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Dr. Sónia Negrão is an Assistant Professor at University College Dublin and the PI of the Crop Stress Interaction group (CSI-Dublin). Her research focuses on plant physiology with the specific aim of improving plant stress tolerance. She is the recipient of the prestigious "SFI President of Ireland Future Research Leaders Award" due to her contributions as emergent leader in crop stress physiology. Dr. Sónia Negrão¿s research expertise covers the areas of plant physiology, abiotic stress tolerance, high-throughput phenotyping, and genomics, and she has always been captivated by the possibility of understanding the genetic mechanisms of abiotic stress tolerance in resilient plant species. Her research vision also integrates temporal resolution of plants adaptation to stress using state-os-the-art plant imaging equipment. Dr. Sónia Negrão graduated in Agronomy, majoring in Crop breeding at Instituto Superior de Agronomia (Lisbon, Portugal). In 2008, she completed her PhD in Biology at ITQB-Nova (Oeiras, Portugal), focusing on breeding Portuguese Heritage rice in collaboration with the International Rice Research Institute (IRRI- Philippines). She then pursued a Post-Doc position at ITQB in collaboration with IRRI targeting rice genomics and allele mining for salinity stress. She worked five years as a research scientist at King Abdullah University of Science and Technology (KAUST) in Saudi Arabia where she contributed to several projects involving the genetic dissection of the mechanisms of salinity tolerance in different species. Her work has enabled elucidation of the genetic basis for resilience using resilient species and underutilised crop resources, thus promoting plant adaptation to changing climates and informing breeding strategies. She has published in high-ranking journals including Nature, Nature Communications, Nature Plants, The Plant Journal and Plant Physiology. Her research is highly impactful, with >3600 citations (h-index 22), and she has developed an extensive list of worldwide collaborators as seen in her publication list. Dr. Sónia Negrão is a lecturer in several undergraduate and graduate modules, and has successfully supervised over 11 Ph.D. students. She is a passionate advocate for Equality, Diversity and Inclusion (EDI), co-chairing the EDI committee and co-leading the Silver Athena SWAN at her department. She is also an active and excellent science communicator, with over 1.1K followers on Twitter, promoting public engagement with science. In Portugal, Dr. Negrão was known to be a science communicator, particularly on GM issues, in school debates and on radio. Her outreach activities also involved activities with a large number of stakeholders, namely farmers, industry partners, and technical staff.
Identification

Personal identification

Full name
Sonia Negrao

Citation names

  • Negrao, Sonia

Author identifiers

Ciência ID
DE12-522B-5F37
ORCID iD
0000-0001-8059-5240

Knowledge fields

  • Natural sciences - Biological Sciences - Biology
  • Agrarian Sciences - Agriculture, Forestry and Fisheries - Agriculture
  • Natural sciences - Biological Sciences - Genetics and Heredity

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Education
Degree Classification
2008
Concluded
Biologia (Doutoramento)
Major in Especialidade: Biologia
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
"Breeding for High Yield and Blast Resistance of Traditional Portuguese Rice Varieties by Marker-assisted Backrossing" (THESIS/DISSERTATION)
Affiliation

Science

Category
Host institution
Employer
2013/05/16 - 2018/05/15 Coordinating Researcher (Research) King Abdullah University of Science and Technology, Saudi Arabia
2008/10/01 - 2013/04/30 Postdoc (Research) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Teaching in Higher Education

Category
Host institution
Employer
2018/07/01 - Current Assistant Professor (University Teacher) University College Dublin, Ireland
Projects

Contract

Designation Funders
2019/10 - 2025/09 Looking into time- how abiotic stress impacts barley production and malting quality
18/FRL/6197
Principal investigator
Science Foundation Ireland
2015/01/01 - 2018/12/31 "Genetic approaches to discover novel components of salinity tolerance in the wild tomato, Solanum pimpinellifolium.”
Award No. 2302-01-01
Project manager
Concluded
2013/01/01 - 2014/12/31 "Exploring rice biodiversity: a genome-wide association (GWAS) study of salt-tolerance."
EXPL/BIA-BIC/0947/2012
Principal investigator
2010/01/01 - 2013/12/31 "Breeding for salinity tolerance in rice and identification of key genes/proteins affecting seed set under salt stress"
PTDC/AGR-AAM/099234/2008
Principal investigator
2008/01/01 - 2011/12 Analysis of the natural variability in Rice (Oryza sativa L.) through EcoTILLING in salt and cold tolerance genes
Post-doc Fellow
Concluded
Outputs

