???global.info.a_carregar???
Identification

Personal identification

Full name
Luís António Bastião Silva

Citation names

  • Silva, Luís Bastião

Author identifiers

Ciência ID
DE19-2A28-00C8
ORCID iD
0000-0001-8513-7185

Websites

Knowledge fields

  • Engineering and Technology - Electrotechnical Engineering, Electronics and Informatics
  • Exact Sciences - Computer and Information Sciences - Computer Sciences

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Spanish; Castilian Elementary (A2) Elementary (A2) Elementary (A2) Elementary (A2) Elementary (A2)
Affiliation

Teaching in Higher Education

Category
Host institution 		Employer
2021/10/11 - Current Invited Assistant Professor (University Teacher) Universidade de Aveiro, Portugal
Universidade de Aveiro, Portugal

Others

Category
Host institution 		Employer
2017/11/16 - Current CTO BMD software, Portugal
2015/11/16 - 2017/11/16 Research and Developer BMD software, Portugal
Projects

Grant

Designation Funders
2012/01/01 - 2015/11/13 European Medical Information Framework (EMIF)
EMIF
PhD Student Fellow
Universidade de Aveiro Instituto de Engenharia Eletrónica e Informática de Aveiro, Portugal
 Innovative Medicines Initiative
Concluded

Contract

Designation Funders
2021/11/01 - Current EPND - European Platform for Neurodegenerative Diseases
EPND
2021/11/01 - Current HfPT – Health from Portugal
HfPT
Other
2020/06/01 - 2023/06/30 iPATH
iPATH
2020/10/15 - 2021/10/14 SIARC
SIARC
Concluded

Other

Designation Funders
2015/11/16 - Current Creating medically-driven integrative bioinformatics applications focused on oncology, CNS disorders and their comorbidities (MedBioinformatics)
MedBioinformatics
Post-doc
BMD software, Portugal
 Horizon 2020
Concluded
2020/01/01 - 2024/06/30 IMAGE-IN - Imaging infections: integrated multiscale visualization of infections and host response.
IMAGE-IN
Supervisor
Concluded
2018/06/27 - 2019/12/23 MammoAssist - Detection of microcalcifications in mammography
MammoAssist
Software Developer
BMD software, Portugal
Outputs

