Paulo Célio ALVES (C512-E829-71E5)

Curriculum Vitae

Paulo Célio ALVES

Associate Professor with habilitation at University of Porto, Affiliate Professor at University of Montana, Affiliate Curator at the Cornell Museum of Vertebrate/University of Cornell, Director of EBM - Biological Station of Mértola, and President of "Centro de Ciencia Viva de Vila do Conde - Life Science of Vila do Conde". Head of Conservation Genetics and Wildlife Management research group, at CIBIO/InBIO - BIOPOLIS University of Porto. Director of the PhD program in Biodiversity, Genetics and Evolution (BIODIV), member of Scientific Board of the Master in Biodiversity, Genetic and Evolution (MBGE), Faculty of Sciences, University of Porto. Member of the General Council (Conselho Geral) of the University of Porto, Member of the Scientific Commission of the Faculty of Sciences. His main research field is conservation genetics, ecology and wildlife management, in particular lagomorphs (rabbits and hares), small mammals and carnivores. Recent research projects focus on developing and using genetic non-invasive sampling for studying rare or elusive animals (e.g. carnivores, small mammals) and environmental DNA for biodiversity monitoring, study of population dynamics and ecology of managed and threatened species, and ONE HEALTH. Author of over 240 scientific publications, including books, book chapters, papers in peer-reviewed journals (SCI), and outreach. Associate editor of the European Journal of Wildlife Research, Member of the Lagomorph Specialist Group from UICN and President of the WLS - World Lagomorph Society. http://cibio.up.pt/people/details/pcalves https://www.researchgate.net/profile/Paulo_Alves9

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Identification

Personal identification

Full name: Paulo Célio ALVES

Citation names

ALVES, Paulo C

Author identifiers

Ciência ID: C512-E829-71E5
ORCID iD: 0000-0003-4797-0939
Google Scholar ID: https://scholar.google.pt/citations?hl=pt-PT&user=g2xJWOwAAAAJ&view_op=list_works&gmla=AJsN-F58vO_2z4A_pZlc8GcGDdxBMq1Zk_nB7619SP55Y-xvaEFAHC20fjfW8MjmwWC_OwQ1f9hyIPXyPTihXIQiaN174hpNCAWVfQY6EgXQUmbVQkDu9c_rtDH1MdggulMpOnf0HOFOm9ONBSe10qXF5d7hwB6fng
Researcher Id: B-5448-2009
Scopus Author Id: 35577733000

Websites

http://cibio.up.pt/main.php?content=members&id=pcalves&type=board and http://www.researcherid.com/rid/B-5448-2009 (Professional)

Knowledge fields

Natural sciences - Biological Sciences - Zoology

Languages

Language	Speaking	Reading	Writing	Listening
English	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)
French	Intermediate (B1)	Intermediate (B1)	Beginner (A1)	Intermediate (B1)
Spanish; Castilian	Intermediate (B1)	Intermediate (B1)	Intermediate (B1)	Intermediate (B1)

Education

	Degree	Classification
2014 Concluded	Habilitation in Biology (Graduado) Universidade do Porto Faculdade de Ciências, Portugal	Approved by Unanimity
2002/07/08 Concluded	Biology (Doctor of Philosophy) Universidade do Porto Faculdade de Ciências, Portugal "Genetic and reproductive biology characterization of the Iberian hare (Lepus granatensis). Phylogeographic characterization, population differentiation abe annual breeding cycle " (THESIS/DISSERTATION)	Approved with Praise by Unanimity
2002 Concluded	Biologia (Doutoramento) Major in Sem especialidade Universidade do Porto Faculdade de Ciências, Portugal "Caracterização Genética e Biologia Reprodutiva da Lebre Ibérica, Lepus Granatensis. Análise Filogenética, Diferenciação Populacional e Ciclo Anual de Reprodução" (THESIS/DISSERTATION)
1994 Concluded	Applied Ecology (Master) Universidade do Porto Faculdade de Ciências, Portugal "Estudo da reprodução e do estado de condição física de duas populações portuguesas de coelho-bravo, Oryctolagus cuniculus" (THESIS/DISSERTATION)	Very Good
1989 Concluded	Biology - Zoology (Bachelor) Universidade do Porto Faculdade de Ciências, Portugal	15 (in 20)

Affiliation

Science

	Category Host institution	Employer
2006 - Current	Principal Investigator (Research)	Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal

Teaching in Higher Education

	Category Host institution	Employer
2012/04/12 - Current	Associate Professor (University Teacher)	Universidade do Porto, Faculdade de Ciências, Portugal

2002 - 2012	Assistant Professor (University Teacher)	Universidade do Porto, Faculdade de Ciências, Portugal

1994/12/14 - 2002/07/08	Assistant (University Teacher)	Universidade do Porto, Faculdade de Ciências, Portugal

1990/10/01 - 1994/12/14	Trainee Assistant (University Teacher)	Universidade do Porto, Faculdade de Ciências, Portugal

1990/04/01 - 1990/10/01	Tutor (University Teacher)	Universidade do Porto, Faculdade de Ciências, Portugal

Positions / Appointments

	Category Host institution	Employer
2018 - Current	Member of Conselho Scientific Council of Faculty of Sciences	Universidade do Porto, Portugal

2020 - 2023/12	Member of the Senate of University of Porto	Universidade do Porto, Portugal

2014 - 2019	Member of the Direction board of Faculty of Sciences, University Porto	Universidade do Porto, Faculdade de Ciências, Portugal

Others

	Category Host institution	Employer
2018/04 - Current	Affiliate Curator	CORNELL MUSEUM OF VERTEBRATES, United States
	CORNELL MUSEUM OF VERTEBRATES, United States
2013/06/01 - Current	Affiliate Professor	University of Montana College of Forestry and Conservation, United States

