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Teresa Nogueira obtained the Licenciatura (BSc of 5 years) in Biology in 1993 from the Universidade de Lisboa Faculdade de Ciências and the PhD in Physiology and Genetics of Microorganisms in 2001 from the Université de Paris-Sud, France. She has postgraduate training in genomics and bioinformatics at the Sorbonne Université, France and the University of Minho, Portugal. She is a researcher at INIAV - National Institute for Agrarian and Veterinary Research and cE3c - Centre for Ecology, Evolution and Environmental Change of the University of Lisbon & CHANGE - Institute for Global Change and Sustainability. She leads the Microbial Genomics and Bioinformatics group. She works in the fields of microbiology, evolutionary biology, bacterial genomics, metagenomics, bioinformatics and agricultural sciences. Her scientific goal is to understand the evolutionary dynamics of bacterial genomes and metagenomes from human, animal and environmental microbiomes. She aims to address antibiotic resistance, virulence and genomic mobility profiles of microbial communities in aquatic and food-producing environments through large-scale genomic and metagenomic analyses as part of the One Health approach. She is also involved in outreach and science communication activities to promote scientific literacy in biological evolution. In this context, she is a board member of the scientific association EvoKE (Evolutionary Knowledge for Everybody), which is deeply involved in promoting public understanding and acceptance of evolution.
Identification

Personal identification

Full name
Teresa Isabel Vitorino Nogueira

Citation names

  • Nogueira, Teresa

Author identifiers

Ciência ID
F211-4E18-2C69
ORCID iD
0000-0002-0059-5177
Google Scholar ID
XQdy5zIAAAAJ
Researcher Id
G-2273-2010
Scopus Author Id
7004351448

Email addresses

  • teresa.nogueira@iniav.pt (Professional)
  • tnogueira@fc.ul.pt (Professional)

Addresses

  • INIAV, Av. da República, Quinta do Marquês, 2780 -157, oeiras, Oeiras, Portugal (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Microbiology
  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Natural sciences - Biological Sciences - Molecular Biology
  • Agrarian Sciences - Agriculture, Forestry and Fisheries

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Intermediate (B1) Advanced (C1) Intermediate (B1) Intermediate (B1)
French Intermediate (B1) Advanced (C1) Intermediate (B1) Intermediate (B1)
Education
Degree Classification
2024/02/27 - 2024/03/26
Concluded
Ética na Investigação Científica (Outros)
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal
2024/02/06 - 2024/02/09
Attended
OLISSIPO Winter School | Mathematical modelling of inter-cell and communities’ interactions with a focus on metabolism (Outros)
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
2023/06/05 - 2023/06/26
Concluded
Introduction to Machine Learning with Python (Postgraduate Certificate)
Swiss Institute of Bioinformatics, Switzerland
2022/11/17 - 2023/05/12
Concluded
Formation Introduction au Deep Learning (Postgraduate Certificate)
Université Grenoble Alpes, France

Centre National de la Recherche Scientifique, France
2022/11/14 - 2022/11/25
Concluded
Soil Ecology in Dry Ecosystems - SOILdarity Intensive Training Course (Outros)
Universidade de Lisboa Faculdade de Ciências, Portugal
2021/02/15 - 2021/02/19
Concluded
One Health European Joint Programme Continuing Professional Development module - Digital innovations for One Health practitioners (Postgraduate Certificate)
Bundesinstitut für Risikobewertung, Germany

Statens Veterinarmedicinska Anstalt, Sweden
2020/10/19 - 2020/10/23
Concluded
European Union Reference Laboratory for Antimicrobial Resistance (EURL-AR) training course (Outros)
Danmarks Tekniske Universitet, Denmark
2016 - 2016
Concluded
3GB-TEST course on NGS : Next-generation sequencing in a diagnostic setting (Outros)
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal

Leids Universitair Medisch Centrum, Netherlands
2016 - 2016
Concluded
Curso / Ação de formação 159 – O Ensino das Ciências para a Sociedade do Conhecimento (Training Course - Science Teaching for the Knowledge Society) (Outros)
Instituto Politécnico do Porto Instituto Superior de Engenharia do Porto, Portugal
2013 - 2013
Concluded
Génomique des Populations (analyse de données populationnelles) (Population genomics (analysis of population data)) (Postgraduate Certificate)
Sorbonne Université Campus Pierre et Marie Curie, France
2013 - 2013
Concluded
Integrating omic approaches to host-pathogen interactions (Postgraduate Certificate)
University of Liverpool, United Kingdom
2012 - 2012
Concluded
Host pathogen interaction (Pós-Graduação)
Universidade do Minho Instituto de Investigação em Ciências da Vida e Saúde, Portugal
2011 - 2011
Concluded
EMBL-EBI The Bioinformatics Roadshow – Porto (Pós-Graduação)
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2009 - 2010
Attended
Bioinformática (Bioinformatics) (Mestrado)
Major in Tecnologias de Informação
Universidade do Minho Escola de Engenharia, Portugal
2008 - 2008
Concluded
Unix/Linux: Informatique pour la Biologie – Elaboration de chaînes de traitement des informations biologiques (Unix / Linux: Computing for Biology - Development of biological information processing chains) (Postgraduate Certificate)
Sorbonne Université Campus Pierre et Marie Curie, France
2008 - 2008
Concluded
Algorithmique et Programmation: Notions de base pour les biologistes (Algorithms and Programming: Basics for Biologists) (Postgraduate Certificate)
Sorbonne Université Campus Pierre et Marie Curie, France
2008 - 2008
Concluded
Bases Algorithmiques et Statistiques de l’Analyse de Séquences – Aplications sur l’internet (Algorithms and Statistics Basics of Sequence Analysis - Applications on the Internet) (Postgraduate Certificate)
Sorbonne Université Campus Pierre et Marie Curie, France
2006 - 2006
Concluded
First aid course TAT (transport ambulance crew) (Outros)
Cruz Vermelha Portuguesa, Portugal
17
2005 - 2005
Concluded
Advanced Course in Tuberculosis: scientific basis for control (Pós-Graduação)
Instituto Gulbenkian de Ciência, Portugal
2003 - 2003
Concluded
Bioinformatic Course (Computational methods module) (Pós-Graduação)
Universidade de Aveiro, Portugal
2001 - 2001
Concluded
Gulbenkian Advanced Course on Functional Genomics (Pós-Graduação)
Universidade de Aveiro, Portugal

Instituto Gulbenkian de Ciência, Portugal
1996 - 2001
Concluded
Physiologie et Genetique des Microorganismes (Docteur)
Université de paris-Sud, France
"La relation entre le controle traductionnel de l'expression genetique et la degradation des ARN messagers chez les bacteries" (THESIS/DISSERTATION)
Très Honorable
1999 - 1999
Concluded
Structure and Function of Macromolecular Complexes – NATO / EMBO / FEBS International Summer School on Molecular and Cell Biology (Postgraduate Certificate)
NATO, Belgium

Federation of European Biochemical Societies, United Kingdom
1998 - 1998
Concluded
Molecular Basis of Bacterial Infection - EMBO / FEBS / UNESCO International Summer School on Molecular and Cell Biology (Postgraduate Certificate)
Federation of European Biochemical Societies, United Kingdom

United Nations Educational Scientific and Cultural Organization, France
1993 - 1993
Concluded
Intensive Course: Molecular Approaches to Genetic Analysis – Erasmus (Postgraduate Certificate)
Institut Jacques Monod, France

Université Paris Diderot, France
1993
Concluded
Biologia Vegetal e Aplicada (Plant and Aplied Biology) (Licenciatura)
Universidade de Lisboa Faculdade de Ciências, Portugal
"Study of the de novo methylation pattern of repeated sequences, due to MIP (Methylation Induced Premioticaly), in the filamentous fungus Ascobolus immersus" (THESIS/DISSERTATION)
15 valores
Affiliation

Science

Category
Host institution
Employer
2019/06/01 - Current Researcher (Research) Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Instituto Nacional de Investigação Agrária e Veterinária, Portugal
2008/09/15 - 2014 Postdoc (Research) Fundação para a Ciência e a Tecnologia, Portugal
Centro de Ecologia Evolução e Alterações Ambientais, Portugal
2013/02/15 - 2013/07/30 Visiting Researcher (Research) Atelier de Bioinformatique, France
Sorbonne Université Campus Pierre et Marie Curie, France
2008/02/01 - 2008/09/15 Visiting Researcher (Research) Institut Pasteur, France
Microbial Evolutionary Genomics Lab, France
2003/12/15 - 2004/12/15 Postdoc (Research) Centro de Genética Médica Doutor Jacinto Magalhães, Portugal
Centro Hospitalar Universitário do Porto EPE, Portugal
2004/09 - 2004/10 Visiting Researcher (Research) Ospedale Pediatrico Bambino Gesù, Italy
Ospedale Pediatrico Bambino Gesù, Italy
2001/02/01 - 2003/12/15 Postdoc (Research) Universidade de Aveiro Departamento de Biologia, Portugal
2002 - 2003 Visiting Researcher (Research) Universidade do Porto, Portugal
Universidade do Porto, Portugal
1996/09/01 - 2000/08/31 Research Trainee (Research) Institut de Biologie Physico-Chimique, France
Centre National de la Recherche Scientifique, France
(...)
1993/10/01 - 1995/04/30 Research Trainee (Research) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
1993/01/01 - 1993/06/30 Research Trainee (Research) Institut de Génétique et Microbiologie, France
Université de paris-Sud, France

Teaching in Higher Education

Category
Host institution
Employer
2021 - Current Lecturer (University Teacher) Universidade de Lisboa Faculdade de Medicina, Portugal
Universidade de Lisboa Faculdade de Medicina, Portugal
2016 - Current Lecturer (University Teacher) Universidade de Lisboa Faculdade de Ciências, Portugal
Centro de Ecologia Evolução e Alterações Ambientais, Portugal
2007/10 - 2012/11 Invited Assistant (Polytechnic Teacher) Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
2003 - 2007 Invited Adjunct Teacher (Polytechnic Teacher) Escola Superior de Enfermagem do Porto Pólo Ana Guedes, Portugal
Instituto Politécnico do Porto, Portugal
2002 - 2006 Invited Adjunct Teacher (Polytechnic Teacher) Universidade Católica Portuguesa Escola de Enfermagem, Portugal
Universidade Católica Portuguesa, Portugal
Projects

