S. aureus", Arquivos de Medicina, 1993, http://www.scopus.com/inward/record.url?eid=2-s2.0-0027369269&partnerID=MN8TOARS.
  3. Sousa, J.C.; Queiros, M.; Peixe, L.V.; Neto, H.M.; Santos, F.. "In vitro behaviour of pathogenic strains of Haemophyllus influenzae face to beta-lactamic antibiotics", Arquivos de Medicina, 1992, http://www.scopus.com/inward/record.url?eid=2-s2.0-0027056030&partnerID=MN8TOARS.
  4. Sousa, J.C.; Aguiar, A.; Cabral, M.; Peixe, M.L.; Queiros, M.L.; Pinto, M.E.; Carneiro, G.; Vasques, M.T.. "High frequence of fecal E. coli strains resistents to beta-lactamic antibiotics in lactents submitted to amoxycillin therapy", Arquivos de Medicina, 1990, http://www.scopus.com/inward/record.url?eid=2-s2.0-0025010907&partnerID=MN8TOARS.
Manual
  1. Peixe, L. Guia básico de MicroMundo@UPorto: EM BUSCA DE MICRORGANISMOS PRODUTORES DE NOVOS ANTIBIÓTICOS EM HABITATS NATURAIS. Portugal. 2018.
    Published
Newsletter article
  1. Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia. "Gull droppings undermine efforts to control spread of colistin-resistance genes", The Microbiologist, 2022, https://www.the-microbiologist.com/news/gull-droppings-undermine-efforts-to-control-spread-of-colistin-resistance-genes/339.article.
Newspaper article
  1. Rebelo, Andreia; Duarte, Bárbara; Carolina Ferreira; Mourão, Joana; Sofia Ribeiro; Freitas, Ana R; Coque, Teresa M; et al. "Enterococcus spp. from chicken meat collected 20 years apart overcome multiple stresses occurring in the poultry production chain: Antibiotics, copper and acids", Int J Food Microbiol ., 2023, https://www.sciencedirect.com/science/article/pii/S0168160522004536?via%3Dihub.
  2. EFSA Panel on Biological Hazards (BIOHAZ); Koutsoumanis, Kostas; Peixe LV. "Evaluation of a multi-step catalytic co-processing hydrotreatment for the production of renewable fuels using Category 3 animal fat and used cooking oils.", EFSA J., 2022, doi: 10.2903/j.efsa.2022.7591.
  3. EFSA Panel on Biological Hazards (BIOHAZ); Koutsoumanis, Konstantinos; Peixe, Luísa; et al. "Transmission of antimicrobial resistance (AMR) during animal transport", EFSA Journal, 2022, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9593722/.
Online resource
  1. Ana Almeida-Santos; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. BioProject ID PRJNA1055432 of NCBI whole genome sequences (21 Enterococcus faecium, 13 E. lactis, 10 E. faecalis, one E. thailandicus). 2023. https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1055432.
  2. Louise Roer; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. Enterococcus faecium VirulenceFinder (46 Enterococcus faecium genomes). 2023. https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA796949.
  3. Ana Almeida-Santos; Belloso Daza, Mireya Viviana; Novais, Carla; Antonia Read; Alves, Valquíria; Luísa Maria Vieira Peixe; Cocconcelli, Pier Sandro; Ana Raquel Freitas. BioProject PRJNA851953 (whole genome sequences of Enterococcus lactis). 2023. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA851953.
  4. Mourão, Joana; Ribeiro-Almeida, M; Novais, Carla; Magalhães, Mafalda; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Ângela; Antunes, Patrícia. Occurrence of Klebsiella pneumoniae from poultry-associated environment. Whole genome shotgun sequencing project of 20 Klebsiella pneumoniae genomes deposited at DDBJ/ENA/GenBank. BioProject PRJEB60418. 2023. https://www.ebi.ac.uk/ena/browser/view/PRJEB60418.
  5. Mourão, Joana; Magalhães, Mafalda; Ribeiro-Almeida, M; Andreia Rebelo; Novais, Carla; Peixe, L; Novais, Ângela; Antunes, Patrícia. WGS analysis of Klebsiella pneumoniae from intensive poultry production chain. Whole genome shotgun sequencing project of 48 Klebsiella pneumoniae genomes deposited at DDBJ/ENA/GenBank. BioProject PRJEB62836. 2023. https://www.ebi.ac.uk/ena/browser/view/PRJEB62836.
  6. Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate L9.4, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5245AA. 2022. https://enterobase.warwick.ac.uk/.
  7. Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL6.1, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5246AA. 2022. https://enterobase.warwick.ac.uk/.
  8. Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL8.6, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5247AA. 2022. https://enterobase.warwick.ac.uk/.
  9. Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL13.8, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5248AA. 2022. https://enterobase.warwick.ac.uk/.
  10. Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL13.9, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5249AA. 2022. https://enterobase.warwick.ac.uk/.
  11. Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL16.6, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5250AA. 2022. https://enterobase.warwick.ac.uk/.
  12. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P26_C8, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSMM000000000.1. 2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSMM000000000.1.
  13. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P22_C1, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSMJ000000000.1. 2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSMJ000000000.1.