Projects

Grant

	Designation	Funders
2023/03/01 - 2025/12/31	Application of genomic science to understand and monitor changes in biodiversity - Biodiversity Genomics Europe - BGE 101059492 Researcher CIBIO/InBIO Associate Lab, University of Porto, Portugal Associação BIOPOLIS - Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal	Horizon 2020
2017 - 2017	Museum National d’Histoire Naturelle, Paris FR-TAF-5915 Principal investigator	EU, Synthesys grant Concluded
2016 - 2016	Royal Belgian Institute of Natural Sciences (RBINS), and Royal Museum of Central Africa (RMCA), Brussels BE-TAF-5010 BE-TAF-5010 Principal investigator	EU, Synthesys grant Concluded
2015 - 2015	Museum für Naturkunde (MfN), Berlin. Synthesys grant, DE-TAF-4131. DE-TAF-4131 Principal investigator	EU, Synthesys grant Ongoing
2011 - 2014	The adaptive value of seasonal coat color change in response to global warming FLAD-NSF Principal investigator	Fundação Luso-Americana Concluded
2006 - 2008	Development of new Molecular and Computational tools for Biodiversity Conservation and Wildlife Management FLAD-NSF Principal investigator	Fundação Luso-Americana Concluded
2006 - 2008	Determination of the origin f the Northern African lagomorphs using a phylogenetic and phylogeographic approach GRICES-CNRST GRICES-CNRST Principal investigator	Fundação para a Ciência e a Tecnologia Concluded
2003 - 2003	Assessing the phylogeographic patterns of the Iberian hare, L. granatensis Bilateral agreement Portugal-Austria Principal investigator Fundação para a Ciência e a Tecnologia, Portugal	Concluded
2001 - 2002	Comparative population genetics study of the European hares (L. europaeus, L. timidus, L. granatensis e L. corsicanus Bilateral agreement Portugal-Austria Principal investigator	Concluded