Grant

Designation Funders
2008 - 2014 Evolutionary dynamics of bacterial secretome
SFRH/BPD/41863/2007
Post-doc Fellow
Fundação para a Ciência e a Tecnologia
Concluded
1996/07 - 2000/12 Degradação do RNA mensageiro, controlo transcricional e possível relação entre iniciação da tradução e poli-adenilação em bactérias
PT/FCT/FCT/DFA/001/0158/527
PhD Student Fellow
Fundação para a Ciência e a Tecnologia
1999 - 1999 Federation of European Biochemical Societies (FEBS) Youth Travel Fund Stipend
_
Other
Federation of European Biochemical Societies
1993/10 - 1995/08 Genética e regulação do metabolismo da L-Arabinose em Bacillus subtilis
PT/FCT/JNICT/DSPP-DFACC/002/0262/2098
PBIC/C/BIO/1287/92
Scientific Initiation Fellow
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
1993/01 - 1993/06 Erasmus Programm - Genetics
_
Integration into Research Grant Fellow
Institut de Génétique et Microbiologie, France
Erasmus

Contract

Designation Funders
2022/06/01 - Current Genomic and phenotypic traits contributing to persistence of Listeria monocytogenes in food processing environment
PTDC/BAA-AGR/4194/2021
Researcher
Universidade Católica Portuguesa Centro Regional do Porto, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2018 - Current EuroScitizen COST Action - Building on scientific literacy in evolution towards scientifically responsible Europeans
Researcher
European Cooperation in Science and Technology, Belgium
European Cooperation in Science and Technology
Ongoing
2023/09 - 2027/09 BEekeeping products valorization and biomonitoring for the SAFEty of BEEs and HONEY (BeSafeBeeHoney)
Researcher
European Cooperation in Science and Technology (COST), Belize
2021/01/01 - 2025/12/31 CHANGE - Instituto para as Alterações Globais e Sustentabilidade
LA/P/0121/2020
Universidade do Algarve, Portugal

Fundação Gaspar Frutuoso, Portugal

FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal

Associação para a Inovação e Desenvolvimento da FCT, Portugal

Universidade de Lisboa Centro de Ecologia Evolução e Alterações Ambientais, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal

Centro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo, Portugal

Universidade de Évora, Portugal

Universidade Nova de Lisboa Centro de Investigação em Ambiente e Sustentabilidade, Portugal

Universidade NOVA de Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2022/11 - 2025/10 Biosecurity Enhanced Through Training Evaluation and Raising Awareness (BETTER)
Researcher
European Cooperation in Science and Technology (COST), Belize
European Cooperation in Science and Technology (COST)
Ongoing
2022/04 - 2023/06 NAMSHIELD: Control of Salmonella spp., in the poultry industry, applying nanoencapsulated aptamers of nucleic acid mimics
POCI-FEDER-069756
Ongoing
2022 - 2023 PLAYMUTATION - Virus Epidemiologic-themed Digital Games and Youngsters' Attitudes to Viral Infections
DMPI/001/2022
Researcher
Universidade de Aveiro
Ongoing
2018/10/30 - 2022/10/29 Antimicrobial Resistance Determinants in Aquaculture Environments
PTDC/BIA-MIC/28824/2017
Instituto Nacional de Investigação Agrária e Veterinária, Portugal

Instituto Português do Mar e da Atmosfera, Portugal

Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2019/01/01 - 2019/12/31 Centro de Ecologia, Evolução e Alterações Ambientais
UID/BIA/00329/2019
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Fundação Gaspar Frutuoso, Portugal

FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal

Universidade de Lisboa Centro de Ecologia Evolução e Alterações Ambientais, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal

Universidade de Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2018/10/01 - 2019/06/01 Food-producing animals as reservoirs of resistance to Critically Important Antibiotics
PTDC/CVT-CVT/28469/2017
Researcher
Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2011/01/01 - 2013/12/31 Projecto Estratégico - UI 329 - 2011-2012
PEst-OE/BIA/UI0329/2011
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2001 - 2003 Molecular and structural study of the identity of a novel ser-tRNACAG which mediates a genetic code change in Candida albicans.
Post-doc Fellow
Fundação para a Ciência e a Tecnologia, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
1993 - 1995 Genética e Regulação do Metabolismo da L-Arabinose em «Bacillus subtilis»
PBIC/C/BIO/1287/92
Research Fellow
Fundação para a Ciência e a Tecnologia, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Book
  1. Teresa Noguera; Ana Rosa Botelho; Lucas Bowler; Joao Inacio. Evolution of Animal Microbial Communities in Response to Environmental Stress. Frontiers Media SA. 2022.
    10.3389/978-2-88974-972-0
  2. Nogueira, Teresa; Ana Rita Ponce. Influenza Virus: A Challenge to the Immune System and to Medicine in the Light of Evolution. Zenodo. 2021.
  3. Margarida Duarte; Nogueira, Teresa; Ana Botelho; Sandra Cavaco; Ana Duarte; Patricia Tavares Santos; Rita Sousa; Sara Portela. Animal and Human Coronaviruses: Evolution and pathogenicity of the virus and disease prevention. Zenodo. 2021.
    Editor
  4. Margarida Duarte; Teresa Nogueira; Ana Rosa Botelho; Sandra Cavaco Gonçalves; Ana Duarte; Patricia Tavares Santos; Rita Sousa; Sara Portela. Coronavírus dos Animais e do Homem: Evolução e Patogenia dos Vírus e Prevenção de Doença. Portugal: INIAV. 2020.
    Editor
  5. Nogueira, Teresa; Ponce, Rita. Vírus da gripe: desafios do sistema imunitário e da medicina à luz da evolução. 2019.
Book chapter
  1. Dionisio, Francisco; Nogueira, Teresa. "Mundo feito de mudanças. A variação textual é apenas uma das diferenças que caracterizam a vida humana". In Descubra as diferenças. Variação na literatura portuguesa desde a Idade Média até anteontem. Lisbon: CLUL, 2023.
    Published
  2. Nogueira, Teresa. "Comunicação de Ciência em Microbiologia". Portugal: Sociedade Portuguesa de Microbiologia, 2022.
    Published
  3. Francisco Dionisio; Nogueira, Teresa; Luis Carvalho; Helena Mendes-Soares; Silvia Mendonça; Iolanda Domingues; Bernardino Moreira; Ana Reis. "What Maintains Plasmids Among Bacteria?". In Horizontal Gene Transfer in Microorganisms. Norfolk Caister Academic Press, 2012.
    Published
Conference paper
  1. Liliana Vale Costa; Frederico Proença; Ana Passos; Nelson Zagalo; Nogueira, Teresa; Margarida Duarte; Ortet, Cláudia; Ana Veloso. "Designing for viral infection awareness through PLAYMUTATION". Paper presented in Cumulus Conference Antwerp 2023, Antwerp, 2023.
    Published
  2. Sá-Pinto, Xana; Mavrikaki, Evangelia; Realdon, Giulia; Vásquez Ben, Lucía; Pessoa, Patrícia; Korfiatis, Kostas; Panayides, Andreas; et al. "EuroScitizen Working Group 2 I Identifying needs and opportunities to improve the contribution of formal education to public literacy on evolution". 2022.
Conference poster
  1. Barata, Ana; Nunes, Bárbara; Nogueira, Teresa; M. J. Saavedra; Almeida, Gonçalo. Corresponding author: Almeida, Gonçalo. "Pathogenicity and virulence of Listeria monocyotogenes isolates from dairy farms". Paper presented in Microbiotec, 2023.
  2. Daniel G. Silva; Célia P. F. Domingues; João Figueiredo; Francisco Dionisio; Ana Botelho; Nogueira, Teresa. "Metagenomic analysis of the resistome of Portuguese aquacultures and its epidemic potential". Paper presented in 2nd Microbiome PT Summit, 2023.
  3. Carina Almeida; Faria, Márcia; Nogueira, Teresa; Carvalho, Josué; Pinho, Eva. "Controlling Salmonellosis on poultry industry through the use of aptamers: Identification of protein targets". Paper presented in IAFP's European symposium, 2023.
  4. Daniel G. Silva; Celia P. F. Domingues; João F. Figueiredo; Dionisio, Francisco; Ana Botelho; Nogueira, Teresa. "Metagenomic study of bacterial resistance and its epidemic potential in estuarine farms in Portugal". Paper presented in Dare2Change, 2023.
  5. Daniel G. Silva; Célia P. F. Domingues; João Figueiredo; Francisco Dionisio; Ana Botelho; Nogueira, Teresa. "Metagenomic study of bacterial resistance and its epidemic potential in estuarine aquaculture farms in Portugal". Paper presented in Dare2Change, 2023.
  6. Daniel G. Silva; Celia P. F. Domingues; João F. Figueiredo; Dionisio, Francisco; Ana Rosa Botelho; Nogueira, Teresa. "Microbiome and resistome dynamics of Portuguese estuarine aquacultures". Paper presented in XVIII ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, 2022., 2022.
  7. Joao S. Rebelo; Celia P. F. Domingues; Monteiro, Francisca; Nogueira, Teresa; Dionisio, Francisco. "Human social interactions shape the distribution of pathogenicity and antibiotic- resistance genes". Paper presented in XVIII ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, 2022.
  8. Daniel G. Silva; Celia P. F. Domingues; Dionisio, Francisco; Ana Rosa Botelho; Nogueira, Teresa. "Estuarine Aquacultures at the Crossroads of Animal Production and Antibacterial Resistance A Metagenomic Approach to the Resistome". Paper presented in MicroSummit 2022, 2022.
  9. Daniel Silva; João Figueiredo; Celia P. F. Domingues; Dionisio, Francisco; Maulvault, Ana Luísa; Soares, Florbela; Patricia Anacleto; Ana Rosa Botelho; Nogueira, Teresa. "Antibiotic resistance determinants in estuarine aquacultures in Portugal". Paper presented in IC2AR 2022 -5th International Caparica Congress in Antibiotic Resistance, 2022.
  10. Helena Silveira; Celia P. F. Domingues; João S. Rebelo; Ana Amaro; Dionisio, Francisco; Nogueira, Teresa. "Genomic dynamics of virulence and antibiotic resistance in bacterial genomes". Paper presented in XVII ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, 2021.
  11. Nogueira, Teresa; Cristina Ferreira; Ana Rosa Botelho. "Comparative analysis of resistome and mobilome of oyster aquacultures with other aquatic environments". Paper presented in Dare2Change, 2021.
  12. João Rebelo; Célia Domingues; Francisca Monteiro; Nogueira, Teresa; Francisco Dionisio. "Plasmid transfer as a weapon against plasmid-free cells – a strategy that leads to plasmid maintenance". Paper presented in RECOMB 2021 (The 25th International Conference on Research in Computational Molecular Biology), 2021.
  13. Célia Domingues; João Rebelo; Nogueira, Teresa; Joël Pothier; Francisca Monteiro; Francisco Dionisio. "Why is there a positive correlation between the diversity of virulence and antibiotic-resistance genes?". Paper presented in RECOMB 2021 (The 25th International Conference on Research in Computational Molecular Biology), 2021.
  14. Célia Domingues; João Rebelo; Francisco Dionisio; Ana Rosa Botelho; Nogueira, Teresa. "The Social Distancing Imposed To Contain COVID-19 Can Affect Our Microbiome: a Double-Edged Sword in Human Health". Paper presented in 6th Annual Meeting 2020 Frontiers in E3, 2020.
  15. Célia Domingues; João Rebelo; Nogueira, Teresa; Joël Pothier; Francisca Monteiro; Francisco Dionisio. "Ratio between contagion probability and resistance genes loss rate is key for the emergence of a positive correlation between the diversity of virulence and antibiotic-resistance genes". Paper presented in Ciências Research Day 2020, 2020.
  16. João Rebelo; Célia Domingues; Francisca Monteiro; Nogueira, Teresa; Francisco Dionisio. "Long life of persistent cells – faults and errors resulting in a power-law decay". Paper presented in Ciências Research Day 2020, 2020.
  17. João Rebelo; Célia Domingues; Francisco Dionísio; Ana Rosa Botelho; Nogueira, Teresa. "How the measures imposed due to COVID-19 influence the human microbiome?". Paper presented in Ciências Research Day 2020, 2020.
  18. Ana Amaro; Célia Leão; Vanessa Guerra; Laura Moura; Ivone Correia; Teresa Albuquerque; Teresa Nogueira; et al. "Plasmid-mediated resistance to critically important antibiotics in Escherichia coli isolated from food-producing animals and retail meat". Paper presented in OHEJP ASM 2020, 2020.
    10.1109/rsete.2011.5966141
  19. Nogueira, Teresa; Ana Amaro; Cristina Ferreira; Sandra Cavaco; Teresa Albuquerque; Andreia Freitas; Lurdes Clemente; Ana Rosa Botelho. "Metagenomic analysis of antimicrobial resistance profiles in aquatic environments". Paper presented in OHEJP ASM 2020, 2020.
  20. Lurdes Clemente; Laura Moura; Célia Leão; Vanessa Guerra; Ivone Correia; Teresa Albuquerque; Patrícia Themudo; et al. "Diversity of plasmid-mediated resistance to critically important antibiotics in Escherichia coli isolated from meat, Portugal, 2016-2017". Paper presented in 1o Simpósio INIAV para a Segurança Alimentar Rumo à Alimentação do Futuro, 2019.
  21. Nogueira, Teresa; Ana Amaro; Cristina Ferreira; Sandra Cavaco; Teresa Albuquerque; Patricia Anacleto; Ana Malvault; et al. "Antimicrobial resistance determinants in bivalves aquaculture". Paper presented in 1o Simpósio INIAV para a Segurança Alimentar Rumo à Alimentação do Futuro, 2019.
  22. Celia Domingues; Nogueira, Teresa; Francisco Dionisio. "Virulence genes and antibiotic resistance genes in microbiomes of human populations – a network perspective". Paper presented in XV Encontro Nacional de Biologia Evolutiva, 2019.
  23. Pedro HC David; Xana Sá-Pinto; Nogueira, Teresa. "SimulATe software in the classroom: modelling the effects of antibiotic selective pressure on the dynamics of pathogenic bacterial populations". Paper presented in XV Encontro Nacional de Biologia Evolutiva, 2019.
  24. Rita Ponce; Nogueira, Teresa. "Influenza: an evolving virus. A game to play in the classroom and to learn about evolution!". Paper presented in XV Encontro Nacional de Biologia Evolutiva, 2019.
  25. Nogueira, Teresa; Ana Amaro; Cristina Ferreira; Sandra Cavaco; Teresa Albuquerque; Patricia Anacleto; Ana Malvault; et al. "In silico metagenomics comparison of antimicrobial resistance profiles in aquaculture environments". Paper presented in AquaImprove - 4th Aquaculture Research Workshop, 2019.
  26. Pedro H C David; Xana Sá-Pinto; Nogueira, Teresa. "SimulATe - A simulator of antibiotic therapy effects on the dynamics of bacterial populations". Paper presented in Frontiers in E3: cE3c 2018 Annual Meeting, 2018.
  27. Pedro Miguel Agostinho Escudeiro; Joël Pothier; Francisco Dionisio; Nogueira, Teresa. "Co-selective patterns of antibiotic resistance and virulence in environmental and human gut microbiomes". Paper presented in Bioinformatics Open Day, 2017.
  28. Rita Ponce; Rita Campos; Maria João Fonseca; Telma Laurentino; Xana Sá-Pinto; Duarte; Leonor Rodrigues; André Levy; Nogueira, Teresa. "Advancing Evolutionary Biology Education and Outreach in Portugal : the myriad of activity of NEDE". 2017.
