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Rodrigo Costa is an Associate Professor (since 2020) at the Department of Bioengineering (DBE) of Instituto Superior Técnico (IST), University of Lisbon. He graduated in Biological Sciences at the Federal University of Rio de Janeiro, Brazil, in 1998 and obtained his M.Sc. degree in Ecology from this same University in 2001. He acquired his Ph.D. degree in Life Sciences from the Technical University of Braunschweig, Germany, in 2006, and was a post-doctoral fellow at the University of Groningen, The Netherlands, from 2006 to 2008. He was then awarded the Research Scientist contracts Ciência (2008) and FCT Investigator (2015) from the Portuguese Foundation for Science and Technology (FCT). During this period, he founded and led the Microbial Ecology and Evolution Research Group (MicroEcoEvo) at the Centre of Marine Sciences (CCMar), Algarve University, Portugal, where he built a novel molecular microbiology laboratory acquired through extramural funding. Prof. Rodrigo Costa was an invited affiliate (Research Scientist) of the Lawrence Berkeley National Laboratory (LBNL), University of California at Berkeley, USA (March 2019-August 2021), and of CCMAR from 2016 to 2021. He holds the position (by invitation) of Ambassador of the International Society for Microbial Ecology (ISME) in Portugal, is an invited member of the Editorial Board of Scientific Reports, and member of three academic societies. In 2019, he chaired the International Symposium on Bacterial Genetics and Ecology (BAGECO) in Lisbon, Portugal, and since then is a member of the steering scientific committee of the symposium. Prof. Costa has authored > 100 scientific publications encompassing original research articles in international journals, book chapters, and theses. His published work has been cited c. 7,400 times, featuring an h-index of 45, an i-10 index of 70, and studies published in top-ranked, multidisciplinary journals such as Microbiomes, The ISME Journal, Nature Communications, Nature Microbiology, Science of the Total Environment, mSystems, and Environmental Microbiology, among others. Prof. Costa participated in over 220 communications (> 80 oral) in scientific conferences, workshops, and colloquia. Since 2010, he supervised several post-doctoral fellows, Ph.D., M.Sc., and undergraduate students - in the framework of 19 R&D projects (10 as PI / Co-PI), leading six PhD thesis (five ongoing) and 28 Master thesis (eight ongoing) completions, and securing > 2 MEuros extramural research funding in the last five years. Prof. Rodrigo Costa is the coordinator of the course units Fundamentals of Ecology and Microbiomes at IST/ULisbon, being awarded by students with the Excellence in Teaching prize in several disciplines across the years. His research addresses the diversity and function of microorganisms in natural and fabricated biomes - with emphasis on Eukaryote-Prokaryote symbioses studied with metagenomics approaches -, their implications to host/ecosystem health and climate regulation, and potential use as renewable sources of innovative biotechnological appliances. Current research projects focus on harnessing the metabolism of bacterial symbionts of marine organisms and developing microbiome engineering approaches to (i) suppress microbial diseases and mitigate climate change stressors in aquaculture and coral reef ecosystems, and (ii) design marine-based bioproducts of application across multiple sectors (e.g., health, environment, food, and feed) to leverage the circular blue bioeconomy. Prof. Costa belongs to the group of fifteen specialists invited by the Portuguese Government in 2023 to propose a package of legislative, financial, and scientific competitive measures for the development of the Blue Biotechnology Sector in Portugal. Full CV: https://drive.google.com/file/d/1TEj7hpMElFkqLhJSL9OEMzBqmafYvVGC/view?usp=sharing
Identificação

Identificação pessoal

Nome completo
Rodrigo da Silva Costa

Nomes de citação

  • Costa, Rodrigo

Identificadores de autor

Ciência ID
5917-D500-D251
ORCID iD
0000-0002-5932-4101

Endereços de correio eletrónico

  • rodrigoscosta@tecnico.ulisboa.pt (Profissional)

Telefones

Telefone
  • 218417339 Ext.: 1339 (Profissional)

Moradas

  • Av Rovisco Pais 1, Instituto Superior Técnico, Dep. de Bioengenharia, Alameda Campus, 1049-001, Lisbon, Lisbon, Portugal (Profissional)

Websites

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Biologia

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Português (Idioma materno)
Inglês Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2)
Alemão Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1)
Formação
Grau Classificação
2002 - 2006
Concluído
Natural Sciences (Doctor)
Technische Universität Braunschweig, Alemanha
Magna cum laude
1999 - 2001
Concluído
Ecology (Master)
Universidade Federal do Rio de Janeiro, Brasil
Summa cum laude
1995 - 1998
Concluído
Biological Sciences (Bachelor)
Especialização em Ecology
Universidade Federal do Rio de Janeiro, Brasil
Cum laude (8.4 in 10)
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento
Empregador
2016 - Atual Investigador principal (carreira) (Investigação) Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2019/03 - 2021/08 Investigador principal convidado (carreira) (Investigação) E O Lawrence Berkeley National Laboratory, Estados Unidos
2014/10 - 2020/03 Investigador principal (carreira) (Investigação) Centro de Ciências do Mar, Portugal
Centro de Ciências do Mar, Portugal
2008/10 - 2013/09 Investigador Auxiliar (carreira) (Investigação) Centro de Ciências do Mar, Portugal
Centro de Ciências do Mar, Portugal
2006/08 - 2008/09 Pós-doutorado (Investigação) Rijksuniversiteit Groningen, Países Baixos
Rijksuniversiteit Groningen, Países Baixos

Docência no Ensino Superior

Categoria Profissional
Instituição de acolhimento
Empregador
2020/08/01 - Atual Professor Associado (Docente Universitário) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016/04 - Atual Professor Auxiliar (Docente Universitário) Universidade de Lisboa Instituto Superior Técnico, Portugal
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Projetos

Bolsa

Designação Financiadores
2006/08/01 - 2008/07/31 Evolution of bacterial antibiotic-encoding genes and their role in soil microbial community diversity
Soil Biotechnology Foundation
Bolseiro de Pós-Doutoramento
Rijksuniversiteit Groningen, Países Baixos
Concluído
2002/04/01 - 2006/06/05 Microbial community structure and function in the rhizosphere of crop plants
DAAD Grant
Bolseiro de Doutoramento
Technische Universität Braunschweig, Alemanha
1999 - 2001 Genetic diversity and variability of bacterial communities associated with the maize rhizosphere in an arable land in Rio de Janeiro, Brazil
CAPES Grant
Bolseiro de Mestrado
Universidade Federal do Estado do Rio de Janeiro, Brasil
Concluído

Projeto

Designação Financiadores
2023/03 - Atual Blue Bioeconomy Pact
C632741873-00467082
Investigador responsável
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Agência para a Competitividade e Inovação IP
Em curso
2022/01/01 - Atual ChicoBionts - Harnessing the catalyst power of host-microbe interactions: a quest for novel chitinases from octocoral symbionts
EXPL/BIA-MIC/0286/2021
Investigador
Fundação para a Ciência e a Tecnologia
Em curso
2019/03 - 2026/02 GEBA - Genomic Encyclopeadia of Bacteria and Archaea
GEBA - Genomic Encyclopeadia of Bacteria and Archaea
Investigador
DOE Joint Genome Institute, Estados Unidos
DOE Joint Genome Institute
Em curso
2021/01/01 - 2025/12/31 Institute for Health and Bioeconomy
LA/P/0140/2020
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Universidade Nova de Lisboa, Portugal

INESC Microsistemas e Nanotecnologias, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Universidade Nova de Lisboa Associação para a Inovação e Desenvolvimento da FCT, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2020/08 - 2022/07 Aquatic Symbiosis Genomics Project
Investigador
Wellcome Sanger Institute, Reino Unido
Wellcome Sanger Institute
Em curso
2019/10 - 2021/09 SymbioReactor: sustainable production of bioactive metabolites from microbial symbionts of marine sponges and corals
FA_05_2017_032
Investigador responsável
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Universidade de Lisboa Instituto Superior Técnico, Portugal
Direção-Geral de Política do Mar - Ministério do Mar
Em curso
2018/08 - 2021/07 MicroControl: Exploiting the healing capacity of nature´s microbiomes for improved fish larviculture"
031996
Investigador responsável
Universidade de Lisboa Instituto Superior Técnico, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Portuguese Foundation for Science and Technology
Concluído
2016/07 - 2020/06 Harnessing the power of the microbial metamobilome: using marine sponges as models to uncover novel biotechnological appliances from symbiont communities
Investigador responsável
Universidade de Lisboa Instituto Superior Técnico, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Fundação para a Ciência e a Tecnologia
2016/03/01 - 2020/05/31 Harnessing the power of host-microbe interactions: diversity, function and biotechnology of marine symbioses in a changing climate
IF/01076/2014/CP1268/CT0001
Universidade de Lisboa Instituto Superior Técnico, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2019/01/01 - 2019/12/31 Centre of Marine Sciences
UID/Multi/04326/2019
Centro de Ciências do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2019/01/01 - 2019/12/31 Institute for Bioengineering and Biosciences
UID/BIO/04565/2019
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2015/06/01 - 2016/02/29 Harnessing the power of host-microbe interactions: diversity, function and biotechnology of marine symbioses in a changing climate
IF/01076/2014/CP1217/CT0003
Centro de Ciências do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2015/01 - 2015/12 Functional and taxonomic profiling of microbial communities in caves of the Algarve, Southern Portugal
Not applicable
Orientador
National Speleological Foundation
2014/08 - 2015/08 Deciphering the codes of communication between marine sponges and their symbionts: an integrative metabolomics-transcriptomics approach (additional support for Europe)
Investigador
VolkswagenStiftung
Concluído
2014/03 - 2015/08 Illuminating the metabolism of foundational and elusive microbial symbionts in benthic ecosystems: a cultivation-independent quest for Hahellaceae (Gammaproteobacteria, Oceanospirillales) genomes
EXPL/MAR-EST/1664/2013
Orientador
Centro de Ciências do Mar, Portugal
Portuguese Foundation for Science and Technology (FCT)
Concluído
2013/06 - 2015/05 Single cell genomics and metagenomics-aided cultivation of the unculturable: uncovering the function and metabolic features of Acidobacteria symbionts of marine sponges
Investigador responsável
Centro de Ciências do Mar, Portugal
Associação para a Inovação e Desenvolvimento da FCT
Concluído
2012 - 2015 Sponge Microbiomes in Times of Global Change - A Contribution to the Earth Microbiome Project
DE-AC02-06CH11357
Investigador
Centro de Ciências do Mar, Portugal
Concluído
2011/06 - 2014/12 Waterborne seaweed metabolites as a green solution for antimicrobial therapy in aquaculture
112792
Investigador
Portuguese Foundation for Science and Technology (FCT)
2014/06 - 2014/08 Will an increase in extreme temperature anomalies limit the ability of marine organisms to adapt to long-term climate change
AdaptChange
Orientador
Research Executive Agency
Concluído
2012/01 - 2013/12 Rules of attraction: unveiling bacterial behavior in a host-driven chemical sphere
daad130764425719792
Investigador responsável
Portuguese Foundation for Science and Technology (FCT)
2010/04 - 2013/10 Global climate change and pollution: a synergy designed for disaster?
Investigador
Universidade de Coimbra
Concluído
2011/09 - 2013/08 SEAWEED AD: anaerobic digestion of seaweed for biofuels
274373
Investigador
Research Executive Agency
2010/01 - 2013/06 Unlocking the bacterial diversity encrypted in the metagenomes of marine sponges
Investigador responsável
Centro de Ciências do Mar, Portugal
Universidade de Coimbra
2011/01/01 - 2012/12/31 Strategic Project - LA 15 - 2011-2012
PEst-C/MAR/LA0015/2011
Centro de Investigação Marinha e Ambiental, Portugal

Universidade do Porto Faculdade de Desporto, Portugal

Centro de Ciências do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
Produções