Publications

Conference paper
  1. Johansen, K.; Morton, M.J.L.; Malbeteau, Y.; Aragon, B.; Al-Mashharawi, S.; Ziliani, M.; Angel, Y.; et al. "Predicting biomass and yield at harvest of salt-stressed tomato plants using uav imagery". 2019.
    10.5194/isprs-archives-XLII-2-W13-407-2019
Journal article
  1. Pailles, Y.; Awlia, M.; Julkowska, M.; Passone, L.; Zemmouri, K.; Negrão, S.; Schmöckel, S.M.; Tester, M.. "Diverse traits contribute to salinity tolerance of wild tomato seedlings from the galapagos islands". Plant Physiology 182 1 (2020): 534-546. http://www.scopus.com/inward/record.url?eid=2-s2.0-85077664568&partnerID=MN8TOARS.
    10.1104/pp.19.00700
  2. Gutaker, R.M.; Groen, S.C.; Bellis, E.S.; Choi, J.Y.; Pires, I.S.; Bocinsky, R.K.; Slayton, E.R.; et al. "Genomic history and ecology of the geographic spread of rice". Nature Plants 6 5 (2020): 492-502. http://www.scopus.com/inward/record.url?eid=2-s2.0-85084810881&partnerID=MN8TOARS.
    10.1038/s41477-020-0659-6
  3. Saade, S.; Brien, C.; Pailles, Y.; Berger, B.; Shahid, M.; Russell, J.; Waugh, R.; Negrão, S.; Tester, M.. "Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stages". PLoS ONE 15 7 July (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85088506385&partnerID=MN8TOARS.
    10.1371/journal.pone.0236037
  4. Ward, B.; Brien, C.; Oakey, H.; Pearson, A.; Negrão, S.; Schilling, R.K.; Taylor, J.; et al. "High-throughput 3D modelling to dissect the genetic control of leaf elongation in barley (Hordeum vulgare)". Plant Journal 98 3 (2019): 555-570. http://www.scopus.com/inward/record.url?eid=2-s2.0-85064918295&partnerID=MN8TOARS.
    10.1111/tpj.14225
  5. Johansen, K.; Morton, M.J.L.; Malbeteau, Y.M.; Aragon, B.; Al-Mashharawi, S.K.; Ziliani, M.G.; Angel, Y.; et al. "Unmanned aerial vehicle-based phenotyping using morphometric and spectral analysis can quantify responses of wild tomato plants to salinity stress". Frontiers in Plant Science 10 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85064254261&partnerID=MN8TOARS.
    10.3389/fpls.2019.00370
  6. Morton, M.J.L.; Awlia, M.; Al-Tamimi, N.; Saade, S.; Pailles, Y.; Negrão, S.; Tester, M.. "Salt stress under the scalpel – dissecting the genetics of salt tolerance". Plant Journal 97 1 (2019): 148-163. http://www.scopus.com/inward/record.url?eid=2-s2.0-85059915333&partnerID=MN8TOARS.
    10.1111/tpj.14189
  7. Razali, R.; Bougouffa, S.; Morton, M.J.L.; Lightfoot, D.J.; Alam, I.; Essack, M.; Arold, S.T.; et al. "The genome sequence of the wild tomato solanum pimpinellifolium provides insights into salinity tolerance". Frontiers in Plant Science 9 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85054792004&partnerID=MN8TOARS.
    10.3389/fpls.2018.01402
  8. Batista, Rita; Fonseca, Cátia; Planchon, Sébastien; Negrão, Sónia; Renaut, Jenny; Oliveira, M. Margarida. "O stress ambiental pode provocar mais alterações nas plantas do que a engenharia genética". (2018): http://hdl.handle.net/10400.18/5675.
  9. Batista, R.; Fonseca, C.; Planchon, S.; Negrão, S.; Renaut, J.; Oliveira, M.M.. "Environmental stress is the major cause of transcriptomic and proteomic changes in GM and non-GM plants". Scientific Reports 7 1 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85028928886&partnerID=MN8TOARS.
    10.1038/s41598-017-09646-8
  10. Pailles, Y.; Ho, S.; Pires, I.S.; Tester, M.; Negrão, S.; Schmöcke, S.M.. "Genetic diversity and population structure of two tomato species from the galapagos islands". Frontiers in Plant Science 8 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85012996366&partnerID=MN8TOARS.
    10.3389/fpls.2017.00138
  11. Jarvis, D.E.; Ho, Y.S.; Lightfoot, D.J.; Schmöckel, S.M.; Li, B.; Borm, T.J.A.; Ohyanagi, H.; et al. "The genome of Chenopodium quinoa". Nature 542 7641 (2017): 307-312. http://www.scopus.com/inward/record.url?eid=2-s2.0-85014835664&partnerID=MN8TOARS.
    10.1038/nature21370