Publications

Book
  1. Almeida, J.R.; Monteiro, E.; Silva, L.B.; Pazos, A.; Oliveira, J.L.. A recommender system based on cohorts' similarity. 2020.
    10.3233/SHTI200353
  2. Maia, F.; Silva, L.B.; Oliveira, J.L.. Biomedical informatics - How to choose the best tool for each task. 2018.
    10.3233/978-1-61499-852-5-406
  3. Matos, P.; Silva, L.A.B.; Godinho, T.M.; Costa, C.. A dynamic approach to support interoperability for medical reports using DICOM SR. 2017.
    10.3233/978-1-61499-678-1-461
  4. Bastião Silva, L.A.; Días, C.; Van Der Lei, J.; Oliveira, J.L.. Architecture to Summarize Patient-Level Data Across Borders and Countries. 2015.
    10.3233/978-1-61499-564-7-687
  5. Bastiaõ Silva, L.A.; Ribeiro, L.S.; Santos, M.; Costa, C.; Oliveira, J.L.. Screening Radiation Exposure for Quality Assurance. 2014.
    10.3233/978-1-61499-432-9-622
  6. Santos, M.; Bastião, L.; Costa, C.; Silva, A.; Rocha, N.. Clinical data mining in small hospital PACS: Contributions for radiology department improvement. 2014.
    10.4018/978-1-4666-6339-8.ch003
  7. Godinho, T.M.; Bastiao Silva, L.A.; Costa, C.; Oliveira, J.L.. Multi-provider Architecture for Cloud Outsourcing of Medical Imaging Repositories. 2014.
    10.3233/978-1-61499-432-9-146
  8. Santos, M.; Costa, C.; Bastião, L.; Silva, A.; Rocha, N.. Clinical data mining in small hospital PACS: Contributions for radiology department improvement. 2013.
    10.4018/978-1-4666-3667-5.ch016
  9. Santos, M.; Bastião, L.; Costa, C.; Silva, A.; Rocha, N.. DICOM and clinical data mining in a small hospital PACS: A pilot study. 2011.
    10.1007/978-3-642-24352-3_27
Conference paper
  1. Lebre, R.; Silva, L.B.; Costa, C.. "Decentralizing the storage of a DICOM compliant PACS". 2021.
    10.1109/BIBM52615.2021.9669902
  2. Gupta, Y.; Costa, C.; Pinho, E.; Silva, L.A.B.; Mandal, S.; Neugebauer, U.. "Dicomization of LSM fluorescence composite microscopic image with its bioimaging information". 2021.
    10.1109/CBMS52027.2021.00086
  3. Vilares, P.; Ferreira, J.; Silva, L.B.; Silva, A.. "A high specificity deep learning approach with focus on breast cancer screening". 2021.
    10.1109/BIBM52615.2021.9669801
  4. Gupta, Y.; Costa, C.; Pinho, E.; Silva, L.A.B.. "Improving the Visualization and Dicomization process for the Stacked Whole Slide Imaging". 2021.
    10.1109/BIBM52615.2021.9669349
  5. Baptista, T.; Silva, L.B.; Costa, C.. "Highly scalable medical imaging repository based on Kubernetes". 2021.
    10.1109/BIBM52615.2021.9669559
  6. Gupta, Y.; Costa, C.; Pinho, E.; Bastiao Silva, L.A.. "A DICOM Standard Pipeline for Microscope Imaging Modalities". 2021.
    10.1109/ISCC53001.2021.9631529
  7. Almeida, J.R.; Monteiro, E.; Silva, L.B.; Pazos Sierra, A.; Oliveira, J.L.. "A recommender system to help discovering cohorts in rare diseases". 2020.
    10.1109/CBMS49503.2020.00012
  8. Fajarda, O.; Silva, L.B.; Rijnbeek, P.R.; Van Speybroeck, M.; Oliveira, J.L.. "A methodology to perform semi-automatic distributed EHR database queries". 2018.
    10.5220/0006579701270134
  9. Almeida, J.R.; Godinho, T.M.; Silva, L.B.; Costa, C.; Oliveira, J.L.. "Services Orchestration and Workflow Management in Distributed Medical Imaging Environments". 2018.
    10.1109/CBMS.2018.00037
  10. Lopes, P.; Bastião, L.; Oliveira, J.L.. "I2x: An Automated Real-Time Integration and Interoperability Platform (Short Paper)". 2016.
    10.1109/SOCA.2015.16
  11. Santos, M.; Bastião, L.; Silva, A.; Rocha, N.. "DICOM Metadata Analysis for Population Characterization: A Feasibility Study". 2016.
    10.1016/j.procs.2016.09.169
  12. Godinho, T.M.; Almeida, E.; Bastião Silva, L.A.; Costa, C.. "Integrating multiple data sources in a cardiology imaging laboratory". 2016.
    10.1109/HealthCom.2016.7749524
  13. Monteiro, E.; Costa, C.; Oliveira, J.L.; Campos, D.; Silva, L.B.. "Caching and prefetching images in a web-based DICOM viewer". 2016.
    10.1109/CBMS.2016.68
  14. Santos, M.; Bastião, L.; Queirós, A.; Silva, A.; Rocha, N.P.. "Information model for radiology performance indicators based on DICOM". 2015.