  29. Pedro Miguel Agostinho Escudeiro; Pedro HC David; Francisco Dionisio; Joël Pothier; Nogueira, Teresa. "Metagenomic mining of pathogenicity and antibiotic resistance traits across human populations worldwide". Paper presented in XI Encontro Nacional de Biologia Evolutiva, 2015.
  30. Rita Ponce; Nogueira, Teresa. "Are bacterial antitoxins public goods?". Paper presented in IX Encontro Nacional de Biologia Evolutiva, 2013.
  31. Nogueira, Teresa; Marie Touchon. "Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria". Paper presented in EMBO workshop: Integrating omic approaches to host-pathogen interactions, 2013.
  32. Nogueira, Teresa; Eduardo Rocha. "Bacterial sociality and virulence are mainly encoded on mobile non-core regions of the genome". Paper presented in VII Encontro Nacional Biologia Evolutiva, 2011.
  33. Nogueira, Teresa; Daniel Rankin; Marie Touchon; François Taddei; Sam Brown; Eduardo Rocha. "Bacterial evolution of cooperation is driven by genome mobility". Paper presented in Keystone Symposia on Microbial Communities as Drivers of Ecosystem Complexity, 2011.
  34. Nogueira, Teresa; Daniel Rankin; Marie Touchon; François Taddei; Sam Brown; Eduardo Rocha. "Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence". Paper presented in SMBE 2010 - Annual Meeting of the Society for Molecular Biology and Evolution, 2010.
  35. Ana Catarina Gomes; Isabel Miranda; Nogueira, Teresa; Patricia Santo; Miguel Santos; Manuel Santos. "The evolutionary pathway of CUG reassignment in Candida albicans". Paper presented in Congresso Nacional de Bioquímica, 2002.
  36. Nogueira, Teresa; Manuel Santos. "The role of the Seryl-tRNA synthetase in the evolution of CUG reassignment in Candida albicans". Paper presented in I Post-graduation Symposium in Biosciences, 2002.
  37. joel caillet; Nogueira, Teresa; Monique Graffe; Pascale Romby; Bernard Ehresmann; Chantal Ehresmann; Rajan Sankaranarayanan; et al. "Mimicry between mRNA and tRNA recognition by E. coli threonyl-tRNA synthetase". Paper presented in FASEB summer research conference "Posttranscriptional control of gene expression, 2000.
  38. joel caillet; Nogueira, Teresa; Monique Graffe; Pascale Romby; Bernard Ehresmann; Chantal Ehresmann; Dock-Brégeon, A.-C.; Dino Moras; Mathias Springer. "Mimicry between mRNA and tRNA recognition by E. coli threonyl-tRNA synthetase". Paper presented in 18th tRNA Workshop, 2000.
  39. joel caillet; Nogueira, Teresa; Monique Graffe; Pascale Romby; Rajan Sankaranarayanan; Dock-Brégeon, A.-C.; Dino Moras; et al. "Le mimétisme entre activité enzymatique et contrôle de l’expression génétique: le cas de la thréonyl-ARNt synthétase d’ E. coli". Paper presented in 3ème Rencontre du Groupe SIFRARN (Structure, Intégration, Fonction et Réactivité des ARN), 2000.
  40. Nogueira, Teresa; Mathias Springer. "mRNA degradation and translational control of the E. coli thrS gene coding for the threonyl-tRNA synthetase (ThrRS)". Paper presented in EMBO / FEBS / UNESCO International Summer School in Molecular and Cell Biology, 1999.
  41. Nogueira, Teresa; Mathias Springer. "The Relationship between translational control and mRNA degradation in E. coli". Paper presented in The 1999 Molecular Genetics of Bacteria and Phages Meeting, 1999.
  42. Mathias Springer; joel caillet; Nogueira, Teresa; Dino Moras; Bernard Ehresmann; Chantal Ehresmann. "Mimicry between mRNA and tRNA recognition by E. coli threonyl-tRNA synthetase". Paper presented in 26th meeting of the Federation of European Biochemical Societies, 1999.
  43. Nogueira, Teresa; Mathias Springer. "Relationship between translational control of gene expression and mRNA degradation in Escherichia coli". Paper presented in EMBO / FEBS / UNESCO International Summer School in Molecular and Cell Biology, 1998.
  44. Nogueira, Teresa; Mathias Springer. "Relation entre le contrôle traductionnel de l’expression génétique et dégradation des ARNm chez Escherichia coli". Paper presented in 2ème Rencontre du Groupe SIFRARN (Structure, Intégration, Fonction et Réactivité des ARN), 1998.
  45. Isabel de Sá Nogueira; Nogueira, Teresa. "Structure and control of the L-arabinose (ara) operon in Bacillus subtilis". Paper presented in 8th International Conference on Bacilli, 1995.
  46. Nogueira, Teresa; Isabel de Sá Nogueira. "Cloning the entire ara operon in Bacillus subtilis". Paper presented in Vth Spanish-Portuguese Congress in Biochemistry, 1994.
Edited book
  1. Nogueira, Teresa. Genomic Analysis of Antibiotics Resistance in Pathogens. MDPI. 2023.
    10.3390/books978-3-0365-6523-1
  2. Nogueira, Teresa. Genomic Analysis of Antibiotics Resistance in Pathogens. Switzerland: MDPI. 2023.
    Published • 10.3390/books978-3-0365-6523-1 • Editor
  3. Evolution of Animal Microbial Communities in Response to Environmental Stress. Lausanne, Switzerland: Frontiers Media SA.. 2022.
    Published • Editor
  4. ANIMAL AND HUMAN CORONAVIRUSES: Evolution and pathogenicity of the virus and disease prevention. Zenodo. 2021.
    Published • Editor
Encyclopedia entry
  1. Dionisio, Francisco; Celia P. F. Domingues; João S. Rebelo; Francisca Monteiro; Nogueira, Teresa. "The Role of Commensal and other Non-Pathogenic Bacteria". In Scholarly Community Encyclopedia, 2023. https://encyclopedia.pub/entry/40892.
    Published
  2. Nogueira, Teresa; Ana Botelho. "Antimicrobial Resistance Assessment in Aquacultures". In Scholarly Community Encyclopedia. MDPI, 2021. https://encyclopedia.pub/13157.
    Published
  3. Nogueira, Teresa; Rita Ponce. "O vírus da gripe". In Wikiciências. Casa das Ciências, 2021. https://wikiciencias.casadasciencias.org/wiki/index.php/O_v%C3%ADrus_da_Gripe.
    Published
  4. Rita Ponce; Nogueira, Teresa. "A gripe". In Wikiciências. Casa das Ciências, 2021. https://wikiciencias.casadasciencias.org/wiki/index.php/A_gripe.
    Published
Journal article
  1. Nunes, Bárbara; Barata, Ana Rita; Oliveira, Ricardo; Guedes, Hugo; Almeida, Carina; da Silva, Gabriela Jorge; Nogueira, Teresa; Saavedra, Maria José; Almeida, Gonçalo. Corresponding author: Almeida, Gonçalo. "Occurrence and diversity of Listeria monocytogenes in Portuguese dairy farms". The Microbe (2024): 100063. http://dx.doi.org/10.1016/j.microb.2024.100063.
    Published • 10.1016/j.microb.2024.100063
  2. Evangelia Mavrikaki; Realdon, G.; Aivelo, Tuomas; Bakanay, C.D.; Beniermann, Anna; Blagojevic, J.; Butkeviciene, E.; et al. Corresponding author: Evangelia Mavrikaki. "Evolution in European and Israeli school curricula - A comparative analysis". International Journal of Science Education (2024): https://doi.org/10.1080/09500693.2023.2293090.
    Published
  3. Inês Azevedo; Joana Barbosa; Helena Albano; Teresa Nogueira; Paula Teixeira. "Lactic Acid Bacteria isolated from traditional and innovative alheiras as potential biocontrol agents". Food Microbiology (2023): http://dx.doi.org/10.1016/j.fm.2023.104450.
    10.1016/J.FM.2023.104450
  4. Monica Ribeiro; Claudia Maciel; Pedro Cruz; Helena Darmancier; Nogueira, Teresa; Margarida Costa; Joana Larajeira; Rui Morais; Paula Teixeira. "Exploiting Potential Probiotic Lactic Acid Bacteria Isolated from Chlorella vulgaris Photobioreactors as Promising Vitamin B12 Producers". Foods 12 (2023): 3277. https://doi.org/10.3390/foods12173277.
    Open access • Published
  5. Celia P. F. Domingues; Joao S. Rebelo; Francisco Dionisio; Nogueira, Teresa. "Multi-Drug Resistance in Bacterial Genomes—A Comprehensive Bioinformatic Analysis". International Journal of Molecular Sciences 24 14 (2023): 11438. https://doi.org/10.3390/ijms241411438.
    Open access • Published
  6. Rebelo, João S.; Domingues, Célia P. F.; Nogueira, Teresa; Dionisio, Francisco. "Plasmids Increase the Competitive Ability of Plasmid-Bearing Cells Even When Transconjugants Are Poor Donors, as Shown by Computer Simulations". Microorganisms 11 5 (2023): 1238. http://dx.doi.org/10.3390/microorganisms11051238.
    10.3390/microorganisms11051238
  7. João S. Rebelo; Celia P. F. Domingues; Nogueira, Teresa; Dionisio, Francisco. "Plasmid-bearing cells can use their plasmids as efficient weapons even if transconjugants are poor donors". Microorganisms (2023):
    Published
  8. de Lima, Joelyn; Adnadevic, Tanja; Barstad, Johan; Georgiou, Martha; Holm, Sile; Kenig, Bojan; Martinelli, Lucia; et al. "Developing non-formal learning activities focused on increasing evolutionary knowledge and scientific literacy". zenodo (2023): 1-63. https://doi.org/10.5281/zenodo.7711038.
    Published
  9. Dionisio, Francisco; Domingues, Célia P. F.; Rebelo, João S.; Monteiro, Francisca; Nogueira, Teresa. "The Impact of Non-Pathogenic Bacteria on the Spread of Virulence and Resistance Genes". International Journal of Molecular Sciences 24 3 (2023): 1967. http://dx.doi.org/10.3390/ijms24031967.
    Published • 10.3390/ijms24031967
  10. Daniel G. Silva; Célia P. F. Domingues; João F. Figueiredo; Francisco Dionisio; Ana Botelho; Teresa Nogueira. "Estuarine Aquacultures at the Crossroads of Animal Production and Antibacterial Resistance: A Metagenomic Approach to the Resistome". Biology (2022): https://doi.org/10.3390/biology11111681.
    Open access • Published • 10.3390/biology11111681
  11. Teresa Nogueira; Daniel G. Silva; Susana Lopes; Ana Botelho. "Database of Metagenomes of Sediments from Estuarine Aquaculture Farms in Portugal - AquaRAM Project Collection". Data (2022): https://doi.org/10.3390/data7110167.
    Published • 10.3390/data7110167
  12. Nogueira, Teresa. "Genomic Analysis of Antibiotics Resistance in Pathogens". Antibiotics 11 8 (2022): 1013. http://dx.doi.org/10.3390/antibiotics11081013.
    Published • 10.3390/antibiotics11081013
  13. Helena Darmancier; Celia P. F. Domingues; Joao S. Rebelo; Ana Amaro; Dionisio, Francisco; Joël Pothier; Serra, Octávio; Nogueira, Teresa. "Are Virulence and Antibiotic Resistance Genes Linked? A Comprehensive Analysis of Bacterial Chromosomes and Plasmids". Antibiotics 11 706 (2022): https://doi.org/10.3390/antibiotics11060706.
    Open access • Published
  14. Nogueira, Teresa; Ana Rosa Botelho; Lucas Bowler; João Inácio. "Editorial: Evolution of Animal Microbial Communities in Response to Environmental Stress". Frontiers in Microbiology (2022): https://doi.org/10.3389/fmicb.2022.860609.
    Open access • Published
  15. Celia P. F. Domingues; Joao S. Rebelo; Francisca Monteiro; Nogueira, Teresa; Dionisio, Francisco. "Harmful behaviour through plasmid transfer: a successful evolutionary strategy of bacteria harbouring conjugative plasmids". Philosophical Transactions B (2021): https://doi.org/10.1098/rstb.2020.0473.
  16. João S. Rebelo; Célia P. F. Domingues; Francisca Monteiro; Teresa Nogueira; Francisco Dionisio. "Bacterial persistence is essential for susceptible cell survival in indirect resistance, mainly for lower cell densities". PLOS ONE (2021): https://doi.org/10.1371/journal.pone.0246500.
    10.1371/journal.pone.0246500
  17. Nogueira, Teresa; Ana Botelho. "Metagenomics and Other Omics Approaches to Bacterial Communities and Antimicrobial Resistance Assessment in Aquacultures". Antibiotics 10 7 (2021): 787. https://doi.org/10.3390/antibiotics10070787.