  14. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P15_C34, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSMI000000000.1. 2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSMI000000000.1.
  15. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P37_C3, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSML000000000.1. 2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSML000000000.1.
  16. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P2_C27, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSMP000000000.1. 2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSMP000000000.1.
  17. Ribeiro-Almeida, M; Magalhães, Tatiana Mafalda; Mourão, Joana; Paiva, Sofia; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes, Patrícia. Salmonella enterica 1,4,[5],12:i:- isolate R54_S100, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: SAL_LB4229AA. 2022. https://enterobase.warwick.ac.uk/.
  18. Ribeiro-Almeida, M; Magalhães, Tatiana Mafalda; Mourão, Joana; Paiva, Sofia; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes, Patrícia. Escherichia coli isolate R26_1_100, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA9777AA. 2022. https://enterobase.warwick.ac.uk/.
  19. Ribeiro-Almeida, M; Magalhães, Tatiana Mafalda; Mourão, Joana; Paiva, Sofia; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes, Patrícia. Escherichia coli isolate R52_8, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA9779AA. 2022. https://enterobase.warwick.ac.uk/.
  20. Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG6_310, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA6250AA. 2022. https://enterobase.warwick.ac.uk/.
  21. Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG6_311_1, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA6252AA. 2022. https://enterobase.warwick.ac.uk/.
  22. Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG6_312, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA6253AA. 2022. https://enterobase.warwick.ac.uk/.
  23. Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG7_300, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA6254AA. 2022. https://enterobase.warwick.ac.uk/.
  24. Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG7_302, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA6255AA. 2022. https://enterobase.warwick.ac.uk/.
  25. Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG8_300, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA6256AA. 2022. https://enterobase.warwick.ac.uk/.
  26. Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG9_301, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA6261AA. 2022. https://enterobase.warwick.ac.uk/.
  27. Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa, Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG10_301_1, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_YA6262AA. 2022. https://enterobase.warwick.ac.uk/.
  28. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Occurrence of mcr-1-carrying Enterobacteriaceae from chicken meat supplied from Portuguese farms. Whole genome shotgun sequencing project of 2 Klebsiella pneumoniae genomes deposited at DDBJ/ENA/GenBank. BioProject PRJEB44904. 2021. https://www.ebi.ac.uk/ena/browser/view/PRJEB44904.
  29. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Occurrence of mcr-1-carrying Enterobacteriaceae from chicken meat supplied from Portuguese farms. Whole genome shotgun sequencing project of 6 Escherichia coli genomes deposited at DDBJ/ENA/GenBank. BioProject PRJEB44904. 2021. https://www.ebi.ac.uk/ena/browser/view/PRJEB44904.
  30. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Salmonella enterica 1,4,[5],12:i:- isolate P1-C10, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: SAL_DB7941AA. 2020. https://enterobase.warwick.ac.uk/.
  31. Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Salmonella enterica Enteritidis isolate P54-C4, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: SAL_DB7942AA. 2020. https://enterobase.warwick.ac.uk/species/index/senterica.
  32. Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp. enterica serovar 4,5,12:i:- str. 961/07, complete integrative and conjugative element encoding for metal tolerance deposited at DDBJ/ENA/GenBank. GenBank accession number: MN730125. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730125.
  33. Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp. enterica serovar Rissen str. S-2, genetic environment associated with the ars (arsenic) operon deposited at DDBJ/ENA/GenBank. GenBank accession number: MN730126. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730126.1/.
  34. Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp. enterica serovar 4,5,12:i:- str. SLK-340, complete integrative and conjugative element encoding for metal tolerance deposited at DDBJ/ENA/GenBank. GenBank accession number: MN730127. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730127.
  35. Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp. enterica serovar 4,5,12:i:- str. SLK-521, complete integrative and conjugative element encoding for metal tolerance deposited at DDBJ/ENA/GenBank. GenBank accession number: MN730128. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730128.
