Artigo em revista |
- Mendes, Felisberto S.; Gonçalves, Alexandre D.A.; Guiomar, Filipa I.S.; Martins, Rafaela N.; Ramalho, João P.Prates; Martins,
Luís F.G.. "On the diffusion of carbamazepine, acetaminophen and atenolol in water: An experimental and theoretical approach".
Fluid Phase Equilibria 580 (2024): 114056. http://dx.doi.org/10.1016/j.fluid.2024.114056.
10.1016/j.fluid.2024.114056
- Martins, Rafaela N.; Celia-Silva, Lucas G.; Ramalho, João P. Prates; Morgado, Pedro; Filipe, Eduardo J. M.; Martins, Luís
F. G.. "Influence of Ionic Liquids on the Aggregation and Preaggregation Phenomena of Asphaltenes in Model Solvent Mixtures
by Molecular Dynamics Simulations and Quantum Mechanical Calculations: The Effect of Cation’s Shape and Size". Energy &
Fuels (2024): http://dx.doi.org/10.1021/acs.energyfuels.3c04561.
10.1021/acs.energyfuels.3c04561
- Raquel Eustáquio; João P. Prates Ramalho; Ana Teresa Caldeira; António Pereira. "Rational Design of Cost-Effective 4-Styrylcoumarin
Fluorescent Derivatives for Biomolecule Labeling". Molecules (2023): https://doi.org/10.3390/molecules28196822.
10.3390/molecules28196822
- Margarida M. Cordeiro; Hugo A. L. Filipe; Patrícia dos Santos; Jaime Samelo; João P. Prates Ramalho; Luís M. S. Loura; Maria
J. Moreno. "Interaction of Hoechst 33342 with POPC Membranes at Different pH Values". Molecules (2023): https://doi.org/10.3390/molecules28155640.
10.3390/molecules28155640
- Anthony Burke; Elisabete P. Carreiro; Gesine Herrman; Hans-Jürgen Federsel; Catarina Amorim; Daniela Fonseca; Rita Duarte;
João Paulo Ramalho. "Sustainable OrganoCatalyzed Enantioselective Catalytic Michael Additions in Betaine derived Deep Eutectic
Solvents". SynOpen (2023): http://dx.doi.org/10.1055/a-2117-9971.
10.1055/a-2117-9971
- Felisberto S. Mendes; Carlos E.M. Cruz; Rafaela N. Martins; João P. Prates Ramalho; Luís F.G. Martins. "On the diffusion of
ketoprofen and ibuprofen in water: An experimental and theoretical approach". The Journal of Chemical Thermodynamics
178 (2023): 106955-106955. http://dx.doi.org/10.1016/j.jct.2022.106955.
10.1016/j.jct.2022.106955
- Michael Lalanne-Tisné; Audrey Favrelle-Huret; Wim Thielemans; João P. Prates Ramalho; Philippe Zinck. "DFT Investigations
on the Ring-Opening Polymerization of Trimethylene Carbonate Catalysed by Heterocyclic Nitrogen Bases". Catalysts (2022):
https://doi.org/10.3390/catal12101280.
10.3390/catal12101280
- Lucas G. Celia-Silva; Rafaela Nascimento; Alfredo J. Palace Carvalho; João P. Prates Ramalho; Pedro Morgado; Eduardo J.M.
Filipe; Luís F. G. Martins. "Influence of Ionic Liquids on the Aggregation and Pre-aggregation Phenomena of Asphaltenes in
Model Solvent Mixtures by Molecular Dynamics Simulations and Quantum Mechanical Calculations". Energy & Fuels 36
16 (2022): 9048-9065. http://dx.doi.org/10.1021/acs.energyfuels.2c01387.
10.1021/acs.energyfuels.2c01387
- Alexandre C. Oliveira; Hugo Filipe; João P. Prates Ramalho; Armindo Salvador; Carlos Geraldes; Maria João Pedrosa Ferreira
Moreno Silvestre; Luis Loura. "Modeling Gd3+ Complexes for Molecular Dynamics Simulations: Toward a Rational Optimization
of MRI Contrast Agents". Inorganic Chemistry 61 30 (2022): 11837-11858. http://dx.doi.org/10.1021/acs.inorgchem.2c01597.
10.1021/acs.inorgchem.2c01597
- Eustáquio, Raquel; Ramalho, João P. Prates; Caldeira, Ana T.; Pereira, António. "New Red-Shifted 4-Styrylcoumarin Derivatives
as Potential Fluorescent Labels for Biomolecules". Molecules 27 5 (2022): 1461. http://dx.doi.org/10.3390/molecules27051461.
10.3390/molecules27051461
- Magalhães, Nisa; Simões, Guilherme M.; Ramos, Cristiana; Samelo, Jaime; Oliveira, Alexandre C.; Filipe, Hugo A. L.; Ramalho,
João P. Prates; Moreno, Maria João; Loura, Luís M. S.. "Interactions between Rhodamine Dyes and Model Membrane Systems—Insights
from Molecular Dynamics Simulations". Molecules 27 4 (2022): 1420. http://dx.doi.org/10.3390/molecules27041420.
10.3390/molecules27041420
- Ramalho, João P. Prates; Dordio, Ana V.; Carvalho, Alfredo J. Palace. "The fate of three common plastic nanoparticles in water:
A molecular dynamics study". Journal of Molecular Structure 1249 (2022): 131520. http://dx.doi.org/10.1016/j.molstruc.2021.131520.