  12. Almadanim, M.C.; Alexandre, B.M.; Rosa, M.T.G.; Sapeta, H.; Leitão, A.E.; Ramalho, J.C.; Lam, T.T.; et al. "Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose-phosphate synthase and is required for a proper cold stress response". Plant Cell and Environment 40 7 (2017): 1197-1213. http://www.scopus.com/inward/record.url?eid=2-s2.0-85014192136&partnerID=MN8TOARS.
    10.1111/pce.12916
  13. Salhi, A.; Negrão, S.; Essack, M.; Morton, M.J.L.; Bougouffa, S.; Razali, R.; Radovanovic, A.; et al. "DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species". Scientific Reports 7 1 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85025463406&partnerID=MN8TOARS.
    10.1038/s41598-017-05448-0
  14. Negrão, S.; Schmöckel, S.M.; Tester, M.. "Evaluating physiological responses of plants to salinity stress". Annals of Botany 119 1 (2017): 1-11. http://www.scopus.com/inward/record.url?eid=2-s2.0-85014819317&partnerID=MN8TOARS.
    10.1093/aob/mcw191
  15. Batista, Rita; Fonseca, C.; Planchon, Sébastien; Negrão, Sónia; Renaut, Jenny; Oliveira, Margarida. "Environmental stress is the major cause of transcriptomic and proteomic changes in GM and non-GM plants". (2017): http://hdl.handle.net/10400.18/4793.
    10.1038/s41598-017-09646-8
  16. Al-Tamimi, N.; Brien, C.; Oakey, H.; Berger, B.; Saade, S.; Ho, Y.S.; Schmöckel, S.M.; Tester, M.; Negraõ, S.. "Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping". Nature Communications 7 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84995642413&partnerID=MN8TOARS.
    10.1038/ncomms13342
  17. Awlia, M.; Nigro, A.; Fajkus, J.; Schmoeckel, S.M.; Negrão, S.; Santelia, D.; Trtílek, M.; et al. "High-throughput non-destructive phenotyping of traits that contribute to salinity tolerance in Arabidopsis thaliana". Frontiers in Plant Science 7 September2 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84989930263&partnerID=MN8TOARS.
    10.3389/fpls.2016.01414
  18. Saade, S.; Maurer, A.; Shahid, M.; Oakey, H.; Schmöckel, S.M.; Negraõ, S.; Pillen, K.; Tester, M.. "Yield-related salinity tolerance traits identified in a nested association mapping (NAM) population of wild barley". Scientific Reports 6 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84986220611&partnerID=MN8TOARS.
    10.1038/srep32586
  19. Pires, I.S.; Negrão, S.; Oliveira, M.M.; Purugganan, M.D.. "Comprehensive phenotypic analysis of rice (Oryza sativa) response to salinity stress". Physiologia Plantarum 155 1 (2015): 43-54. http://www.scopus.com/inward/record.url?eid=2-s2.0-84939254853&partnerID=MN8TOARS.
    10.1111/ppl.12356
  20. Roy, S.J.; Negrão, S.; Tester, M.. "Salt resistant crop plants". Current Opinion in Biotechnology 26 (2014): 115-124. http://www.scopus.com/inward/record.url?eid=2-s2.0-84891811012&partnerID=MN8TOARS.
    10.1016/j.copbio.2013.12.004
  21. Negrão, S.; Cecília Almadanim, M.; Pires, I.S.; Abreu, I.A.; Maroco, J.; Courtois, B.; Gregorio, G.B.; Mcnally, K.L.; Margarida Oliveira, M.. "New allelic variants found in key rice salt-tolerance genes: An association study". Plant Biotechnology Journal 11 1 (2013): 87-100. http://www.scopus.com/inward/record.url?eid=2-s2.0-84871708986&partnerID=MN8TOARS.
    10.1111/pbi.12010
  22. Pires, I.S.; Negrão, S.; Pentony, M.M.; Abreu, I.A.; Oliveira, M.M.; Purugganan, M.D.. "Different evolutionary histories of two cation/proton exchanger gene families in plants". BMC Plant Biology 13 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84879823132&partnerID=MN8TOARS.
    10.1186/1471-2229-13-97
  23. Abreu, I.A.; Farinha, A.P.; Negrão, S.; Gonçalves, N.; Fonseca, C.; Rodrigues, M.; Batista, R.; Saibo, N.J.M.; Oliveira, M.M.. "Coping with abiotic stress: Proteome changes for crop improvement". Journal of Proteomics 93 (2013): 145-168. http://www.scopus.com/inward/record.url?eid=2-s2.0-84888030942&partnerID=MN8TOARS.
    10.1016/j.jprot.2013.07.014
  24. Abreu, Isabel A.; Farinha, Ana Paula; Negrão, Sónia; Gonçalves, Nuno; Fonseca, Cátia; Rodrigues, Mafalda; Batista, Rita; Saibo, Nelson; Oliveira, M. Margarida. "Coping with abiotic stress: Proteome changes for crop improvement". (2013): http://hdl.handle.net/10400.18/1880.
