MÁRIO GIL POIARES RODRIGUES DE OLIVEIRA (D019-5596-42E2)

Curriculum Vitae

MÁRIO GIL POIARES RODRIGUES DE OLIVEIRA

Biologist and researcher in the field of Systems Biology. Holds a Bachelor of Science degree in Biology (branch of Molecular Biology and Genetics, with a minor in Informatics) from the Faculty of Sciences of the University of Lisbon and a Master of Science degree in Biotechnology from the NOVA School of Science and Technology of NOVA University Lisbon. His scientific interests concern the usage of molecular and computational tools in the modelling of complex biological systems and the study of their relation with human health and heredity. Has research experience in the field of epigenetics and gene regulation, and metabolomics, and has collaborated with the private sector in the improvement of vaccine production through biochemical modelling and deep learning techniques.

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Identification

Personal identification

Full name: MÁRIO GIL POIARES RODRIGUES DE OLIVEIRA

Citation names

Gil P. Oliveira
Mário Gil Poiares Rodrigues de Oliveira
Poiares-Oliveira, Gil

Author identifiers

Ciência ID: D019-5596-42E2
ORCID iD: 0000-0003-4638-2879
AuthenticusID: R-00K-EQM
Google Scholar ID: IvGHLzkAAAAJ
Researcher Id: AAE-9440-2021
Scopus Author Id: 57932405100

Email addresses

gil.oliveira@tecnico.ulisboa.pt (Professional)

Telephones

Telephone

(+351) 213100300 Ext.: 2318 (Professional)

Addresses

Room 401, INESC-ID, Rua Alves Redol, 9, 1000-029, Lisboa, Lisboa, Portugal (Professional)

Websites

https://fenix.tecnico.ulisboa.pt/homepage/ist429711 (Professional)
https://www.inesc-id.pt/member/28080/ (Professional)

Knowledge fields

Natural sciences - Biological Sciences - Molecular Biology
Natural sciences - Biological Sciences - Genetics and Heredity
Engineering and Technology - Industrial Biotechnology
Medical and Health Sciences - Medical Biotechnology
Exact Sciences - Computer and Information Sciences - Bioinformatics
Medical and Health Sciences - Medical Biotechnology - Gene-based Diagnostics and Therapeutic Interventions
Medical and Health Sciences - Basic Medicine - Human Genetics
Medical and Health Sciences - Medical Biotechnology - Technologies Involving the Manipulation of Cells, Tissues, Organs or the Whole Organism

Languages

Language	Speaking	Reading	Writing	Listening	Peer-review
Portuguese (Mother tongue)
English	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)
Spanish; Castilian	Intermediate (B1)	Intermediate (B1)	Intermediate (B1)	Intermediate (B1)	Intermediate (B1)
French	Beginner (A1)	Beginner (A1)	Beginner (A1)	Beginner (A1)	Beginner (A1)

Education

	Degree	Classification
2019/09 - 2022/06/28 Concluded	Biotecnologia (Mestrado) Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal "Development of a novel hybrid genome-scale modelling method and showcase with HEK293 cell cultures" (THESIS/DISSERTATION)	16
2016/09 - 2019/06/21 Concluded	Biologia (Licenciatura) Major in Biologia Molecular e Genética com Minor em Informática Universidade de Lisboa Faculdade de Ciências, Portugal	14

Affiliation

Science

	Category Host institution	Employer
2022/09/07 - 2023/03/31	Research Trainee (Research)	Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal
	Universidade de Lisboa Faculdade de Ciências, Portugal
2021/01 - 2022/07/31	Researcher (Research)	Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
	Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal
2020/08/25 - 2020/12	Research Trainee (Research)	Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
	Universidade de Lisboa Faculdade de Medicina, Portugal

Other Careers

	Category Host institution	Employer
2023/06/05 - Current	Técnico Superior (Técnico Superior)	Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
	Universidade de Lisboa Instituto Superior Técnico, Portugal (...)

Positions / Appointments

	Category Host institution	Employer
2024/03 - Current	Membro do Conselho Editorial - RDMkit	Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
	ELIXIR, United Kingdom (...)
2023 - Current	Vice-Coordenador de Nó (ELIXIR Portugal)	Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
	BioData.pt, Portugal (...)

Others

	Category Host institution	Employer
2017 - 2018/01	Membro do Departamento de Gestão de Projetos - Ciências da Vida	Júnior Empresa Ciências, Portugal

Projects

Grant

	Designation	Funders
2021/10/01 - 2022/03/31	SILICOMEDIA - In silico culture or feed media design based on prior metabolic knowledge: Application to the Production phase of a mammalian cell line LAQV/BI/006/2021 Research Fellow Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal Universidade Nova de Lisboa Departamento de Química, Portugal	GlaxoSmithKline Biologicals SA Concluded

Contract

	Designation	Funders
2024/02/01 - Current	ELIXIR-STEERS 101131096 Researcher BioData.pt, Portugal	European Commission Ongoing
2024/01/01 - Current	ELIXIR Training Platform (24-TECH-Training) 2024-TECH-Training Researcher BioData.pt, Portugal	ELIXIR Ongoing
2024/01/01 - Current	DATAREX - Data Management for Research in ELIXIR 2023-COMM-DATAREX Researcher BioData.pt, Portugal	ELIXIR Ongoing
2024/01 - Current	Building bridges to foster the ambition to reach the frontiers of science with global significance and impact: collaboration between the Office of Data Science Strategy (ODSS) at the US National Institutes of Health (NIH) and ELIXIR ELIXIR Staff Exchange NIH/ODSS Researcher BioData.pt, Portugal	ELIXIR Ongoing
2023/12 - Current	MALDIBANK - Multi-domain Open MALDI Spectra Archive for Identification of Microorganisms 101188201 Researcher BioData.pt, Portugal	European Commission Submitted
2023/12 - Current	ELIXIR Train-The-Trainer CoS 2024-PEOPLE-TtT Researcher BioData.pt, Portugal	ELIXIR Under evaluation