10.1016/j.molstruc.2021.131520
- Raquel Eustáquio; João P. Prates Ramalho; Ana T. Caldeira; António Pereira. "Development of new 2-piperidinium-4-styrylcoumarin
derivatives with large Stokes shifts as potential fluorescent labels for biomolecules". RSC Advances 12 14 (2022):
8477-8484. https://doi.org/10.1039/D2RA00716A.
10.1039/D2RA00716A
- Eduarda M. P. Silva; Luisa Barreiros; Sara R. Fernandes; Paula Alexandra Sa; João P. Prates Ramalho; Marcela Segundo. "Acetonitrile
Adducts of Tranexamic Acid as Sensitive Ions for Quantification at Residue Levels in Human Plasma by UHPLC-MS/MS". Pharmaceuticals
(2021): https://www.mdpi.com/1424-8247/14/12/1205.
10.3390/ph14121205
- Stoian, Ioan-Adrian; Iacob, Bogdan-Cezar; Ramalho, João P. Prates; Marian, Iuliu O.; Bodoki, Ede; Oprean, Radu. "Chiral enhancement
via surface-confined supramolecular self-assembly at the electrified liquid/solid interface". Electrochimica Acta 387
(2021): 138464. http://dx.doi.org/10.1016/j.electacta.2021.138464.
10.1016/j.electacta.2021.138464
- Carolina S. Marques; Hugo Cruz; Simon E. Lawrence; Sandra Gago; João P. Prates Ramalho; Jorge Morgado; Luís C. Branco; et
al. "Ambipolar pentacyclic diamides with interesting electrochemical and optoelectronic properties". Chemical Communications
56 94 (2020): 14893-14896. https://doi.org/10.1039/D0CC04629A.
10.1039/D0CC04629A
- Ooi; Salvador; Martins; Pereira; Caldeira; Ramalho. "Development of a Simple Method for Labeling and Identification of Protein
Binders in Art". Heritage 2 3 (2019): 2444-2456. http://dx.doi.org/10.3390/heritage2030150.
10.3390/heritage2030150
- Yin, O.S.; Prates Ramalho, J.P.; Pereira, A.; Martins, S.; Salvador, C.; Caldeira, A.T.. "A simple method for labelling and
detection of proteinaceous binders in art using fluorescent coumarin derivatives ¿". European Physical Journal
Plus 134 2 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85061907568&partnerID=MN8TOARS.
10.1140/epjp/i2019-12478-4
- Stanley, N.; Chenal, T.; Jacquel, N.; Saint-Loup, R.; Prates Ramalho, J.P.; Zinck, P.. "Organocatalysts for the Synthesis
of Poly(ethylene terephthalate-co-isosorbide terephthalate): A Combined Experimental and DFT Study". Macromolecular Materials
and Engineering 304 9 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85068088844&partnerID=MN8TOARS.
10.1002/mame.201900298
- Stoian, I.A.; Iacob, B.-C.; Prates Ramalho, J.P.; Marian, I.O.; Chi¿, V.; Bodoki, E.; Oprean, R.. "A chiral electrochemical
system based on L-cysteine modified gold nanoparticles for propranolol enantiodiscrimination: Electroanalysis and computational
modelling". Electrochimica Acta 326 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85073006143&partnerID=MN8TOARS.
10.1016/j.electacta.2019.134961
- Neves, M.C.; Filipe, H.A.L.; Reis, R.L.; Ramalho, J.P.P.; Coreta-Gomes, F.; Moreno, M.J.; Loura, L.M.S.. "Interaction of bile
salts with lipid bilayers: An atomistic molecular dynamics study". Frontiers in Physiology 10 APR (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85068202691&partnerID=MN8TOARS.
10.3389/fphys.2019.00393
- Garcia, Raquel; Carreiro, Elisabete P.; Prates Ramalho, João P.; Mirão, J.; Burke, Anthony J.; Gomes da Silva, Marco D.R.;
Freitas, Ana Maria Costa; Cabrita, Maria João. "A magnetic controllable tool for the selective enrichment of dimethoate from
olive oil samples: A responsive molecular imprinting-based approach". Food Chemistry 254 1 (2018): 309-316.
Publicado • 10.1016/j.foodchem.2018.02.003
- Côrte-Real, Leonor; Teixeira, Ricardo G.; Gírio, Patrícia; Comsa, Elisabeta; Moreno, Alexis; Nasr, Rachad; Baubichon-Cortay,
Hélène; et al. "Methyl-cyclopentadienyl Ruthenium Compounds with 2,2'-Bipyridine Derivatives Display Strong Anticancer Activity
and Multidrug Resistance Potential". Inorganic Chemistry 57 8 (2018): 4629-4639.
Publicado • 10.1021/acs.inorgchem.8b00358
- González-Pérez, M.; Ooi, S. Y.; Martins, S.; Prates Ramalho, João P.; Pereira, A.; Caldeira, A. T.; M. González-Pérez; et
al. "Gaining insight into the photophysical properties of a coumarin STP ester with potential for bioconjugation". New
Journal of Chemistry 42 20 (2018): 16635-16645. https://doi.org/10.1039/C8NJ03548B.