  36. Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp. enterica serovar Typhimurium str. SLK-532, complete integrative and conjugative element encoding for metal tolerance deposited at DDBJ/ENA/GenBank. GenBank accession number: MN730129. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730129.
  37. Silva, Liliana; Grosso, Filipa; Peixe, L; Mourão, Joana. Acinetobacter pittii strain HGSA488 plasmid pLS488, complete sequence deposited at DDBJ/ENA/GenBank. GenBank accession number: MF078634. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MF078634.
  38. Silva, Liliana; Grosso, Filipa; Peixe, L; Mourão, Joana. Acinetobacter pittii strain HGSA535 plasmid pLS535, complete sequence deposited at DDBJ/ENA/GenBank. GenBank accession number: MF078635. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MF078635.
  39. Antunes, Patrícia; Campos, Joana; Pereira, Joana; Novais, Carla; Peixe, L; Mourão, Joana. Citrobacter braakii strain TrS59-15 plasmid quinolone resistance protein QnrB90 (qnrB) gene, qnrB90 allele, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: MG182074. 2018. https://www.ncbi.nlm.nih.gov/nuccore/MG182074.
  40. Antunes, Patrícia; Alves, Tatiana; Campos, Joana; Novais, Carla; Novais, Ângela; Peixe, L; Mourão, Joana. Salmonella enterica subsp. enterica serovar Bovismorbificans strain HP507391 plasmid IncHI2 In60-like integron, complete sequence deposited at DDBJ/ENA/GenBank. GenBank accession number: JX026665. 2016. https://www.ncbi.nlm.nih.gov/nuccore/JX026665.
  41. Antunes, Patrícia; Machado, Jorge; Peixe, L; Mourão, Joana. Salmonella enterica subsp. enterica strain 382/03 plasmid IncN QNRS1 (qnrS1) gene, partial cds deposited at DDBJ/ENA/GenBank. GenBank accession number: HQ214119. 2016. https://www.ncbi.nlm.nih.gov/nuccore/HQ214119.
  42. Campos, Joana; Pestana, Nazaré; Peixe, L; Novais, Carla; Antunes, Patrícia; Mourão, Joana. Citrobacter freundii strain S30_28 QnrB9 (qnrB9) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC688257. 2013. https://www.ncbi.nlm.nih.gov/nuccore/KC688257.
  43. Campos, Joana; Pestana, Nazaré; Peixe, L; Antunes, Patrícia; Mourão, Joana. Raoultella terrigena strain S52_90 extended-spectrum beta-lactamase SHV-2 (blaSHV-2) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC879153. 2013. https://www.ncbi.nlm.nih.gov/nuccore/KC879153.
  44. Antunes, Patrícia; Campos, Joana; Pereira, Joana; Novais, Carla; Peixe, L; Mourão, Joana. Citrobacter sp. TR10_13 quinolone resistance protein QnrB17 (qnrB17) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC801335. 2013. https://www.ncbi.nlm.nih.gov/nuccore/KC801335.
  45. Antunes, Patrícia; Campos, Joana; Mourão, Joana; Pereira, Joana; Novais, Carla; Peixe, L. Citrobacter sp. TR52_19 quinolone resistance protein QnrB10 (qnrB10) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC801336. 2013. https://www.ncbi.nlm.nih.gov/nuccore/KC801336.
  46. Antunes, Patrícia; Campos, Joana; Pereira, Joana; Novais, Carla; Peixe, L; Mourão, Joana. Citrobacter sp. TR52_21 quinolone resistance protein QnrB10 (qnrB10) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC801337. 2013. https://www.ncbi.nlm.nih.gov/nuccore/KC801337.
  47. Antunes, Patrícia; Campos, Joana; Mourão, Joana; Pereira, Joana; Novais, Carla; Peixe, L. Citrobacter spp. TR21_24 plasmid-mediated quinolone resistance protein (qnrB72) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC741443. 2013. https://www.ncbi.nlm.nih.gov/nuccore/KC741443.
Preprint
  1. Andreia Rebelo; Agostinho Almeida; Luísa Peixe; Patrícia Antunes; Carla Novais. "Unraveling the Role of Metals and Organic Acids towards Bacterial Antimicrobial Resistance in the Food Chain". 2023. https://doi.org/10.20944/preprints202307.1236.v1.
    10.20944/preprints202307.1236.v1
  2. Ana P. Tedim; Ana C. Almeida-Santos; Val F. Lanza; Carla Novais; Teresa M. Coque; Ana R. Freitas; Luísa Peixe. "Bacteriocin Distribution Patterns inEnterococcus faeciumandEnterococcus lactis:Bioinformatic Analysis Using a Tailored Genomics Framework". 2023. https://doi.org/10.1101/2023.11.13.566347.
    10.1101/2023.11.13.566347
  3. Andreia Rebelo; Bárbara Duarte; Ana R. Freitas; Luísa Peixe; Patrícia Antunes; Carla Novais. "Exploring Peracetic Acid and Acidic pH Tolerance of Antibiotic Resistant Non-typhoidal Salmonella and Enterococcus faecium from Diverse Epidemiological and Genetic Backgrounds". 2023. https://doi.org/10.20944/preprints202307.1793.v1.
    10.20944/preprints202307.1793.v1
  4. Svetlana Ugarcina Perovic; Magdalena Ksiezarek; Joana Rocha; Elisabete Alves Cappelli; Márcia Sousa; Teresa Gonçalves Ribeiro; Filipa Grosso; Luísa Peixe. "Extended bacterial diversity of the urinary microbiome of reproductive-age healthy European women captured by culturomics and long-read amplicon sequencing". 2022. https://doi.org/10.1101/2022.01.19.476882.
    10.1101/2022.01.19.476882
Thesis / Dissertation
  1. Peixe, L. "Characterization of plasmidic extended spectrum b-lactamases in E. coli". PhD, 1996.
Website
  1. Ribeiro TG; Duarte, Bárbara; Peixe, L. Culture Collection of Porto (CCP). 2022. https://ccp.ff.up.pt/.