Contract

	Designation	Funders
2021/01/01 - 2025/12/31	Research Network in Biodiversity and Evolutionary Biology (InBIO) LA/P/0048/2020 10.54499/LA/P/0048/2020 Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Fundação Gaspar Frutuoso, Portugal Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2021/01/01 - 2025/12/31	Research Network in Biodiversity and Evolutionary Biology (InBIO) LA/P/0048/2020 10.54499/LA/P/0048/2020 Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Fundação Gaspar Frutuoso, Portugal Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2022/01/01 - 2024/12/31	MULTI-CRASH: Multi-dimensional ecological cascades triggered by an invasive species in pristine habitats PTDC/CTA-AMB/0510/2021 Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal Universidade do Minho, Portugal Instituto Politécnico de Bragança, Portugal Universidade de Trás-os-Montes e Alto Douro, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2023/03/01 - 2024/08/31	BAGA-PT: BAGAza in PorTugal - epidemiological assessment of emergent flavivirus at environment-wildlife-livestock-human interface 2022.09263.PTDC 10.54499/2022.09263.PTDC Instituto de Investigación en Recursos Cinegéticos, Spain	Fundação para a Ciência e a Tecnologia Ongoing
2021/03/15 - 2024/03/14	HybridChange – The potential of hybridization to promote rapid adaptation during climate change PTDC/BIA-EVL/1307/2020 Researcher Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2020/01/01 - 2023/12/31	Research Network in Biodiversity and Evolutionary Biology UIDB/50027/2020 10.54499/UIDB/50027/2020 Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Fundação Gaspar Frutuoso, Portugal Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2020/01/01 - 2023/12/31	Research Network in Biodiversity and Evolutionary Biology UIDP/50027/2020 10.54499/UIDP/50027/2020 Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Fundação Gaspar Frutuoso, Portugal Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2022/01/17 - 2023/07/16	WildLivesTB - The Wildlife-Livestock interface of bovine TuBerculosis: quantifying the role of each species in disease transmission in multi-host communities EXPL/CVT-CVT/1525/2021 Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Instituto de Investigación en Recursos Cinegéticos, Spain Universidade do Minho, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2022/01/01 - 2023/06/30	Big and small – How do we fit all? An integrative framework for investigating character displacement EXPL/BIA-EVL/0470/2021 Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Instituto de Productos Naturales y Agrobiología, Spain	Fundação para a Ciência e a Tecnologia Ongoing
2019/11/01 - 2021/07/31	Confirmação Genética para o preenchimento de lacunas de Informação. Revisão do Livro Vermelho dos Mamíferos de Portugal Continental e contributo para a avaliação do seu estado de conservação. POSEUR-03-2215-FC-000097 Principal investigator Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências Ongoing
2018/07/01 - 2021/06/30	AGRIVOLE- The role of voles in agroecosystems: linking pest management to biodiversity conservation under environmental change PTDC/BIA-ECO/31728/2017 Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2018/05 - 2021/05/31	2CHANGE – To Change or not to Change? The genetic basis and evolution of seasonal coat colour polymorphism PTDC/BIA-EVL/28124/2017; POCI-01-0145-FEDER-028124 PTDC/BIA-EVL/28124/2017 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Universidade do Algarve Faculdade de Ciências e Tecnologia Fundação para a Ciência e a Tecnologia Ongoing
2015/06/01 - 2020/07/31	EnvMetaGen - Capacity Building at InBIO for Research and Innovation Using Environmental Metagenomics. H2020-WIDESPREAD-2014-2 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Ongoing
2018/11/01 - 2020/06/30	+Coelho 2: Desenvolvimento e implementação de medidas práticas impulsionadoras da recuperação dos leporídeos silvestres em Portugal / + Rabbit, Development and implementation of practical measures to promote the recovery of wild leporids in Portugal Fundo Florestal Permanente Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundo Florestal Permanente, ICNF Ongoing
2016 - 2020	Next-generation biomonitoring: freshwater bioassessment and species conservation improved with metagenomics. PTDC/AAG-MAA/2261/2014 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2019/01/01 - 2019/12/31	Research Network in Biodiversity and Evolutionary Biology UID/BIA/50027/2019 Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Fundação Gaspar Frutuoso, Portugal Universidade do Minho Laboratório de Paisagens Património e Território, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2019/01/01 - 2019/12/31	Rede de Investigação em Biodiversidade e Biologia Evolutiva UID/BIA/50027/2019 Universidade de Lisboa Instituto Superior de Agronomia, Portugal Fundação Gaspar Frutuoso, Portugal Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Universidade do Minho Laboratório de Paisagens Património e Território, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2016/07/11 - 2019/10/11	‘MateFrag’ – Impacts of habitat fragmentation on social and mating systems: testing ecological predictions for a monogamous vole through non-invasive genetics PTDC/BIA-BIC/6582/2014 Universidade de Évora, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2016 - 2019	CHANGE - Seasonal Coat Colour and the impact of Climate Change on the genetic composition of boreal species PTDC/BIA-EVF/1624/2014 Researcher Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2015 - 2017	Iberlince - Recovering the historic distribution range of the Iberian lynx (Lynx pardinus) in Spain and Portugal”, contract on the scope of LIFE10 NAT/ES/000570/IBERLINCE Services, ICNF Principal investigator Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Instituto de Conservação da Natureza e das Florestas, ICNF Concluded
2013/05 - 2016/05	HybridAdapt - Hybridization, adaptation and historical demography: a population genomics study 127522 Provided by PTCRIS: 127522 FCT-ANR/BIA-EVF/0250/2012 Principal investigator Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2014/10/01 - 2016/02/29	SOS COELHO: Bases para a recuperação de uma espécie chave nos ecossistemas Ibéricos; SOS Rabbit: Recouvering wild rabbit populations in Portugal Fundo para a Conservação da Natureza e da Biodiversidade Principal investigator Fundo para a Conservação da Natureza e da Biodiversidade. ICNF, Portugal	Concluded
2013/07 - 2015/09	NETPERSIST. NETwork analysis of critical connectivity thresholds for metapopulation PERSISTence in complex agricultural landscapes grant.Provided by PTCRIS: 129435 129435 Provided by PTCRIS: 129435 PTDC/AAG-MAA/3227/2012 Researcher Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal Universidade de Évora, Portugal Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal	Stichting Weten Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2014/03 - 2015/02	ECOMITO - Unraveling the ecological impact of mitochondrial introgression 134107 Provided by PTCRIS: 134107 EXPL/AAG-MAA/1082/2013 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal Universidade dos Açores Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2011/04/01 - 2014/09/30	Assessing the impact of adaptation and species range shifts during glacial cycles on mitochondrial DNA introgression PTDC/BIA-EVF/111931/2009 Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2011/04 - 2014/09	CRYPSIS - Genetic determination and evolution of seasonal phenotype variation of coat-colour in boreal species 115069 Provided by PTCRIS: 115069 grant.Provided by PTCRIS: 115069 PTDC/BIA-EVF/115069/2009 Principal investigator Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2011/07 - 2014/06	SABOR FRAGMENTATION EXPERIMENT: UNDERTANDING LONG-TERM ECOLOGICAL CONSEQUENCES OF INFRASTRUCTURE DEVELOPMENT AND COMPENSATORY MITIGATION (SABOR-LTER) Provided by PTCRIS: 109443 109443 LTER/BIA-BEC/0004/2009 BIA-BEC/0004/2009 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal Universidade dos Açores Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2010/06/01 - 2013/11/30	Host-pathogen interaction: the Rabbit Haemorrhagic Disease (RHD) and the European Brown Hare Syndrome (EBHS) PTDC/CVT/108490/2008 Provided by PTCRIS: 108490 108490 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal Universidade dos Açores Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal	Fundação para a Ciência e a Tecnologia Fundação para a Ciência e a Tecnologia, I.P. Concluded
2010/05 - 2013/06	PERSIST - The role of matrix permeability for metapopulation PERSISTence in complex agricultural landscapes. The cases of Cabrera (Microtus cabrerae) and southern water voles (Arvicola sapidus). Provided by PTCRIS: 105110 105110 PTDC/BIA-BEC/105110/2008 Researcher Universidade de Évora, Portugal Universidade de Évora Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Portugal Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2010/06 - 2013/03	Urban Green Structure: Study of the relation between public space morphology and flora and fauna diversity in the city of Porto. Provided by PTCRIS: 104044 104044 PTDC/AUR-URB/104044/2008 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2011/01/01 - 2012/12/31	Strategic Project - UI 609 - 2011-2012 PEst-C/BIA/UI0609/2011 Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2008/06 - 2011/12	Evaluating the importance of the X-chromosome "large effect" in the initial stages of reproductive isolation between two pairs of divergent lagomorph taxa Provided by PTCRIS: 72277 72277 PTDC/BIA-BDE/72277/2006 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2007/12/01 - 2011/11/30	Rabbit Haemorrhagic Disease (RHD): Molecular Biology of Resistance and Transmission of Calicivirus. PTDC/CVT/66656/2006 Provided by PTCRIS: 66656 66656 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia Fundação para a Ciência e a Tecnologia, I.P. Concluded
2008/03 - 2011/05	Gene flow across the pillars of Hercules: the role of North Africa in the postglacial recolonization of Europe 74349 Provided by PTCRIS: 74349 PTDC/BIA-BDE/74349/2006 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal Universidade dos Açores Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2007/10/01 - 2011/01/31	Identifying highly diagnostic molecular markers from domestication genes to efficiently detect hybrids between wof/dog and wild/domestic cat PTDC/CVT/71683/2006 71683 Provided by PTCRIS: 71683 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia Fundação para a Ciência e a Tecnologia, I.P. Concluded
2005/09 - 2008/06	Interspecific mtDNA transfer, selection and adaptation to cold in hares Provided by PTCRIS: 58817 58817 POCI/BIA-BDE/58817/2004 Provided by PTCRIS: 82948 82948 Principal investigator Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal CIBIO/InBIO Associate Lab, University of Porto, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2005/07/01 - 2007/12/31	Deciphering the mechanisms of rabbit genetic resistance to myxomatosis and rabbit haemorrhagic viral disease POCI/BIA-BDE/61553/2004 Provided by PTCRIS: 61553 61553 Provided by PTCRIS: 82949 82949 Researcher Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal Universidade dos Açores Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal	Fundação para a Ciência e a Tecnologia Fundação para a Ciência e a Tecnologia, I.P. Concluded
2005/10 - 2007/06	Identifying and preventing the hybridization of highly valuable game species (rabbit, red-legged partridge and quail) with domestic breeds and/or exotic species 61754 Provided by PTCRIS: 61754 Provided by PTCRIS: 83422 83422 POCI/CVT/61754/2004 Principal investigator Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal Universidade dos Açores Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Fundação para a Ciência e a Tecnologia Concluded
2002/06 - 2005/12	Assessing phylogeographic patterns and levels of introgression in the Iberian hare, Lepus granatensis Provided by PTCRIS: 41457 41457 Principal investigator	Fundação para a Ciência e a Tecnologia, I.P.
2002 - 2005	A importância da caracterização genética do coelho-bravo (Oryctolagus cuniculus) e da lebre (Lepus granatensis) na gestão e ordenamento das suas populações.. 69671 Principal investigator	Fundação para a Ciência e a Tecnologia Concluded

Other

	Designation	Funders
2019/07/01 - Current	Inventariação de mamíferos de pequeno porte (Ordens Eulipotyphla, Rodentia e Lagomorpha) - Revisão do Livro Vermelho dos Mamíferos de Portugal Continental e contributo para a avaliação do estado de conservação das espécies POSEUR-03-225-FC-000097 FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal Universidade de Évora, Portugal	FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências Ongoing