  15. Santos, M.; Bastião, L.; Neves, N.; Francisco, D.; Silva, A.; Rocha, N.P.. "DICOM Metadata Access, Consolidation and Usage in Radiology Department Performance Analysis. A Non-proprietary Approach". 2015.
    10.1016/j.procs.2015.08.579
  16. Lopes, P.; Bastião, L.; Oliveira, J.L.. "Challenges and opportunities for exploring patient-level data: Preliminary results". 2015.
    10.1109/CISTI.2015.7170531
  17. Godinho, T.M.; Silva, L.M.; Costa, C.. "An automation framework for PACS workflows optimization in shared environments". 2015.
    10.1109/CISTI.2015.7170422
  18. Silva, L.A.B.; Costa, C.; Oliveira, J.L.. "Semantic search over DICOM Repositories". 2014.
    10.1109/ICHI.2014.41
  19. Pinho, E.; Silva, L.B.; Costa, C.. "A cloud service integration platform for web applications". 2014.
    10.1109/HPCSim.2014.6903709
  20. Silva, L.A.B.; Beroud, L.; Costa, C.; Oliveira, J.L.. "Medical imaging archiving: A comparison between several NoSQL solutions". 2014.
    10.1109/BHI.2014.6864305
  21. Silva, L.A.B.; Ribeiro, L.; Costa, C.; Oliveira, J.L.; Santos, M.. "Normalizing medical imaging archives for dose quality assurance and productivity auditing". 2014.
    10.1109/MeMeA.2014.6860112
  22. Silva, L.A.B.; Costa, C.; Oliveira, J.L.. "An agile framework to support distributed medical imaging scenarios". 2013.
    10.1109/ICHI.2013.48
  23. Silva, L.A.B.; Campos, S.; Costa, C.; Oliveira, J.L.. "Integrating echocardiogram reports with medical imaging". 2013.
    10.1109/CBMS.2013.6627819
  24. Silva, L.A.B.; Campos, S.; Costa, C.; Oliveira, J.L.. "Integrating echocardiogram reports with medical imaging". 2013.
  25. Godinho, T.M.; Silva, L.A.B.; Viana-Ferreira, C.; Costa, C.; Oliveira, J.L.. "Enhanced regional network for medical imaging repositories". 2013.
  26. Santos, M.; De Francesco, S.; Silva, L.A.B.; Silva, A.; Costa, C.; Rocha, N.. "Multi vendor DICOM metadata access: A multi site hospital approach using Dicoogle". 2013.
  27. Monteiro, E.J.M.; Silva, L.A.B.; Costa, C.. "CloudMed: Promoting telemedicine processes over the cloud". 2012.
  28. Silva, L.A.B.; Costa, C.; Oliveira, J.L.. "A DICOM relay service supported on cloud resources". 2012.
  29. Campos, S.C.; Costa, C.; Silva, L.A.B.. "A network sensor for medical imaging workflows". 2012.
  30. Bastião Silva, L.A.; Costa, C.; Silva, A.; Oliveira, J.L.. "A PACS gateway to the cloud". 2011.
  31. Ribeiro, L.S.; Bastião, L.; Costa, C.; Oliveira, J.L.. "Email-P2P gateway to distributed medical imaging repositories". 2010.
Journal article
  1. Shibarjun Mandal; Ramya Motganhalli Ravikumar; Astrid Tannert; Annett Urbanek; Rustam R. Guliev; Max Naumann; Sina M. Coldewey; et al. "Qualitative comparison of decalcifiers for mouse bone cryosections for subsequent biophotonic analysis". Scientific Reports (2025): http://dx.doi.org/10.1038/s41598-024-84330-2.
    10.1038/s41598-024-84330-2
  2. Ana Rodrigues; Tiago Almeida; Luís Bastião Silva; Carlos Costa. "Diving Into AutoML in Medical Imaging: Solution for Non-ML Practitioners". IEEE Access (2024): https://doi.org/10.1109/ACCESS.2024.3441469.
    10.1109/ACCESS.2024.3441469
  3. Lebre, R.; Silva, L.B.; Costa, C.. "A Cloud-Ready Architecture for Shared Medical Imaging Repository". Journal of Digital Imaging 33 6 (2020): 1487-1498. http://www.scopus.com/inward/record.url?eid=2-s2.0-85087916517&partnerID=MN8TOARS.
    10.1007/s10278-020-00373-7
  4. Dos Santos, M.R.; Silva, L.B.; Silva, A.; Rocha, N.P.. "DICOM metadata analysis for population studies". International Journal of E-Health and Medical Communications 10 1 (2019): 1-17. http://www.scopus.com/inward/record.url?eid=2-s2.0-85054312269&partnerID=MN8TOARS.
    10.4018/IJEHMC.2019010101
  5. Oliveira, J.L.; Trifan, A.; Bastião Silva, L.A.. "EMIF Catalogue: A collaborative platform for sharing and reusing biomedical data". International Journal of Medical Informatics 126 (2019): 35-45. http://www.scopus.com/inward/record.url?eid=2-s2.0-85063028413&partnerID=MN8TOARS.
    10.1016/j.ijmedinf.2019.02.006
  6. Bastião Silva, L.; Trifan, A.; Luís Oliveira, J.. "MONTRA: An agile architecture for data publishing and discovery". Computer Methods and Programs in Biomedicine 160 (2018): 33-42. http://www.scopus.com/inward/record.url?eid=2-s2.0-85044949656&partnerID=MN8TOARS.