Outputs

Publications

Conference poster	Estima, Cláudia; Marques, Madalena; Gil Poiares-Oliveira; Ana Espada de Sousa; Gama-Carvalho, Margarida. Corresponding author: Estima, Cláudia. "Dissecting the role of miR-34c-5p in Human CD4+ T cells". Paper presented in XLVIII Annual Meeting of the Portuguese Society for Immunology, 2023. Estima, Cláudia; Marques, Madalena; Gil Poiares-Oliveira; B. Farias, Guilherme; Ana E Sousa; Gama-Carvalho, Margarida. Corresponding author: Estima, Cláudia. "The impact of miR-34c-5p on the transcriptome of Human CD4+ T cells". Paper presented in RNA in Disease - IX ptRNA Meeting, 2023.
Journal article	Ramos, João R. C.; Pinto, José; Gil Poiares-Oliveira; Peeters, Ludovic; Dumas, Patrick; Oliveira, Rui. Corresponding author: Oliveira, Rui. "Deep hybrid modeling of a HEK293 process: Combining long short-term memory networks with first principles equations". Biotechnology and Bioengineering (2024): http://dx.doi.org/10.1002/bit.28668. Open access • Published • 10.1002/bit.28668 Ramos, João R. C.; Gil P. Oliveira; Dumas, Patrick; Oliveira, Rui. "Genome-scale modeling of Chinese hamster ovary cells by hybrid semi-parametric flux balance analysis". Bioprocess and Biosystems Engineering (2022): http://dx.doi.org/10.1007/s00449-022-02795-9. 10.1007/s00449-022-02795-9
Online resource	ELIXIR. Research Data Management Kit. A deliverable from the EU-funded ELIXIR-CONVERGE project (grant agreement 871075).. 2021. https://rdmkit.elixir-europe.org.
Thesis / Dissertation	"Development of a HEK293 Cell-line Digital Twin Based on Hybrid Semi-Parametric Modeling at the Genome-Scale". Master, Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, 2022. https://hdl.handle.net/10362/142477.

Activities

Oral presentation

	Presentation title	Event name Host (Event location)
2022/09/13	Development of a HEK293 Cell-line Digital Twin Based on Hybrid Semi-Parametric Modeling at the Genome-Scale	GSK Vaccines Staff Meeting GlaxoSmithKline Biologicals SA (Rixensart, Belgium)
2022/02	Development of a HEK293 Cell-line Digital Twin Based on Hybrid Semi-Parametric Modeling at the Genome-Scale	Jornadas de Investigação do DQ e DCV Departamentos de Química e Ciências da Vida da NOVA School of Science and Technology (Caparica, Portugal)

Event organisation

	Event name Type of event (Role)	Institution / Organization
2023/09/01 - 2023/12/27	Membro da Comissão Organizadora do 2nd Microbiome PT Summit (2023/10/26 - 2023/10/27) Symposium (Member of the Organising Committee)	BioData.pt, Portugal

Association member

	Society Organization name	Role
2017 - 2019/06	AEFCL - Associação dos Estudantes da Faculdade de Ciências de Lisboa	Membro da Direção

Committee member

	Activity description Role	Institution / Organization
2019 - 2020	Membro Suplente - Comissão Pedagógica da Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa Other	Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2016 - 2019/09	Conselho Pedagógico da Licenciatura em Biologia - Departamentos de Biologia Animal e Biologia Vegetal da Faculdade de Ciências da Universidade de Lisboa Member	Universidade de Lisboa Faculdade de Ciências, Portugal
2016/09 - 2019/06	Comissão de Curso da Licenciatura em Biologia da Faculdade de Ciências da Universidade de Lisboa Member	Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2019	Membro do Conselho de Escola - Faculdade de Ciências da Universidade de Lisboa Member	Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2019	Comissão ad-hoc de Boas Práticas Pedagógicas - Faculdade de Ciências da Universidade de Lisboa Member	Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2018	Membro do Conselho Pedagógico - Faculdade de Ciências da Universidade de Lisboa Member	Universidade de Lisboa Faculdade de Ciências, Portugal

Course / Discipline taught

	Academic session	Degree Subject (Type)	Institution / Organization
2024/03/16 - 2024/03/16	Computational Tools and Resources for the Life Sciences - Workshop	(Outros)	Universidade do Minho Escola de Engenharia, Portugal
2024/02/24 - 2024/02/24	Computational Tools and Resources for Biomedicine - Workshop	(Outros)	Universidade de Lisboa Faculdade de Ciências, Portugal
2024/01/29 - 2024/01/30	Ready for BioData Management? Intensive Course at CCMAR		BioData.pt, Portugal Centro de Ciências do Mar, Portugal

Distinctions

Other distinction

2019	Membro Graduado da Ordem dos Biólogos Ordem dos Biólogos, Portugal