Publicado • 10.1039/c8nj03548b
- Garcia, Raquel; Carreiro, Elisabete P.; Prates Ramalho, João P.; Burke, Anthony J.; Lima, João C.; Gomes da Silva, Marco D.R.;
Costa Freitas, Ana Maria; Cabrita, Maria João. "A photoswitchable “host-guest¿? approach for the selective enrichment of dimethoate
from olive oil". Analytica Chimica Acta 1035 0 (2018): 60-69.
Publicado • 10.1016/j.aca.2018.07.017
- Dordio, A.V.; Miranda, S.; Prates Ramalho, J.P.; Carvalho, A.J. Palace. "Mechanisms of removal of three widespread pharmaceuticals
by two clay materials". Journal of Hazardous Materials 323 Part A (2017): 575-583. http://hdl.handle.net/10174/22207.
Publicado • 10.1016/j.jhazmat.2016.05.091
- Luchian, Raluca; Vinteler, Emil; Chis, Cosmina; Vasilescu, Mihai; Leopold, Nicolae; Prates Ramalho, João P.; Chis, Vasile.
"Conformational preference and spectroscopical characteristics of the active pharmaceutical ingredient Levetiracetam". Journal
of Pharmaceutical Sciences 106 12 (2017): 3564-3573. http://hdl.handle.net/10174/22155.
Publicado • 10.1016/j.xphs.2017.08.008
- João P. Prates Ramalho; Francesc Illas; José R. B. Gomes. "Adsorption of CO on the rutile TiO2(110) surface: a dispersion-corrected
density functional theory study". Physical Chemistry Chemical Physics 19 3 (2017): 2487-2494. https://doi.org/10.1039/C6CP06971A.
10.1039/C6CP06971A
- Martins, Luís F.G.; Pereira, Luís A.M.; Silva, Gonçalo M.C.; Ascenso, José R.; Morgado, Pedro; Ramalho, João P. Prates; Filipe,
Eduardo J.M.. "Fluorinated surfactants in solution: Diffusion coefficients of fluorinated alcohols in water". Fluid Phase
Equilibria 407 (2016): 322-333. http://hdl.handle.net/10174/16606.
Publicado • 10.1016/j.fluid.2015.06.006
- do Canto, António M.T.M.; Robalo, João R.; Santos, Patrícia D.; Carvalho, Alfredo J. Palace; Ramalho, J.P. Prates; Loura,
Luís M.S.. "Diphenylhexatriene membrane probes DPH and TMA-DPH: A comparative molecular dynamics simulation study". Biochimica
et Biophysica Acta (BBA) - Biomembranes 1858 11 (2016): 2647-2661. http://hdl.handle.net/10174/19668.
Publicado • 10.1016/j.bbamem.2016.07.013
- Amaro, Mariana; Filipe, Hugo A. L.; Prates Ramalho, J. P.; Hof, Martin; Loura, Luís M. S.. "Fluorescence of nitrobenzoxadiazole
(NBD)-labeled lipids in model membranes is connected not to lipid mobility but to probe location". Phys. Chem. Chem. Phys.
18 10 (2016): 7042-7054. http://hdl.handle.net/10174/19687.
Publicado • 10.1039/c5cp05238f
- Nogueira, G.; Favrelle, A.; Bria, M.; Prates Ramalho, J.P.; Mendes, P.J.; Valente, A.; Zinck, P.; et al. "Adenine as an organocatalyst
for the ring-opening polymerization of lactide: Scope, mechanism and access to adenine-functionalized polylactide". Reaction
Chemistry and Engineering 1 5 (2016): 508-520. http://www.scopus.com/inward/record.url?eid=2-s2.0-85000937260&partnerID=MN8TOARS.
Publicado • 10.1039/c6re00061d
- Vinteler, Emil; Stan, Nicoleta-Florina; Luchian, Raluca; Cainap, Calin; Ramalho, João P. Prates; Chis, Vasile. "Conformational
landscape and low lying excited states of imatinib". Journal of Molecular Modeling 21 4 (2015): 1-13.
Publicado • 10.1007/s00894-015-2639-8
- Martins, Luís F.G.; Parreira, M. Cristina B.; Ramalho, João P. Prates; Morgado, Pedro; Filipe, Eduardo J.M.. "Prediction of
diffusion coefficients of chlorophenols in water by computer simulation". Fluid Phase Equilibria 396 1 (2015): 9-19.
Publicado • 10.1016/j.fluid.2015.03.026
- Filipe, Hugo A. L.; Santos, Lennon S.; Prates Ramalho, J. P.; Moreno, Maria João; Loura, Luís M. S.; Filipe, H.A.L.; Santos,
L.S.; et al. "Behaviour of NBD-head group labelled phosphatidylethanolamines in POPC bilayers: a molecular dynamics study".
Phys. Chem. Chem. Phys. 17 17 (2015): 20066-20079. http://www.scopus.com/inward/record.url?eid=2-s2.0-84938231872&partnerID=MN8TOARS.
Publicado • 10.1039/C5CP01596K
- Marques, Carolina S.; Locati, Abel; Prates Ramalho, J.P.; Burke, Anthony J.. "Palladium catalysed sequential imine arylation/Suzuki–Miyaura
coupling: synthesis of a-(biarylyl)benzylamines". Tetrahedron 71 21 (2015): 3314-3324.