Publicações

Artigo em conferência
  1. Costa, Rodrigo. "Tackling the specificity of the marine sponge microbiome: a biogeographical approach". Trabalho apresentado em 2nd International Conference on Microbial Diversity: Microbial Interactions in Complex Ecosystems, 2013.
    Publicado
  2. Wichard, T.; Costa, Rodrigo; Grueneberg, J.; Engelen, A.. "Chemosphere of the marine green alga Ulva: induction of algal morphogenesis by bacterial compounds". 2011.
  3. Berg, G., Opelt, K., Zachow, C., Götz, M. Costa, R. & Smalla, K.. "Molecular ecology of fungal and bacterial Verticillium antagonists in/on different host plants and soils". 2007.
    Publicado
  4. Costa, Rodrigo. "Monitoring gfp-tagged bacterial antagonists in the rhizosphere of tomato plants". Trabalho apresentado em Multitrophic Interactions in Soil and Integrated Control, 2003.
    Publicado
Artigo em jornal
  1. Costa, Rodrigo; Isabel Sá-Correia. "Microbiologia Azul: Pilar da Bioeconomia do mar, Jornal i online, artigo de opinião de 11 de Janeiro de 2022", 2022, https://ionline.sapo.pt/artigo/758885/microbiologia-azul-pilar-da-bioeconomia-do-mar?seccao=Opiniao_ihttps://ionline.sapo.pt/artigo/758885/microbiologia-azul-pilar-da-bioeconomia-do-mar?seccao=Opiniao_i.
Artigo em revista
  1. Pascoal, Francisco; Duarte, Pedro; Assmy, Philipp; Costa, Rodrigo; Magalhães, Catarina. "Full-length 16S rRNA gene sequencing combined with adequate database selection improves the description of Arctic marine prokaryotic communities". Annals of Microbiology 74 1 (2024): http://dx.doi.org/10.1186/s13213-024-01767-6.
    10.1186/s13213-024-01767-6
  2. Joana F. Couceiro; Matilde Marques; Sandra G. Silva; Tina Keller-Costa; Rodrigo Costa. "Aquimarina aquimarini sp. nov. and Aquimarina spinulae sp. nov., novel bacterial species with versatile natural product biosynthesis potential isolated from marine sponges". International Journal of Systematic and Evolutionary Microbiology (2024): https://doi.org/10.1099/ijsem.0.006228.
    10.1099/ijsem.0.006228
  3. Sandra Godinho Silva; Masun Nabhan Homsi; Tina Keller-Costa; Ulisses Rocha; Rodrigo Costa; Marnix Medema. "Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon". mSystems (2023): https://doi.org/10.1128/msystems.00643-23.
    10.1128/msystems.00643-23
  4. Rocha, Ulisses; Coelho Kasmanas, Jonas; Kallies, René; Saraiva, Joao Pedro; Toscan, Rodolfo Brizola; Štefanic, Polonca; Bicalho, Marcos Fleming; et al. "MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy". Molecular Ecology Resources 24 2 (2023): http://dx.doi.org/10.1111/1755-0998.13904.
    Publicado • 10.1111/1755-0998.13904
  5. Rocha, Ulisses; Coelho Kasmanas, Jonas; Kallies, René; Saraiva, Joao Pedro; Toscan, Rodolfo Brizola; Štefanic, Polonca; Bicalho, Marcos Fleming; et al. "MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy". Molecular Ecology Resources 24 2 (2023): http://dx.doi.org/10.1111/1755-0998.13904.
    10.1111/1755-0998.13904
  6. Rocha, Ulisses; Coelho Kasmanas, Jonas; Kallies, René; Saraiva, Joao Pedro; Toscan, Rodolfo Brizola; Štefanic, Polonca; Bicalho, Marcos Fleming; et al. "MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy". Molecular Ecology Resources 24 2 (2023): http://dx.doi.org/10.1111/1755-0998.13904.
    10.1111/1755-0998.13904
  7. Daniela M. G. da Silva; Filipa R. Pedrosa; M. Ângela Taipa; Rodrigo Costa; Tina Keller-Costa. "Widespread occurrence of chitinase-encoding genes suggests the Endozoicomonadaceae family as a key player in chitin processing in the marine benthos". ISME Communications (2023): https://doi.org/10.1038/s43705-023-00316-7.
    10.1038/s43705-023-00316-7
  8. Pascoal, Francisco; Tomasino, Maria Paola; Piredda, Roberta; Quero, Grazia Marina; Torgo, Luís; Poulain, Julie; Galand, Pierre E.; et al. "Inter-comparison of marine microbiome sampling protocols". ISME Communications 3 1 (2023): http://dx.doi.org/10.1038/s43705-023-00278-w.
    10.1038/s43705-023-00278-w
  9. Roveta, Camilla; Calcinai, Barbara; Girolametti, Federico; Fernandes Couceiro, Joana; Puce, Stefania; Annibaldi, Anna; Costa, Rodrigo. "The prokaryotic community of Chondrosia reniformis Nardo, 1847: from diversity to mercury detection". Zoology 158 (2023): 126091. http://dx.doi.org/10.1016/j.zool.2023.126091.
    Publicado • 10.1016/j.zool.2023.126091
  10. João Fragoso Almeida; Matilde Marques; Vanessa Oliveira; Conceição Egas; Dalila Mil-Homens; Romeu Viana; Daniel F. R. Cleary; et al. "Marine Sponge and Octocoral-Associated Bacteria Show Versatile Secondary Metabolite Biosynthesis Potential and Antimicrobial Activities Against Human Pathogens". Marine Drugs (2022): https://www.mdpi.com/1660-3397/21/1/34.
    10.3390/md21010034
  11. Oliveira, Vanessa; Polónia, Ana R.M.; Cleary, Daniel F.R.; Huang, Yusheng M.; de Voogd, Nicole J.; Keller-Costa, Tina; Costa, Rodrigo; Gomes, Newton C.M.. "Assessing the genomic composition, putative ecological relevance and biotechnological potential of plasmids from sponge bacterial symbionts". Microbiological Research 265 (2022): 127183. http://dx.doi.org/10.1016/j.micres.2022.127183.
    10.1016/j.micres.2022.127183
  12. Nata’ala, Muhammad Kabiru; Avila Santos, Anderson P.; Coelho Kasmanas, Jonas; Bartholomäus, Alexander; Saraiva, João Pedro; Godinho Silva, Sandra; Keller-Costa, Tina; et al. "MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes". Environmental Microbiome 17 1 (2022): http://dx.doi.org/10.1186/s40793-022-00449-7.
    Publicado • 10.1186/s40793-022-00449-7
  13. Joana Fernandes Couceiro; Tina Keller-Costa; Nikos C. Kyrpides; Tanja Woyke; William B. Whitman; Rodrigo Costa; Frank J. Stewart. "Genome Sequencing Suggests Diverse Secondary Metabolism in Coral-Associated Aquimarina megaterium". Microbiology Resource Announcements (2022): https://doi.org/10.1128/mra.00620-22.
    10.1128/mra.00620-22
  14. Keller-Costa, Tina; Kozma, Lydia; Silva, Sandra G.; Toscan, Rodolfo; Gonçalves, Jorge; Lago-Lestón, Asunción; Kyrpides, Nikos C.; Nunes da Rocha, Ulisses; Costa, Rodrigo. "Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome". Microbiome 10 1 (2022): http://dx.doi.org/10.1186/s40168-022-01343-7.
    Publicado • 10.1186/s40168-022-01343-7
  15. Lígia F. Coelho; Marie-Amélie Blais; Alex Matveev; Tina Keller-Costa; Warwick F. Vincent; Rodrigo Costa; Zita Martins; João Canário. "Contamination analysis of Arctic ice samples as planetary field analogs and implications for future life-detection missions to Europa and Enceladus". Scientific Reports (2022): https://doi.org/10.1038/s41598-022-16370-5.
    10.1038/s41598-022-16370-5
  16. Sanches-Fernandes, Gracinda M. M.; Sá-Correia, Isabel; Costa, Rodrigo. "Vibriosis Outbreaks in Aquaculture: Addressing Environmental and Public Health Concerns and Preventive Therapies Using Gilthead Seabream Farming as a Model System". Frontiers in Microbiology 13 (2022): http://dx.doi.org/10.3389/fmicb.2022.904815.
    Publicado • 10.3389/fmicb.2022.904815
  17. Sandra Godinho Silva; Patrícia Paula; José Paulo da Silva; Dalila Mil-Homens; Miguel Cacho Teixeira; Arsénio Mendes Fialho; Rodrigo Costa; Tina Keller-Costa. "Insights into the Antimicrobial Activities and Metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) Species from the Rare Marine Biosphere". Marine Drugs 20 7 (2022): 423-423. https://doi.org/10.3390/md20070423.
    10.3390/md20070423
  18. Coelho, Lígia Fonseca; Couceiro, Joana Fernandes; Keller-Costa, Tina; Valente, Sara Martinez; Ramalho, Tiago Pereirinha; Carneiro, Joana; Comte, Jérôme; et al. Autor correspondente: Costa, Rodrigo. "Structural shifts in sea ice prokaryotic communities across a salinity gradient in the subarctic". Science of The Total Environment 827 (2022): 154286. http://dx.doi.org/10.1016/j.scitotenv.2022.154286.
    10.1016/j.scitotenv.2022.154286
  19. Gracinda M. M. Sanches-Fernandes; Gianmaria Califano; Sara Castanho; Florbela Soares; Laura Ribeiro; Pedro Pousão-Ferreira; Leonardo Mata; Rodrigo Costa. "Effects of live feed manipulation with algal-derived antimicrobial metabolites on fish larvae microbiome assembly: A molecular-based assessment". Aquaculture Research (2022): https://doi.org/10.1111/are.15648.
    10.1111/are.15648
  20. "Peixoto, R., Voolstra, C.V., Sweet, M., Duarte, C.M., Carvalho, S., Villela, H., Lunshof, J.E., Walter, J., Woodhams, D.C., Walke, J.B., Gram, L., Roik, A., Hentschel, U., Thurber, R.V., Daisley, B., Ushijima, B., Daffonchio, D., Costa, R., Keller-Costa, T., et al. Implementing microbiome stewardship in rapidly declining ecosystems.". Nature Microbiology (2022):
    Aceite para publicação
  21. Dieterich, Cora L.; Probst, Silke I.; Ueoka, Reiko; Sandu, Ioana; Schäfle, Daniel; Molin, Michael Dal; Minas, Hannah A.; et al. "Aquimarins, Peptide Antibiotics with Amino-Modified C-Termini from a Sponge-Derived Aquimarina sp. Bacterium". Angewandte Chemie 134 8 (2021): http://dx.doi.org/10.1002/ange.202115802.
    10.1002/ange.202115802
  22. Coelho, Lígia F.; Madden, Jack; Kaltenegger, Lisa; Zinder, Stephen; Philpot, William; Esquível, M. Glória; Canário, João; et al. "Color Catalogue of Life in Ice: Surface Biosignatures on Icy Worlds". Astrobiology (2021): http://dx.doi.org/10.1089/ast.2021.0008.
    10.1089/ast.2021.0008
  23. I. Raimundo; R. Silva; L. Meunier; S. M. Valente; A. Lago-Lestón; T. Keller-Costa; R. Costa. "Functional metagenomics reveals differential chitin degradation and utilization features across free-living and host-associated marine microbiomes". Microbiome 9 1 (2021): https://doi.org/10.1186/s40168-020-00970-2.
    10.1186/s40168-020-00970-2
  24. Gracinda M. M. Sanches-Fernandes; Gianmaria Califano; Tina Keller-Costa; Sara Castanho; Florbela Soares; Laura Ribeiro; Pedro Pousão-Ferreira; et al. "Draft Genome Sequence of Vibrio jasicida 20LP, an Opportunistic Bacterium Isolated from Fish Larvae". Microbiology Resource Announcements 10 44 (2021): https://doi.org/10.1128/MRA.00813-21.
    10.1128/MRA.00813-21
  25. Gracinda M. M. Sanches-Fernandes; Gianmaria Califano; Tina Keller-Costa; Sara Castanho; Florbela Soares; Laura Ribeiro; Pedro Pousão-Ferreira; et al. "Draft Genome Sequence of Vibrio chagasii 18LP, Isolated from Gilthead Seabream (Sparus aurata) Larvae Reared in Aquaculture". Microbiology Resource Announcements (2021): https://doi.org/10.1128/MRA.00658-21.
    10.1128/MRA.00658-21
  26. Joana Fernandes Couceiro; Tina Keller-Costa; Matilde Marques; Nikos C. Kyrpides; Tanja Woyke; William B. Whitman; Rodrigo Costa; J. Cameron Thrash. "The Roseibium album (Labrenzia alba) Genome Possesses Multiple Symbiosis Factors Possibly Underpinning Host-Microbe Relationships in the Marine Benthos". Microbiology Resource Announcements (2021): https://doi.org/10.1128/MRA.00320-21.
    10.1128/MRA.00320-21
  27. Pascoal, Francisco; Costa, Rodrigo; Assmy, Philipp; Duarte, Pedro; Magalhães, Catarina. "Exploration of the Types of Rarity in the Arctic Ocean from the Perspective of Multiple Methodologies". Microbial Ecology (2021): http://dx.doi.org/10.1007/s00248-021-01821-9.
    10.1007/s00248-021-01821-9
  28. Michael Sweet; Helena Villela; Tina Keller-Costa; Rodrigo Costa; Stefano Romano; David G. Bourne; Anny Cárdenas; et al. "Insights into the Cultured Bacterial Fraction of Corals". mSystems 6 3 (2021): https://doi.org/10.1128/mSystems.01249-20.
    10.1128/mSystems.01249-20
  29. Keller-Costa, T.; Lago-Lestón, A.; Saraiva, J. P.; Toscan, R.; Silva, S. G.; Gonçalves, J.; Cox, C. J.; et al. Autor correspondente: Keller-Costa, T.. "Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals". Microbiome 9 1 (2021): http://dx.doi.org/10.1186/s40168-021-01031-y.
    Acesso aberto • 10.1186/s40168-021-01031-y