Outputs

Publications

Book	Mathias, Maria Da Luz; Fonseca, Carlos; Rodrigues, Luisa; Grilo, Clara; Lopes-Fernandes, Margarida; M. Palmeirim, Jorge; Santos-Reis, Margarida; et al. Livro Vermelho dos Mamíferos de Portugal Continental. FCiências.ID / ICNF. 2023. Smith, A.T.; Johnston, C.H.; Alves, P.C.; Hackländer, K.. Lagomorphs: Pikas, rabbits, and hares of the world. 2018. ALVES, Paulo C. Monterroso, P., Queirós, J., Santos, N., Rodrigues, T.M., Rodrigues, M.M., Santos, E., Gonçalves, D. & Alves, P.C. (2016) Boas práticas na gestão cinegética. CIBIO/InBIO, ICNF & Câmara Municipal de Mértola.. Portugal: CIBIO/InBIO, ICNF & Câmara Municipal de Mértola.. 2016. Published Monterroso, Pedro Seabra; Queirós, João; Santos, Nuno; Rodrigues, Tiago M.; Rodrigues, Marisa; Santos, Emídio; Gonçalves, David; ALVES, Paulo C. Good practices in Game Management. Portugal: CIBIO/InBIO, ICNF & Câmara Municipal de Mértola. 2016. Published ALVES, Paulo C. Ferreira C., Rodrigues T., Leitão M., Paupério J., Gonçalves D. & Alves P.C. (2012). Gestão de Recursos Cinegéticos no Arquipélago dos Açores – O Coelho-bravo. CIBIO-UP e Direcção Regional dos Recursos Florestais, Porto.. Portugal: CIBIO-UP e Direcção Regional dos Recursos Florestais, Açores.. 2012. Published ALVES, Paulo C. Lagomorph Biology: Evolution, Ecology and Conservation. Berlin, Germany: Springer Berlin Heidelberg. 2008. Published • 10.1007/978-3-540-72446-9 • Editor ALVES, Paulo C. Ferreira, C. & Alves, P.C. (2006). Gestão de populações de Coelho-bravo (Oryctolagus cuniculus algirus). Federação Alentejana de Caçadores, Beja.188pp. Portugal: Federação Alentejana de Caçadores. 2006. Published • Editor Carvalho, João Paulo Fidalgo de, coord.; Santos, José António dos; Reimão, Dario; Gallardo, Juan F.; Alves, Paulo Célio; Grosso-Silva, José M.; Santos, Tiago M. dos; et al. O Carvalho Negral. Sersilito. 2005.
Book chapter	Melo-Ferreira, J.; Alves, P.C.. "Melo-Ferreira J, Alves PC (2018.) Lagomorph Systematics. in Lagomorphs of the World. John Hopkins University Press.". In Lagomorphs of the World., 9-12. Germany: John Hopkins University Press., 2018. Published ALVES, Paulo C. "Ferreras P, Díaz-Ruiz F, Alves PC, & Monterroso P (2016) Factores de la coexistencia de mesocarnívoros en Parques Nacionales de ambiente mediterráneo. In: Mengual, P (ed.). Proyectos de Investigación en Parques Nacionales 2011-2014. Organismo Autónomo Parques Nacionales.". In Proyectos de Investigación en Parques Nacionales 2011-2014. Organismo Autónomo Parques Nacionales., 2016. Published Ferreras, Pablo; Díaz-Ruiz, Francisco; ALVES, Paulo C; Monterroso, Pedro Seabra. "Factors affecting the coexistence of mesocarnivores in Mediterranean National Parks". In Research Projects in National Parks, 321-339. Madrid, Spain: Organismo Autónomo Parques Nacionales, MAGRAMA, 2016. Published Herman, J.S.; Paupério, J.; Alves, P.C.; Searle, J.B.. "166. Herman JS, Paupério J, Alves PC, Searle JB (2014). Land bridge calibration rates of molecular evolution in a widespread rodent. Proceedings of the Evolutionary Biology Meeting in Marseille (17th 2013) Marseille, France.". In Proceedings of the Evolutionary Biology Meeting in Marseille (17th 2013) Marseille,. Marseille, France, 2014. Published ALVES, Paulo C. "Janecka J, Alves PC, Karmacharya D, Samsel N, Tallmon D, Schwartz M, Cheng E (2014). Wildlife genetics in rugged landscapes: methods, applications, and examples. In LS Mills & T Tempa (Eds), Wildlife Research Techniques in Rugged Mountainous Landscapes, Bhutan: Ugyen Wangchuck Institute for Conservation and Environment.". In Wildlife Research Techniques in Rugged Mountainous Landscapes, Bhutan: . LS Mills & T Tempa (Eds),. Themphu: Ugyen Wangchuck Institute for Conservation and Environment., 2014. Published ALVES, Paulo C. "Melo-Ferreira J, Alves PC (2009). Evolutionary Hstory, Taxonomy and Genetics of the broom hare. in Situación y conservación de la liebre de piornal Lepus castroviejoi en la Cordillera Cantabrica. (eds. F. Ballesteros, B. Palacios), pp. 17-27. OAPN, Ministerio de Medio Ambiente y Medio Rural y Marino, Spain.". In Situación y conservación de la liebre de piornal Lepus castroviejoi en la Cordillera Cantabrica, 17-27. Spain: OAPN, Ministerio de Medio Ambiente y Medio Rural y Marino, 2009. Published ALVES, Paulo C. "Ballesteros F, Palacios B, Miguel SA, Gostazar C, Alonso G, Alves PC, Palacios J, Rodriguez M, Saez-Buruaga M (2009). El futuro de una espécie poco conhecida en una paisaje cambiante: propuestas para la gestión y conservación de la liebre de Piornal. in Situación y conservación de la liebre de piornal Lepus castroviejoi en la Cordillera Cantabrica. (eds. F. Ballesteros, B. Palacios), pp. 119-". In Situación y conservación de la liebre de piornal Lepus castroviejoi en la Cordillera Cantabrica, 119-139. Spain: OAPN, Ministerio de Medio Ambiente y Medio Rural y Marino,, 2009. Published ALVES, Paulo C. "Hackländer K, Ferrand N & Alves PC (2008). An overview on Lagomorph research. In: P.C. Alves, N. Ferrand, and K. Hackländer (Eds.) Lagomorph Biology: Evolution, Ecology, and Conservation. pag Springer-Verlag, Berlin Heidelberg: 381-391". In Lagomorph Biology: Evolution, Ecology, and Conservation, 381-391. Berlin, Germany: Springer Berlin Heidelberg, 2008. Published Lopez-Martinez, Nieves. "Alves PC & Hackländer K (2008). Lagomorph