    10.1016/j.cmpb.2018.03.024
  7. Luis Bastiao Silva; Rafael C. Jimenez; Niklas Blomberg; José Luis Oliveira. "General guidelines for biomedical software development". F1000Research 6 (2017): 273-273. https://doi.org/10.12688/f1000research.10750.2.
    10.12688/f1000research.10750.2
  8. Luis Bastiao Silva; Rafael C. Jimenez; Niklas Blomberg; José Luis Oliveira. "General guidelines for biomedical software development [version 1; referees: awaiting peer review]". (2017): https://f1000research.com/articles/6-273/v1.
    10.12688/f1000research.10750.1
  9. Marques Godinho, T.; Lebre, R.; Silva, L.B.; Costa, C.. "An efficient architecture to support digital pathology in standard medical imaging repositories". Journal of Biomedical Informatics 71 (2017): 190-197. http://www.scopus.com/inward/record.url?eid=2-s2.0-85020429778&partnerID=MN8TOARS.
    10.1016/j.jbi.2017.06.009
  10. Godinho, T.M.; Viana-Ferreira, C.; Bastião Silva, L.A.; Costa, C.. "A routing mechanism for cloud outsourcing of medical imaging repositories". IEEE Journal of Biomedical and Health Informatics 20 1 (2016): 367-375. http://www.scopus.com/inward/record.url?eid=2-s2.0-84971592176&partnerID=MN8TOARS.
    10.1109/JBHI.2014.2361633
  11. Valente, F.; Silva, L.A.B.; Godinho, T.M.; Costa, C.. "Anatomy of an Extensible Open Source PACS". Journal of Digital Imaging 29 3 (2016): 284-296. http://www.scopus.com/inward/record.url?eid=2-s2.0-84945156932&partnerID=MN8TOARS.
    10.1007/s10278-015-9834-0
  12. Lopes, P.; Silva, L.B.; Oliveira, J.L.. "Challenges and opportunities for exploring patient-level data". BioMed Research International 2015 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84945400618&partnerID=MN8TOARS.
    10.1155/2015/150435
  13. Silva, L.A.B.; Ribeiro, L.S.; Santos, M.; Neves, N.; Francisco, D.; Costa, C.; Oliveira, J.L.. "Normalizing Heterogeneous Medical Imaging Data to Measure the Impact of Radiation Dose". Journal of Digital Imaging 28 6 (2015): 671-683. http://www.scopus.com/inward/record.url?eid=2-s2.0-84946490879&partnerID=MN8TOARS.
    10.1007/s10278-015-9805-5
  14. Silva, L.A.B.; Pinho, R.; Ribeiro, L.S.; Costa, C.; Oliveira, J.L.. "A centralized platform for geo-distributed PACS management". Journal of Digital Imaging 27 2 (2014): 165-173. http://www.scopus.com/inward/record.url?eid=2-s2.0-84897027876&partnerID=MN8TOARS.
    10.1007/s10278-013-9650-3
  15. Silva, L.A.B.; Campos, S.; Costa, C.; Oliveira, J.L.. "Sensor-based architecture for medical imaging workflow analysis systems-level quality improvement". Journal of Medical Systems 38 8 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84904038647&partnerID=MN8TOARS.
    10.1007/s10916-014-0063-8
  16. Bastião Silva, L.A.; Costa, C.; Oliveira, J.L.. "A common API for delivering services over multi-vendor cloud resources". Journal of Systems and Software 86 9 (2013): 2309-2317. http://www.scopus.com/inward/record.url?eid=2-s2.0-84881477740&partnerID=MN8TOARS.
    10.1016/j.jss.2013.04.037
  17. Silva, L.A.B.; Costa, C.; Oliveira, J.L.. "DICOM relay over the cloud". International Journal of Computer Assisted Radiology and Surgery 8 3 (2013): 323-333. http://www.scopus.com/inward/record.url?eid=2-s2.0-84878019584&partnerID=MN8TOARS.
    10.1007/s11548-012-0785-3
  18. Bastião Silva, L.A.; Costa, C.; Oliveira, J.L.. "A PACS archive architecture supported on cloud services". International Journal of Computer Assisted Radiology and Surgery 7 3 (2012): 349-358. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862979352&partnerID=MN8TOARS.
    10.1007/s11548-011-0625-x
  19. Costa, C.; Ferreira, C.; Bastião, L.; Ribeiro, L.; Silva, A.; Oliveira, J.L.. "Dicoogle - An open source peer-to-peer PACS". Journal of Digital Imaging 24 5 (2011): 848-856. http://www.scopus.com/inward/record.url?eid=2-s2.0-84855567679&partnerID=MN8TOARS.
    10.1007/s10278-010-9347-9
Activities

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2020/03/01 - 2024/09/30 Application of Biophotonics in Bone Infection Research
Co-supervisor
Leibniz-Institut für Photonische Technologien eV, Germany

BMD software, Portugal