Publicado • 10.1016/j.tet.2015.03.105
- Martins, Nuno; Carreiro, Elisabete P.; Locati, Abel; Ramalho, João P. Prates; Cabrita, Maria João; Burke, Anthony J.; Garcia,
Raquel. "Design and development of molecularly imprinted polymers for the selective extraction of deltamethrin in olive oil:
An integrated computational-assisted approach". Journal of Chromatography A 1409 (2015): 1-10.
Publicado • 10.1016/j.chroma.2015.07.025
- Robalo, João R.; Ramalho, J. P. Prates; Huster, Daniel; Loura, Luís M. S.. "Influence of the sterol aliphatic side chain on
membrane properties: a molecular dynamics study". Phys. Chem. Chem. Phys. 17 35 (2015): 22736-22748. http://hdl.handle.net/10174/16607.
Publicado • 10.1039/c5cp03097h
- Peixoto, Daniela; Locati, Abel; Marques, Carolina S.; Goth, Albertino; Ramalho, J. P. Prates; Burke, Anthony J.. "A catalytic
route to dibenzodiazepines involving Buchwald–Hartwig coupling: reaction scope and mechanistic consideration". RSC Adv.
5 121 (2015): 99990-99999.
Publicado • 10.1039/c5ra19599c
- Carvalho, A. J. Palace; Dordio, A. V.; Ramalho, J. P. Prates. "A DFT study on the adsorption of benzodiazepines to vermiculite
surfaces". Journal of Molecular Modeling 20 7 (2014): 1-8.
Publicado • 10.1007/s00894-014-2336-z
- Ungurean, Alia; Oltean, Mircea; David, Leontin; Leopold, Nicolae; Prates Ramalho, João P.; Chis, Vasile. "Adsorption of sulfamethoxazole
molecule on silver colloids: A joint SERS and DFT study". Journal of Molecular Structure 1073 1 (2014): 71-76. 00222860.
Publicado • 10.1016/j.molstruc.2014.05.074
- Silva, Tiago J. L.; Mendes, Paulo J.; Santos, Ana M.; Garcia, M. Helena; Robalo, M. Paula; Ramalho, J. P. Prates; Carvalho,
A. J. Palace; et al. "Mono(¿ 5 -cyclopentadienyl)metal(II) Complexes with Thienyl Acetylide Chromophores:
Synthesis, Electrochemical Studies, and First Hyperpolarizabilities". Organometallics 33 18 (2014): 4655-4671.
Publicado • 10.1021/om4001204
- Pereira, Luís A. M.; Martins, Luís F. G.; Ascenso, José R.; Morgado, Pedro; Ramalho, João P. Prates; Filipe, Eduardo J. M..
"Diffusion Coefficients of Fluorinated Surfactants in Water: Experimental Results and Prediction by Computer Simulation".
Journal of Chemical & Engineering Data 59 10 (2014): 3151-3159.
Publicado • 10.1021/je500211w
- Robalo, João R.; do Canto, António M. T. Martins; Carvalho, A. J. Palace; Ramalho, J. P. Prates; Loura, Luís M. S.. "Behavior
of Fluorescent Cholesterol Analogues Dehydroergosterol and Cholestatrienol in Lipid Bilayers: A Molecular Dynamics Study".
The Journal of Physical Chemistry B 117 19 (2013): 5806-5819.
Publicado • 10.1021/jp312026u
- Ramalho, João P. Prates; Gomes, José R. B.; Illas, Francesc. "Accounting for van der Waals interactions between adsorbates
and surfaces in density functional theory based calculations: selected examples". RSC Advances 3 32 (2013): 13085-13085.
Publicado • 10.1039/c3ra40713f
- Avó, João; Martins, Sérgio; Parola, A. Jorge; Lima, João C.; Branco, Paula S.; Prates Ramalho, João P.; Pereira, António.
"A Family of Styrylcoumarins: Synthesis, Spectroscopic, Photophysical and Photochemical Properties". ChemPlusChem 78
8 (2013): 789-792.
Publicado • 10.1002/cplu.201300118
- Prates Ramalho, J. P.; Dordio, Ana V.; Palace Carvalho, A. J.. "Adsorption of two phenoxyacid compounds on a clay surface:
a theoretical study". Adsorption 19 (2013): 937-944.
Publicado • 10.1007/s10450-013-9492-9
- Silva, Tiago J. L.; Mendes, Paulo J.; Garcia, M. Helena; Robalo, M. Paula; Prates Ramalho, J. P.; Palace Carvalho, A. J.;
Büchert, Marina; Wittenburg, Christian; Heck, Jürgen. "Benzo[c]thiophene Chromophores Linked to Cationic Fe and Ru Derivatives
for NLO Materials: Synthesis Characterization and Quadratic Hyperpolarizabilities". European Journal of Inorganic Chemistry
2013 20 (2013): 3506-3517. http://hdl.handle.net/10174/8945.
Publicado • 10.1002/ejic.201300048
- Robalo, João R.; Ramalho, J. P. Prates; Loura, Luís M. S.. "NBD-Labeled Cholesterol Analogues in Phospholipid Bilayers: Insights
from Molecular Dynamics". The Journal of Physical Chemistry B 117 44 (2013): 13731-13742.
