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I always had a very strong interest in the relationship of structure and dynamics in protein function. This was the reason why, after finishing a Diploma in Pharmacy and a MSc/BSc in Molecular Biology at the University of Vienna, I decided to join to the group of Dr Paul Schanda, a specialist in protein dynamics by NMR, at the IBS (Grenoble, France). During my PhD I studied the dynamic interaction of the mitochondrial intermembrane space chaperone TIM910 with several membrane protein substrates. In the course of this project I set up a purification procedure and an interaction assay for the TIM910 chaperone and its highly aggregation prone substrates. I was able to characterise this highly challenging system using an integrative structural biology approach. I used NMR and yeast mutational experiments to determine the membrane protein binding site and analytical ultracentrifugation, small angle X-ray scattering and molecular dynamics to define the overall structure of the complex between the chaperone and the membrane protein partners. I have published three articles on this topic, with two of them as first author (Weinhäupl K et al, Cell. 2018, doi:10.1016/j.cell.2018.10.039; Sucec I et al Sci Adv. 2020, doi:10.1126/sciadv.abd0263; Weinhäupl K et al, Structure. 2021, doi:10.1016/j.str.2021.04.009) and I was awarded the "Prix Nine Choucroun" for the best PhD thesis in Biophysics/Biochemistry in France in 2017-2018. In a side project I also worked on the ClpC1 protein of Mycobacterium tuberculosis to understand the importance of protein dynamics in substrate recognition and drug action. I demonstrated that arginine-phosphate binding to the ClpC1 N-terminal domain induces millisecond dynamics. I showed that these dynamics are caused by conformational changes and do not result from unfolding or oligomerization of this domain. Cyclomarin binding to this domain specifically blocked these N-terminal dynamics. On the basis of these results, I proposed a mechanism of action involving cyclomarin-induced restriction of ClpC1 dynamics, which modulates the chaperone enzymatic activity leading eventually to cell death (Weinhäupl K et al, J Biol Chem. 2018, doi:10.1074/jbc.RA118.002251; Felix J et al, Sci Adv. 2019, doi:10.1126/sciadv.aaw3818). After working one year in the Hospital pharmacy of the Kaiser Franz-Josef-Spital in Vienna, I joined the lab of Dr Morais-Cabral at the i3S in Porto in July 2019 to work on the influence of the second messenger cyclic-di-AMP on potassium homeostasis. In September 2019 I was awarded a fellowship from the Austrian Science Fund to continue my research on this topic and focus more specifically on the structure and function of the diadenylate cyclase CdaA. I was also awarded a highly competitive HFSP fellowship, which I declined. Since December 2020 I hold a junior researcher position at i3S funded through the "FCT Stimulus of Scientific Employment, Individual Support 2018 Call". In 2021, as PI, I was awarded an Instruct remote Internship to study and optimise the CdaA-CdaR-GlmM complex for cryo-electron microscopy and in 2022 a "FCT exploratory project" to continue my work on this topic. To support my training as a cryo-electron microscopist I hold several international and national collaborations. Most importantly with Prof. Thomas Marlovits from CSSB Hamburg, where I learned cryo-EM techniques during several visits, but also with Dr Jan Felix from the University of Ghent and Dr Marcos Gragera and Dr Teresa Bueno from CSIC Madrid on the M. tuberculosis drug target ClpC1 as well as with Dr Oliver Schraidt from INL Braga and Dmitry Semchonok from ITQB, Lisbon. In December 2023 I have obtained an Assistant researcher position in the "Individual Call to Scientific Employment Stimulus - 6th Edition" to continue my research on new antibiotic targets using cryo-EM.
Identification

Personal identification

Full name
Katharina Weinhäupl

Citation names

  • Weinhäupl, Katharina

Author identifiers

Ciência ID
EB1E-B7EB-757A
ORCID iD
0000-0002-9552-9876

Email addresses

  • kweinhaeupl@ibmc.up.pt (Professional)

Knowledge fields

  • Medical and Health Sciences - Basic Medicine - Pharmacology and pharmacy
  • Natural sciences - Biological Sciences - Biophysics
  • Natural sciences - Biological Sciences - Biochemistry
  • Natural sciences - Biological Sciences - Molecular Biology