Intellectual property

Patent
  1. Grosso, Filipa; Peixe, L; Cristiana A. V. Torres; Maria A M Reis. 2019. "PROCESS FOR PRODUCTION OF 2-PHENYLETHANOL BY A SELECTED ACINETOBACTER SOLI STRAIN AND USES THEREOF".
    Granted/Issued
Provisional application for patent
  1. 2019. "HIGH-YIELD NATURAL PRODUCTION OF 2-PHENYLETHANOL USING AN ENVIRONMENTAL BACTERIAL STRAIN".
    Protected

Other

Dataset
  1. Cappelli, Elisabete Alves; Ksiezarek, Magdalena; Wolf, Jacqueline; Neumann-Schaal, Meina; Ribeiro TG; Peixe, L. Corynebacterium lehmanniae strain c8Ua_144, whole genome shotgun sequencing project.
Other output
  1. ICEs are the main reservoirs of the ciprofloxacin-modifying crpP gene in Pseudomonas aeruginosa. 2020. João Botelho; Filipa Grosso; Luísa Peixe. https://doi.org/10.1101/2020.03.13.991208.
    10.1101/2020.03.13.991208
  2. Registration of new bacterial species - Lactobacillus mulieris sp. nov.. 2020. Peixe, L.
    doi: 10.1099/ijsem.0.003901
  3. Comparative genomics of global optrA-carrying Enterococcus faecalis uncovers common genetic features and a chromosomal hotspot for optrA acquisition. 2019. Ana R. Freitas; Ana P. Tedim; Carla Novais; Luísa Peixe. https://doi.org/10.1101/785295.
    10.1101/785295
  4. A large self-transmissible plasmid from Nigeria confers resistance to multiple antibacterials without a carrying cost. 2019. Rubén Monárrez; Molly Braun; Olivia Coburn-Flynn; João Botelho; Babatunde W. Odeotyin; Jose I. Otero-Vera; Naa Kwarley Quartey; et al. https://doi.org/10.1101/545939.
    10.1101/545939
  5. Registration of new bacterial species - Citrobacter portucalensis sp. nov.. 2017. Peixe, L.
    doi: 10.1099/ijsem.0.002154.
  6. Registration of new bacterial species - Citrobacter europaeus sp. nov.. 2017. Peixe, L.
    doi: 10.1099/ijsem.0.001606
  7. Registration of new bacterial species - Bacillus invictae sp. nov.. 2014. Peixe, L.
    doi: 10.1099/ijs.0.067850-0
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2022/09/28 Strategies and options to mitigate antimicrobial resistance in food-producing environments 2nd Global Conference on Foodborne AMR
Ministro da Alimentação e Saúde da República da Coreia; Food and Agriculture Organization of the United Nations (Seoul, South Korea)
2019 Paradigm shift in female urinary microbiota Microbiology day, FFUP/ICBAS
(Portugal)
2019 Time to change microbiological approach to overactive bladder 34th Annual EAU Congress
(Spain)
2019 Female urinary tract microbiota profiling: a comprehensive in-depth study Meeting - Urobiome 2019
(San Diego, United States)
2019 Linezolid-resistant Enterococcus faecium carrying identical Tn6246::fexB-poxtA in humans and bovine from different continents 29th European Congress Clinical Microbiology and Infectious Diseases
(Netherlands)
2019 A powerful and cost-effective strain typing tool: the ideal solution for real-time control of Klebsiella pneumoniae infections Congress of Microbiology and Biotechnology (Microbiotec19)
(Portugal)
2019 Resistance in Gram positive microorganisms Antimicrobial Resistance in the 21st century: a global threat
Pan-American Association for Infectiology, Spanish Society for Infectious Diseases and Clinical Microbiology, Clinical Microbiology and Infection, Lancet Infectious Diseases, ESCMID (Panama)
2019 New methods in bacterial identification and diagnosis XXIII Encontro Científico APAC
Associação Portuguesa de Analistas Clínicos (APAC) (Portugal)
2019 Typing by FTIR 12th International Meeting on Microbial Epidemiological Markers (IMMEM XII)
ESCMID, ESGEM (Croatia)
2019 Comparative genomics analysis of optrA-carrying Enterococcus faecalis strains: new insights on clonal and genetic hotspots for optrA acquisition 12th International Meeting on Microbial Epidemiological Markers (IMMEM XII)
ESCMID, ESGEM (Croatia)
2019 Improving bacterial typing, a strategy to contain antibiotic resistance Encontro com a Ciência e Tecnologia em Portugal (Ciência 2019)
Fundação para a Ciência e Tecnologia, Ciência Viva (Portugal)
2019 Multi-resistant microorganisms - Where, when and how? I Encontro Controlo da Infeção
Hospital da Misericórdia de Vila Verde (Portugal)
2019 Key players driving environmental emergence and spread of AMR International Conference on One Health Antimicrobial Resistance (ICOHAR19)
ESGVM, ESCMID (Netherlands)