species: Geographical distribution and conservation status. In: P.C. Alves, N. Ferrand, and K. Hackländer (Eds.) Lagomorph Biology: Evolution, Ecology, and Conservation. Springer-Verlag, Berlin Heidelberg: 395-405.". In Lagomorph Biology: Evolution, Ecology,, 395-405. Berlin, Germany: Springer Berlin Heidelberg, 2008. Published ALVES, Paulo C. "Carvalho J, Alves PC, Grosso-Silva J & Múrias dos Santos T (2007). Biologia e ecologia das florestas de carvalho-negral. In: Árvores e Florestas de Portugal. Vol. II - Os carvalhais, um património a conservar.". In Os carvalhais, um património a conservar, 99-118. Lisboa, Portugal: Público/LPN, 2007. Published ALVES, Paulo C. "Carvalho J, Alves PC, Grosso-Silva J & Múrias dos Santos T (2007). Biologia e ecologia do carvalho-roble. In: Árvores e Florestas de Portugal. Vol. II - Os carvalhais, um património a conservar. Público/LPN (Eds). Lisboa. 185-201.". In Árvores e Florestas de Portugal. Vol. II - Os carvalhais, um património a conservar, 185-201. Lisboa: Público/LPN, 2007. Published ALVES, Paulo C. "Alves PC & Melo-Ferreira J (2007). Are Lepus corsicanus and L. castroviejoi conspecific? Evidence from the analysis of nuclear markers. In de Filippo G., De Riso L., Riga F., Trocchi V. & Troisi S.R. (Eds). Conservazione di Lepus corsicanus stato delle conoscenze. IGF Publ., Napoli, Italia: 45-52.". In Istoria dello stato presente dell'Imperio Ottomano : Nella quale si contengono le massime politiche de' Turchi, I punti principali della Religione Mahomettana, le sette, le eresie, e gli ordini diversi de' suoi religiosi, la disciplina militare, il conto essatto delle forze per mare, e per terra, e delle rendite dello stato loro / composta prima in lingua Inglese dal Sig. Ricaut, Scudiere, Segreta, 45-52. Napoli, Italy: IGF Publ.,, 2007. ALVES, Paulo C. "Ferreira, C. & Alves, P.C. (2006). A gestão das populações de coelho-bravo (Oryctolagus cuniculus algirus) e dos seus habitats. Pp.: 17- 33. In: C. Fonseca (coord.). Gestão das populações cinegéticas e dos seus habitats. Federação de Caça e Pesca da Beira Litoral. Coimbra.". In Gestão das populações cinegéticas e dos seus habitats., 17-33. Coimbra, Portugal: Federação de Caça e Pesca da Beira Litoral., 2006. ALVES, Paulo C. "Esteves, P., Alves, P.C. & Ferrand, N. (2006). O uso de marcadores na gestão e conservação de populações de coelho-bravo (Oryctolagus cuniculus algirus): 11-30. In: C. Ferreira & P.C. Alves (Coord.). Gestão de populações de coelho-bravo (Oryctolagus cuniculus algirus). Federação Alentejana de Caçadores (Eds).". In Gestão de populações de coelho-bravo (Oryctolagus cuniculus algirus). C. Ferreira & P.C. Alves (Coord.), 11-30. Portugal: Federação Alentejana de Caçadores., 2006. Published ALVES, Paulo C. "Paupério, J., Ferreira, C. & Alves, P.C. (2006). Aspectos gerais da biologia do coelho-bravo (Oryctolagus cuniculus algirus): 31-48. In: C. Ferreira & P.C. Alves (Coord.). Gestão de populações de coelho-bravo (Oryctolagus cuniculus algirus). Federação Alentejana de Caçadores (Eds), Beja.". In Gestão de populações de coelho-bravo (Oryctolagus cuniculus algirus), 31-48. Beja, Portugal: Federação Alentejana de Caçadores., 2006. Published ALVES, Paulo C. "Alves P.C., Grosso-Silva J. M. & Múrias dos Santos T., (2005). Fauna, 76-85. In: João P. Carvalho. O Carvalho-Negral. UTAD-Sersilito, Vila Real, 208 pp.". In O Carvalho-Negral, 76-85. Vila Real, Portugal: UTAD-Sersilito, Vila Real,, 2005. Published ALVES, Paulo C. "Queiroz, I. (coord), ALVES, P.C. et al. (2005). Mamíferos. In: Cabral et al. (Eds). Livro Vermelho dos Vertebrados Portugueses. Editado pelo Instituto da Conservação da Natureza. Lisboa.". In Livro Vermelho dos Vertebrados Portugueses.. Lisboa, Portugal: Instituto da Conservação da Natureza.., 2005. Published Queiroz, Ana Isabel; Mira, António; Barroso, Inês; Palmeirim, Jorge; Freitas, Luís; Rodrigues, Luisa; Fernandes, Margarida; et al. "MAMÍFEROS. Livro Vermelho dos Vertebrados de Portugal.". ICN, 2005. ALVES, Paulo C. "Alves, P.C & Niethammer, J. (2003). Die iberischen Hasen. In: Jochen Niethammer und Franz Krapp.". In Handbuch der Säugetiere Europas. Band 3/II (herausgegeben von Franz Krapp). Aula-Verlag., 137-154. Germany, 2003. Published
Conference abstract	Ferraz, G.; Pacheco, C; Tizón, M. ; Marques, Ana Teresa; ALVES, Paulo C; Silva, João Paulo; Mougeot, Francois. "GPS tracking and Accelerometery as tools to remotely detect and monitor the breeding of two declining steppe birds". Paper presented in I Jornada Técnica del GIAE ¿ I Conferência Técnica do GIAE., Madrid, 2023. Published Ferraz, G.; Pacheco, C; Marques, Ana Teresa; ALVES, Paulo C; Silva, João Paulo; Mougeot, Francois. "Using GPS and accelerometer data to study the breeding behaviour of two sandgrouse species.". Paper presented in EUO: 14th European Ornithologists' Union Congress, Lund, 2023. Published Pinho, Catarina J.; Emerson, Brent; ALVES, Paulo C; Vasconcelos, Raquel. "Big and small ¿ how do we fit all? An integrative framework for investigating character displacement". Paper presented in BIODIV Annual Meeting 2021, Virtual Event, 2021. Beja, Pedro; Paupério, Joana; Martins, Filipa; Filipe, Ana Filipa; Rebelo, Hugo; Ferreira, Sónia; Mata, Vanessa A.; et al. "Barcoding LTER Biodiversity: A Case Study and Applications in LTER Sabor (Portugal)". Paper presented in ILTER Open Science Meeting 2016, Kruger National Park, 2016. Published