Languages

Language Speaking Reading Writing Listening Peer-review
German (Mother tongue)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Intermediate (B1) Upper intermediate (B2) Elementary (A2) Upper intermediate (B2)
Portuguese Elementary (A2) Intermediate (B1) Elementary (A2) Intermediate (B1)
Education
Degree Classification
2014/10/01 - 2018/01/11
Concluded
Biologie Structurale et Nanobiologie (Doctorat)
Major in Structural Biology
Université Grenoble Alpes, France
"Atomic-resolution studies of structure, dynamics and interactions in chaperone assemblies by Nuclear Magnetic Resonance (NMR)" (THESIS/DISSERTATION)
2011/03/01 - 2014/01/31
Concluded
Molecular biology (Master)
Major in Structural Biology
Max F Perutz Laboratories Center of Molecular Biology, Austria
"Biochemical and structural characterisation of the interaction of NGAL with its endocytic receptor" (THESIS/DISSERTATION)
2006/10/01 - 2013/01/01
Concluded
Pharmazie (Magister)
Major in Pharmakognosie
Universität Wien Pharmaziezentrum, Austria
"Inhibition of Vascular smooth muscle cell migration by Indirubin-3’-monoxime" (THESIS/DISSERTATION)
2007/10/01 - 2010/10/31
Concluded
Biology (Bachelor)
Major in Molecular Biology
Max F Perutz Laboratories Center of Molecular Biology, Austria
"Studying the transcription factor c-Myc by NMR" (THESIS/DISSERTATION)
Affiliation

Science

Category
Host institution
Employer
2019/07/01 - Current Postdoc (Research) Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal

Others

Category
Host institution
Employer
2018/05/01 - 2019/04/30 Clinical Pharmacist Sozialmedizinisches Zentrum Süd Kaiser-Franz-Josef-Spital, Austria
Projects

Grant

Designation Funders
2023/01/01 - 2024/06/30 Structure and function of the diadenylate cyclase CdaA
2022.03075.PTDC
Principal investigator
Associação para a Inovação e Desenvolvimento da FCT
Ongoing
2021/11/01 - 2022/04/30 Structure and Function of the Diadenylate Cyclase CdaA
Application ID: 1768
Principal investigator
Concluded
2019/12/01 - 2020/11/30 Structure and function of the diadenylate cyclase CdaA
J-4410-B
Post-doc Fellow
Fonds zur Förderung der wissenschaftlichen Forschung
Concluded

Contract

Designation Funders
2020/12/01 - Current Structure and function of CdaA: a diadenylate cyclase with a central role in bacterial physiology.
CEECIND/03440/2018
Researcher
Fundação para a Ciência e a Tecnologia
Ongoing
2024/06/01 - 2030/05/31 Structure and Function of the CdaA-CdaR-GlmM complex
2023.07797.CEECIND
Principal investigator
Fundação para a Ciência e a Tecnologia
Ongoing
2014/03/01 - 2018/04/30 Atomic-resolution studies of structure, dynamics and interactions in chaperone assemblies by NMR spectroscopy.
N/A
PhD Student Fellow
Université Grenoble Alpes
Concluded
Outputs