Publicado • 10.1021/jp406135a
- Martins do Canto, António; Carvalho, Alfredo; Ramalho, João; Loura, Luís. "Effect of Amphipathic HIV Fusion Inhibitor Peptides
on POPC and POPC/Cholesterol Membrane Properties: A Molecular Simulation Study". International Journal of Molecular Sciences
14 7 (2013): 14724-14743.
Publicado • 10.3390/ijms140714724
- Prates Ramalho, J.P.; Illas, Francesc. "Erratum to “Assessing the importance of Van der Waals interactions on the adsorption
of azobenzene on the rutile TiO2(110) surface¿? [Chem. Phys. Lett. 545 (2012) 60]". Chemical Physics Letters 557 (2013):
194-194.
Publicado • 10.1016/j.cplett.2012.11.044
- Martins do Canto, A. M. T.; Palace Carvalho, A. J.; Prates Ramalho, J. P.; Loura, Luís M. S.. "Molecular Dynamics Simulation
of HIV Fusion Inhibitor T-1249: Insights on Peptide-Lipid Interaction". Computational and Mathematical Methods in Medicine
2012 151854 (2012): 1-14.
Publicado • 10.1155/2012/151854
- Prates Ramalho, J.P.; Illas, Francesc. "Assessing the importance of Van der Waals interactions on the adsorption of azobenzene
on the rutile TiO2(110) surface". Chemical Physics Letters 545 1 (2012): 60-65. 00092614.
Publicado • 10.1016/j.cplett.2012.07.018
- Mendes, Paulo J.; Silva, Tiago J. L.; Garcia, M. Helena; Ramalho, J. P. Prates; Carvalho, A. J. Palace. "Switchable Nonlinear
Optical Properties of ¿ 5 -Monocyclopentadienylmetal Complexes: A DFT Approach". Journal of Chemical
Information and Modeling 52 8 (2012): 1970-1983. 1549-9596.
Publicado • 10.1021/ci300226t
- Prates Ramalho, João Paulo; Illas, Francesc; Prates Ramalho, J.P.; Illas, F.. "Theoretical study of the adsorption and dissociation
of azobenzene on the rutile TiO2(110) surface". Chemical Physics Letters 501 1 (2011): 1-10. doi:10.1016/j.cplett.2010.11.007.
Publicado • 10.1016/j.cplett.2010.11.007
- Prates Ramalho, João Paulo; Carreiro, Elisabete; Burke, Anthony; Carreiro, E.P.; Ramalho, J.P.P.; Burke, A.J.. "Chiral monooxazolines
as modular copper(I)-heterocomplex building blocks: investigations on the catalytic asymmetric cyclopropanation of alkenes".
Tetrahedron 67 25 (2011): 4640-4648. doi:10.1016/j.cplett.2010.11.007dx.doi.org/10.1021/la200236dDOI: 10.1002/chir.20936doi:10.1016/j.tet.2011.04.066.
Publicado • 10.1016/j.tet.2011.04.066
- Prates Ramalho, João Paulo; Martins, Luis F.; Palace, Alfredo J.; Filipe, Eduardo. "Excess Thermodynamic Properties of Mixtures
Involving Xenon and Light Alkanes: A Study of Their Temperature Dependence by Computer Simulation". The Journal of Physical
Chemistry B 1 (2011): 1-10. doi:10.1016/j.cplett.2010.11.007dx.doi.org/10.1021/la200236dDOI: 10.1002/chir.20936doi:10.1016/j.tet.2011.04.066doi:10.3390/molecules16075437dx.doi.org/10.1021/jp2026384.
Publicado
- Do Canto, A.M.T.M.; Carvalho, A.J.P.; Ramalho, J.P.P.; Loura, L.M.S.; Prates Ramalho, João Paulo; Martins do Canto, António;
Palace Carvalho, Alfredo; Loura, Luís. "Molecular dynamics simulations of T-20 HIV fusion inhibitor interacting with model
membranes". Biophysical Chemistry 159 2-3 (2011): 275-286. http://www.scopus.com/inward/record.url?eid=2-s2.0-84860389530&partnerID=MN8TOARS.
Publicado • 10.1016/j.bpc.2011.08.001
- Loura, L.M.S.; Ramalho, J.P.P.. "Recent developments in molecular dynamics simulations of fluorescent membrane probes". Molecules
16 7 (2011): 5437-5452. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960821626&partnerID=MN8TOARS.
10.3390/molecules16075437
- Marinho, V.R.D.; Ramalho, J.P.P.; Rodrigues, A.I.; Burke, A.J.. "Evaluation of phosphinoamidoester-derived Pd catalysts in
the asymmetric allylic alkylation reaction: Theoretical studies and mechanistic insights". Chirality 23 5 (2011): 383-388.
http://www.scopus.com/inward/record.url?eid=2-s2.0-79954604121&partnerID=MN8TOARS.
10.1002/chir.20936
- Martins, L.F.G.; Palace Carvalho, A.J.; Prates Ramalho, J.P.; Filipe, E.J.M.. "Excess thermodynamic properties of mixtures
involving xenon and light alkanes: A study of their temperature dependence by computer simulation". Journal of Physical
Chemistry B 115 32 (2011): 9745-9765. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051708312&partnerID=MN8TOARS.