    10.1016/j.jprot.2013.07.014
  25. Negrao, Sonia; Almadanim, Maria Cecilia; Pires, Inês S.; Abreu, Isabel A.; Maroco, João Paulo; COURTOIS, Brigitte; Gregorio, Glenn B.; McNally, Kenneth; Oliveira, Maria Margarida. "New allelic variants found in key rice salt-tolerance genes an association study". (2013): http://hdl.handle.net/10400.12/2360.
    10.1111/pbi.12010
  26. Courtois, B.; Frouin, J.; Greco, R.; Bruschi, G.; Droc, G.; Hamelin, C.; Ruiz, M.; et al. "Genetic diversity and population structure in a European Collection of rice". Crop Science 52 4 (2012): 1663-1675. http://www.scopus.com/inward/record.url?eid=2-s2.0-84863567508&partnerID=MN8TOARS.
    10.2135/cropsci2011.11.0588
  27. Negrão, S.; Almadanim, C.; Pires, I.; McNally, K.L.; Oliveira, M.M.. "Use of EcoTILLING to identify natural allelic variants of rice candidate genes involved in salinity tolerance". Plant Genetic Resources: Characterisation and Utilisation 9 2 (2011): 300-304. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960137481&partnerID=MN8TOARS.
    10.1017/S1479262111000566
  28. Negrão, S.; Courtois, B.; Ahmadi, N.; Abreu, I.; Saibo, N.; Oliveira, M.M.. "Recent updates on salinity stress in rice: From physiological to molecular responses". Critical Reviews in Plant Sciences 30 4 (2011): 329-377. http://www.scopus.com/inward/record.url?eid=2-s2.0-79961060267&partnerID=MN8TOARS.
    10.1080/07352689.2011.587725
  29. Courtois, B.; Greco, R.; Bruschi, G.; Frouin, J.; Ahmadi, N.; Droc, G.; Hamelin, C.; et al. "Molecular characterization of the European rice collection in view of association mapping". Plant Genetic Resources: Characterisation and Utilisation 9 2 (2011): 233-235. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960148940&partnerID=MN8TOARS.
    10.1017/S147926211100027X
  30. Ahmadi, N.; Negrão, S.; Katsantonis, D.; Frouin, J.; Ploux, J.; Letourmy, P.; Droc, G.; et al. "Targeted association analysis identified japonica rice varieties achieving Na +/K + homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra". Theoretical and Applied Genetics 123 6 (2011): 881-895. http://www.scopus.com/inward/record.url?eid=2-s2.0-84857071797&partnerID=MN8TOARS.
    10.1007/s00122-011-1634-4
  31. Negrão, S.; Palaniappan, J.; Maroco, J.; Lourenço, T.; Mackill, D.; Oliveira, M.M.. "Bridging sd1 molecular knowledge with recent breeding strategies for the improvement of traditional rice varieties - A Japonica case-study". African Journal of Biotechnology 9 15 (2010): 2192-2200. http://www.scopus.com/inward/record.url?eid=2-s2.0-77951243093&partnerID=MN8TOARS.
  32. Negrão, Sónia; Palaniappan, Jayamani; Maroco, João; Lourenço, Tiago; Mackill, David; Oliveira, Maria Margarida. "Bridging sd1 molecular knowledge with recent breeding strategies for the improvement of traditional rice varieties - a japonica case-study". (2010): http://hdl.handle.net/10400.12/1688.
  33. Negrão, S.; Oliveira, M.M.; Jena, K.K.; Mackill, D.. "Integration of genomic tools to assist breeding in the japonica subspecies of rice". Molecular Breeding 22 2 (2008): 159-168. http://www.scopus.com/inward/record.url?eid=2-s2.0-48349142806&partnerID=MN8TOARS.
    10.1007/s11032-008-9177-3
  34. Jayamani, P.; Negrão, S.; Martins, M.; Maçãs, B.; Oliveira, M.M.. "Genetic relatedness of Portuguese rice accessions from diverse origins as assessed by microsatellite markers". Crop Science 47 2 (2007): 879-886. http://www.scopus.com/inward/record.url?eid=2-s2.0-34247205885&partnerID=MN8TOARS.
    10.2135/cropsci2006.04.0236
  35. Jayamani, P.; Negrão, S.; Brites, C.; Oliveira, M.M.. "Potential of Waxy gene microsatellite and single-nucleotide polymorphisms to develop japonica varieties with desired amylose levels in rice (Oryza sativa L.)". Journal of Cereal Science 46 2 (2007): 178-186. http://www.scopus.com/inward/record.url?eid=2-s2.0-34547603969&partnerID=MN8TOARS.
    10.1016/j.jcs.2007.03.003
Thesis / Dissertation
  1. Pina, Maria Cecília Marques dos Santos Mousinho Almadanim da Câmara. "Os CPK17". PhD, 2017. http://hdl.handle.net/10362/77052.