Publications

Conference poster
  1. Ferreira-Teixeira, Paula F; Weinhäupl, Katharina; Fernandes, Andreia S.; Pombinho, António; Harley, Carol Ann; Morais-Cabral, João. "TARGETING THE BACTERIAL c-di-AMP SIGNALING PATHWAY: SCREENING FOR SMALL-MOLECULE MODULATORS OF CdaA". Paper presented in Instruct-ERIC Biennial Structural Biology Conference 2024, 2024.
  2. Teixeira, Paula; Weinhäupl, Katharina; Harley, Carol Ann; Fernandes, Andreia S.; Pombinho, António; Morais-Cabral, João. "Optimizing a screening assay for small-molecules that modulate CdaA activity". Paper presented in Biophysics Festival 2023- 3rd Meeting of Young Biophysicists, 2023.
Journal article
  1. Weinhäupl, Katharina; Marcos Gragera; M. Teresa Bueno-Carrasco; Rocío Arranz; Olga Krandor; Tatos Akopian; Raquel Soares; et al. "Structure of the drug target ClpC1 unfoldase in action provides insights on antibiotic mechanism of action.". The Journal of biological chemistry 298 (2022):
    Open access • Accepted • 10.1016/j.jbc.2022.102553
  2. Weinhäupl, Katharina; Wang, Yong; Hessel, Audrey; Brennich, Martha; Lindorff-Larsen, Kresten; Schanda, Paul. "Architecture and assembly dynamics of the essential mitochondrial chaperone complex TIM9·10·12". Structure 29 9 (2021): 1065-1073.e4. http://dx.doi.org/10.1016/j.str.2021.04.009.
    10.1016/j.str.2021.04.009
  3. Sucec, Iva; Wang, Yong; Dakhlaoui, Ons; Weinhäupl, Katharina; Jores, Tobias; Costa, Doriane; Hessel, Audrey; et al. "Structural basis of client specificity in mitochondrial membrane-protein chaperones". Science Advances 6 51 (2020): eabd0263. http://dx.doi.org/10.1126/sciadv.abd0263.
    Published • 10.1126/sciadv.abd0263
  4. Felix, Jan; Weinhäupl, Katharina; Chipot, Christophe; Dehez, François; Hessel, Audrey; Gauto, Diego F.; Morlot, Cecile; et al. "Mechanism of the allosteric activation of the ClpP protease machinery by substrates and active-site inhibitors". Science Advances 5 9 (2019): eaaw3818. http://dx.doi.org/10.1126/sciadv.aaw3818.
    10.1126/sciadv.aaw3818
  5. Weinhäupl, Katharina; Lindau, Caroline; Hessel, Audrey; Wang, Yong; Schütze, Conny; Jores, Tobias; Melchionda, Laura; et al. "Structural Basis of Membrane Protein Chaperoning through the Mitochondrial Intermembrane Space". Cell 175 5 (2018): 1365-1379.e25. http://dx.doi.org/10.1016/j.cell.2018.10.039.
    Published • 10.1016/j.cell.2018.10.039
  6. Weinhäupl, Katharina; Brennich, Martha; Kazmaier, Uli; Lelievre, Joel; Ballell, Lluis; Goldberg, Alfred; Schanda, Paul; Fraga, Hugo. "The antibiotic cyclomarin blocks arginine-phosphate–induced millisecond dynamics in the N-terminal domain of ClpC1 fromMycobacterium tuberculosis". Journal of Biological Chemistry 293 22 (2018): 8379-8393. http://dx.doi.org/10.1074/jbc.ra118.002251.
    Published • 10.1074/jbc.ra118.002251
  7. Kurauskas, Vilius; Hessel, Audrey; Ma, Peixiang; Lunetti, Paola; Weinhäupl, Katharina; Imbert, Lionel; Brutscher, Bernhard; et al. "How Detergent Impacts Membrane Proteins: Atomic-Level Views of Mitochondrial Carriers in Dodecylphosphocholine". The Journal of Physical Chemistry Letters 9 5 (2018): 933-938. http://dx.doi.org/10.1021/acs.jpclett.8b00269.
    10.1021/acs.jpclett.8b00269
  8. Rennella, Enrico; Sára, Tomáš; Juen, Michael; Wunderlich, Christoph; Imbert, Lionel; Solyom, Zsofia; Favier, Adrien; et al. "RNA binding and chaperone activity of theE. colicold-shock protein CspA". Nucleic Acids Research (2017): gkx044. http://dx.doi.org/10.1093/nar/gkx044.
    10.1093/nar/gkx044
  9. Cabedo Martinez, Ana-Isabel; Weinhäupl, Katharina; Lee, Wing-Kee; Wolff, Natascha A.; Storch, Barbara; Zerko, Szymon; Konrat, Robert; et al. "Biochemical and Structural Characterization of the Interaction between the Siderocalin NGAL/LCN2 (Neutrophil Gelatinase-associated Lipocalin/Lipocalin 2) and the N-terminal Domain of Its Endocytic Receptor SLC22A17". Journal of Biological Chemistry 291 6 (2015): 2917-2930. http://dx.doi.org/10.1074/jbc.m115.685644.
    Published • 10.1074/jbc.m115.685644
  10. Blaževic, Tina; Schaible, Anja M.; Weinhäupl, Katharina; Schachner, Daniel; Nikels, Felix; Weinigel, Christina; Barz, Dagmar; et al. "Indirubin-3'-monoxime exerts a dual mode of inhibition towards leukotriene-mediated vascular smooth muscle cell migration". Cardiovascular Research 101 3 (2013): 522-532. http://dx.doi.org/10.1093/cvr/cvt339.
    Published • 10.1093/cvr/cvt339
  11. Lichtenecker, Roman J.; Weinhäupl, Katharina; Schmid, Walther; Konrat, Robert. "a-Ketoacids as precursors for phenylalanine and tyrosine labelling in cell-based protein overexpression". Journal of Biomolecular NMR 57 4 (2013): 327-331. http://dx.doi.org/10.1007/s10858-013-9796-9.
    Published • 10.1007/s10858-013-9796-9
  12. Lichtenecker, Roman J.; Weinhäupl, Katharina; Reuther, Lukas; Schörghuber, Julia; Schmid, Walther; Konrat, Robert. "Independent valine and leucine isotope labeling in Escherichia coli protein overexpression systems". Journal of Biomolecular NMR 57 3 (2013): 205-209. http://dx.doi.org/10.1007/s10858-013-9786-y.
    Published • 10.1007/s10858-013-9786-y
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2022/09/29 Structure of the drug target ClpC1 in action provides insights on antibiotic mechanism of action Robert Konrat’s 60th: From Dynamics to Disorder and Beyond
University of Vienna
2020/11/30 Atomic-resolution studies of structure, dynamics and interactions in chaperone assemblies by NMR spectroscopy Prix Nine Choucroun Fondation Edmond de Rothschild 2020
Institut de Biologie Physico-Chimique (IBPC) (Paris, France)
2018/03/19 Structural Basis of Membrane Protein Chaperoning Through the Mitochondrial Intermembrane Space INEXT ANNUAL USERS MEETING 2018
ESRF (Grenoble, France)
2017/03/07 The mechanism of chaperone-mediated transport of membrane proteins into mitochondria revealed by solution-NMR, SAXS and native mass-spectrometry Advanced Isotopic Labeling Methods for Integrated Structural Biology International Workshop (AILM 2017)
Institut de Biologie Structurale (Grenoble, France)