  30. Borges, Nuno; Keller-Costa, Tina; Sanches-Fernandes, Gracinda M.M.; Louvado, António; Gomes, Newton C.M.; Costa, Rodrigo. "Bacteriome Structure, Function, and Probiotics in Fish Larviculture: The Good, the Bad, and the Gaps". Annual Review of Animal Biosciences 9 1 (2021): 423-452. http://dx.doi.org/10.1146/annurev-animal-062920-113114.
    10.1146/annurev-animal-062920-113114
  31. Pascoal, Francisco; Costa, Rodrigo; Magalhães, Catarina. "The microbial rare biosphere: current concepts, methods and ecological principles". FEMS Microbiology Ecology 97 1 (2020): http://dx.doi.org/10.1093/femsec/fiaa227.
    10.1093/femsec/fiaa227
  32. Marques, Matilde; Borges, Nuno; Silva, Sandra Godinho; da Rocha, Ulisses Nunes; Lago-Lestón, Asunción; Keller-Costa, Tina; Costa, Rodrigo. "Metagenome-Assembled Genome Sequences of Three Uncultured Planktomarina sp. Strains from the Northeast Atlantic Ocean". Microbiology Resource Announcements 9 12 (2020): http://dx.doi.org/10.1128/mra.00127-20.
    10.1128/mra.00127-20
  33. Pascoal, Francisco; Magalhães, Catarina; Costa, Rodrigo. "The Link Between the Ecology of the Prokaryotic Rare Biosphere and Its Biotechnological Potential". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.00231.
    Aceite para publicação • 10.3389/fmicb.2020.00231
  34. Califano, Gianmaria; Kwantes, Michiel; Abreu, Maria Helena; Costa, Rodrigo; Wichard, Thomas. "Cultivating the Macroalgal Holobiont: Effects of Integrated Multi-Trophic Aquaculture on the Microbiome of Ulva rigida (Chlorophyta)". Frontiers in Marine Science 7 (2020): http://dx.doi.org/10.3389/fmars.2020.00052.
    Publicado • 10.3389/fmars.2020.00052
  35. Elham Karimi; Tina Keller-Costa; Beate M. Slaby; Cymon J. Cox; Ulisses N. da Rocha; Ute Hentschel; Rodrigo Costa. "Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria". Scientific Reports 9 1 (2019): https://doi.org/10.1038/s41598-019-38737-x.
    10.1038/s41598-019-38737-x
  36. Sandra G. Silva; Jochen Blom; Tina Keller-Costa; Rodrigo Costa. "Comparative genomics reveals complex natural product biosynthesis capacities and carbon metabolism across host-associated and free-living Aquimarina ( Bacteroidetes, Flavobacteriaceae ) species". Environmental Microbiology 21 11 (2019): 4002-4019. https://doi.org/10.1111/1462-2920.14747.
    Publicado • 10.1111/1462-2920.14747
  37. Eric J. N. Helfrich; Reiko Ueoka; Alon Dolev; Michael Rust; Roy A. Meoded; Agneya Bhushan; Gianmaria Califano; et al. "Automated structure prediction of trans-acyltransferase polyketide synthase products". Nature Chemical Biology (2019): https://doi.org/10.1038/s41589-019-0313-7.
    Publicado • 10.1038/s41589-019-0313-7
  38. Inês Raimundo; Sandra Godinho Silva; Rodrigo Costa; Tina Keller Costa. "Bioactive Secondary Metabolites from Octocoral-Associated Microbes—New Chances for Blue Growth". Marine Drugs (2018): http://www.mdpi.com/1660-3397/16/12/485.
    Acesso aberto • 10.3390/md16120485
  39. Cristina Díez-Vives; Ana I. S. Esteves; Rodrigo Costa; Shaun Nielsen; Torsten Thomas. "Detecting signatures of a sponge-associated lifestyle in bacterial genomes". Environmental Microbiology Reports (2018): https://doi.org/10.1111%2F1758-2229.12655.
    10.1111/1758-2229.12655
  40. Elham Karimi; Beate M Slaby; André R Soares; Jochen Blom; Ute Hentschel; Rodrigo Costa. "Metagenomic binning reveals versatile nutrient cycling and distinct adaptive features in alphaproteobacterial symbionts of marine sponges". FEMS Microbiology Ecology 94 6 (2018): https://doi.org/10.1093%2Ffemsec%2Ffiy074.
    10.1093/femsec/fiy074
  41. Gisele Nunes Rodrigues; Asunción Lago-Lestón; Rodrigo Costa; Tina Keller-Costa. "Draft Genome Sequence of Labrenzia sp. Strain EL143, a Coral-Associated Alphaproteobacterium with Versatile Symbiotic Living Capability and Strong Halogen Degradation Potential". Genome Announcements 6 10 (2018): https://doi.org/10.1128/genomeA.00132-18.
    10.1128/genomeA.00132-18
  42. Sandra Godinho Silva; Asunción Lago-Lestón; Rodrigo Costa; Tina Keller-Costa. "Draft Genome Sequence of Sphingorhabdus sp. Strain EL138, a Metabolically Versatile Alphaproteobacterium Isolated from the Gorgonian Coral Eunicella labiata". Genome Announcements 6 9 (2018): https://doi.org/10.1128/genomeA.00142-18.
    10.1128/genomeA.00142-18
  43. Costa, Rodrigo; Castanho, Sara; Califano, Gianmaria; Soares, F.; Costa, Rodrigo; Mata, L.; Pousao-Ferreira, P.; Ribeiro, L.; Gianmaria Califano. "The effect of live feeds bathed with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae.". Fish Physiology and Biochemistry 43 4 (2017): 1043-1054. http://hdl.handle.net/10400.1/13056.
    10.1007/s10695-017-0351-6.
  44. Costa, Rodrigo. "Morphogenesis of Ulva mutabilis (Chlorophyta) induced by Maribacter species (Bacteroidetes, Flavobacteriaceae).". (2017):
    10.1515/bot-2016-0083
  45. Califano, Gianmaria; Castanho, Sara; Soares, Florbela; Ribeiro, Laura; Cox, Cymon J.; Mata, Leonardo; Costa, Rodrigo. "Molecular Taxonomic Profiling of Bacterial Communities in a Gilthead Seabream (Sparus aurata) Hatchery". Frontiers in Microbiology 8 (2017): http://dx.doi.org/10.3389/fmicb.2017.00204.
    Publicado • 10.3389/fmicb.2017.00204
  46. Elham Karimi; Jorge M. S. Gonçalves; Margarida Reis; Rodrigo Costa. "Draft Genome Sequence of Microbacterium sp. Strain Alg239_V18, an Actinobacterium Retrieved from the Marine Sponge Spongia sp". Genome Announcements 5 3 (2017): https://doi.org/10.1128/genomeA.01457-16.
    10.1128/genomeA.01457-16
  47. Costa, Rodrigo. "Ecophysiological plasticity and bacteriome shift in the seagrass Halophila stipulacea along a depth gradient in the Northern Red Sea.". (2017):
    10.3389/fpls.2016.02015
  48. Elham Karimi; Miguel Ramos; Jorge M. S. Gonçalves; Joana R. Xavier; Margarida P. Reis; Rodrigo Costa. "Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium". Frontiers in Microbiology 8 (2017): https://doi.org/10.3389%2Ffmicb.2017.02499.
    10.3389/fmicb.2017.02499
  49. Costa, Rodrigo. "The sponge microbiome project". GigaScience (2017):
    10.1093/gigascience/gix077
  50. Costa, Rodrigo. "The gorgonian coral Eunicella labiata hosts a distinct prokaryotic consortium amenable to cultivation". (2017):
    doi.org/10.1093/femsec/fix143
  51. Francisco J. R. C. Coelho; Daniel F. R. Cleary; Rodrigo Costa; Marina Ferreira; Ana R. M. Polónia; Artur M. S. Silva; Mário M. Q. Simões; Vanessa Oliveira; Newton C. M. Gomes. "Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution". Molecular Ecology (2016): http://dx.doi.org/10.1111/mec.13779.
    10.1111/mec.13779
  52. Tina Keller-Costa; Rúben Silva; Asunción Lago-Lestón; Rodrigo Costa. "Genomic Insights into Aquimarina sp. Strain EL33, a Bacterial Symbiont of the Gorgonian Coral Eunicella labiata". Genome Announcements 4 4 (2016): https://doi.org/10.1128%2Fgenomea.00855-16.
    10.1128/genomea.00855-16
  53. Thomas, Torsten; Moitinho-Silva, Lucas; Lurgi, Miguel; Björk, Johannes R.; Easson, Cole; Astudillo-García, Carmen; Olson, Julie B.; et al. "Diversity, structure and convergent evolution of the global sponge microbiome". Nature Communications 7 1 (2016): http://dx.doi.org/10.1038/ncomms11870.
    Publicado • 10.1038/ncomms11870
  54. Cúcio, Catarina; Engelen, Aschwin H.; Costa, Rodrigo; Muyzer, Gerard. "Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific". Frontiers in Microbiology 7 (2016): http://dx.doi.org/10.3389/fmicb.2016.00440.
    10.3389/fmicb.2016.00440
  55. Telma Franco; Gianmaria Califano; Ana C. S. Gonçalves; Catarina Cúcio; Rodrigo Costa. "Draft Genome Sequence of Vibrio sp. Strain Evh12, a Bacterium Retrieved from the Gorgonian Coral Eunicella verrucosa". Genome Announcements 4 1 (2016): e01729-15. https://doi.org/10.1128/genomeA.01729-15.
    10.1128/genomeA.01729-15
  56. Grueneberg, Jan; Engelen, Aschwin H.; Costa, Rodrigo; Wichard, Thomas. "Macroalgal Morphogenesis Induced by Waterborne Compounds and Bacteria in Coastal Seawater". Plos One 11 1 (2016): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000367815600037&KeyUID=WOS:000367815600037.
    10.1371/journal.pone.0146307
  57. Goncalves, Ana C. S.; Franco, Telma; Califano, Gianmaria; Dowd, Scot E.; Pohnert, Georg; Costa, Rodrigo; Ana C S Gonçalves; et al. "Draft Genome Sequence of Vibrio sp. Strain Vb278, an Antagonistic Bacterium Isolated from the Marine Sponge Sarcotragus spinosulus". Genome announcements 3 3 (2015): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:26021918&KeyUID=MEDLINE:26021918.
    10.1128/genomeA.00521-15
  58. Coelho, Francisco J. R. C.; Cleary, Daniel F. R.; Rocha, Rui J. M.; Calado, Ricardo; Castanheira, Jose M.; Rocha, Silvia M.; Silva, Artur M. S.; et al. "Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities". Global Change Biology 21 5 (2015): 1871-1886. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000353220500011&KeyUID=WOS:000353220500011.
    10.1111/gcb.12801
  59. Kopf, Anna; Bicak, Mesude; Kottmann, Renzo; Schnetzer, Julia; Kostadinov, Ivaylo; Lehmann, Katja; Fernandez-Guerra, Antonio; et al. "The ocean sampling day consortium". GigaScience 4 (2015): 27-27. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:26097697&KeyUID=MEDLINE:26097697.
    10.1186/s13742-015-0066-5
  60. Califano, Gianmaria; Franco, Telma; Goncalves, Ana C. S.; Castanho, Sara; Soares, Florbela; Ribeiro, Laura; Mata, Leonardo; et al. "Draft Genome Sequence of Aliivibrio fischeri Strain 5LC, a Bacterium Retrieved from Gilthead Sea Bream (Sparus aurata) Larvae Reared in Aquaculture". Genome announcements 3 3 (2015): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:26044435&KeyUID=MEDLINE:26044435.
    10.1128/genomeA.00593-15
  61. Hardoim, Cristiane; Costa, Rodrigo. "Microbial Communities and Bioactive Compounds in Marine Sponges of the Family Irciniidae—A Review". Marine Drugs 12 10 (2014): 5089-5122. http://dx.doi.org/10.3390/md12105089.
    Publicado • 10.3390/md12105089
  62. Keller-Costa, Tina; Jousset, Alexandre; van Overbeek, Leo; van Elsas, Jan Dirk; Costa, Rodrigo. "The Freshwater Sponge Ephydatia fluviatilis Harbours Diverse Pseudomonas Species (Gammaproteobacteria, Pseudomonadales) with Broad-Spectrum Antimicrobial Activity". PLoS ONE 9 2 (2014): e88429. http://dx.doi.org/10.1371/journal.pone.0088429.
    10.1371/journal.pone.0088429
  63. Hardoim, Cristiane C. P.; Cardinale, Massimiliano; Cucio, Ana C. B.; Esteves, Ana I. S.; Berg, Gabriele; Xavier, Joana R.; Cox, Cymon J.; Costa, Rodrigo. "Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges". Frontiers in Microbiology 5 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000345747500001&KeyUID=WOS:000345747500001.
    10.3389/fmicb.2014.00611
  64. Alexandrino, Maria; Costa, Rodrigo; Canario, Adelino V. M.; Costa, Maria C.. "Clostridia Initiate Heavy Metal Bioremoval in Mixed Sulfidogenic Cultures". Environmental Science & Technology 48 6 (2014): 3378-3385. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000333776000036&KeyUID=WOS:000333776000036.
    10.1021/es4052044
  65. Hardoim, Cristiane C. P.; Costa, Rodrigo. "Temporal dynamics of prokaryotic communities in the marine sponge Sarcotragus spinosulus". Molecular Ecology 23 12 (2014): 3097-3112. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000337610600016&KeyUID=WOS:000337610600016.
    10.1111/mec.12789
  66. Costa, R.; Keller-Costa, T.; Gomes, N.C.M.; da Rocha, U.N.; van Overbeek, L.; van Elsas, J.D.. "Evidence for Selective Bacterial Community Structuring in the Freshwater Sponge Ephydatia fluviatilis". Microbial Ecology 65 1 (2013): 232-244. http://www.scopus.com/inward/record.url?eid=2-s2.0-84872340581&partnerID=MN8TOARS.
    10.1007/s00248-012-0102-2
  67. Coelho, F.J.R.C.; Rocha, R.J.M.; Pires, A.C.C.; Ladeiro, B.; Castanheira, J.M.; Costa, R.; Almeida, A.; et al. "Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities". Global Change Biology 19 8 (2013): 2584-2595. http://www.scopus.com/inward/record.url?eid=2-s2.0-84880132597&partnerID=MN8TOARS.