10.1021/jp2026384
- Prates Ramalho, J.P.; Gkeka, P.; Sarkisov, L.. "Structure and phase transformations of DPPC lipid bilayers in the presence
of nanoparticles: Insights from coarse-grained molecular dynamics simulations". Langmuir 27 7 (2011): 3723-3730. http://www.scopus.com/inward/record.url?eid=2-s2.0-79953243469&partnerID=MN8TOARS.
10.1021/la200236d
- Carvalho, A.J. Palace; Ramalho, J.P. Prates. "Molecular simulation of C60 adsorption onto a TiO2 rutile (110) surface". Applied
Surface Science 256 17 (2010): 5365-5369. 01694332.
Publicado • 10.1016/j.apsusc.2009.12.081
- Loura, Luís M.S.; Carvalho, A.J. Palace; Ramalho, J.P. Prates. "Direct calculation of Förster orientation factor of membrane
probes by molecular simulation". Journal of Molecular Structure: THEOCHEM 946 1-3 (2010): 107-112. 01661280.
Publicado • 10.1016/j.theochem.2010.01.027
- Martins do Canto, A.M.T.; Palace Carvalho, A.J.; Prates Ramalho, J.P.; Loura, Luís M.S.. "Structure and conformation of HIV
fusion inhibitor peptide T-1249 in presence of model membranes: A molecular dynamics study". Journal of Molecular Structure:
THEOCHEM 946 1-3 (2010): 119-124. 01661280.
Publicado • 10.1016/j.theochem.2009.12.010
- Mendes, Paulo J.; Silva, Tiago J.L.; Carvalho, A.J. Palace; Ramalho, J.P. Prates. "DFT studies on thiophene acetylide Ru(II)
complexes for nonlinear optics: Structure–function relationships and solvent effects". Journal of Molecular Structure:
THEOCHEM 946 1-3 (2010): 33-42. 01661280.
Publicado • 10.1016/j.theochem.2010.01.029
- Marinho, Vanda Raquel; Ramalho, J. P. Prates; Rodrigues, Ana I.; Burke, Anthony J.. "A Comparison of ( R
, R )-Me-DUPHOS and ( R , R )-DUPHOS-
i Pr Ligands in the Pd 0 -Catalysed Asymmetric Allylic Alkylation Reaction: Stereochemical
and Kinetic Considerations". European Journal of Organic Chemistry 2010 8 (2010): 1593-1593. 1434193X.
Publicado • 10.1002/ejoc.201000047
- Gomes, J.R.B.; Ramalho, J.P. Prates; Illas, F.. "Adsorption of Xe atoms on the TiO2(110) surface: A density functional study".
Surface Science 604 3-4 (2010): 428-434. 00396028.
Publicado • 10.1016/j.susc.2009.12.009
- Marques, Carolina S.; Ramalho, J. P. Prates; Burke, Anthony J.. "The benzilic ester rearrangement: synthesis of labelled compounds
and theoretical studies". Journal of Physical Organic Chemistry 22 8 (2009): 735-739. 08943230.
Publicado • 10.1002/poc.1509
- Carreiro, Elisabete Palma; Burke, Anthony J.; Ramalho, J.P. Prates; Rodrigues, Ana Isabel. "Arylid-OX and Arylid-BOX derived
catalysts: applications in catalytic asymmetric cyclopropanation". Tetrahedron: Asymmetry 20 11 (2009): 1272-1278.
09574166.
Publicado • 10.1016/j.tetasy.2009.04.005
- Mendes, Paulo J.; Carvalho, A.J. Palace; Ramalho, J.P. Prates. "Role played by the organometallic fragment on the first hyperpolarizability
of iron–acetylide complexes: A TD-DFT study". Journal of Molecular Structure: THEOCHEM 900 1-3 (2009): 110-117.
Publicado • 10.1016/j.theochem.2008.12.037
- Loura, Luís M. S.; Prates Ramalho, J. P.. "Fluorescent membrane probes’ behavior in lipid bilayers: insights from molecular
dynamics simulations". Biophysical Reviews 1 3 (2009): 141-148. 1867-2450.
Publicado • 10.1007/s12551-009-0016-5
- Martins Do Canto, António M. T.; Palace Carvalho, A. J.; Prates Ramalho, J. P.; Loura, Luís M. S.. "T-20 and T-1249 HIV fusion
inhibitors' structure and conformation in solution: a molecular dynamics study". Journal of Peptide Science 14 4 (2008):
442-447. 10752617.
Publicado • 10.1002/psc.982
- Loura, Luís M.S.; Fernandes, Fábio; Fernandes, A.C.; Ramalho, J.P. Prates. "Effects of fluorescent probe NBD-PC on the structure,
dynamics and phase transition of DPPC. A molecular dynamics and differential scanning calorimetry study". Biochimica et
Biophysica Acta (BBA) - Biomembranes 1778 2 (2008): 491-501.
Publicado • 10.1016/j.bbamem.2007.10.022
- Carreira, M.; Candeias, A.E.; Manhita, A.; Costa, C.T.; Mendes, P.J.; Carvalho, A.J.P.; Ramalho, J.P.P.; et al. "Theoretical
study on the influence of iron mordant in the optical properties of natural dyes". Materials Science Forum 587-588
587 (2008): 608-612. http://www.scopus.com/inward/record.url?eid=2-s2.0-60349117811&partnerID=MN8TOARS.