2019 Future of Antibiotherapy I Jornadas dos Serviços Farmacêuticos
Hospital de Braga (Portugal)
2018 Unveiling secrets of urinary microbiota: impact in the urinary tract diseases Microbiology day, FFUP/ICBAS
(Portugal)
2018 From farm to fork: dissemination of Tn554::fexA-optrA in linezolid-resistant Enterococcus faecalis clones from chicken faeces and meat in Tunisia 28th European Congress Clinical Microbiology and Infectious Diseases
(Spain)
2018 Escherichia coli resistente a fosfomicina causante de infecciones urinarias: elevada frecuencia de ST131 y detección del gen fosA3 XXII Congreso Nacional de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica
(Spain)
2018 Outbreak of a multidrug resistant and phylogenetically distant ST17 Klebsiella pneumoniae producing CTX-M-15 among young children 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
European Society of Clinical Microbiology and Infectious Diseases (ESCMID) (Netherlands)
2018 The secret is on sugar: capsular type explains the discrimination of Acinetobacter baumannii clones by fourier-transform infrared (FT-IR) spectroscopy and multilocus sequence typing 28th ECCMID
ESCMID (Spain)
2018 Water and soil as reservoirs for MDR genes 28th ECCMID
ESCMID (Spain)
2017 Antibiotics resistance, utopia/dystopia and the future Antibiotic resistance, Science-Society Dialogue and the Future - rehearsing scenarios
Instituto de Ciências Biomédicas Abel Salazar (Porto, Portugal)
2017 Application of FT-IR and MALDI-TOF MS for bacterial typing: a current standpoint FT-IR Spectroscopy in Microbiological and Medical Diagnostics
(Germany)
2017 Does the food production has a key role in the antibiotic resistance burden? Federation of European Microbiological Societies (FEMS) 2017
(Spain)
2017 Connecting resistance data in the animal and human sector 27th European Congress of Clinical Microbiology and Infectious Diseases
(Austria)
2017 Bacterial typing - what methodology should I use? (Meet the experts session) 27th European Congress of Clinical Microbiology and Infectious Diseases
(Austria)
2017 Good bacteria, bad bacteria – insights from healthy women urinary microbiota MicroBiotec 2017
(Portugal)
2016 Antimicrobial Resistance - The Food Chain Connection Gut Microbiome 2016
University of Manipal (India)
2016 Novelties in Clinical Bacteriology: from basics to practice 26th European Congress of Clinical Microbiology and Infectious Diseases
(Netherlands)
2016 Epidemiology in Northern Portugal of carbapenemases-producing strains Workshop in Carbapenemases
Sociedade Portuguesa de Doenças Infecciosas e Microbiologia Clínica (Portugal)
2016 Clones or plasmids: which is the most important in the spread of antibiotic resistance Antibiotic Resistance Colloquium
(Portugal)
2015 Antimicrobial Resistance and the Food Chain International Workshop on Dermatological Infections and Food-borne Diseases
(Vietnam)
2015 Antimicrobial resistance: the animal production connection? 25th Congress of the Spanish Society for Microbiology
(Spain)
2015 Resistance in the animal sector and its impact on humans Liochemfilm workshop
(Italy)
2015 Phylogeny and comparative genomics unveil independent diversification trajectories of qnrB and genetic surroundings within Citrobacter sp 3rd International Symposium on the Environmental Dimension of Antibiotic Resistance (EDAR 3)
(Germany)
2014 Antimicrobial resistance:from farm to table ALAM 2014: XXII Congresso Latino-americano de Microbiologia
(Colombia)
2014 Antibiotic resistance Simpósio APTFeridas 2014 - "Infection and Quality: What Challenges?"
(Portugal)
2014 Bacterial adaptation, a major obstacle to the therapeutic success of antibiotics V Forum on Pharmacological Inv.: The clinical use of anti-inflammatory and anti-infectious drugs
(Portugal)
2013 Biting off more than we can chew? How multiple drug resistance is affecting how we manage food-borne infection 23rd European Congress of Clinical Microbiology and Infectious Diseases
(Germany)
2012 Biofilm Persistence and Antibiotic Resistance in Clinical Acinetobacter baumannii isolates 35th International Congress of the Society for Microbial Ecology and Disease
(Spain)
2011 Carbapenem resistance in Enterobacteriaceae: a global perspective 8th International Congress of Pharmaceutical Sciences - CIFARP 2011
(Brazil)