    10.1111/gcb.12227
  68. Hardoim, C.C.P.; Cox, C.J.; Peixoto, R.S.; Rosado, A.S.; Costa, R.; van Elsas, J.D.. "Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva". Brazilian Journal of Microbiology 44 1 (2013): 329-334. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879150283&partnerID=MN8TOARS.
    10.1590/S1517-83822013000100048
  69. Silva, Y.J.; Manco, S.; Costa, R.; Rodrigues, V.; Dias, J.; Ferreira, H.; Pousão-Ferreira, P.; et al. "Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata (Linnaeus, 1758)". Aquaculture Research (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84889044428&partnerID=MN8TOARS.
    10.1111/are.12336
  70. Esteves, A.I.S.; Hardoim, C.C.P.; Xavier, J.R.; Gonçalves, J.M.S.; Costa, R.. "Molecular richness and biotechnological potential of bacteria cultured from Irciniidae sponges in the north-east Atlantic". FEMS Microbiology Ecology 85 3 (2013): 519-536. http://www.scopus.com/inward/record.url?eid=2-s2.0-84881556290&partnerID=MN8TOARS.
    10.1111/1574-6941.12140
  71. Hardoim, C.C.P.; Esteves, A.I.S.; Pires, F.R.; Gonçalves, J.M.S.; Cox, C.J.; Xavier, J.R.; Costa, R.. "Phylogenetically and Spatially Close Marine Sponges Harbour Divergent Bacterial Communities". PLoS ONE 7 12 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84871657844&partnerID=MN8TOARS.
    10.1371/journal.pone.0053029
  72. Gomes NC; Cleary DF; Calado R; Costa R. "Mangrove bacterial richness.". (2011): http://europepmc.org/abstract/med/21966560.
    10.4161/cib.4.4.15253
  73. Van Elsas, J.D.; Semenov, A.V.; Costa, R.; Trevors, J.T.. "Survival of Escherichia coli in the environment: Fundamental and public health aspects". ISME Journal 5 2 (2011): 173-183. http://www.scopus.com/inward/record.url?eid=2-s2.0-78149408759&partnerID=MN8TOARS.
    10.1038/ismej.2010.80
  74. Alexandrino, M.; Macías, F.; Costa, R.; Gomes, N.C.M.; Canário, A.V.M.; Costa, M.C.. "A bacterial consortium isolated from an Icelandic fumarole displays exceptionally high levels of sulfate reduction and metals resistance". Journal of Hazardous Materials 187 1-3 (2011): 362-370. http://www.scopus.com/inward/record.url?eid=2-s2.0-79951853200&partnerID=MN8TOARS.
    10.1016/j.jhazmat.2011.01.035
  75. Dini-Andreote, F.; Andreote, F.D.; Costa, R.; Taketani, R.G.; van Elsas, J.D.; Araújo, W.L.. "Bacterial soil community in a Brazilian sugarcane field". Plant and Soil 336 1 (2010): 337-349. http://www.scopus.com/inward/record.url?eid=2-s2.0-78049275323&partnerID=MN8TOARS.
    10.1007/s11104-010-0486-z
  76. Gomes, N.C.; Flocco, C.G.; Costa, R.; Junca, H.; Vilchez, R.; Pieper, D.H.; Krögerrecklenfort, E.; et al. "Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia". FEMS Microbiology Ecology 74 2 (2010): 276-290. http://www.scopus.com/inward/record.url?eid=2-s2.0-78649383108&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2010.00962.x
  77. Costa, R.; Van Aarle, I.M.; Mendes, R.; Van Elsas, J.D.. "Genomics of pyrrolnitrin biosynthetic loci: Evidence for conservation and whole-operon mobility within Gram-negative bacteria". Environmental Microbiology 11 1 (2009): 159-175. http://www.scopus.com/inward/record.url?eid=2-s2.0-58149242718&partnerID=MN8TOARS.
    10.1111/j.1462-2920.2008.01750.x
  78. Hardoim, C.C.P.; Costa, R.; V.araújo, F.; Hajdu, E.; Peixoto, R.; Lins, U.; Rosado, A.S.; Van, J.D.E.. "Diversity of bacteria in the marine sponge aplysina fulva in brazilian coastal waters". Applied and Environmental Microbiology 75 10 (2009): 3331-3343. http://www.scopus.com/inward/record.url?eid=2-s2.0-66249094562&partnerID=MN8TOARS.
    10.1128/AEM.02101-08
  79. van Elsas, J.D.; Costa, R.; Jansson, J.; Sjöling, S.; Bailey, M.; Nalin, R.; Vogel, T.M.; van Overbeek, L.. "The metagenomics of disease-suppressive soils - experiences from the METACONTROL project". Trends in Biotechnology 26 11 (2008): 591-601. http://www.scopus.com/inward/record.url?eid=2-s2.0-53949095625&partnerID=MN8TOARS.
    10.1016/j.tibtech.2008.07.004
  80. Costa, R.; Gomes, N.C.M.; Krögerrecklenfort, E.; Opelt, K.; Berg, G.; Smalla, K.. "Pseudomonas community structure and antagonistic potential in the rhizosphere: Insights gained by combining phylogenetic and functional gene-based analyses". Environmental Microbiology 9 9 (2007): 2260-2273. http://www.scopus.com/inward/record.url?eid=2-s2.0-34547686154&partnerID=MN8TOARS.
    10.1111/j.1462-2920.2007.01340.x
  81. Adesina, M.F.; Lembke, A.; Costa, R.; Speksnijder, A.; Smalla, K.. "Screening of bacterial isolates from various European soils for in vitro antagonistic activity towards Rhizoctonia solani and Fusarium oxysporum: Site-dependent composition and diversity revealed". Soil Biology and Biochemistry 39 11 (2007): 2818-2828. http://www.scopus.com/inward/record.url?eid=2-s2.0-34547730211&partnerID=MN8TOARS.
    10.1016/j.soilbio.2007.06.004
  82. Costa, R.; Götz, M.; Mrotzek, N.; Lottmann, J.; Berg, G.; Smalla, K.. "Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds". FEMS Microbiology Ecology 56 2 (2006): 236-249. http://www.scopus.com/inward/record.url?eid=2-s2.0-33645977196&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2005.00026.x
  83. Götz, M.; Gomes, N.C.M.; Dratwinski, A.; Costa, R.; Berg, G.; Peixoto, R.; Mendonça-Hagler, L.; Smalla, K.. "Survival of gfp-tagged antagonistic bacteria in the rhizosphere of tomato plants and their effects on the indigenous bacterial community". FEMS Microbiology Ecology 56 2 (2006): 207-218. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646014149&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2006.00093.x
  84. Berg, G.; Opelt, K.; Zachow, C.; Lottmann, J.; Götz, M.; Costa, R.; Smalla, K.. "The rhizosphere effect on bacteria antagonistic towards the pathogenic fungus Verticillium differs depending on plant species and site". FEMS Microbiology Ecology 56 2 (2006): 250-261. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646003568&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2005.00025.x
  85. Costa, R.; Salles, J.F.; Berg, G.; Smalla, K.. "Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants". Environmental Microbiology 8 12 (2006): 2136-2149. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750919098&partnerID=MN8TOARS.
    10.1111/j.1462-2920.2006.01096.x
  86. Costa, R.; Gomes, N.C.M.; Peixoto, R.S.; Rumjanek, N.; Berg, G.; Mendonça-Hagler, L.C.S.; Smalla, K.. "Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm". Soil Biology and Biochemistry 38 8 (2006): 2434-2447. http://www.scopus.com/inward/record.url?eid=2-s2.0-33746863682&partnerID=MN8TOARS.
    10.1016/j.soilbio.2006.03.003
  87. Meier, J.; Costa, R.; Smalla, K.; Boehrer, B.; Wendt-Potthoff, K.. "Temperature dependence of Fe(III) and sulfate reduction rates and its effect on growth and composition of bacterial enrichments from an acidic pit lake neutralization experiment". Geobiology 3 4 (2005): 261-274. http://www.scopus.com/inward/record.url?eid=2-s2.0-33644826898&partnerID=MN8TOARS.
    10.1111/j.1472-4669.2006.00065.x
  88. Berg, G.; Zachow, C.; Lottmann, J.; Götz, M.; Costa, R.; Smalla, K.. "Impact of plant species and site on rhizosphere-associated fungi antagonistic to Verticillium dahliae Kleb.". Applied and Environmental Microbiology 71 8 (2005): 4203-4213. http://www.scopus.com/inward/record.url?eid=2-s2.0-23744446235&partnerID=MN8TOARS.
    10.1128/AEM.71.8.4203-4213.2005
  89. Costa, R.; Gomes, N.C.M.; Milling, A.; Smalla, K.. "An optimized protocol for simultaneous extraction of DNA and RNA from soils". Brazilian Journal of Microbiology 35 3 (2004): 230-234. http://www.scopus.com/inward/record.url?eid=2-s2.0-19944409539&partnerID=MN8TOARS.
    Publicado
  90. Marcial Gomes, N.C.; Fagbola, O.; Costa, R.; Gouvea Rumjanek, N.; Buchner, A.; Mendona-Hagler, L.; Smalla, K.. "Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics". Applied and Environmental Microbiology 69 7 (2003): 3758-3766. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038493638&partnerID=MN8TOARS.
    10.1128/AEM.69.7.3758-3766.2003
  91. Gomes, N.C.M.; Heuer, H.; Schönfeld, J.; Costa, R.; Mendonça-Hagler, L.; Smalla, K.. "Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis". Plant and Soil 232 1-2 (2001): 167-180. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034948012&partnerID=MN8TOARS.
    10.1023/A:1010350406708
Artigo em revista (magazine)
  1. Costa, Rodrigo. "Esponjas marinhas: do mar à farmácia", Boletim de Biotecnologia, 2014, http://www.forumoceano.pt/files/6_Comunicacao/61_artigos/Boletim_SPBT_julh2014.pdf?d=37fr.
Capítulo de livro
  1. Couceiro, J.F.; Costa, R., Keller-Costa, T.. "Beyond restoration: coral microbiome biotechnology". In Coral Reef Microbiome. Springer, 2024.
    Aceite para publicação
  2. Couceiro, Joana; Costa, Rodrigo; Keller-Costa, Tina. Autor correspondente: Keller-Costa, Tina. "Chapter 16. Beyond restoration: Coral Microbiome Biotechnology". In Coral Reef Microbiome, editado por Peixoto, Raquel; Voolstra, Christian. Springer, 2024.
    Em revisão
  3. Costa, R., Kimes, N.E., Nunes da Rocha, U., López-Pérez, M., Esteves, A.I.S., Mizuno, C.M.. "Marine Microbial Diversity". In Molecular Diversity of Environmental Prokaryotes, 57-85. CRC Press, 2016.
    Publicado • 10.1201/9781315381909-4
  4. Gomes, Newton C. M.; Costa, Rodrigo; Smalia, Kornelia. "Section 1 update: Rapid simultaneous extraction of DNA and RNA from bulk and rhizophere soil". In Molecular Microbial Ecology Manual, 2061-2071. Springer Netherlands, 2008.
    10.1007/978-1-4020-2177-0_112
  5. Van Elsas, J.D.; Costa, R.. "Molecular assessment of soil microbial communities with potential for plant disease suppression". In Biotechnology and Plant Disease Management, 498-517. 2007.
    Publicado
  6. Oros-Sichler M.; Costa, Rodrigo; Heuer, H.; Smalla, K.. "Molecular fingerprinting techniques of microbial communities". In Book Chapter. Oros-Sichler, M., Costa, R. §, Heuer, H. & Smalla, K. Molecular fingerprinting techniques of microbial communities. In: Modern Soil Microbiology II (J.D. van Elsas, J.T. Trevors and J.K. Jansson Eds.), CRC Press, Boca Raton USA (2007). Boca Raton, Estados Unidos, 2007.
    Publicado
  7. Gomes, Newton; Costa, Rodrigo; Smalla, Kornelia. "Rapid simultaneous extraction of DNA and RNA from bulk and rhizosphere soil". In Molecular Microbial Ecology Manual, 159-170. Países Baixos: Kluwer Academic Publishers, 2004.
    Publicado
Poster em conferência
  1. Costa, R.. "The list below in non-exhaustive. Please find the full list of communications in scientific conferences at https://drive.google.com/file/d/1phpycFhuNGNBslQXL50EjJfzYWayDVvf/view?usp=sharing". 2024.
  2. Fernandes, Ana M.; Couceiro, Joana F.; Keller-Costa, Tina; Costa, Rodrigo. "Exploring the potential of co-cultures to enhance secondary metabolites production in the marine bacterium Aquimarina sp. Aq135". Trabalho apresentado em MICROBIOTEC'23 - Congress of Microbiology and Biotechnology, 2023.
  3. Pascoal, Francisco; Costa, Rodrigo; Branco, Paula; Torgo, Luis; Assmy, Philipp; Magalhães, Catarina. "Construction of a long-term dataset of prokaryotic diversity from two transects of the MOSJ program". Trabalho apresentado em XV Conferência Portuguesa de Ciências Polares, 2023.
  4. Pascoal, Francisco; Branco, Paula; Costa, Rodrigo; Magalhães, Catarina. "Unsupervised learning based definition of the microbial rare biosphere". Trabalho apresentado em BTC - Blue Think Conference, 2023.
  5. Couceiro, Joana F.; Costa, Rodrigo; Keller-Costa, Tina. "Pharmaceutical and Biotechnological Applications of the Coral Microbiome". Trabalho apresentado em MIT Portugal Annual Conference, 2023.