Publicado • 10.4028/www.scientific.net/MSF.587-588.608
- Burke, Anthony J.; Palma Carreiro, Elisabete da; Chercheja, Serghei; Moura, Nuno M.M.; Prates Ramalho, J.P.; Rodrigues, Ana
Isabel; dos Santos, Carla I.M.. "Cu(I) catalysed cyclopropanation of olefins: Stereoselectivity studies with Arylid-Box and
Isbut-Box ligands". Journal of Organometallic Chemistry 692 22 (2007): 4863-4874.
Publicado • 10.1016/j.jorganchem.2007.06.068
- Rakhmatkariev, G. U.; Palace Carvalho, A. J.; Prates Ramalho, J. P.. "Adsorption of Normal Pentane on the Surface of Rutile.
Experimental Results and Simulations". Langmuir 23 14 (2007): 7555-7561.
Publicado • 10.1021/la063113q
- Carvalho, A. J. Palace; Ramalho, J. P. Prates; Martins, Luís F. G.. "Excess Thermodynamics of Mixtures Involving Xenon and
Light Linear Alkanes by Computer Simulation". The Journal of Physical Chemistry B 111 23 (2007): 6437-6443.
Publicado • 10.1021/jp070936v
- CARVALHO, A; RAMALHO, J; VILLIERAS, F. "Simulation study of argon adsorption on (001) faces of phyllosilicates". Applied
Surface Science 253 13 (2007): 5628-5632.
Publicado • 10.1016/j.apsusc.2006.12.081
- LOURA, L; RAMALHO, J. "Location and dynamics of acyl chain NBD-labeled phosphatidylcholine (NBD-PC) in DPPC bilayers. A molecular
dynamics and time-resolved fluorescence anisotropy study". Biochimica et Biophysica Acta (BBA) - Biomembranes 1768
3 (2007): 467-478.
Publicado • 10.1016/j.bbamem.2006.10.011
- J. P. Prates Ramalho; A. J. P. Carvalho; Rakhmatkariev, G.U.; Palace Carvalho, A.J.; Ramalho, J.P.. "Experimental and simulation
study of n-heptane adsorption on rutile". ADSORPTION SCIENCE & TECHNOLOGY 25 7 (2007): 517-530. http://www.scopus.com/inward/record.url?eid=2-s2.0-44449128838&partnerID=MN8TOARS.
Publicado
- RAMALHO, J; RABINOVICH, A; YEREMICH, D; TOVBIN, Y. "Surface topography problem and argon adsorption on crystalline faces:
Monte-Carlo and lattice-gas model simulations". Applied Surface Science 252 3 (2005): 529-537.
Publicado • 10.1016/j.apsusc.2005.02.113
- Mendes, P.J.; Ramalho, J.P. Prates; Candeias, A.J.E.; Robalo, M.P.; Garcia, M.H.. "Density functional theory calculations
on ¿5-monocyclopentadienylnitrilecobalt complexes concerning their second-order nonlinear optical properties". Journal
of Molecular Structure: THEOCHEM 729 1-2 (2005): 109-113.
Publicado • 10.1016/j.theochem.2004.12.048
- Palace Carvalho, A.J.; Ferreira, T.; Estêvão Candeias, A.J.; Prates Ramalho, J.P.. "Molecular simulations of nitrogen adsorption
in pure silica MCM-41 materials". Journal of Molecular Structure: THEOCHEM 729 1-2 (2005): 65-69.
Publicado • 10.1016/j.theochem.2005.01.057
- da Plama Carreiro, Elisabete; Chercheja, Serghei; Burke, Anthony J.; Ramalho, J.P. Prates; Rodrigues, Ana Isabel. "Isbut-Box:
A new chiral C2 symmetric bis-oxazoline for catalytic enantioselective synthesis". Journal of Molecular Catalysis A: Chemical
236 1-2 (2005): 38-45.
Publicado • 10.1016/j.molcata.2005.04.011
- Gomes, J.; Prates Ramalho, J.. "Adsorption of Ar atoms on the relaxed defect-free TiO2(110) surface". Physical Review B
71 23 (2005): 1-2.
Publicado • 10.1103/PhysRevB.71.235421
- Mudring, Anja-Verena; Jansen, Martin; Daniels, Jörg; Krämer, Steffen; Mehring, Michael; Prates Ramalho, Joao Paulo; Romero,
Aldo Humberto; Parrinello, Michele. "Cesiumauride Ammonia (1/1), CsAu·NH3: A Crystalline Analogue to Alkali Metals Dissolved
in Ammonia?". Angewandte Chemie International Edition 41 1 (2002): 120-124.
Publicado • 10.1002/1521-3773(20020104)41:1<120::AID-ANIE120>3.0.CO;2-6
- Bushenkov, Vladimir A.; Ramalho, J. P. Prates; Smirnov, Georgi V.; Bushenkov, V.A.; Ramalho, J.P.P.; Smirnov, G.V.. "Adsorption
integral equation via complex approximation with constraints: kernel of general form". Journal of Computational Chemistry
22 10 (2001): 1058-1066. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035974522&partnerID=MN8TOARS.