    Open access
  18. João Rebelo; Celia P. F. Domingues; Francisco Dionisio; Manuel Carmo Gomes; Ana Botelho; Nogueira, Teresa. "COVID-19 lockdowns may reduce resistance genes diversity in the human microbiome and the need for antibiotics". International Journal of Molecular Sciences 22 13 (2021): 6891. https://doi.org/10.3390/ijms22136891.
    Open access
  19. Rita Ponce; Nogueira, Teresa. "A Gripe (Flu)". Revista de Ciência Elementar 9 2 (2021): 32. http://doi.org/10.24927/rce2021.032.
    Open access
  20. Nogueira, Teresa; Rita Ponce. "O Vírus da Gripe (Flu Virus)". Revista de Ciência Eementar 9 2 (2021): 38. http://doi.org/10.24927/rce2021.038.
    Open access
  21. Joana Inês Bastos Barbosa; Helena Albano; Beatriz Silva; Maria Helena Almeida; Nogueira, Teresa; Paula Teixeira. "Characterization of a Lactiplantibacillus plantarum R23 isolated from arugula by whole-genome sequencing and its bacteriocin production ability". International Journal of Environmental Research and Public Health (2021): https://doi.org/10.3390/ijerph18115515.
    Open access
  22. Celia P. F. Domingues; Joao S. Rebelo; Joël Pothier; Francisca Monteiro; Nogueira, Teresa; Francisco Dionisio. "The perfect condition for the rising of superbugs: person-to-person contact and antibiotic use are the key factors responsible for the positive correlation between antibiotic resistance gene diversity and virulence gene diversity in human metagenomes". Antibiotics (2021): https://doi.org/10.3390/antibiotics10050605.
    Open access
  23. Fabio Abade dos Santos; Sara portela; Nogueira, Teresa; Carina Carvalho; Rita Sousa; Margarida Duarte. "Harmless Or Threatening? Interpreting the Results of Molecular Diagnosis in the context of Virus-Host Relationships". Frontiers in Microbiology (2021): https://www.frontiersin.org/articles/10.3389/fmicb.2021.647730.
    Open access
  24. Joao S. Rebelo; Celia P. F. Domingues; Francisca Monteiro; Nogueira, Teresa; Francisco Dionisio. "The power of dying slowly - persistence as unintentional dormancy". PLoS ONE (2021):
    Under revision
  25. Joao S. Rebelo; Célia P. F. Domingues; Francisco Dionisio; Manuel Carmo Gomes; Ana Rosa Botelho; Nogueira, Teresa. "COVID-19 lockdowns may reduce resistance genes diversity in the human microbiome and the need for antibiotics". medRxiv (2021): https://doi.org/10.1101/2021.03.08.21253164.
  26. Sá-Pinto, Xana; Realdon, Giulia; Torkar, Gregor; Sousa, Bruno; Georgiou, Martha; Jeffries, Alex; Korfiatis, Konstantinos; et al. "Development and validation of a framework for the assessment of school curricula on the presence of evolutionary concepts (FACE)". Evolution: Education and Outreach 14 1 (2021): http://dx.doi.org/10.1186/s12052-021-00142-2.
    Open access • 10.1186/s12052-021-00142-2
  27. Joao S. Rebelo; Celia P. F. Domingues; Francisca Monteiro; Teresa Nogueira; Francisco Dionisio. "The power of dying slowly - persistence as unintentional dormancy". bioRxiv (2021): https://doi.org/10.1101/2021.01.20.427471.
    Published • 10.1101/2021.01.20.427471
  28. Alexandra Sá Pinto; Giulia Realdon; Bruno Sousa; M Giorgiou; Alex Jeffries; Kostas Korfiatis; Silvia Paolucci; et al. "Development and validation of a Framework for the Assessment of school Curricula on the presence of Evolutionary concepts (FACE)". Evolution: Education and Outreach (2021): https://doi.org/10.1186/s12052-021-00142-2.
    Published
  29. Célia P. F. Domingues; João S. Rebelo; Francisco Dionisio; Ana Botelho; Teresa Nogueira. "The Social Distancing Imposed To Contain COVID-19 Can Affect Our Microbiome: a Double-Edged Sword in Human Health". mSphere (2020): https://doi.org/10.1128/mSphere.00716-20.
    10.1128/mSphere.00716-20
  30. Célia Domingues; João Rebelo; Nogueira, Teresa; Joël Pothier; Francisca Monteiro; Francisco Dionisio. "Gene transmission and antibiotic usage are the key factors responsible for the positive correlation between antibiotic resistance gene diversity and virulence gene diversity in human metagenomes". bioRxiv (2020): https://doi.org/10.1101/2020.04.25.061853.
    Published
  31. Adnadevic, Tanja; Milosevic, Tamara; Radovcic, Davorka. "Exploratory study of evolution-themed, non-formal education in Europe". (2020): https://doi.org/10.5281/zenodo.3712725.
    10.5281/zenodo.3712725
  32. Pedro HC David; Xana Sá-Pinto; Nogueira, Teresa. "Microbiomes are Important Key Players in Human Health-Mutualistic Interactions with and between our Microbes". JOJ Internal Medicine 1 2 (2019): 555556. https://juniperpublishers.com/jojim/pdf/JOJIM.MS.ID.555556.pdf.
    Open access • Published • 10.19080/JOJIM.2019.01.555556
  33. Pedro Escudeiro; Joël Pothier; Francisco Dionisio; Teresa Nogueira. "Antibiotic Resistance Gene Diversity and Virulence Gene Diversity Are Correlated in Human Gut and Environmental Microbiomes". mSphere (2019): https://doi.org/10.1128/mSphere.00135-19.
    10.1128/mSphere.00135-19
  34. Pedro H C David; Xana Sá-Pinto; Teresa Nogueira. "Using SimulATe to model the effects of antibiotic selective pressure on the dynamics of pathogenic bacterial populations". Biology Methods and Protocols (2019): https://doi.org/10.1093/biomethods/bpz004.
    10.1093/biomethods/bpz004
  35. Teresa Nogueira; Pedro H. C. David; Joël Pothier. "Antibiotics as both friends and foes of the human gut microbiome: The microbial community approach". Drug Development Research (2018): https://doi.org/10.1002/ddr.21466.
    10.1002/ddr.21466
  36. Pedro Escudeiro; Joel Pothier; Francisco Dionisio; Teresa Nogueira. "Correlation among antibiotic resistance and virulence traits in human gut microbiomes". bioRxiv (2018): https://doi.org/10.1101/298190.
    Published • 10.1101/298190
  37. Teresa Nogueira. "A crise dos antibióticos". Revista de Ciência Elementar 5 1 (2017): 1-5. https://doi.org/10.24927%2Frce2017.013.
    10.24927/rce2017.013
  38. Nogueira, Teresa. "Interactions within human bacterial communities. Novel genomic approaches to social interactions within human bacterial communities". SPM Magazine 2 3 (2013): https://spmicrobiologia.wordpress.com/2013/12/29/interactions-within-human-bacterial-communities/.
  39. Nogueira, Teresa; Touchon, Marie; Rocha, Eduardo P. C.. "Rapid Evolution of the Sequences and Gene Repertoires of Secreted Proteins in Bacteria". PLoS ONE 7 11 (2012): e49403. http://dx.doi.org/10.1371/journal.pone.0049403.
    10.1371/journal.pone.0049403
  40. Rankin, D. J.; Ginty, S. E.; Nogueira, T.; Touchon, M.; Taddei, F.; Rocha, E. P.; Brown, S. P.. "Bacterial cooperation controlled by mobile elements: kin selection and infectivity are part of the same process.". Heredity 107 3 (2011): 279-81.
    10.1038/hdy.2011.59
  41. Nogueira, T.; Rankin, D.J.; Touchon, M.; Taddei, F.; Brown, S.P.; Rocha, E.P.C.. "Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence". Current Biology 19 20 (2009): 1683-1691. https://doi.org/10.1016/j.cub.2009.08.056.
    10.1016/j.cub.2009.08.056
  42. Vilarinho, L.; Pereira, C.; Nogueira, C.; Nogueira, T.; Santorelli, F. M.. "Novel tRNA mutations identified in a study of pediatric patients with sensorineural hearing loss". Mitochondrion (Kidlington) 5 3 (2005): 223-224.
    Published
  43. Nogueira, T; Nogueira, C; Pereira, C; Vilarinho, L; Santorelli, F. "Novel mt-tRNA mutations present in two patients with sensorineural hearing loss". Biochimica et Biophysica Acta (BBA) - Bioenergetics 1657 (2004): 92-93.
  44. Caillet, J.; Nogueira, T.; Masquida, B.; Winter, F.; Graffe, M.; Dock-Brégeon, A.-C.; Torres-Larios, A.; et al. "The modular structure of Escherichia coli threonyl-tRNA synthetase as both an enzyme and a regulator of gene expression". Molecular Microbiology 47 4 (2003): 961-974. https://doi.org/10.1046/j.1365-2958.2003.03364.x.
    10.1046/j.1365-2958.2003.03364.x
  45. Nogueira, T.; De Smit, M.; Graffe, M.; Springer, M.. "The relationship between translational control and mRNA degradation for the Escherichia coli threonyl-tRNA synthetase gene". Journal of Molecular Biology 310 4 (2001): 709-722. https://doi.org/10.1006/jmbi.2001.4796.
    10.1006/jmbi.2001.4796
  46. Nogueira, T.; Springer, M.. "Post-transcriptional control by global regulators of gene expression in bacteria". Current Opinion in Microbiology 3 2 (2000): 154-158. https://doi.org/10.1016/S1369-5274(00)00068-0.
    10.1016/S1369-5274(00)00068-0
  47. Sá-Nogueira, I.; Nogueira, T.V.; Soares, S.; De Lencastre, H.. "The Bacillus subtilis L-arabinose (ara) operon: Nucleotide sequence, genetic organization and expression". Microbiology 143 3 (1997): 957-969. https://doi.org/10.1099/00221287-143-3-957.
    10.1099/00221287-143-3-957
  48. Goyon, C.; Nogueira, T.I.V.; Faugeron, G.. "Perpetuation of cytosine methylation in ascobolus immersus implies a novel type of maintenance methylase". Journal of Molecular Biology 240 1 (1994): 42-51. https://doi.org/10.1006/jmbi.1994.1416.
    10.1006/jmbi.1994.1416
Online resource
  1. Nogueira, Teresa. Improving antimicrobial resistance surveillance in livestock production. 2023. http://dx.doi.org/10.1038/s43016-023-00835-5.
    10.1038/s43016-023-00835-5
  2. Nogueira, Teresa. Antibiotic Resistance: Present Knowledge and Future Challenges. 2023. https://www.mdpi.com/journal/microorganisms/special_issues/1F1EH362Q1.
  3. Nogueira, Teresa. Special Issue "Genomic Analysis of Antibiotics Resistance in Pathogens - Second Edition" - Antibiotics Journal (MDPI). 2022. https://www.mdpi.com/journal/antibiotics/special_issues/GYU0XG881F.
  4. Nogueira, Teresa. Special Issue "Genomic Analysis of Antibiotics Resistance in Pathogens" - Antibiotics Journal (MDPI). 2020. https://www.mdpi.com/journal/antibiotics/special_issues/Gene_pathogen.
  5. Nogueira, Teresa; Ana Rosa Botelho; Lucas Bowler; João Inácio. Evolution of Animal Microbial Communities in Response to Environmental Stress. 2020. https://www.frontiersin.org/research-topics/14791/evolution-of-animal-microbial-communities-in-response-to-environmental-stress.
Report
  1. Nogueira, Teresa. 2022. Guild-level microbiome signature associated with COVID-19 severity and prognosis. Rapid Reviews COVID-19. https://doi.org/10.1162/2e3983f5.f4c160b1.
Thesis / Dissertation
  1. Nogueira, Teresa. "La relation entre le contrôle traductionnel de l'expression génétique et la dégradation des ARN messagers chez les bactéries". PhD, Université de paris-Sud, 2001. https://www.theses.fr/2001PA112234.
  2. Nogueira, Teresa. "Study of the de novo methylation pattern of repeated sequences, due to MIP (Methylation Induced Premioticaly), in the filamentous fungus Ascobolus immersus". Degree, Universidade de Lisboa Faculdade de Ciências, 1993.
Translation
  1. Virus de la grippe: les défis du système immunitaire et de la médecine à la lumière de l'évolution. 2021.
    10.5281/ZENODO.5710815
  2. Coronavirus animaux et humains: Évolution et pathogénicité du virus et prevention des maladies. 2021.
    10.5281/ZENODO.5710679