  6. Pascoal, Francisco; Costa, Rodrigo; Torgo, Luis; Duarte, Pedro; Assmy, Philipp; Magalhães, Catarina. "Full-length 16S rRNA gene sequencing combined with GTDB database improved the description of microbial communities from marine polar environments". Trabalho apresentado em BAGECO - Bacterial Genomics and Ecology, 2023.
  7. Marques, Matilde; Santos, Elsa; Baylina, Núria; Raquel Peixoto; Keller-Costa, Tina; Costa, Rodrigo. "Insights into the culturable bacterial community of long-term aquarium tropical octocorals". Trabalho apresentado em Bacterial Genetics and Ecology, 2023.
  8. Almeida, João F.*; Costa, Rodrigo; Keller-Costa, Tina. "From chitin degradation to antibiotics production: leveraging the marine bacterial genus Aquimarina for the blue circular economy". Trabalho apresentado em SymbNET Metabolomics Workshop for Biologists: Metabolite-data driven stories on Host-Microbe Symbioses 2023, Lausanne, Switzerland, 2023.
  9. Couceiro, Joana F.; Costa, Rodrigo; Keller-Costa, Tina. "Sustainable Production of Bioactive Metabolites from Octocoral Symbionts". Trabalho apresentado em SymbNET Metabolomics Workshop for Biologists, 2023.
  10. Silva, Sandra G.* ; Keller-Costa, Tina; Costa, Rodrigo. "Genome-wide and phenotypic assays reveal versatile secondary metabolite biosynthesis capacities and antimicrobial activities by Aquimarina species. Poster Prize Winner - First author Sandra Silva was my PhD student.". Trabalho apresentado em 2nd iBB workshop 2022, Lisbon, Portugal, 2022.
  11. Couceiro, Joana F.*; Keller-Costa, Tina; Costa, Rodrigo. "Aquimarina aquimarinae sp. nov. and Aquimarina spinosulus sp. nov., new bacterial species with versatile natural product biosynthesis potential isolated from marine sponges. Short-listed for Poster Award - First author Joana Couceiro is my PhD student.". Trabalho apresentado em MIT Portugal 2022 Annual Conference, Aveiro, Portugal, 2022.
  12. Couceiro, Joana F.; Marques, Matilde; Silva, Sandra G.; Keller-Costa, Tina; Costa, Rodrigo. "Aquimarina aquimarinae sp. nov. and Aquimarina spinosulus sp. nov., new bacterial species with versatile natural product biosynthesis potential". Trabalho apresentado em MIT Portugal Annual Conference, 2022.
  13. Meunier, Laurence*; Costa, Rodrigo; Keller-Costa, Tina; George, Isabelle. "Artificial selection of chitin degrading bacterial communities from natural marine habitats". Trabalho apresentado em ISME18 - International Symposium on Microbial Ecology, Lausanne, Switzerland, 2022.
  14. Roveta, Camilla; Annibaldi, Anna; Calcinai, Barbara; Coppari, M; Di Camillo, C.G; Girolametti, Federico; Puce, S.; et al. "Heavy meals for a light sponge. Mercury bioaccumulation in the sponge Chondrosia reniformis Nardo, 1847 and its prokaryotic community". Trabalho apresentado em 11th World Sponge Conference, Leiden, The Netherlands, 2022.
  15. Marques, Matilde; Keller-Costa, Tina; Lago-Lestón, Asunción; Ulisses Nunes da Rocha; Kyrpides, Nikos C.; Páez-Espino, David; Costa, Rodrigo. "Functional and comparative metagenomics of viral communities in healthy and diseased octocoral tissue and seawater". Trabalho apresentado em Microbiotec21, 2021.
  16. Almeida, João; Marques, Matilde; Oliveira, Vanessa; Egas, Conceição; Mil-Homens, Dalila; Fialho, Arsénio; Teixeira, Miguel Cacho; et al. "Marine host-associated bacteria show versatile secondary metabolite biosynthesis capacities and antimicrobial activities.". Trabalho apresentado em MicroBiotec 21, 2021.
  17. Marques, Matilde; Almeida, João; Mil-Homens, Dalila; Fialho, Arsénio; Oliveira, Vanessa; Gomes, Newton; Costa, Rodrigo; Keller-Costa, Tina. "Bioprospecting bacterial symbionts of marine animals: sponge and coralassociated Gammaproteobacteria inhibit growth of notorious human and aquaculture pathogens.". Trabalho apresentado em MicroBiotec 21, 2021.
  18. Couceiro, Joana F.; Keller-Costa, Tina; Marques, Matilde; Kyrpides, Nikos C.; Woyke, Tanja; Whitman, William B.; Costa, Rodrigo. "The Roseibium album (Labrenzia alba) pangenome reveals multiple symbiosis factors likely underpinning host-microbe relationships in the marine benthos". Trabalho apresentado em MICROBIOTEC'21 - Congress of Microbiology and Biotechnology, 2021.
  19. Marques, Matilde; Keller-Costa, Tina; Raquel Peixoto; Costa, Rodrigo. "Microbiome therapy for improved octocoral health and reef resilience". Trabalho apresentado em MIT Portugal Annual Conference, 2021.
  20. Pascoal, Francisco; Costa, Rodrigo; Magalhãe, Catarina. "The types of prokaryotic rarity in the Arctic ocean". Trabalho apresentado em Arctic Science Summit Week, 2021.
  21. Coelho, Lígia F.; Couceiro, Joana F.; Keller-Costa, Tina; Valente, Sara; Ramalho, Tiago; Carneiro, Joana; Comte, Jerôme; et al. "Structural shifts revealed for seawater and ice microbiomes across a salinity gradient in the high Subarctic". Trabalho apresentado em World Microbe Forum, 2021.
  22. Pascoal, Francisco; Costa, Rodrigo; Magalhães, Catarina. "The prokaryotic rare biosphere is sensible to environmental heterogeinity in the Arctic ocean". Trabalho apresentado em Portuguese Polar Sciences Conference, 2020.
  23. Marques, Matilde; Silva, Sandra G.; Bernardes, Nuno; Keller-Costa, Tina; Fialho, Arsénio; Costa, Rodrigo. "Extracellular metabolites from Aquimarina (Bacteroidetes) species possess promising anticancer activity". Trabalho apresentado em Congresso de Microbiologia e Biotecnologia, 2019.
  24. Pascoal, Francisco; Magalhães, Catarina; Costa, Rodrigo. "Thinking microbial rarity". Trabalho apresentado em Halifax Mini Symposium on marine microbiology, 2019.
  25. Raimundo, Inês; Silva, Rúben; Meunier, Laurence; Keller-Costa, Tina; Costa, Rodrigo. "Chitin degradation capacity of sponge and octocoral microbiomes". Trabalho apresentado em BAGECO 15, 2019.
  26. Raimundo, Inês; Keller-Costa, Tina; Silva, Rúben; Meunier, Laurence; Costa, Rodrigo. "Multi-omics and laboratory-assisted evaluation of chitin-degrading capacities in sponge and coral microbiomes". Trabalho apresentado em ISME 17, 2018.
  27. Raimundo, Inês; Silva, Rúben; Keller-Costa, Tina; Costa, Rodrigo; Pereira, Cátia. "Multi-omics and laboratory-assisted evaluation of the chitin-degrading capacities of gorgonian coral-associated bacteria". Trabalho apresentado em Microbiotec 17, 2017.
  28. Karimi, E.; Ramos, Miguel J. N.; Franco, Telma; Rocha, U. N.; Gonçalves, J.; Reis, M. P.; Costa, Rodrigo. "Uncovering the life-style of the unculturabe: genomics and metagenomics aided cultivation of marine sponge symbionts". Trabalho apresentado em Exploiting Metagenomics Approach in Life Science Research, 2015.
Pré-impressão
  1. Michael Sweet; Helena Villela; Tina Keller-Costa; Rodrigo Costa; Stefano Romano; David Bourne; Anny Cardenas; et al. "Insights into the cultured bacterial fraction of corals". 2020. https://doi.org/10.21203/rs.3.rs-105866/v1.
    10.21203/rs.3.rs-105866/v1
  2. Karimi, Elham; Costa, Rodrigo. "Isolation and genome sequencing of 14 Spongia sp. bacterial associates expands the taxonomic and functional breadth of the cultivatable marine sponge microbiome". 2020. http://dx.doi.org/10.1101/2020.03.20.000216.
    10.1101/2020.03.20.000216
Recurso online
  1. Pascoal, F., Branco, P., Torgo, L., Costa, R., and Magalhães, C.. ulrb: Unsupervised Learning Based Definition of Microbial Rare Biosphere. Computational resource.. 2023. https://cran.r-project.org/web/packages/ulrb/index.html.
  2. Silva, S.G.; Keller-Costa, T.; Nunes da Rocha, R.; Costa, R.. Melange: A Snakemake workflow that streamlines structural and functional annotation of prokaryote genomes. Computational resource.. 2023. https://sandragodinhosilva.github.io/melange/.
  3. Keller-Costa, T., Toscan, R., Kozma, L., Silva, S.G., Gonçalves, J., Lago-Lestón, A., Kyprides, N., Nunes da Rocha, U.,. Metagenomics-resolved genomics provides insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome. Scientific outreach video.. 2022. https://www.youtube.com/watch?v=iQrVdXdYTTY.
  4. Costa, R. O microbioma marinho para um oceano saudável e uma bioeconomia sustentável. Keynote lecture at the Academy of Science of Lisbon. 2022. https://www.youtube.com/watch?v=4nFPU30uo3g.
  5. Keller-Costa, T., Lago-Lestón, A., Saraiva, J.P., Toscan, R., Silva, S.G., Gonçalves, J., Cox, C.J., Kyrpides, N., Nunes. New metagenomic insights into the octocoral microbiome. Scientific outreach video.. 2021. https://www.youtube.com/watch?v=jjuyYAluAg8.
  6. Raimundo, I., Silva, R., Meunier, L., Valente, S.M, Lago-Lestón, A., Keller-Costa, T., & Costa, R.. Uncovering the chitin degradation and utilization potential of marine microbiomes. Scientific outreach video.. 2021. https://www.youtube.com/watch?v=KrCFYL56NPI.
  7. Costa, R.. Distinct adaptive features in alphaproteobacterial symbionts of marine sponges. Keynote lecture. FEMS Microbiology Ecology Webinar on the Sponge Microbiome.. 2020. https://www.youtube.com/watch?v=YTDBIGvcz60.
Resumo em conferência
  1. Costa, R.. "The list below is non-exhaustive. Please find the full list of communications in scientific conferences at https://drive.google.com/file/d/1phpycFhuNGNBslQXL50EjJfzYWayDVvf/view?usp=sharing". 2024.
  2. Louro, Catarina; Zilhão, Henrique; Dias, Rodrigo; Gomes, Susana Sousa; Araujo, MF; Araujo, F; Araujo, M; Vieira, Gonçalo; Cesário, Rute; Costa, Rodrigo; Canário, João. "Assessing Availability and Potential Toxicity of Trace-element Contaminants in Permafrost Soils from two Antarctic Ecosystems (Deception and Livingston Islands)". Trabalho apresentado em SCAR Open Science Conference, Pucón, 2023.
    Submetido
  3. Costa, R.. "O microbioma marinho para um oceano saudável e uma bioeconomia sustentável". Trabalho apresentado em Microrganismos e Desenvolvimento Sustentável - Dia Internacional do Microrganismo, Lisbon, 2022.
  4. Pires, Francisco R.; Hardoim, Cristiane C.P.; Costa, Rodrigo; Xavier, Joana R.. "A new species of Spongia (Dictyoceratida, Spongiidae) from the Azores [poster]". Trabalho apresentado em 9th World Sponge Conference, Perth, 2013.
    Publicado
  5. Lago-Lestón M.A.; Hardoim, Cristiane C.P.; Pires, Francisco R.; Gonçalves, Jorge M.S.; Cox, Cymon J.; Xavier, Joana R.; Costa, Rodrigo. "Unravelling the structure of the marine sponge microbiome across biogeographical gradients [poster]". Trabalho apresentado em 9th World Sponge Conference, Perth, 2013.
  6. Hardoim, Cristiane C.P.; Cardinale, Massimiliano; Cúcio, Ana C. B.; Xavier, Joana R.; Cox, Cymon J.; Costa, Rodrigo. "Degrees of host specificity, effects of sample handling, and extent of cultivation bias elucidated for bacterial communities in closely related marine sponges [oral presentation]". Trabalho apresentado em 9th World Sponge Conference, Perth, 2013.
    Publicado
  7. Esteves, Ana I.S.; Hardoim, Cristiane C.P.; Xavier, Joana R.; Gonçalves, Jorge M.S.; Costa, Rodrigo. "Diversity of bacteria cultured from Irciniidae sponges [oral presentation]". Trabalho apresentado em 9th World Sponge Conference, Perth, 2013.
    Publicado
  8. Costa, Rodrigo; Hardoim, Cristiane C.P.; Esteves, Ana I.S.; Lago-Lestón M.A.; Cox, Cymon J.; Xavier, Joana R.. "Challenging the specificity of the marine sponge microbiome - a biogeographical approach". Trabalho apresentado em 9th World Sponge Conference, Perth, 2013.
    Publicado
Tese / Dissertação
  1. Hardoim, Cristiane Cassiolato Pires; Costa, Rodrigo; Cox, Cymon J.; Canario, Adelino V. M.. "Microbiome diversity and composition in the phylogenetically related marine sponges S. spinosulus and I. variabilis". Doutoramento, 2013. http://hdl.handle.net/10400.1/6738.
  2. Costa, Rodrigo. "Microbial community structure and function in the rhizosphere of crop plants: a molecular study". Doutoramento, 2006.
  3. Costa, Rodrigo. "Variabilidade e diversidade genética de comunidades bacterianas associadas à rizosfera de Milho (Zea mays L. Merril) em um agroecossistema do Rio de Janeiro". Mestrado, Universidade Federal do Rio de Janeiro, 2001.