Publicado • 10.1002/jcc.1066.abs
- J. P. Prates Ramalho; G. V. Smirnov; Prates Ramalho, J.P.; Smirnov, G.V.. "On the structure of a local isotherm and solution
to the adsorption integral equation". LANGMUIR 16 4 (2000): 1918-1923. http://www.scopus.com/inward/record.url?eid=2-s2.0-0343603408&partnerID=MN8TOARS.
Publicado • 10.1021/la990746e
- Bushenkov, V.A.; Ramalho, J.P.P.; Smirnov, G.V.. "Adsorption Integral Equation via Complex Approximation with Constraints:
The Langmuir Kernel". Journal of Computational Chemistry 21 3 (2000): 191-200. http://www.scopus.com/inward/record.url?eid=2-s2.0-0345855207&partnerID=MN8TOARS.
- Ferreira, A.L.C.; Pacheco, J.M.; Prates-Ramalho, J.P.. "Phase diagram of C60 from ab initio intermolecular potential".
Journal of Chemical Physics 113 2 (2000): 738-743. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034228394&partnerID=MN8TOARS.
10.1063/1.481867
- Pacheco, J.; Prates Ramalho, J.. "First-Principles Determination of the Dispersion Interaction between Fullerenes and Their
Intermolecular Potential". Physical Review Letters 79 20 (1997): 3873-3876.
Publicado • 10.1103/PhysRevLett.79.3873
- Carrott, P.J.M.; Carrott, M.M.L.R.; Nabais, J.M.V.; Ramalho, J.P.P.; Carrott, P; Prates Ramalho, J P. "Influence of surface
ionization on the adsorption of aqueous zinc species by activated carbons". Carbon 35 3 (1997): 403-410. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030645151&partnerID=MN8TOARS.
Publicado • 10.1016/S0008-6223(97)89611-X
- Silva Fernandes, F.M.S.; Prates Ramalho, J.P.; Martins Freitas, F.F.; Fernandes, F. M. S. Silva; Ramalho, J. P. Prates; Freitas,
F. F. Martins. "High dimensional geometry in statistical mechanics. A new microcanonical sampling method". Pure and Applied
Chemistry 68 8 (1996): 1509-1514. http://www.scopus.com/inward/record.url?eid=2-s2.0-2742611412&partnerID=MN8TOARS.
Publicado • 10.1351/pac199668081509
- Fernandes, Fernando M.S.Silva; Ramalho, J.P.Prates. "Hypervolumes in microcanonical Monte Carlo". Computer Physics Communications
90 1 (1995): 73-80.
Publicado • 10.1016/0010-4655(95)00075-Q
- Fernandes, P.A.; Carvalho, A.P.; Ramalho, J.P.P.; Fernandes, Pedro Alexandrino; Carvalho, Alfredo Palace; Ramalho, J. P. Prates.
"Path integral Monte Carlo simulations: Study of the efficiency of energy estimators". The Journal of Chemical Physics
103 13 (1995): 5720-5724. http://www.scopus.com/inward/record.url?eid=2-s2.0-0000945185&partnerID=MN8TOARS.
Publicado • 10.1063/1.470554
- Carrott, P.J.M.; Carrott, M.M.L.R.; Candeias, A.J.E.; Ramalho, J.P.P.; Carrott, P. J. M.; Carrott, M. M. L. Ribeiro; Candeias,
A. J. Estev¿o; Ramalho, J. P. Prates. "Numerical simulation of surface ionisation and specific adsorption on a two-site model
of a carbon surface". Journal of the Chemical Society, Faraday Transactions 91 14 (1995): 2179-2184. http://www.scopus.com/inward/record.url?eid=2-s2.0-37049074312&partnerID=MN8TOARS.
Publicado • 10.1039/FT9959102179
- Ramalho, J. "Light metal ions in water: Quantal and classical simulations for 7Li+". Journal of Molecular Liquids 60
1-3 (1994): 237-249.
Publicado • 10.1016/0167-7322(94)00747-0
- Ramalho, J. P. Prates; Cabral, B. J. Costa; Fernandes, F. M. S. Silva; Prates Ramalho, J.P.; Costa Cabral, B.J.; Silva Fernandes,
F.M.S.. "Improved propagators for the path integral study of quantum systems". The Journal of Chemical Physics 98 4
(1993): 3300-3300. http://www.scopus.com/inward/record.url?eid=2-s2.0-0039382982&partnerID=MN8TOARS.
Publicado • 10.1063/1.464101
- Prates Ramalho, J.P.; Costa Cabral, B.J.; Silva Fernandes, F.M.S.. "A Monte Carlo and transfer-matrix grid path-integral study
of the vibrational structure of Br2 in solid argon". Chemical Physics Letters 184 1-3 (1991): 53-60. http://www.scopus.com/inward/record.url?eid=2-s2.0-0013020117&partnerID=MN8TOARS.
10.1016/0009-2614(91)87163-6
- Ramalho, J.P.P.; Fernandes, F.M.S.. "The Transfer Matrix Grid Method for Quantum Partition Functions, Eigenvalues and Eigenfunctions".
Zeitschrift fur Naturforschung - Section A Journal of Physical Sciences 45 9-10 (1990): 1193-1198. http://www.scopus.com/inward/record.url?eid=2-s2.0-20844458796&partnerID=MN8TOARS.
10.1515/zna-1990-9-1019
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