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2021/05/01 - Current Lactobacillaceae in the urinary microbiota of patients with overactive bladder
Supervisor of Andreia Sofia Rodrigues Garcia
Microbiologua (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2021 - Current Understanding the plasmidome and bacteriocinome of human contemporary Enterococcus spp. for future targeted therapies against multidrug-resistant infections
Co-supervisor
PhD program in Pharmaceutical Sciences (PhD)
2020/11/01 - Current Gard@GENUT&OAB: A targeted approach to overactive bladder syndrome through exploration of Gardnerella features
Supervisor of Márcia Daniela Rocha de Sousa
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2019 - Current Adaptation of Enterococcus to dynamic environments: impact of biocides on the epidemiology of tolerant populations and resistance to antibiotics. (
Co-supervisor
PhD program in Pharmaceutical Sciences (PhD)
2012 - Current Epidemiologia de isolados de Escherichia coli resistentes a cefalosporinas de espectro alargado
Supervisor of Ana Constança Mendes
Patologia e Genética Molecular (PhD)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2017 - 2022/01 Comprehensive urinary microbiota profiling: towards better understanding of female urinary tract in health and disease
Supervisor of Magdalena Ksiezarek
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 - 2018 Carbapenemase-producing Enterobacteriaceae: from colonization to infection
Supervisor of Ana Margarida Guerra
Análises Clínicas (Master)
Universidade do Porto Faculdade de Farmácia, Portugal
2015 - 2018 New insights on emergence and success of carbapenem-resistant Acinetobacter spp
Supervisor of Liliana de Jesus Vieira da Silva
Safety and Occupational Health (PhD)
Universidade do Porto Faculdade de Engenharia, Portugal
2015 - 2018 Carbapenemase producers of Pseudomonas aeruginosa: lights on new mobile genetic elements
Supervisor of João Francisco Tomaz Santos Botelho
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2015 - 2018 Tracking Salmonella Population Dynamics and Antimicrobial Resistance: local insights with a global impact
Co-supervisor of Joana Araújo Alves de Campos
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2014 - 2017 In depth characterization of contemporary Escherichia coli and Klebsiella pneumoniae resistant to extended-spectrum B-lactams: from key molecular drivers to clonal delineation
Supervisor of Carla Alexandra Parada Rodrigues
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2012 - 2016 Extending the knowledge on drivers of intrinsic and acquired resistance to cephalosporins and quinolones in Enterobacteriaceae
Supervisor of Teresa Maria Pinto Gonçalves Ribeiro
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2012 - 2016 Contribution of biocides to the selection of Salmonella non-typhoid resistant to antibiotics: a multilayered approach
Co-supervisor of Joana Vanessa Cordeiro Melro Mourão
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2012 - 2015 Temporal and spatial variation in the microbial biota of sea anemones in the Portuguese coast – natural vs abnormal shifts induced by global changes and its relevance for the screening of new marine drugs
Co-supervisor of Joana Rocha
Marine and Environmental Sciences (PhD)
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2011 - 2014 Unveiling population diversity, biosurfactant and antibacterial agents production of Bacillus pumilus group species
Supervisor of Fabiana Raquel Gouveia Pinto Nevado Branquinho
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2011 - 2014 Tolerância a biocidas e dispersão da resistência a antibióticos: uma abordagem fenotípica e molecular em Enterococcus spp de diferentes origens.
Co-supervisor of Maria Eduarda Moreno da Silveira
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2009 - 2012 Resistance in Salmonella isolates from different sources (animals, food animals and clinical): molecular characterization of resistance genes and molecular epidemiology
Supervisor of Patrícia Sofia Carneiro Antunes
Microbiology (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2009 - 2012 Ecology and evolution of antimicrobial resistance in Enterococcus: a multilayered molecular approach with emphasys in the plasmid diversity
Supervisor of Ana Raquel Pinho Freitas
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2008 - 2012 Multi-level analysis of carbapenem-resistant Acinetobacter spp.: towards an understanding on population dynamics
Supervisor of Filipa Maria Fortio Mourato Teixeira Grosso
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2007 - 2012 Study of beta-lactams and quinolones resistance in Salmonella and Escherichia coli recovered from the hospital environment and community
Supervisor of Mara Queiroz
Microbiologia Médica Humana (PhD)
Universidade do Estado do Rio de Janeiro, Brazil
2009 - 2011 Epidemiologia de ß-Lactamases Adquiridas do tipo AmpC em Isolados Clínicos Humanos de Enterobacteriaceae
Supervisor of Francisco José Oliveira Freitas
Clinical Microbiology (Master)
Universidade Fernando Pessoa Faculdade de Ciências da Saúde, Portugal
2004 - 2007 Emergence and genetic evolution of plasmids and integrons in bacterial strains multiple resistants to antibiotics
Supervisor of Elisabete Maria Pereira Machado
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2002 - 2005 Eco-epidemiologia de bacilos de Gram negativo produtores de carbapenemases com impacto clínico
Supervisor of Sandra Maria Basílio Quinteira
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2001 - 2005 Epidemiology of the resistance to vancomycin in portuguese strains (from animals, food animals and humans) of Enterococcus spp
Supervisor of Carla Alexandra Novais de Oliveira e Silva
Microbiologia (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
1999 - 2002 Resistência aos antibióticos ß-lactâmicos em isolados clínicos de Acinetobacter spp : caracterização molecular de novas carbapenemases, IMP-5 e OXA-33, e estudo da relação clonal entre os isolados resistentes ao imipenemo
Supervisor of Gabriela Conceição Duarte Jorge da Silva
Microbiology and Parasitology (PhD)
Universidade de Coimbra Faculdade de Farmácia, Portugal
1999 - 2001 B-lactamases de espectro alargado em escherichia coli e klebsiella pneumoniae isoladas de águas marinhas
Co-supervisor of Alexandra Sofia Morgado Figueiredo
Quality control (Master)
Universidade do Porto Faculdade de Farmácia, Portugal
1999 - 2001 Incidência e susceptibilidade a agentes antimicrobianos de salmonella e listeria monocytogenes em produtos avícolas
Supervisor of Patrícia Sofia Carneiro Antunes
Quality control (Master)
Universidade do Porto Faculdade de Farmácia, Portugal
1998 - 2001 Susceptibilidade aos agentes antimicrobianos de isolados clínicos de Pseudomonas aeruginosa : mecanismos de resistência aos carbapenemos
Supervisor of Olga Maria Antunes Rodrigues Carvalho Cardoso
Microbiology and Parasitology (PhD)
Universidade de Coimbra Faculdade de Farmácia, Portugal
1997 - 1999 Resistências aos antibióticos B-lactâmicos em Enterobacteriaceae isoladas de águas de consumo
Supervisor of Sandra Maria Basílio Quinteira
Quality control (Master)
Universidade do Porto Faculdade de Farmácia, Portugal