Other

Other output
  1. Jogo (game): Beat Corona. 2020. Margarida Duarte; Nogueira, Teresa; Ana Rosa Botelho; Sandra Cavaco Gonçalves; Ana Duarte; Patricia Tavares Santos; Rita Sousa; Sara Portela. https://projects.iniav.pt/CORONAVIRUS/.
  2. Jogo: um vírus em evolução (Game: an evolving virus). A board game about the evolution of the flu virus. 2019. Nogueira, Teresa; Rita Ponce. https://apbe.weebly.com/uploads/1/2/2/1/122176867/jogo_da_gripe.pdf.
  3. SimulATe software. Simulator of Antibiotic Therapy Effects on the Dynamics of Bacterial Populations. 2017. Pedro H C David; Nogueira, Teresa. https://github.com/Kronopt/SimulATe.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2023/04 Designing for Viral Infection Awareness through PLAYMUTATION CUMULUS Connectivity, and Creativity in times of Conflict – Nature positive/Design for Transformation
University of Antwerp (Antwerp, Belgium)
2022/09/08 The Ecology of Indirect Resistance to Antibiotics IC2AR 2022 -5th International Caparica Congress in Antibiotic Resistance
FCT- University NOVA of Lisbon (Portugal)
2022/09/05 Genomic dynamics and Evolution of Antibiotic Resistance and Bacterial Virulence IC2AR 2022 - 5th International Caparica Congress in Antibiotic Resistance
FCT- University NOVA of Lisbon (Portugal)
2022/01 Dinâmica genómica da resistência a antibióticos em ambientes de aquacultura - o projeto AquaRAM (Genomic dynamics of antibiotic resistance in aquaculture environments - the AquaRAM project) Webiniav
INIAV (Portugal)
2021/11 Learning about COVID-19 and coronavirus diseases in a simple and playful way (book and a game) EvoKE BCN 2021
EvoKE - Evolutionary Knowledge for Everyone (Barcelona, Spain)
2021/10 Are you sure you know why certain plasmids have the ability to transfer between bacteria? 7th Annual Meeting 2021 Frontiers in E3
cE3c (Lisbon, Portugal)
2021/10 Impact of COVID-19 measures on resistance genes diversity in the human microbiome and antibiotic administration 7th Annual Meeting 2021 Frontiers in E3
cE3c (Lisbon, Portugal)
2021/06/10 Comparative Analysis of the Resistome and the Mobilome of Estuarine Aquacultures and Other Aquatic Environments One Health EJP Annual Scientific Meeting 2021
Technical University of Denmark ( Copenhagen)
2021/02 Human connections drive the evolution of metagenomes with virulence and antibiotic-resistance genes ALPHY 2021: Bioinformatics and Evolutionary Genomics
Université de Grenoble Alpes
2020/12 Human microbiome evolution and antibiotic resistance in pandemic times XVI ENBE
Universidade de Aveiro (Aveiro, Portugal)
2020/12 Bacterial persitance: an evolutionary mechanism or a set of errors in lucky bacteria XVI ENBE
Universidade de Aveiro (Aveiro, Portugal)
2020/12 Human social interactions shape the distribution of pathogenicity and antibiotic resistance genes XVI ENBE
Universidade de Aveiro (Aveiro, Portugal)
2020/12 (Re) Searching for Evolution: Portuguese Science curricula analysis from the first to ninth grades XVI ENBE
Universidade de Aveiro (Aveiro, Portugal)
2020/12 Learning about COVID-19 and other coronavirus animal diseases in a simple and playful way: a book and a board and card game XVI ENBE
Universidade de Aveiro (Aveiro)
2020/10 Understanding the correlation between virulence and antibiotic resistance genes in human metagenomes through computational simulations 6th Annual Meeting 2020 Frontiers in E3
cE3c (Portugal)
2020/10 The advantage of dying slowly - the impact of persistence in indirect resistance 6th Annual Meeting 2020 Frontiers in E3
cE3c (Portugal)
2019/12 AquaRAM: an in silico approach to aquaculture microbial resistance 1º Simpósio INIAV para a segurança alimentar sessão satélite “Rumo à Alimentação do Futuro”
INIAV (Vairão, Portugal)
2019 A Evolução nas aprendizagens essenciais do 1.º ciclo do ensino básico (Evolution in the essential learning goals from k1 to k4) O 1.º ciclo do Ensino Básico — Que identidade(s)? Currículo, práticas e formação docente
ESE - IPP (Porto, Portugal)
2017 O Microbioma Humano (The human microbiome)
Escola Superior de Saúde, Instituto Politécnico de Setúbal
2016 Co-selection of Bacterial Antibiotic Resistance and Virulence in Human Gut Microbiomes XII Encontro Nacional de Biologia Evolutiva
Universidade de Aveiro (Aveiro)
2016 Resistência aos Antibióticos (Antibiotic Resistance)
Escola Superior de Educação - IPP
2016 Co-representation of pathogenicity and antibiotic resistance determinants across human populations and environmental biomes worldwide 2nd cE3c Annual Meeting - Frontiers in E3
Faculdade de Ciências da Universidade de Lisboa
2016 Resistência das bactérias aos antibióticos (Bacterial resistance to antibiotics) Semana das Ciências
Escola Secundária de Bocage (Setúbal, Portugal)
2015 Dinâmica evolutiva da patogenicidade bacteriana (Evolutionary dynamics of bacterial pathogenicity) GHTM SESSIONS
Instituto de Higiene e Medicina Tropical, Universidade NOVA de Lisboa (Lisbon, Portugal)
2013 Bacterial social behavior 10th National Congress of Ethology
(Lisboa, Portugal)
2013 Dynamique évolutive des secrétomes et de la pathogénicité bactérienne (Evolutionary dynamics of secretomes and bacterial pathogenicity)
Atelier de Bioinformatique, Université Pierre et Marie Curie – Paris 6, Sorbonne Universités (Paris)
2012 Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria III Encontro Nacional de Biologia Evolutiva
Instituto Gulbenkian de Ciência (Oeiras, Portugal)
2012 Evolution and dynamics of bacterial secretomes Time for science - research on genes, populations & ecosystems at CBA: science for a changing environment
Centro de Biologia Ambiental - FCUL (Lisboa, Portugal)
2012 Evolution and dynamics of bacterial secretomes
Grupo de Evolução Experimental, Centro de Biologia Ambiental, Faculdade de Ciências da Universidade de Lisboa
2011 Bacterial sociality and virulence are mainly encoded on mobile non-core regions of the genome National Congress MicroBiotec'11
Universidade do Minho (Braga, Portugal)
2010 Genome mobility as a modulator of evolution of cooperation in bacteria VI Encontro Nacional de Biologia Evolutiva
Faculdade de Ciências da Universidade de Lisboa (Lisboa, Portugal)
2010 Dinâmica genómica do secretoma de Escherichia coli (Genomic dynamics of the Escherichia coli secretome) Grupo de Evolução Experimental
Centro de Biologia Ambiental, Universidade de Lisboa (Lisboa, Portugal)
2008 Evolutionary dynamics of E. coli’s secretome Atelier de Bioinformatique
Université Pierre et Marie Curie, Paris (Paris, France)
2008 Evolutionary dynamics of E. coli’s secretome Hôpital Cochin
Faculté de Medicine, Université Descartes, (Paris, France)
2008 Estudo dos fatores de virulência de estirpes patogénicas de Enterobactérias (Study of virulence factors of pathogenic Enterobacterial strains) II Jornada de Análises Clínicas e Saúde Pública
Escola Superior de Tecnologia da Saúde do Porto - IPP (Porto, Portugal)
2003 Study of the impact of the ambiguous mRNA decoding on Drosophila melanogaster development II Post-graduation Symposium in Biosciences
Universidade de Aveiro (Aveiro, Portugal)
2002 Controlo da Tradução em Escherichia coli (Translation Control in Escherichia coli)
Centro de Biologia Celular, Universidade de Aveiro (Aveiro, Portugal)
2000 The expression of the E. coli thrS is negatively autoregulated at the translational level, and the mimicry between translational control and enzymatic function of the E. coli threonyl-tRNA synthetase
Instituto de Histologia e Embriologia, Faculdade de Medicina da Universidade de Lisboa (Lisboa, Portugal)
1997 La Fréquence de la Traduction et la Stabilité des ARNm (Translation Frequency and mRNA Stability)
Institut de Biologie Physico-Chimique (Paris, France)

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2022/09/15 - Current Comparative analysis of the genomic profile of metagenomes from estuarine aquaculture sediments across the world
Supervisor of Ilda Andersson Quintana-Lacaci
Microbiologia Aplicada (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2022 - Current Evolutionary dynamics of bacterial genomes and microbiomes
Supervisor of Célia Patrícia Ferreira Domingues
Biodiversidade, Genética e Evolução (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2021/09 - 2023/04/19 Comparative resistome, virulome and mobilome analysis of metagenomes from wild and farm animals
Supervisor of João Filipe Mendes Gil Correia Figueiredo
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2021/09 - 2023/04 Resistome and mobilome of Portuguese aquacultures: metagenomic characterization
Supervisor of Daniel Gonçalves da Silva
Microbiologia Aplicada (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2021/10 - 2022/12 PLAYMUTATION: Virus Epidemiologic-themed Digital Games and Young Adults Attitudes to Viral Outbreaks
Co-supervisor of Frederico Gonçalves Proença
Mestrado em Comunicação Multimédia (Master)
Universidade de Aveiro Departamento de Comunicação e Arte, Portugal
2019 - 2021/12 Genetic linkage and selection of pathogenicity and antibiotic resistance in bacterial genomes
Supervisor of Helena Darmancier Teixeira Moreira da Silveira
Bioinformática e Biologia Computacional (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2018 - 2019/11 Virulence genes and antibiotic resistance genes in microbiomes of human populations - a network perspective
Co-supervisor of Célia Patrícia Ferreira Domingues
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2017 - 2018 SimulATe: a simulator of antibiotic therapy effects on the dynamics of bacterial populations
Supervisor of Pedro Henrique Chorão David
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2015 - 2016 Metagenomic mining of pathogenicity and antibiotic resistance traits across human populations worlwide
Supervisor of Pedro Miguel Agostinho Escudeiro
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal

Event organisation

Event name
Type of event (Role)
Institution / Organization
2022 - 2023/07/05 EvoKE 2023 (2023/07/03 - 2023/07/05)
Congress (Member of the Organising Committee)
University of Bath, United Kingdom
2021 - 2021 XVII ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology (2021/12/16 - 2021/12/17)
Conference (Member of the Organising Committee)
Associação Portuguesa de Biologia Evolutiva, Portugal
2019/10/08 - 2019/10/08 ERASMUS ISLAB - Integrated Science Labs: the innovation of the scientific didactics (2019/10/08 - 2019/10/08) Instituto Nacional de Investigação Agrária e Veterinária, Portugal
2019 - 2019 XV Encontro Nacional de Biologia Evolutiva (XV National Meeting of Evolutionary Biology) (2019 - 2019)
Conference (Member of the Organising Committee)
Associação Portuguesa de Biologia Evolutiva, Portugal
2019 - 2019 XV Encontro Nacional de Biologia Evolutiva (XV National Meeting of Evolutionary Biology) (2019 - 2019)
Conference (Member of the Scientific Committee)
Associação Portuguesa de Biologia Evolutiva, Portugal
2018 - 2018 EuroScitizen COST Action working group meetings (2018 - 2018)
Meeting (Co-organisor)
Instituto Politécnico do Porto Escola Superior de Educação, Portugal
2016 - 2016 Colóquio Resistência aos Antibióticos. O estado da arte da investigação para a prática clínica (Antibiotic Resistance Colloquium. The state of the art of research for clinical practice) (2016 - 2016)
Symposium (Co-organisor)
Hospital-Escola da Universidade Fernando Pessoa, Portugal

Event participation

Activity description
Type of event
Event name
Institution / Organization
2022/07/20 - 2022/07/21 Pedagogical training on game-based learning
Workshop
Game-Based learning
Universidade do Porto Faculdade de Engenharia, Portugal
2020/06 - 2020/06 24TH International Conference on Research in Computational Molecular Biology
Conference
RECOMB 2020
Università degli Studi di Padova Scuola di Ingegneria, Italy
2020/06 - 2020/06 10th RECOMB Satellite Workshop on Massively Parallel Sequencing
Workshop
RECOMB-SEQ 2020
Università degli Studi di Padova Biblioteca Centrale di Ingegneria, Italy
2020/01 - 2020/01 RadCamp 2020 - The Lisbon Edition, the full Bioinformatic processing of RADSeq data
Workshop
Universidade de Lisboa Faculdade de Ciências, Portugal
2019/09 - 2019/10 EuroScitizen Split Working Groups
Meeting
EuroScitizen
2019/04 - 2019/04 EuroScitizen Paris Working Groups meeting
Meeting
EuroScitizen
Muséum National d'Histoire Naturelle, France
2019/02 - 2019/02 EuroScitizen WGs Porto Meeting
Meeting
EuroScitizen
Instituto Politécnico do Porto Escola Superior de Educação, Portugal
2019 - 2019 1ª Edição do Concurso de Comunicação de Ciência em Microbiologia (1st Edition of the Science Communication in Microbiology Contest)
Other
Sociedade Portuguesa de Microbiologia, Portugal
2018/12 - 2018/12 Mainstreaming molecular approaches in national environmental monitoring programs of aquatic ecosystems and biodiversity
Workshop
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2014 - 2014 TecLabs Transferência de conhecimentos e Empreendedorismo - Business Model Canvas (TecLabs Knowledge transfer and Entrepreneurship - Business Model Canvas)
Workshop
Universidade de Lisboa Faculdade de Ciências, Portugal
2011 - 2011 Comunicação de Ciência (Science Communication)
Workshop
VII Enconto Nacional de Biologia Evolutiva
Universidade de Coimbra Museu da Ciência, Portugal
2011 - 2011 Mini-course “Evolutionary Games"
Symposium
Universidade de Lisboa Instituto para a Investigação Interdisciplinar, Portugal
2010 - 2010 Molecular Microbiology / Minisymposium on Bacterial Membranes
Symposium
Institut Pasteur, France
2010 - 2010 I Congresso Internacional da Saúde Gaia-Porto (1st International Health Congress Gaia-Porto)
Congress
Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
2010 - 2010 III Jornadas de Análises Clínicas e Saúde Pública da ESTSP (III ESTSP Conference on Clinical Analysis and Public Health)
Congress
II Jornadas de Análises Clínicas e Saúde Pública
Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
2005 - 2005 I Colóquio de Saúde Ambiental (I Environmental Health Colloquium)
Symposium
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal
2004 - 2004 Infeções Parasitárias (Parasitic Infections)
Workshop
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal
2004 - 2004 II Simpósio da Sociedade Portuguesa de Doenças Metabólicas (II Symposium of the Portuguese Society of Metabolic Diseases)
Symposium
Sociedade Portuguesa de Doenças Metabólicas, Portugal
2004 - 2004 XL Conferências de Genética - Novas perpectivas de rastreio, diagnóstico e tratamento de doenças hereditárias do metabolismo (XL Genetics Conferences - New perspectives for screening, diagnosis and treatment of inherited diseases of metabolism)
Conference
Centro de Genética Médica Doutor Jacinto Magalhães, Portugal
2003 - 2003 The Life of an mRNA
Workshop
Universidade do Porto, Portugal
2003 - 2003 1st Annual Meeting of Portuguese Proteomic network - Procura
Meeting
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal
2002 - 2002 Aplicações da Estatística à Genética (Applications of Statistics to Genetics)
Symposium
Universidade de Aveiro, Portugal
2001 - 2001 Genética ao Serviço da Justiça (Genetics at the Service of Justice)
Symposium
Universidade de Aveiro, Portugal
1997 - 1997 Safety and radioisotopes
Workshop
Institut Curie, France
1996 - 1996 XVI Curso de Atualização de Professores de Geociências (XVI Geosciences Teachers Update Course)
Workshop
1995 - 1995 Curso de atualização em Vulcanismo (Volcanism update course)
Workshop
Universidade de Lisboa Faculdade de Ciências, Portugal

Jury of academic degree

Topic
Role
Candidate name (Type of degree)
Institution / Organization
2023/12/15 PhageSNP: Prediction of the effect of hypermutable phage proteins along Staphylococcus genus
(Thesis) Main arguer
Alexandre Miguel Magalhães Esperança (Master)
Universidade do Minho, Portugal
2023/09 Deciphering the molecular bases of virulence-related phenotypes through multi omic approaches
(Thesis) Arguer
Guillem Santamaria Aguilar (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2023/09 Microplastics in rivers and their role in the spread of pathogens and antibiotic resistance
(Thesis) Main arguer
Inês Alaçada e Silva (Master)
Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2023/07 Post-Processing of phylogenetic trees. On islands, Clumps and (Non-) effective overlap
Thesis Member
Ana Luísa de Almeida Serra Jorge da Silva (PhD)
Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2023/04/27 Resistome and mobilome of Portuguese aquacultures: metagenomic characterization
Supervisor
Daniel Gonçalves Silva (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2023/04/19 Comparative analysis of the genomic profile of metagenomes from estuarine aquaculture sediments across the world
Supervisor
João Filipe Mendes Gil Correia Figueiredo (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2021/12 Genetic linkage and selection of pathogenicity and antibiotic resistance in bacterial genomes
Supervisor
Helena Darmencier Teixeira Moreira da Silveira (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2018 SimulATe: a simulator of antibiotic therapy effects on the dynamics of bacterial populations
Supervisor
Pedro David (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2016 Metagenomic mining of pathogenicity and antibiotic resistance traits across human populations worldwide
Supervisor
Pedro Escudeiro (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal

Ad Hoc journal article review

Journal title (ISSN) Publisher
2024/03 - Current Research in Microbiology (1769-7123) ScienceDirect
2024/01 - Current Scientific Reports (2045-2322) Springer Nature
2023 - Current Nature Food (2662-1355) Nature
2023 - Current PeerJ (2167-8359) PeerJ Publishing
2023 - Current Applied Sciences (2076-3417) MDPI
2022/02 - Current Microbiological Research (0944-5013) ScienceDirect
2022 - Current Food Research International (0963-9969) ScienceDirect
2022 - Current Agriculture (2077-0472) MDPI AG
2022 - Current Communications Biology (2399-3642) Nature
2022 - Current Antibiotics (2079-6382) MDPI AG
2021/09 - Current Journal of Avian Biology (1600-048X) Wiley
2021/09 - Current Animals (2076-2615) MDPI
2021/05 - Current Microbiology Spectrum (2165-0497) American Society for Microbiology
2021/05 - Current Biology (2079-7737) MDPI AG
2020/12 - Current International Research Journal of Public and Environmental Health (2360-8803) Journal Issues Limited
2020/12 - Current JAC-Antimicrobial Resistance (2632-1823) Oxford University Press
2020/11 - Current BioMed Research International (2314-6141) Hindawi Limited
2020/06 - Current Computational and Structural Biotechnology Journal (2001-0370) Elsevier
2020/02 - Current Database (1758-0463) Oxford University Press
2020 - Current Frontiers in Microbiology (1664-302X) Frontiers Media SA
2019/11 - Current Evolutionary Bioinformatics (1176-9343) SAGE Publishing
2019/09 - Current The ISME Journal (1751-7370) Springer Science and Business Media LLC
2019/07 - Current Cancer Chemotherapy and Pharmacology (1432-0843) Springer-Verlag
2019/06 - Current World Journal of Pediatrics (1867-0687) Springer-Verlag
2019/05 - Current mSystems (2379-5077) American Society for Microbiology
2019/04 - Current Data in Brief (2352-3409) Elsevier
2018/06 - Current American Journal of Medicine and Medical Sciences (2165-901X) Scientific and Academic Publishing
2016/07 - Current American Journal of Bioinformatics Research (2167-6992) Scientific and Academic Publishing
2016/04 - Current Clinical Medicine and Diagnostics (2163-1433) Scientific and Academic Publishing
2016/03 - Current Bioinformatics (1460-2059) Oxford University Press
2014/10 - Current American Journal of Life Sciences (2328-5702) Science Publishing Group
2013/03 - Current FEMS Microbiology Letters (1574-6968) Oxford University Press
2012/11 - Current Journal of Microbiology Research (2166-5885) Scientific and Academic Publishing
2012/09 - Current American Journal of Biochemistry (2163-3010) Scientific and Academic Publishing
2012/07 - Current Journal of Health Science (1347-5207) Pharmaceutical Society of Japan