Conference poster	Sampaio, Sara; Joana Maria Jorge Pereira de Castro Paupério; Queiros, Joao; Joana Pinto; Quaglietta, Lorenzo; ALVES, Paulo C; Beja, Pedro. "Feeding ecology of the Pyrenean desman in NW Iberia revealed by DNA metabarcoding: the role of habitat suitability". Paper presented in Trends in Biodiversity and Evolution - TiBE2020, 2020. Sampaio, Sara; Sara Cáceres; Alexander Gómez-Lépiz; Joana Maria Jorge Pereira de Castro Paupério; ALVES, Paulo C. "DNA barcoding reveals hidden genetic diversity in small mammals of Costa Rica". Paper presented in XV Encontro Nacional de Biologia Evolutiva, 2019. Moraes-Barros, N.; Lopes, Ricardo Jorge; Gonçalves, David; Álvares, Francisco; Martins, F.; Rebelo, Hugo; Paupério, J.; et al. "The importance of Portugal as a main route for wildlife traffic between neotropics and Europe". Paper presented in TiBE2016, Trends in Biodiversity and Evolution: Tropical Biodiversity, 2016. Lopes, Ana M; Correia, Jorge Manuel de Jesus; Melo, Pedro; Ramada, Margarida; Magalhães, M. J.; ALVES, Paulo C; Esteves, Pedro; Abrantes, Joana. "Replacement of rabbit hemorrhagic disease virus (RHDV) genogroup 1 by new variant RHDV2 in Portugal". Paper presented in 3rd European Association of Veterinary Laboratory Diagnosticians Congress, 2014. Farelo, Liliana; ALVES, Paulo C; Boursot, Pierre; Ferrand, Nuno; Melo-Ferreira, José. "Ancient hybridization between hare species: evidence for a large X-effect on speciation?". Paper presented in Trends in Biodiversity and Evolution - TiBE2011, 2011. Farelo, Liliana; ALVES, Paulo C; Boursot, Pierre; Ferrand, Nuno; Melo-Ferreira, José. "The role of the X chromosome on reticulate evolution in hares (Lepus spp.).". Paper presented in Trends in Biodiversity and Evolution - TiBE2010, 2010. Farelo, Liliana; Godinho, Raquel; Gonçalves, David; Ferrand, Nuno; Geraldes, Armando; ALVES, Paulo C. "What can genetics tell us about the European rabbit (Oryctolagus cuniculus) restocking operations in Iberian Peninsula?". Paper presented in XXIX International Union of Game Biologists IUGB Congress, 2009. Farelo, Liliana; Godinho, Raquel; Gonçalves, David; Ferrand, Nuno; Geraldes, Armando; ALVES, Paulo C. "What can genetics tell us about the European rabbit (Oryctolagus cuniculus) restocking operations in Portugal?". Paper presented in 3rd World Lagomorph Conference, 2008.
Journal article	Peter B. Pearman; Olivier Broennimann; Tsipe Aavik; Tamer Albayrak; Paulo C. Alves; F. A. Aravanopoulos; Laura D. Bertola; et al. "Monitoring of species’ genetic diversity in Europe varies greatly and overlooks potential climate change impacts". Nature Ecology & Evolution (2024): https://doi.org/10.1038/s41559-023-02260-0. 10.1038/s41559-023-02260-0 Mafalda S. Ferreira; Timothy J. Thurman; Matthew R. Jones; Liliana Farelo; Alexander V. Kumar; Sebastian M. E. Mortimer; John R. Demboski; et al. "The evolution of white-tailed jackrabbit camouflage in response to past and future seasonal climates". Science (2023): https://doi.org/10.1126/science.ade3984. 10.1126/science.ade3984 Laura Lux; Rainer G. Ulrich; Sérgio Santos-Silva; João Queirós; Christian Imholt; Christian Klotz; Joana Paupério; et al. "Detection and Molecular Characterization of Giardia and Cryptosporidium spp. Circulating in Wild Small Mammals from Portugal". Animals (2023): https://doi.org/10.3390/ani13030515. 10.3390/ani13030515 Antonio J. Carpio; João Queirós; Eduardo Laguna; Saúl Jiménez-Ruiz; Joaquín Vicente; Paulo C. Alves; Pelayo Acevedo. "Understanding the impact of wild boar on the European wild rabbit and red-legged partridge populations using a diet metabarcoding approach". European Journal of Wildlife Research (2023): https://doi.org/10.1007/s10344-023-01647-5. 10.1007/s10344-023-01647-5 Peralta, Dinora; Vaz-Freire, Teresa; Ferreira, Clara; Mendes, Tiago; Mira, Antonio; Santos, Sara; Alves, Paulo C.; et al. "From species detection to population size indexing: the use of sign surveys for monitoring a rare and otherwise elusive small mammal". European Journal of Wildlife Research (2023): https://publons.com/wos-op/publon/56911136/. 10.1007/S10344-022-01634-2 Lopes, Ana M.; Almeida, Tereza; Diz, Silvia; Corte-Real, Joao V.; Osorio, Hugo C.; Ramilo, David W.; Rebelo, Maria Teresa; et al. "The potential role of scavenging flies as mechanical vectors of Lagovirus europaeus/GI.2". Virology Journal (2023): https://publons.com/wos-op/publon/60923369/. 10.1186/S12985-023-02065-4 Pauperio, Joana; Gonzalez, Luis Martin; Martinez, Jesus; Gonzalez, Marcos; Martins, Filipa M. S.; Verissimo, Joana; Puppo, Pamela; et al. "The InBIO barcoding initiative database: DNA barcodes of Iberian Trichoptera, documenting biodiversity for freshwater biomonitoring in a Mediterranean hotspot". Biodiversity Data Journal (2023): https://publons.com/wos-op/publon/55403881/. 10.3897/BDJ.11.E97484 Coelho, Joana; Pacheco, Henrique; Rafael, Marta; Jimenez-Ruiz, Saul; Alves, Paulo Celio; Santos, Nuno. "Dynamics of Humoral Immunity to Myxoma and Rabbit Hemorrhagic Disease Viruses in Wild European Rabbits Assessed by Longitudinal Semiquantitative Serology". Microbiology Spectrum (2023): https://publons.com/wos-op/publon/61101508/. 