Outros

Conjunto de dados
  1. Costa, R.. Full list of communications - Rodrigo Costa https://drive.google.com/file/d/1phpycFhuNGNBslQXL50EjJfzYWayDVvf/view?usp=sharing. 2024.
Outra produção
  1. Marine microbial diversity. Book Chapter. Costa, R., Kimes, N.E., Nunes da Rocha, U.,López-Pérez, M., Esteves, A.I.S., Mizuno, C.M. Marine microbial diversity. In: T.B. Rodrigues and A.E.T. Silva (eds.). Molecular Diversity of Environmental Prokaryotes. CRC Press, Boca Raton USA (2016).. 2016. Costa, Rodrigo; Kimes, N.E.; Nunes da Rocha, U.; Esteves, A.I.S.; Mizuno, C.M..
  2. Molecular ecology of fungal and bacterial Verticillium antagonists in/on different host plants and soils. Conference Proceedings Proceedings of the meeting “Fundamental and Practical Approaches to Increase Biocontrol Efficacy”, Spa, Belgium, 2006. International Organization for Biological Control (IOBC) Bulletin 30: 249-253 (2007).. 2007. Berg, G.; Opelt, K.; Zachow, C.; Götz, M.; Costa, Rodrigo.
Atividades

Apresentação oral de trabalho

Título da apresentação Nome do evento
Anfitrião (Local do evento)
2024 The list below is non-exhaustive. Please find the full list of oral communications, poster presentations, and dissemination activities in this file: https://drive.google.com/file/d/1phpycFhuNGNBslQXL50EjJfzYWayDVvf/view?usp=sharing Full List of Communications
2019 Functional signatures of the microbiomes of octocorals in health and disease. Microbiotec19
(Coimbra, Portugal)
2019 The microbiome of keratose marine sponges: diversity, function and biotechnology. Prokaryotic Research and Development Program Meeting, Joint Genome Institute (DOE-JGI)
Laurence Berkeley National Laboratory, UC-Berkeley, USA (Estados Unidos)
2019 The MicroEcoEvo bacterial culture collection Genomic Encyclopaedia of Bacteria and Archaea (GEBA, edition VI) kick-off meeting
Joint Genome Institute (DOE-JGI), Laurence Berkeley National Laboratory, UC-Berkeley, USA (Reino Unido)
2019 Functional signatures of the microbiomes of octocorals in health and disease Science & Technology Seminar, Joint Genome Institute (DOE-JGI)
Laurence Berkeley National Laboratory, UC-Berkeley, USA (Estados Unidos)
2018 Versatile nutrient exchange and host detoxification and chemical defence capacities in the cultivable microbial dark matter of marine sponges 17th International Symposium on Microbial Ecology
(Leipzig, Alemanha)
2018 On the road towards predicting microbial systems: Is modelling guiding the right way? Round table panelist 17th International Symposium on Microbial Ecology (ISME17)
(Alemanha)
2018 Exploring the depths of microbial diversity: Metagenomics International Microorganism Day
Instituto Superior Técnico (Portugal)
2018 Metagenomic insights into the marine sponge microbiome – Illuminating the evolution and metabolism of symbiotic Alphaproteobacteria Mini-Symposium “Networking and cooperation in Microbial Ecology”
Julius Kühn Institute (Braunschweig, Alemanha)
2018 The Microcontrol project: strategies and protocols for microbiome manipulation of fish 1st Workshop on Beneficial Microorganisms for Marine Organisms (BMMO)
UFZ-Leipzig (Alemanha)
2018 The microbiome of keratose marine sponges: diversity, function and biotechnology Encontro Ciência 2018
FCT (Lisboa, Portugal)
2018 Metagenomic insights into the marine sponge microbiome – Illuminating the evolution and metabolism of symbiotic Alphaproteobacteria iBB seminar series
Instituto Superior Técnico (Portugal)
2018 The microbiome of keratose marine sponges: diversity, function and biotechnology Elixir-Excelerate Workshop on Marine Metagenomics
Instituto Calouste Gulbenkian (Portugal)
2018 The microbiome of keratose marine sponges: diversity, function and biotechnology Seminar Series
Departamento de Oceanografia e Pescas, Universidade dos Açores (Portugal)
2017 Multi-omics and laboratory-assisted evaluation of the chitin-degrading capacities of gorgonian coral-associated bacteria Microbioec17
(Portugal)
2017 Comparative metagenomics reveals unique life strategies of the endosymbiotic consortium inhabiting the iconic bath sponge Spongia officinalis 14th Symposium on Bacterial Genetics and Ecology
(Reino Unido)
2017 Diversity, function and biotechnology of marine microbial communities - a metagenomics perspective Ciclo de Conferências redeMAR - Qual o Potencial e o Impacto da Biotecnologia Marinha nas Ciências Médicas e Farmacêuticas?
University of Lisbon (Lisboa, Portugal)
2017 Meeting the aliens: morphogenesis induction of the green alga Ulva mutabilis by bacterial symbionts of marine sponges 1st AquaRio workshop on marine microbiome diversity and manipulation
Rio de Janeiro Federal University (Brasil)
2017 Use of an oligrotrophic culture medium enables captivation of diverse alphaprobacterial lineages from the marine sponge Spongia officinalis 3rd Annual Conference of the interdisciplinary thematic network redeMAR - Ocean and Future(s)
University of Lisbon (Portugal)

Orientação

Título / Tema
Papel desempenhado
Curso (Tipo)
Instituição / Organização
2024 - Atual This list of supervisions contains completed PhD (n=6) and Master's theses (n=28) as well as ongoing PhD (n=5) and Master's (n = 6) theses. For a full list containing undergraduate monographs/projects, please consult the full CV at: https://drive.google.com/file/d/1TEj7hpMElFkqLhJSL9OEMzBqmafYvVGC/view?usp=sharing
Orientador
2023 - Atual From chitin degradation to antibiotics production: leveraging the marine bacterial genus Aquimarina for the blue circular economy
Coorientador
Biotechnology and Biosciences (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2023 - Atual Assessment of symbiosis related traits in octocoral-associated Endozoicomonas spp. using a comparative genomics-, bioassay-, and taxonomy-guided approach
Orientador
Microbiology (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2023 - Atual Culturing the unculturable: Captivating hard-to-cultivate bacterial symbionts from octocorals using host chemical cues and microaerophilic conditions.
Coorientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2023 - Atual Uncovering the macroalgae microbiome: a quest for bacterial symbionts to promote the sustainable production of algal biomass in aquaculture facilities.
Orientador
Biotechnology (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2023 - Atual Genomic analysis of Antarctic permafrost samples: assessing the impact of defrosting on the ecosystem’s toxicity
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2023 - Atual Comparative and functional genomics of octocoral symbionts
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2023 - Atual Assessing the rhizosphere e¿ect on Hg-resistant bacteria in salt marsh sediments
Orientador
Bioengineering (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/06/22 - Atual Sustainable production of bioactive metabolites from octocoral symbionts. MIT-Portugal PhD programme.
Coorientador de Joana F. Couceiro
Programa Doutoral em Biotecnologia e Biociências (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/05/01 - Atual Microbiome therapy for improved coral health and reef resilience. MIT Portugal Programme.
Orientador
Biotechnology and Biosciences (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/01/01 - Atual Deciphering the roles of the prokaryotic rare biosphere in the Arctic Ocean under climate change. PhD Programme in Biology, Faculty of Sciences, Porto University, Portugal.
Coorientador
PhD Program in Biology (Doutoramento)
Universidade do Porto Faculdade de Ciências, Portugal
2020 - Atual Chitin degradation capacities of synthetic microbial communities
Orientador
Bioengineering (Doutoramento)
Université Libre de Bruxelles, Bélgica
2020/03 - 2023/06/07 Cracking the code: exploring the virome of the marine sponge S. officinalis.
Orientador
Molecular and Microbioal Biology (Mestrado)
Universidade do Algarve, Portugal
2018/09 - 2023/06 Secondary metabolite biosynthesis by Aquimarina species: emerging properties and bioactivities from the rare marine biosphere
Orientador
Biotechnology and Biosciences (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017/09 - 2023/06 Uncovering the chitin degradation potential in the microbiomes of marine sponges and octocorals
Orientador
Biotechnology and Biosciences (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022 - 2023 GFP-tagging of Vibrio fish pathogens for studying interactions with beneficial microbiomes.
Coorientador
Biological Engineering (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2022/06 Astrobiology analyses of icy biomes as a proxy for extra-terrestrial life in icy moons
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021 - 2022 Marine bacteria associated with Phaeodactylum tricornutum and Nannochloropsis oceanica: identification, characterization and biotechnological potential
Coorientador
Master's Programme in Microbiology (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021 - 2022 Exploring planktonic microbiome diversity in the coastal ecosystems of the North of Portugal
Coorientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2022 Use of environmentally-sustainable procedures to prevent disease incidence in fish larviculture
Orientador
Biotechnology and Biosciences (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020/02 - 2021/01 Discovering the polar microbiome: structure and diversity of prokaryotic communities in ice and seawater along a salinity gradient in the Subarctic.
Orientador de Joana F. Couceiro
Masters Programme in Biological Engineering (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020/09 - 2021 Identification, phenotypic characterization and selection of Gilthead seabream (Sparus aurata) associated bacteria for Application as putative probiotics in fish larviculture
Orientador de André Magalhães
Microbiology (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020 - 2021 Captivating the uncultivated: a quest for so-far uncultured bacterial symbionts from the healthy octocoral holobiont
Coorientador
École Polytechnique Fédérale de Lausanne, Suiça
2020 - 2021 Getting to know a barley population's stomata: on how AI algorithms can improve stomatal density analysis
Coorientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2019 Assessment of antimicrobial activities of marine bacteria against human pathogens
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2019 Assessment of anticancer activities in marine sponge- and coral- associated bacteria
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2019 Tackling the diversity of the marine microbial rare biosphere: methodological challenges and ecological insights
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2019 Antimicrobial efficacy of Chlorhexidine Gluconate against Salmonella isolates from pet reptiles
Coorientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2018 Addressing the relationship between Staphylococcus aureus abundance in the human skin microbiome and atopic dermatitis: a metagenomics approach
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2018 Chitinolytic activity of bacterial symbionts from the gorgonian coral Eunicella labiata
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2018 Chitin breakdown by bacterial symbionts of marine sponges: integrating experimental and genomics approaches
Coorientador
Université Libre de Bruxelles, Bélgica
2017 - 2018 Bacterial diversity of the gorgonian coral Eunicella labiata: how much can we cultivate?
Orientador
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2017 - 2018 Deep-sea bacteria: a quest for sulfur and manganese oxidizers
Coorientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2013 - 2018 Metagenomics and functional genomics of bacterial symbionts of Spongia (Porifera, Dictyoceratida) specimens from the Algarvian shore (South Portugal)
Orientador
Universidade do Algarve, Portugal
2016 - 2017 A bioinformatic approach to the pathogenic potential of Vibrio crassostreae in marine sponges and corals
Orientador
Master's programme in Biological Engineering (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2017 Approaching the mutualistic versus pathogenic duality in symbiotic Vibrio species: a comparative genomics endeavor
Orientador
2016 - 2017 Nitrification: hunting for soil prokaryotes.
Coorientador
M.Sc. Programme in Microbiology (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 - 2016 Diversity and specificity of the marine sponge microbiome inspected by next generation sequencing
Orientador
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2014 - 2015 Worldwide diversity of sponge-associated Acidobacteria
Orientador
2013 - 2014 The potential of Asparagopsis armata to control the bacterial load associated to live feed to improve Seabream (Sparus aurata) larvae performance
Coorientador
Universidade do Algarve, Portugal
2010 - 2014 Microbiome diversity and composition in the phylogenetically related marine sponges Sarcotragus spinosulus and Ircinia variabilis
Orientador
Universidade do Algarve, Portugal
2012 - 2013 Molecular characterization of microbial communities in marine sponges and green algae: structural and functional aspects
Orientador
2011 - 2012 Molecular exploration of bacterial communities associated with azooxanthellate gorgonians in the coast of Algarve, South Portugal
Orientador
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2011 - 2012 Temperature tolerance in temperate gorgonians and their associated bacterial communities: a short-term experimental study
Orientador
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2011 - 2012 The response of sediment microeukaryotic communities to petroleum contamination and global change: a microcosm experiment
Orientador
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2010 - 2011 Fito- e bacterioplâncton em albufeiras dominadas por cianobactérias no Algarve
Coorientador
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal

Organização de evento

Nome do evento
Tipo de evento (Tipo de participação)
Instituição / Organização
2023 - 2023 Costa, R. Chair and organizer of the session Microbiomes in the Environment. 2nd Microbiome PT Summit Lisbon, Portugal (26-27.10.2023). https://biodata.pt/microbiome (2023 - 2023)
Conferência (Membro da Comissão Organizadora)
2023 - 2023 Chair and organizer of the thematic session “Biotechnology and Blue Bioeconomy – strategies for ocean conservation and health promotion. Ciência 2023, Aveiro, Portugal (July 05-07, 2023). https://www.encontrociencia.pt/2023/program/en/?dia=07#1430 (2023 - 2023)
Mesa-redonda (Presidente da Comissão Organizadora)
2023 - 2023 Promoter of the 1st Meta_Microbial Workshop¿ (in the quality of Ambassador of the International Society for Microbial Ecology - ISME in Portugal). Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), Porto, Portugal (September 12, 2023). https://isme17.isme-microbes.org/sites/default/files/meta_microbial_report_rc_MS_signed.pdf (2023 - 2023)
Oficina (workshop) (Membro da Comissão Organizadora)
2023 - 2023 Costa, R., Couceiro, J., Almeida, J. Exposition “The wonderful world of marine bacteria”. International Microorganism Day. September 16, 2023, IST, Portugal. (2023 - 2023)
Exposição (Presidente da Comissão Organizadora)
2023 - 2023 Dia do Técnico 2023 exhibitor: engagement with school children and the public, showcasing ‘The wonderful world of marine bacteria and coral reef microbiomes’ Instituto Superior Técnico, Lisbon, Portugal (19-20.05.2023) (2023 - 2023)
Exposição (Presidente da Comissão Organizadora)
2022 - 2023 Costa, R. Chair and organizer of the session Host-microbe symbioses 16th Symposium on Bacterial Genetics and Ecology, BAGECO, Copenhagen, Denmark (26-30.06.2023). https://bageco2023.org/ (2023 - 2023)
2022 - 2022 International Microorganism Day - IMD 2022, exhibitor and part of organizing committee Instituto Superior Técnico, Lisbon, Portugal http://diainternacionaldomicrorganismo.tecnico.ulisboa.pt/ (2022 - 2022)
Exposição (Coorganizador)
2020 - 2020 Promoter, in the quality of ambassador of the International Society for Microbial Ecology (ISME) in Portugal, of the Blue Think Conference – Share Science, Spread Knowledge. Porto, September 17, 2020 (2020 - 2020)
Conferência (Outra)
2020 - 2020 Chair of the session Marine Biotechnology. Blue Think Conference – Share Science, Spread Knowledge. Porto, September 17, 2020. (2020 - 2020)
Conferência (Membro da Comissão Organizadora)
2019/05/26 - 2019/05/30 Chair of the 15th Symposium on Bacterial Genetics and Ecology (BAGECO15, https://www.bageco.org/). Lisbon, May 26-30, 2019. (2019/05/26 - 2019/05/30)
Conferência (Presidente da Comissão Organizadora)
2019 - 2019 Dia National do Mar - National Day of the Sea - 2019, exhibitor at the "Museu Nacional de História Natural e da Ciência" (National Museum of Natural History and Science) in Lisbon (16.11.2019) (2019 - 2019)
Exposição (Coorganizador)
2019 - 2019 International Microorganism Day - IMD 2019, exhibitor and speaker, Instituto Superior Técnico, Lisbon, Portugal (17.09.2019) (2019 - 2019)
Exposição (Coorganizador)
2019 - 2019 Keep in Touch Event (KIT) - Dia do Técnico 2019 exhibitor; engagement with the public, showcasing „The wonderful world of marine bacteria“ Instituto Superior Técnico, Lisbon, Portugal (23.05.2019) (2019 - 2019)
Exposição (Coorganizador)
2019 - 2019 Contributor to the 17th European Union Science Olympiad (EUSO) in the formulation of tasks and experiments to be performed with marine microorganisms during EUSO2019, held in Lisbon (invitation by Prof. Arsénio Fialho, DBE-IST). http://euso.eu/ (2019 - 2019)
Exposição (Coorganizador)
2016 - 2016 Organizer of the 1st Advanced Workshop in Microbial Ecology, an event sponsored by the International Society for Microbial Ecology (ISME) under the ISME Ambassadors Programme. IST, December 2016. (2016 - 2016)
Oficina (workshop) (Presidente da Comissão Organizadora)
2016 - 2016 Creator of the theoretical-practical module marine microbial metagenomics in the framework of the 1st Advanced Technologies and Training Workshop in Marine Genomics, Centre of Marine Sciences, Faro, Portugal, 14-16 September 2016. http://att.ccmar.ualg.pt/marine_genomics_2016/ (2016 - 2016)
Oficina (workshop) (Coorganizador)
2010 - 2012 Organizer of the internal Centre of Marine Sciences -CCMAR- seminar series. Planning and scheduling of seminars in all areas within the marine sciences. Given by local researchers as well as guest and invited speakers. Once a week during four semesters (winter 2010 – summer 2012). (2010 - 2012)
Seminário (Presidente da Comissão Organizadora)

Participação em evento

Descrição da atividade
Tipo de evento
Nome do evento
Instituição / Organização
2019 - Atual Interactive presentation The wonderful world of marine/coral reef bacteria exhibited at the Instituto Superior Técnico Opens Days, once a year since 2019.
Exposição
Open Days Instituto Superior Técnico
2018 - Atual Dissemination lecture for secondary scholars: Microbiomes: what are they? And why we cannot live without them? Once a year, since 2018. Department of Bioengineering Open Days (IST-ULisbon)
Exposição
2017 - Atual Interactive presentation “The wonderful world of marine/coral reef bacteria” exhibited at the International Microorganism Day. Once a year since 2017.
Exposição
International Microorganism Day
2023 - 2023 Chair of the Session Soluções para o futuro - Jornada de Engenharia do Ambiente do Instituto Superior Técnico (JEAmbi). March 8-10, 2023. Instituto Superior Técnico, Portugal.
Encontro
2016 - 2020 Member of the Editorial Team of the internal communication letter “Newsletter DBE”, a monthly on-line publication that notifies the research community within DBE (and beyond) of the latest developments and news regarding research, teaching, and outreach performed by members of the Department of Bioengineering at IST.
Outro
Newsletter DBE
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 - 2019 Interactive presentation The wonderful world of marine/coral reef bacteria exhibited at The National Day of the Sea, 2019.
Exposição
The National Day of the Sea
2018 - 2018 Interactive presentation The wonderful world of marine/coral reef bacteria exhibited at O Mar de Alto a Baixo exposition celebrating the 20 years of the EXPO Europe event (Pavilhão do Conhecimento, Lisbon, May 2018)
Exposição
EXPO 20 Years

Júri de grau académico

Tema
Tipo de participação
Nome do candidato (Tipo de grau)
Instituição / Organização
2024 The "Jury of academic degree" activities contain only my participation as external examiner in Ph.D. and M.Sc. jurys. For an overview of my participation in jurys as supervisor, please see the list of supervisions or the full CV at https://drive.google.com/file/d/1TEj7hpMElFkqLhJSL9OEMzBqmafYvVGC/view?usp=sharing Note (Outro)
2023 Distribution and diversity of bacterial biosynthetic genes across multiple ecosystems
Arguente principal
Adriana Isabel Correia Rego (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2023 Cross-feeding as a mechanism for pathogen biocontrol
Arguente principal
Smilla Adler (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2023 Drought stress in grapevine: exploring the potential of the soil microbiome
Arguente principal
Júlio L. Maciel (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022 Antibiotic activity of bacteria associated to the marine sponges Hymeniacidon perlevis and Halichondria panicea: focus on Vagococcus fluvialis isolates
Arguente principal
Ana Rodriguez Jimenez (Doutoramento)
Université Libre de Bruxelles, Bélgica
2022 Taxonomic and functional characterization of novel microbial diversity in sponges
Arguente principal
Viet Hung Nguyen (Doutoramento)
University of New South Wales, Austrália
2021 Modelling the role of spatial structure in bacterial warfare
Arguente principal
Daniel Figueiredo de Oliveira (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021 Machine learning assisted identification of bioindicators in metagenomics – A study over transcription factor genes in a nitrate reducing microcosms
Arguente principal
Afonso O.S. Goulart (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021 Exploring the potential of microbes for modulating aquaculture bacterioplankton
Arguente principal
Joaquim M.G. de Sousa (Mestrado)
Universidade de Aveiro, Portugal
2018 Modelling Biofilm Microbial Community to Optimize Water Quality and Fish Health in a Marine Recirculating Aquaculture System
Arguente principal
Diana Bastos Serrano de Almeida (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2018 Production and screening of Nannochloropsis oceanica knockout libraries for desirable traits of industrial applications
Arguente principal
Daniel R. Figueiredo (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 SEAVENTzymes II: an integrated step-forward approach using whole-genome sequencing for the identification of industrial relevant enzymes from deep-sea vent prokaryotes
Arguente principal
Ana Sofia Eria Oliveira (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 Isolamento Endógeno de Plasmídeos e Avaliação do Potencial Biotecnológico em Bactérias Associadas a Esponjas Marinhas
Arguente principal
DANIEL BOER BONIFACIO (Mestrado)
Universidade de Aveiro, Portugal
2016 Salinity as a key selector on the activity and diversity of ammonia oxidizers in estuarine systems João Filipe Rodrigues Pereira Santos (Mestrado)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2015 Microbioma de Quercus: decifrando as comunidades microbianas da rizosfera de sobreiro e carvalho
Arguente principal
DIOGO FIGUEIREDO PINHO (Doutoramento)
Universidade de Aveiro, Portugal
2015 Characterization of the epiphytic microbial communities associated with seagrasses in a changing environment
Arguente principal
Astrid Mejia (Doutoramento)
Università degli Studi di Roma Tor Vergata, Itália
2015 Bacteriobenthos diversity in the surface of different sediment environments in the Ria Formosa lagoon
Arguente principal
ANA FLOR TORRES VIDAL (Mestrado)
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2014 The impact of urbanisation on coral reef ecosystems
Arguente principal
Ana Rita Nunes Moura Polónia Correia (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2014 Microbiologia Molecular na Aquicultura: Abusca de uma comunidade microbiana saudável
Arguente principal
LETICIA NOVAES DUARTE (Doutoramento)
Universidade de Aveiro, Portugal
2014 O papel das bactérias na doença da murchidão do pinheiro
Arguente principal
MARTA SALGUEIRO ALVES (Doutoramento)
Universidade de Aveiro, Portugal
2014 Cultivation of bacteria from marine sponges
Arguente principal
Nimra Amer (Mestrado)
University of New South Wales, Austrália
2012 Organic amendments in avocado crop: influence on soil microbiota and implications for the suppression of Rosellinia necatrix
Arguente principal
Nuria Bonilla Ruiz (Doutoramento)
2012 Descontaminação de petróleo por comunidades microbianas bênticas
Arguente principal
António Miguel de Oliveira Louvado (Doutoramento)
Universidade de Aveiro, Portugal
2012 Microbial ecology in Azores deep-seafloor hydrothermal environments
Arguente principal
Maria Teresa de Sousa Barros Cerqueira (Doutoramento)
Universidade dos Açores Faculdade de Ciências e Tecnologia, Portugal
2010 Interacções entre bactérias e hidrocarbonetos de petróleo em ambientes costeiros
Arguente principal
Francisco José Riso Da Costa Coelho (Doutoramento)
Universidade de Aveiro, Portugal
2010 Mediação microbiana na recuperação de sapais contaminados com hidrocarbonetos
Arguente principal
Vanessa Jesus de Oliveira (Doutoramento)
Universidade de Aveiro, Portugal
2009 Genetic Diversity of Structural Species, and Stability of Population and Ecossystems
Arguente principal
Sónia Isabel Rodrigues Aldeia Sanches Massa (Doutoramento)
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2009 Characterization of extreme halophilic prokaryotic consortia of a traditional solar saltern in Olhão, Algarve (Portugal)
Arguente principal
Cristina Ruzene Nespoli (Mestrado)
Universidade do Algarve, Portugal
2008 Biotic Interactions and the Sucess of Invasive Species: the Case of the Bacterial Flora of Caulerpa Taxifolia
Arguente principal
Tânia Raquel dos Santos Aires (Doutoramento)
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal

Arbitragem científica em conferência

Nome da conferência Local da conferência
2023 - Atual 16th Symposium on Bacterial Genetics and Ecology Soren Sorensen
2023 - 2023 2nd Microbiome PT Summit Ana T. Freitas
2020 - 2020 BTC - Blue Think Conference CIIMAR, Porto

Arbitragem científica em revista

Nome da revista (ISSN) Editora
2019 - Atual Scientific Reports
2014 - Atual Frontiers in Marine Science
2023 - 2023 Marine Drugs
2022 - 2023 Scientific Reports
2012 - 2013 Brazilian Journal of Microbiology

Consultoria / Parecer

Descrição da atividade Instituição / Organização
2018 - Atual Since 2018: Consultant in several R&D Projects within the national research landscape. Consultancy usually provided in guiding and analysis of experiments using next-generation metagenomic sequencing approaches
2023/04 - 2023/09 One of fifteen specialists invited by the Portuguese government to propose a package of legislative, financial, and scientific competitive measures for the development of the Blue Biotechnology Sector in Portugal. file:///E:/New%20Research/Projects/Blue%20Biotech%20Hub%20Matosinhos/Despacho%20N%C2%BA%204539_2023%20-%20Nomea%C3%A7%C3%A3o%20do%20Comite%20Tecnico.pdf Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 - 2016 Responsible for microbial identification services. Services and Technology Centre, Centre of Marine Sciences (CCMar) Centro de Ciências do Mar, Portugal
2014 - 2016 Responsible for antimicrobial activity services. Services and Technology Centre, Centre of Marine Sciences (CCMar). Centro de Ciências do Mar, Portugal

Curso / Disciplina lecionado

Disciplina Curso (Tipo) Instituição / Organização
2022 - Atual Founder, coordinator, and main teacher of the Curricular Unit Microbiomes (6 ECTS, Bachelor's programmes in Biological Engineering and Biomedical Engineering. Once a year since 2022). Bioengineering, Biomedical engineering (Licenciatura) Universidade de Lisboa Instituto Superior Técnico, Portugal
2021 - Atual Teaches theoretical lectures in the Curricular Unit Introduction to Biological Sciences (Bachelor's in Biological Engineering and in Biomedical Engineering, teaching load of approx. 1.5 ECTS, once a year since 2021) (Licenciatura) Universidade de Lisboa Instituto Superior Técnico, Portugal
2021 - Atual Teaches theoretical lectures in the Curricular Unit Introduction to Biological Sciences (Bachelor's programmes in Environmental Engineering and Physics, teaching load of approx. 2 ECTS, once a year since 2021). (Licenciatura) Universidade de Lisboa Instituto Superior Técnico, Portugal
2021 - Atual Member of the Committee for the creation of the novel, multidisciplinary course “Engineering Sciences” at Instituto Superior Técnico, to be taught entirely in English for both national and international students. Starting date: 2025/26 (Mestrado integrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2020 - Atual Founder, coordinator, and main teacher of the Curricular Unit Microbiomes (6 ECTS, Master's programmes in Microbiology, Biotechnology, Bioengineering, and Erasmus. Once a year since 2020). Microbiology, Biotechnology, Bioengineering, Medical Engineering (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2020 - Atual Founder, coordinator, and main teacher of the new Curricular Unit Microbiomes and Metagenomics (6 ECTS, Ph.D. programme in Biotechnology and Biosciences, since 2020) Biotecnologia e Biociências (Doutoramento) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Atual Coordinator and main teacher of the Curricular Unit Fundamentals of Ecology (6 ECTS, once a year since 2016). Engenharia do Ambiente (Licenciatura) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Atual Teaches lab practicals in the Curricular Unit Microbiology. Bioengenharia (Doutoramento) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2022 Taught theory and practicals in the Curricular Unit Functional and Comparative Genomics. (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2022 Taught theory in the Curricular Unit Comparative Genomics and Bioinformatics. (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2018 Taught lab practicals in the Curricular Units Molecular Biotechnology and Genetic Engineering. (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2018 Taught lab practicals in the Curricular Unit Molecular Biology and Biochemistry. (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal

Expedição científica

Descrição da atividade Instituição / Organização
2015 - 2015 Coordinator of the “MyOSD citizen” initiative (MyOSD, https://www.microb3.eu/myosd). In collaboration with the “Centro de Ciência Viva” of the Algarve, this activity enabled the public to collect seawater samples for microbial metagenome analysis during OSD 2015.
2014 - 2014 Sampling site coordinator for the “Faro Island” and “Ria Formosa lagoon” sites in the framework of the global network initiative Ocean Sapling Day (OSD, https://www.microb3.eu/osd) within the EU 7FP-funded project MicroB3 (https://www.microb3.eu/home).

Membro de associação

Nome da associação Tipo de participação
2015 - Atual Ambassador of the International Society for Microbial Ecology (ISME) in Portugal (since 2015 - https://www.isme-microbes.org/ambassadors). Senior Ambassador
2015 - Atual American Society for Microbiology (ASM) Associated Member
2011 - Atual Portuguese Society for Microbiology, Federation of European Microbiological Societies (FEMS) Associated Member
2009 - Atual International Society for Microbial Ecology (ISME) Ambassador of the society in Portugal since 2015

Membro de comissão

Descrição da atividade
Tipo de participação
Instituição / Organização
2019 - Atual Invited Member of the Editorial Board of Scientific Reports (since 2019).

Outro júri / avaliação

Descrição da atividade Instituição / Organização
2023 - Atual Since 2023: Evaluator of scientific research proposals submitted to DFG (Deutsche Forschungsgemeinschaft) and to FCT (Portuguese Foundation for Science and Technology)
2017 - Atual Since 2017: Evaluator of individual PhD and post-doctoral research grant proposals submitted to “Agência Regional para o Desenvolvimento da Investigação, Tecnologia e Inovação” (ARDITI, Madeira, Portugal).
2015 - Atual Since 2015 (yearly): Evaluator of R&D Proposals submitted to the programme “Pro-Polar” fostered by Fundação para a Ciência e a Tecnologia (FCT), Portugal.
2014 - 2018 From 2014 to 2018 (yearly): Evaluator of proposals submitted to the marine research network programmes ASSEMBLE (www.assemblemarine.org) and EUROMARINE (http://www.euromarinenetwork.eu/call2015/).

Tutoria

Tópico Nome do aluno
2018 - Atual Tutor of 15 undergrad students enrolled in the integrated master’s programme in Bioengineering (Once in every two years). 15 students every two years
Distinções

Prémio

2023 Excellent Teacher, Curricular Unit Microbiomes, Class of 2022/23
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022 Excellent Faculty member at IST-ULisbon (2022).
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022 Excellent Teacher, Curricular Unit Fundamentals of Ecology, Class of 2021/2022
2021 Excellent Teacher, Fundamentals of Ecology Class of 2020/21
2021 Excellent Teacher, Curricular Unit Microbiology, Class of 2020/21
2021 Excellent Teacher, Curricular Unit Molecular Biology and Biochemistry, Class of 2020/21_1Sem
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021 Excellent Teacher, Curricular Unit Molecular Biology and Biochemistry, Class of 2020/21_2sem
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020 Excellent Teacher, Curricular Unit Microbiomes, Class of 2019/20
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 Excellent Teacher, Fundamentals of Ecology Class of 2018/19
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 Excellent Faculty member at IST-ULisbon (2019).
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 Ambassador of the International Society for Microbial Ecology (ISME) in Portugal (since 2015 - https://www.isme-microbes.org/ambassadors).
2015 Independent Research Scientist Contract under the FCT Investigator Programme, Portugal (2015)
Fundação para a Ciência e a Tecnologia, Portugal
2008 Independent Research Scientist Contract under the FCT Ciência 2007 Programme, Portugal (2008-2013)
Fundação para a Ciência e a Tecnologia, Portugal
2006 Magna cum laude mentioning on Ph.D. Diploma. Technical University of Braunschweig, Germany (2006)
Technische Universität Braunschweig, Alemanha
2001 Excellent grade on M.Sc. studies. Federal University of Rio de Janeiro, Brazil (2001)
Universidade Federal do Rio de Janeiro, Brasil
1998 Cum laude mentioning on B.Sc. Diploma (grade: 8.4 in 10). Federal University of Rio de Janeiro, Brazil (1998)
Universidade Federal do Rio de Janeiro, Brasil

Outra distinção

2023 Invited by the Portuguese Government to join a panel of fifteen specialists to propose a package of legislative, financial and scientific competitive measures for the development of the Blue Biotechnology Sector in Portugal
2023 Coordinator of the large-scale Recovery and Resilience Plan Agenda Blue Bioeconomy Pact at IST-UL (Global funding: 133 MEu, 83 partners. Promoter: INOVAMAR, S.A. Funding at IST-UL: 1.5 MEu). Member of the Executive Direction of the Agenda (2023-2025).
2023 Guest Editor. Special Issue Reef Ecology and Marine Drug Discovery. Journal: Marine Drugs. https://www.mdpi.com/journal/marinedrugs/special_issues/coral_reef_ecology
2023 Guest Editor. Collection Aquaculture. Journal: Scientific Reports. https://www.nature.com/collections/hjfiidffbe
2023 Article "Harnessing the microbiome to prevent global biodiversity loss" selected by Nature Portfolio for a collection of top-articles addressing UN Sustainable Development Goals. https://www.nature.com/collections/bhfffjiadc
2019 Chair of the 15th Symposium on Bacterial Genetics and Ecology (BAGECO15, https://www.bageco.org/). Lisbon, May 26-30, 2019.
2019 Invited affiliate (Research Scientist) of the Lawrence Berkeley National Laboratory (LBNL), Department of Energy of the USA, Joint Genome Institute (DOE-JGI), Berkeley, USA (2019-2012).
2019 Invited Member of the Editorial Board of Scientific Reports (since 2019).
2013 Research Article Highlight (Editor Choice) in FEMS Microbiology Ecology, September 2013 Issue, for Molecular richness and biotechnological potential of bacteria cultured from Irciniidae sponges in the Northeast Atlantic (corresponding author).
2009 Supervisor of the PhD Grant proposal by Cristiane C.P. Hardoim, ranked #1 nationwide by the Biological Sciences evaluation panel of FCT