Event organisation

Event name
Type of event (Role)
Institution / Organization
2019/07/19 - 2019/07/19 1st Workshop MicroMundo@UPorto 2019 (2019/07/19 - 2019/07/19)
Workshop (President of the Organising Committee)
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
2018/11/15 - 2018/11/15 Opening Session of the innovative Citizen Science project "MicroMundo@UPorto" (2018/11/15 - 2018/11/15)
Other (President of the Organising Committee)
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
2018/09/18 - 2018/09/21 12th International Meeting on Microbial Epidemiological Markers (IMMEM XII) (2018/09/18 - 2018/09/21)
Meeting (Member of the Scientific Committee)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland

Escmid Study Group for Epidemiological markers (ESGEM), Switzerland
2014/09/19 - 2014/09/19 Carbapenemases in Gram negative bacilli: detection and clinical implications (2014/09/19 - 2014/09/19)
Workshop (President of the Organising Committee)
Universidade do Porto Faculdade de Farmácia, Portugal

Event participation

Activity description
Type of event
Event name
Institution / Organization
2019/04/16 - 2019/04/16 Chair Session "Bacterial resistance: evolution, plasmids and fitness"
Congress
29th ECCMID
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2019/04/15 - 2019/04/15 Chair Session "Secrets of Acinetobacter baumannii's virulence"
Congress
29th ECCMID
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2018/09/20 - 2018/09/20 Chair Session "Translation into practice – genomebased pathogen surveillance: hype or real benefit? in collaboration with EFWISG"
Meeting
12th International Meeting on Microbial Epidemiological Markers (IMMEM XII)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland

Escmid Study Group for Epidemiological markers (ESGEM), Switzerland
2018/04/23 - 2018/04/23 Chair Session "Emerging and reemerging water-borne pathogens"
Congress
28th ECCMID
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2018/04/21 - 2018/04/21 Chair Session "Trends in bacterial typing: tools and applications"
Congress
28th ECCMID
European Society of Clinical Microbiology and Infectious Diseases, Switzerland

Jury of academic degree

Topic
Role
Candidate name (Type of degree)
Institution / Organization
2016 Acidentes de trabalho associados a fatores de risco biológico em contexto hospitalar
(Thesis) Arguer
Cláudia Sofia Barros Vieira (PhD)
Universidade do Porto Faculdade de Engenharia, Portugal
2011 Análise molecular de mecanismos determinantes de resistência a antibióticos em Pseudomonas aeruginosa e Acinetobacter ssp.
(Thesis) Arguer
Eduardo Carneiro Clímaco (PhD)
Universidade de São Paulo Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Brazil
2010 Staphylococcus aureus: towards a comprehensive view on epidemiology and clonal spread
(Thesis) Arguer
Teresa Margarida Gomes da Conceição (PhD)
Universidade Nova de Lisboa, Portugal
2004 Caracterização dos Genes de Resistência aos Macrólidos e Estreptograminas em Enterococcus sp.Isolados de Frangos para Consumo Humano
(Thesis) Main arguer
Maria João da Silva Costa (Master)
Universidade do Porto Faculdade de Farmácia, Portugal

Association member

Society Organization name Role
2013 - Current Programa de Prevenção e Controlo de Infeções e Resistência aos Antimicrobianos (PPCIRA)
2009 - Current Sociedade Portuguesa de Microbiologia (SPM)
2004 - Current European Society for Clinical Microbiology and Infectious Disease

Committee member

Activity description
Role
Institution / Organization
2018 - Current ESCMID Food- and Water-borne Infections Study Group – EFWISG - executive committee (https://www.escmid.org/research_projects/study_groups/foodwater_infections/executive_committee/)
Coordinator
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2018 - Current Scientific Advisory Board of the "Joint Programming Initiative on Antimicrobial Resistance" (JPIAMR) (https://www.jpiamr.eu/new-jpiamr-sab-members/)
Member
Joint Programming Initiative on Antimicrobial Resistance, Sweden
2018 - Current National Observatory for Emerging Risks (Observatório Nacional de Riscos Emergentes - ONRE; Portugal)
Member
2014 - Current Commission B: Additives and products or substances used in animal food (https://webcache.googleusercontent.com/search?q=cache:2HRI97ER4W0J:https://www.asae.gov.pt/ficheiros-externos-newsletter/newsletter-n-5-especial-conselho-cientifico-pdf.aspx+&cd=1&hl=pt-PT&ct=clnk&gl=pt)
Advisor / Consultant
Autoridade de Segurança Alimentar e Económica, Portugal
2014 - Current Qualified presumption of safety (QPS) working group
Member
European Food Safety Authority, Italy
2018 - 2021 Panel on Biological Hazards (http://www.efsa.europa.eu/en/panels/biohaz)
Member
European Food Safety Authority, Italy
2015 - 2019 BIOCONTAM Unit. Scientific Network for Microbiological Risk Assessment (MRA) (https://www.efsa.europa.eu/sites/default/files/AF/170307/AF170307-ax18_2.pdf)
Member
European Food Safety Authority, Italy

Conference scientific committee

Conference name Conference host
2019/09/18 - 2019/09/21 12th International Meeting on Microbial Epidemiological Markers (IMMEM XII) ESCMID, ESGEM

Consulting

Activity description Institution / Organization
2009 - Current Portuguese Directorate-General for Health (DGS) consultant (https://www.dgs.pt/directrizes-da-dgs/orientacoes-e-circulares-informativas/circular-informativa-n-02dir-de-29012009-pdf.aspx) Direcção-Geral da Saúde, Portugal