Event participation

Activity description
Type of event
Event name
Institution / Organization
2022/07/09 - 2022/07/14 IUBMB FEBS PABMP Congress 2022
Congress
2022/07/06 - 2022/07/09 IUBMB FEBS PABMP Young Scientist Forum
Meeting
2017/05/14 - 2017/05/19 This EMBO Conference is pluridisciplinary and brings together structural biologists, biochemists and cell and molecular biologists who study the actions of chaperones and protein degradation machines in cells and tissues. Dysfunction of protein quality control is at the origin of a broad range of age-related diseases including the devastating neurodegenerative diseases such as Alzheimer's, Parkinson's and prion diseases. Aging and protein misfolding diseases are an integrated part of this EMBO Conference, as well as potential therapeutics.
Conference
Protein quality control: Success and failure in health and disease. Sant Feliu de Guixols, Spain
2016/04/10 - 2016/04/15 Main international conference in the field of experimental nuclear magnetic resonance involving topics from applied research, basic science and industry.
Conference
ENC 2016 - 57th Experimental Nuclear Magnetic Resonance Conference. Pittsburg, PA, United States
2015/07/31 - 2015/08/07 The course provides practical training in important aspects of using solution state NMR spectroscopy for studying the structure, dynamics and function of biomolecular macromolecules. The emphasis is on setting up experiments on the spectrometer (optimizing parameters, pulse programs), on processing and analyzing the NMR data and on structure calculations in a hands-on fashion. Topics covered include: triple resonance pulse seuqences, RDCs, NMR relaxation measurements and data analysis, PREs, structure calculation and validation.
Workshop
EMBO Practical Course: Structure, dynamics and function of biomacromolecules by NMR
Technische Universität München Fakultät für Chemie, Germany
Distinctions

Award

2020 Prix Nine Choucroun Fondation Edmond de Rothschild 2020
Fondation Edmond de Rothschild, France

Title

2018 PhD
Université Grenoble Alpes, France
2014 MSc
Universität Wien Zentrum für Molekulare Biologie, Austria
2013 Mag.pharm.
Universität Wien Pharmaziezentrum, Austria
2010 BSc
Universität Wien Zentrum für Molekulare Biologie, Austria

Other distinction

2019 shortlisted for the International Birnstiel Award for Doctoral Research in Molecular Life Sciences 2019 with an honourable mention: www.imp.ac.at/achievements/ birnstiel-award/award-ceremony-and-recipients/
Research Institute of Molecular Pathology, Austria