10.1128/SPECTRUM.00050-23 Illarietti, Tommaso; Acevedo, Pelayo; Alves, Paulo; Jung, Thomas S.; Kierdorf, Horst; Lach, Gilliard; Lopez-Olvera, Jorge; et al. "18 years of the European Journal of Wildlife Research: profile and prospects". European Journal of Wildlife Research (2023): https://publons.com/wos-op/publon/56487081/. 10.1007/S10344-022-01635-1 Costa, Jose; Queiros, Joao; Ballesteros, Fernando; Mucci, Nadia; Souto, Joao; Silva, Eugenio; Melo-Ferreira, Jose; Alves, Paulo Celio. "Low genetic diversity and shallow population structure in the broom hare, Lepus castroviejoi (Lagomorpha: Leporidae)". Biological Journal of the Linnean Society (2023): https://publons.com/wos-op/publon/62931723/. 10.1093/BIOLINNEAN/BLAD080 Nussberger, Beatrice; Barbosa, Soraia; Beaumont, Mark; Currat, Mathias; Devillard, Sebastien; Heurich, Marco; Howard-McCombe, Jo; et al. "A common statement on anthropogenic hybridization of the European wildcat (Felis silvestris)". Frontiers in Ecology and Evolution (2023): https://publons.com/wos-op/publon/62711845/. 10.3389/FEVO.2023.1156387 Rajbhandari, Rajesh Man; Napit, Rajindra; Manandhar, Prajwol; Raut, Roji; Gurung, Anupama; Poudel, Ajit; Shrestha, Nisha; et al. "Phylogenomic analysis supports Mycobacterium tuberculosis transmission between humans and elephants". Frontiers in Veterinary Science (2023): https://publons.com/wos-op/publon/61553890/. 10.3389/FVETS.2023.1133823 Jimenez-Ruiz, Saul; Rafael, Marta; Coelho, Joana; Pacheco, Henrique; Fernandes, Manuel; Alves, Paulo Celio; Santos, Nuno. "High Mortality of Wild European Rabbits during a Natural Outbreak of Rabbit Haemorrhagic Disease GI.2 Revealed by a Capture-Mark-Recapture Study". Transboundary and Emerging Diseases (2023): https://publons.com/wos-op/publon/60935309/. 10.1155/2023/3451338 Marques, João Pedro; ALVES, Paulo C; Rosário, Isabel Amorim do; Lopes, Ricardo J.; Moura, Mónica; Meyers, Gene; Sim-Sim, Manuela; et al. "Building a Portuguese Coalition for Biodiversity Genomics". (2023): http://hdl.handle.net/10400.3/6825. 10.32942/X20W3Q Theissinger, Kathrin; Fernandes, C; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; et al. "How genomics can help biodiversity conservation". (2023): http://hdl.handle.net/10451/58355. 10.1016/j.tig.2023.01.005 Peralta, Dinora; Vaz Freire, Teresa; Ferreira, Clara; Mendes, Tiago; Mira, António; Santos, Sara; Alves, Paulo Célio; et al. "From species detection to population size indexing: The use of sign surveys for monitoring an elusive small mammal". (2023): http://hdl.handle.net/10174/34958. https://doi.org/10.1007/s10344-022-01634-2 Mestre, Frederico; Barbosa, Soraia; Garrido-García, José António; Pita, Ricardo; Mira, António; Alves, Paulo Célio; Paupério, Joana; Searle, Jeremy B.; Beja, Pedro. "Inferring past refugia and range dynamics through the integration of fossil, niche modelling and genomic data". (2023): http://hdl.handle.net/10174/33333. https://doi.org/10.1111/jbi.14492 Alberto Moraga-Fernández; Marta Sánchez-Sánchez; João Queirós; Ana M. Lopes; Joaquín Vicente; Xosé Pardavila; Jorge Sereno-Cadierno; et al. "A study of viral pathogens in bat species in the Iberian Peninsula: identification of new coronavirus genetic variants". International Journal of Veterinary Science and Medicine (2022): https://doi.org/10.1080/23144599.2022.2139985. 10.1080/23144599.2022.2139985 Henry D. Kunerth; Joaquim T. Tapisso; Raul Valente; Maria da Luz Mathias; Paulo C. Alves; Jeremy B. Searle; Rodrigo Vega; Joana Paupério. "Characterising Mitochondrial Capture in an Iberian Shrew". Genes (2022): https://doi.org/10.3390/genes13122228. 10.3390/genes13122228 Frederico Mestre; Soraia Barbosa; José A. Garrido-García; Ricardo Pita; António Mira; Paulo C. Alves; Joana Paupério; Jeremy B. Searle; Pedro Beja. "Inferring past refugia and range dynamics through the integration of fossil, niche modelling and genomic data". Journal of Biogeography (2022): https://doi.org/10.1111/jbi.14492. 10.1111/jbi.14492 Margarita Villar; Rajesh Man Rajbhandari; Sara Artigas-Jerónimo; Marinela Contreras; Amir Sadaula; Dibesh Karmacharya; Paulo Célio Alves; Christian Gortázar; José de la Fuente. "Differentially Represented Proteins in Response to Infection with Mycobacterium tuberculosis Identified by Quantitative Serum Proteomics in Asian Elephants". Pathogens (2022): https://doi.org/10.3390/pathogens11091010. 10.3390/pathogens11091010 Clara Grilo; Beatriz C. Afonso; Filipe Afonso; Marta Alexandre; Sara Aliácar; Ana Almeida; Ivan Prego Alonso; et al. "MAMMALS IN PORTUGAL : A data set of terrestrial, volant, and marine mammal occurrences in P ortugal". Ecology (2022): https://doi.org/10.1002/ecy.3654. 10.1002/ecy.3654 Gonzalez-Barrio, David; Diezma-Diaz, Carlos; Queiros, Joao; Alves, Paulo C.; Velarde, Roser; Estruch, Josep; Vieira-Pinto, Madalena; Alvarez-Garcia, Gema. "Absence of anti-Besnoitia spp. specific antibodies in European wild lagomorphs from the Iberian Peninsula". Transboundary and Emerging Diseases (2022): https://publons.com/wos-op/publon/55287349/. 10.1111/TBED.14730 Queiros, Joao; Barros, Silvia C.; Sanchez-Cano, Alberto; Henriques, Ana Margarida; Fagulha, Teresa; dos Santos, Fabio Abade; Duarte, Margarida D.; et al. "Bagaza Virus in Wild Birds, Portugal, 2021". Emerging Infectious Diseases (2022): https://publons.com/wos-op/publon/53135152/. 