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2012 - Current Clinical Bacteriology - theoretical classes and laboratory practice Análises Clínicas (Mestrado integrado) Universidade do Porto Faculdade de Farmácia, Portugal
2007 - Current Microbiological Quality - theoretical classes and laboratory practice Controlo de Qualidade (Mestrado) Universidade do Porto Faculdade de Farmácia, Portugal
2007 - Current Bacteriology - theoretical classes and laboratory practice Ciências Farmacêuticas (Mestrado integrado) Universidade do Porto Faculdade de Farmácia, Portugal
2000 - Current Clinical Bacteriology - theoretical classes Análises Clínicas (Mestrado) Universidade do Porto Faculdade de Farmácia, Portugal
2013 - 2017 Multidisciplinary Seminars - Doctoral Program in Occupational Safety and Health (DemSSO) Segurança e Saúde Ocupacionais (Doutoramento) Universidade do Porto Faculdade de Engenharia, Portugal
2005 - 2006 Curricular stage - theoretical classes Ciências Farmacêuticas (Licenciatura) Universidade do Porto Faculdade de Farmácia, Portugal
2005 - 2006 Clinical Bacteriology - theoretical classes Análises Clínicas (Especialização pós-licenciatura) Universidade do Porto Faculdade de Farmácia, Portugal
2004 - 2006 Bacteriology - theoretical classes and laboratory pratice Ciências Farmacêuticas (Licenciatura) Universidade do Porto Faculdade de Farmácia, Portugal
2004 - 2006 Microbiological Control - theoretical classes and laboratory practice Controlo de Qualidade (Mestrado) Universidade do Porto Faculdade de Farmácia, Portugal
2004 - 2006 Bacteriology - theoretical classes and laboratory practice Ciências Farmacêuticas (Licenciatura) Universidade do Porto Faculdade de Farmácia, Portugal
2003 - 2005 Veterinary drugs and additives - theoretical classes and laboratory practice Ciências Farmacêuticas (Licenciatura) Universidade do Porto Faculdade de Farmácia, Portugal
2003 - 2005 Microbiology II - laboratory practice Ciências Farmacêuticas (Licenciatura) Universidade do Porto Faculdade de Farmácia, Portugal

Evaluation committee

Activity description
Role
Institution / Organization Funding entity
2019/05/27 - 2019/05/29 ESCAIDE- European Scientific Conference on Applied Infectious Disease Epidemiology European Centre for Disease Prevention and Control (ECDC), Sweden European Commission

Interview (newspaper / magazine)

Activity description Newspaper / Forum
2018/08 "The microbiota of the urinary tract has a crucial role in maintaining the state of health" Jornal Médico Nº 89

Journal scientific committee

Journal title (ISSN) Publisher
2013 - Current Scientific Reports (2045-2322) Springer Science and Business Media LLC
2012 - Current Antibiotics (2079-6382) MDPI AG
2009 - Current Antimicrobial Agents and Chemotherapy (1098-6596) American Society for Microbiology

Mentoring / Tutoring

Topic Student name
2018/07/01 - 2018/09/30 The search of urine interleukin profile for the diagnosis of Overactive Bladder Syndrome: optimization of a flow-cytometry based multiplex commercial kit Maria Carolina Borges de Oliveira
2018/02/01 - 2018/04/30 Lactobacillus spp. in healthy female urinary tract: identification issues and bacterial inhibitory activity assessment Ivan Silva
2018/02/01 - 2018/04/30 Streptococcus agalactiae in the urinary microbiota of healthy women: occurrence and diversity Vanessa Martins
2008 - 2011 Characterization of carbapenem-resistant Pseudomonas aeruginosa strains from different hospital wards in South Hungary Csilla Ratkai

Other jury / evaluation

Activity description Institution / Organization
2015 - Current Editorial Board of Antimicrobial Agents and Chemotherapy Journal
2015 - Current Editorial Board of Microbial Drug Resistance Journal
2014 - Current Editorial Board of Frontiers in Microbiology Journal
2013 - Current Reviewer for ESCMID Research Grants applications European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2019/01/15 - 2019/02/15 29th ECCMID Abstract Reviewer European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2018/01/15 - 2018/02/15 28th ECCMID Abstract Reviewer European Society of Clinical Microbiology and Infectious Diseases, Switzerland
Distinctions

Award

2019 Pedagogic Inovation Award
Universidade do Porto, Portugal
2017 ESCMID Fellow
European Society of Clinical Microbiology and Infectious Diseases, Switzerland

Other distinction

2018 BEST RATED ABSTRACT- The secret is on sugar: capsular type explains the discrimination of Acinetobacter baumannii clones by fourier-transform infrared (FT-IR) spectroscopy and multilocus sequence typing”) for the 28th ECCMID
EUROPEAN SOCIETY FOR CLINICAL MICROBIOLOGY AND INFECTIOUS DISEASES, Switzerland
2017 Best Poster - 10ª Reunião Anual PortFIR
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal
2011 Nutrition Award
2010 Nutrition Award
2009 Research Grant to Support Ph.D. in Scope of Infectious Pathology- Principal Coordinator