Association member

Society Organization name Role
2017 - Current EvoKE - Evolutionary Knowledge for Everyone Board member
2013 - Current SPM - Sociedade Portuguesa de Microbiologia
2011 - Current APBE - Associação Portuguesa de Biologia Evolutiva
2003 - Current Associação Portuguesa de Doutorados em França
2003 - Current SFBBM - Societé Française de Biochimie et Biologie Moleculaire
1995 - Current Sociedade Portuguesa de Genética
1989 - Current Ordem dos Biólogos

Committee member

Activity description
Role
Institution / Organization
2019 - Current Elected Member of the Board
Member
EvoKE - Evolutionary Knowledge for Everyone , France
2019 - Current Member of the scientific council
Member
Instituto Nacional de Investigação Agrária e Veterinária, Portugal
2019 - Current Member of the scientific council
Member
Centro de Ecologia Evolução e Alterações Ambientais, Portugal
2018 - 2022 Elected Member of the board
Member
Associação Portuguesa de Biologia Evolutiva, Portugal
2019 - 2020 EvoKE's national representatives' task force leader
Member
EvoKE - Evolutionary Knowledge for Everyone , France
2018 - 2020 Management Committee substitute member
Member
European Cooperation in Science and Technology (COST), Belize
2009 - 2015 Member of the scientific council
Member
Centro de Ecologia Evolução e Alterações Ambientais, Portugal

Conference scientific committee

Conference name Conference host
2021 - Current Microbiologia 2022 SPM - Sociedade Portuguesa de Microbiologia
2019 - 2019 XV Encontro Nacional de Biologia Evolutiva (XV National Meeting of Evolutionary Biology) Ciimar - UP
2016 - 2016 Colóquio Resistência aos Antibióticos (Antibiotic Resistance Colloquium) Hospital Escola da Universidade Fernando Pessoa
2011 - 2011 IV Jornadas de Análises Clínicas e Saúde Pública da ESTSP (IV ESTSP Conference on Clinical Analysis and Public Health) ESTSP-IPP
2008 - 2008 II Jornada de Análises Clínicas e Saúde Pública (II Conference on Clinical Analysis and Public Health) ESTSP - IPP

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2022/02 - Current Resistência aos AB no ambiente (Antibiotic resistance in the environment) ONE HEALTH Saúde humana, Saúde animal, Saúde ambiental Universidade de Lisboa Faculdade de Medicina, Portugal
2016 - Current Advanced course Bioinformatics Analysis of Biological Sequences (Curso de doutoramento (conclusão de unidades curriculares)) Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2019 Simulando o efeito dos antibióticos na dinâmica das comunidades microbianas (Simulating the effect of antibiotics on the dynamics of microbial communities) Teacher training (Outros) Universidade de Lisboa Museu Nacional de História Natural, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2018 - 2019 Vírus da gripe: Desafios do sistema imunitário e da medicina à luz da evolução (Influenza viruses: Challenges of the immune system and medicine in the light of evolution) Teacher training (Outros) Universidade de Lisboa Museu Nacional de História Natural, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2016 - 2016 Laboratório de Microbiologia: as comunidades bacterianas e a saúde humana (Microbiology Laboratory: bacterial communities and human health) Teacher training (Outros) Escola Secundária Gama Barros, Portugal
2015 - 2016 Evolução biológica nas novas metas curriculares do 9º ano: evolução da resistência a antibióticos (Biological evolution in the new 9th grade curricular goals: evolution of antibiotic resistance) Teacher training (Outros) Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal

Centro Ciencia Viva , Portugal

Instituto Politécnico do Porto Instituto Superior de Engenharia do Porto, Portugal
2012 - 2012 Desenho de Primers e Bioinformática (Primer design and bioinformatics) Análises Clínicas e de Saúde Pública (Mestrado integrado) Instituto Superior de Saúde do Alto Ave, Portugal
2011 - 2012 Métodos Instrumentais de Análise (Instrumental Methods of Analysis) Análises Clínicas e Saúde Pública (Mestrado integrado) Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
2007 - 2012 Biologia Molecular I e II (Molecular Biology I and II) Análises Clínicas e de Saúde Pública (Licenciatura) Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
2003 - 2007 Microbiologia, Virologia e Parasitologia (Microbiology, Virology and Parasitology) Enfermagem (Licenciatura) Escola Superior de Enfermagem do Porto, Portugal
2004 - 2006 Bioquímica e Biofísica (Biochemistry and Biophysics) Enfermagem (Licenciatura) Universidade Católica Portuguesa Escola de Enfermagem, Portugal
2002 - 2006 Microbiologia e Parasitologia (Microbiology and Parasitology) Enfermagem (Licenciatura) Universidade Católica Portuguesa Escola de Enfermagem, Portugal
1995 - 1996 Biologia (Biology) (Ensino secundário) Escola Secundária de Bocage, Portugal
1995 - 1996 Bioquímica (Biochemistry) (Ensino secundário) Escola Secundária de Bocage, Portugal
1995 - 1996 Ciências da Terra e da Vida (Earth and Life Sciences) (Ensino secundário) Escola Secundária de Bocage, Portugal

Evaluation committee

Activity description
Role
Institution / Organization Funding entity
2022/07 - Current Referee for the Marsden Fund
Evaluator
Marsden Fund Council - Royal Society Te Aparangi, New Zealand Royal Society of New Zealand Marsden Fund
2020 - Current Board of experts for Scientific Projects Evaluation of ANR - Agence Nationale de la Recherche
Evaluator
Agence nationale de la recherche, France
2020 - Current Board of experts for ERC - European Research Council na área científica Genetics, Genomics, Bioinformatics and Systems Biology
Specialist
European Research Council, Belgium
2022/09 - 2023/03 Invited Editor for the Special Issue "Genomic Analysis of Antibiotics Resistance in Pathogens, 2nd Edition". Antibiotics Journal (MDPI)
Specialist
Multidisciplinary Digital Publishing Institute AG, Switzerland
2020 - 2022 Invited Editor for the Special Issue "Genomic Analysis of Antibiotics Resistance in Pathogens". Antibiotics Journal (MDPI)
Specialist
Multidisciplinary Digital Publishing Institute AG, Switzerland
2020/07 - 2021/04 Guest Invited Editor for the Research Topic "Evolution of Animal Microbial Communities in Response to Environmental Stress" in the sections: Microbial Symbioses, Evolutionary and Genomic Microbiology, and Systems Microbiology. Journals: Frontiers in Microbiology, Frontiers in Marine Science and Frontiers in Genetics
Specialist
Frontiers Media SA, Switzerland

Interview (newspaper / magazine)

Activity description Newspaper / Forum
2022/06 Interview on the genomic evolution of Monkeypox Jornal Público
2020/09/09 Interview for the American Society for Microbiology American Society for Microbiology
2013 Interview to APBE - Associação Portuguesa de Biologia Evolutiva NewsletterAPBE N1 Julho2013

Interview (tv / radio show)

Program Topic
2022/06 - Current Radio Terra Nova Evolution
2021/01/21 - Current Antena 1 - Os dias do Futuro Um livro digital e um jogo de tabuleiro sobre a Covid
2019/05/07 - 2019/05/07 TVI24 Comunidades menos expostas a antibióticos estão mais protegidas

Journal scientific committee

Journal title (ISSN) Publisher
2022/04 - Current Microorganisms (2076-2607) MDPI AG
2020/12 - Current Antibiotics (2079-6382) MDPI AG
2020/06 - Current Frontiers in Microbiology (1664-302X) Frontiers Media SA
2020/06 - Current Frontiers in Marine Science (2296-7745) Frontiers Media SA
2020/06 - Current Frontiers in Genetics (1664-8021) Frontiers Media SA

Other jury / evaluation

Activity description Institution / Organization
2022/06/01 - Current Evaluation of Marsden Fund Research Project Proposals Marsden Fund Council - Royal Society Te Aparangi, New Zealand
2020/11 - Current Scientific Project Evaluation for Agence Nationale de la Recherche Agence nationale de la recherche, France
2020/04 - Current Evaluation of ERC Grant on Genetics, Genomics, Bioinformatics and Systems Biology European Research Council, Belgium
Distinctions

Award

2022 Merit Award - Casa das Ciências
Casa das Ciências , Portugal
2020 Merit Award - Casa das Ciências
Casa das Ciências , Portugal
2018 Concurso Outreach APBE 2018 (APBE 2018 Outreach Contest)
Associação Portuguesa de Biologia Evolutiva, Portugal

Title

2015 Accredited trainer in Laboratory Techniques
Universidade do Minho, Portugal

Conselho Científico-Pedagógico da Formação Contínua (CCPFC), Portugal
2015 Accredited trainer in Natural Sciences
Universidade do Minho, Portugal

Conselho Científico-Pedagógico da Formação Contínua (CCPFC), Portugal
2015 Accredited trainer in Biology
Universidade do Minho, Portugal

Conselho Científico-Pedagógico da Formação Contínua (CCPFC), Portugal
2014 Qualification for higher education in Biochemistry and Molecular Biology
Conseil National des Universités , France
2014 Qualification for higher education in Cellular Biology
Conseil National des Universités , France
2014 Qualification for higher education in Population Biology and Ecology
Conseil National des Universités , France
1993 Qualification for Teaching Mathematics and Natural Sciences - k5 and k6
Ministério da Educação, Portugal
1993 Qualification for Teaching Biology and Geology - k7 to k12
Ministério da Educação, Portugal

Other distinction

2020 Most downloaded Paper 2018-2019 - Drug Development Research
John Wiley & Sons Inc, United Kingdom
2020 Most read paper September 2020 - mSphere
American Society for Microbiology, United States
2020 Top most read paper September-December 2020 - mSphere
American Society for Microbiology, United States
2019 Top most read paper June-July 2019 - mSphere
American Society for Microbiology, United States
2010 F1000 Prime Recommendation - Genomics & Genetics
Faculty of 1000 Ltd, United Kingdom
2010 F1000 Prime Recommendation - Ecology/Theoretical Ecology
Faculty of 1000 Ltd, United Kingdom
2003 F1000 Prime Recommendation - Microbiology
Faculty of 1000 Ltd, United Kingdom