10.3201/EID2807.212408 Pacheco, Henrique; Lopes, Ana M.; Barcena, Juan; Blanco, Esther; Abrantes, Joana; Esteves, Pedro; Choquet, Remi; Alves, Paulo Celio; Santos, Nuno. "Multi-event capture-recapture models estimate the diagnostic performance of serological tests for myxoma and rabbit haemorrhagic disease viruses in the absence of reference samples". Transboundary and Emerging Diseases (2022): https://publons.com/wos-op/publon/53178072/. 10.1111/TBED.14657 Rajbhandari, Rajesh Man; de la Fuente, Jose; Karmacharya, Dibesh; Mathema, Sujala; Maharjan, Bijay; Dixit, Sameer Mani; Shrestha, Nisha; et al. "Understanding Mycobacterium tuberculosis complex in elephants through a One Health approach: a systematic review". BMC Veterinary Research (2022): https://publons.com/wos-op/publon/53135154/. 10.1186/S12917-022-03356-8 Nilson, Sara M.; Gandolfi, Barbara; Grahn, Robert A.; Kurushima, Jennifer D.; Lipinski, Monika J.; Randi, Ettore; Waly, Nashwa E.; et al. "Genetics of randomly bred cats support the cradle of cat domestication being in the Near East". Heredity (2022): https://publons.com/wos-op/publon/55287350/. 10.1038/S41437-022-00568-4 Abade dos Santos, Fabio A.; Santos, Nuno; Carvalho, Carina L.; Martinez-Haro, Monica; Gortazar, Christian; Garcia-Bocanegra, Ignacio; Capucci, Lorenzo; Duarte, Margarida; Alves, Paulo Celio. "Retrospective serological and molecular survey of myxoma or antigenically related virus in the Iberian hare, Lepus granatensis". Transboundary and Emerging Diseases (2022): https://publons.com/wos-op/publon/54626081/. 10.1111/TBED.14734 Santos, Nuno; Ferreras Colino, Elisa; Cruz Arnal, Maria; Fernandez de Luco, Daniel; Sevilla, Iker; Garrido, Joseba M.; Fonseca, Eliana; et al. "Complementary roles of wild boar and red deer to animal tuberculosis maintenance in multi-host communities". Epidemics (2022): https://publons.com/wos-op/publon/54626061/. 10.1016/J.EPIDEM.2022.100633 Matias, Gonçalo; Rosalino, L. M.; Alves, Paulo Célio; Tiesmeyer, Annika; Nowak, Carsten; Ramos, Luana; Steyer, Katharina; et al. "Genetic integrity of European wildcats: Variation across biomes mandates geographically tailored conservation strategies". Biological Conservation (2022): http://hdl.handle.net/10451/51849. 10.1016/j.biocon.2022.109518 Pablo Ferreras; José Jiménez; Francisco Díaz-Ruiz; Jorge Tobajas; Paulo Célio Alves; Pedro Monterroso. "Integrating multiple datasets into spatially-explicit capture-recapture models to estimate the abundance of a locally scarce felid". Biodiversity and Conservation (2021): https://doi.org/10.1007/s10531-021-02309-1. 10.1007/s10531-021-02309-1 M. Rocha; A. Serronha; M. Rodrigues; P. C. Alves; P. Monterroso. "Comfort over safety: thermoregulation overshadows predation risk effects in the activity of a keystone prey". Journal of Zoology (2021): https://doi.org/10.1111/jzo.12947. 10.1111/jzo.12947 Antonio J. Carpio; José Melo-Ferreira; Mónica Martinez-Haro; Liliana Farelo; Rita Campos; Paulo C. Alves; Pelayo Acevedo; Cynthia Riginos. "Iberian hares with anciently introgressed mitochondrial DNA express a marginal environmental niche". Journal of Biogeography 48 9 (2021): 2328-2336. https://doi.org/10.1111/jbi.14155. 10.1111/jbi.14155 Martins, F.M.S.; Feio, M.J.; Porto, M.; Filipe, A.F.; Bonin, A.; Serra, S.R.Q.; Alves, P.C.; Taberlet, P.; Beja, P.. "Assessing changes in stream macroinvertebrate communities across ecological gradients using morphological versus DNA metabarcoding approaches". 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Journal of Zoological Systematics and Evolutionary Research 44 1 (2006): 88-99. http://www.scopus.com/inward/record.url?eid=2-s2.0-33645294052&partnerID=MN8TOARS. 10.1111/j.1439-0469.2005.00345.x Melo-Ferreira, J.; Boursot, P.; Suchentrunk, F.; Ferrand, N.; Alves, P.C.. "Invasion from the cold past: Extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in northern Iberia". Molecular Ecology 14 8 (2005): 2459-2464. http://www.scopus.com/inward/record.url?eid=2-s2.0-21244445043&partnerID=MN8TOARS. 10.1111/j.1365-294X.2005.02599.x Randi, E.; Alves, P.C.; Carranza, J.; Milosevic-Zlatanovi, S.; Sfougaris, A.; Mucci, N.. "Phylogeography of roe deer (Capreolus capreolus) populations: The effects of historical genetic subdivisions and recent nonequilibrium dynamics". Molecular Ecology 13 10 (2004): 3071-3083. http://www.scopus.com/inward/record.url?eid=2-s2.0-4644324872&partnerID=MN8TOARS. 10.1111/j.1365-294X.2004.02279.x Alves, P.C.; Ferrand, N.; Suchentrunk, F.; Harris, D.J.. "Ancient introgression of Lepus timidus mtDNA into L. granatensis and L. europaeus in the Iberian Peninsula". Molecular Phylogenetics and Evolution 27 1 (2003): 70-80. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037387722&partnerID=MN8TOARS. 10.1016/S1055-7903(02)00417-7 Alves, P.C.; Rocha, A.. "Environmental factors have little influence on the reproductive activity of the Iberian hare (Lepus granatensis)". Wildlife Research 30 6 (2003): 639-647. http://www.scopus.com/inward/record.url?eid=2-s2.0-0842328897&partnerID=MN8TOARS. 10.1071/WR02035 Gonçalves, H.; Alves, P.C.; Rocha, A.. "Seasonal variation in the reproductive activity of the wild rabbit (Oryctolagus cuniculus algirus) in a Mediterranean ecosystem". Wildlife Research 29 2 (2002): 165-173. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036295112&partnerID=MN8TOARS. 10.1071/WR00048 Esteves, P.J.; Alves, P.C.; Ferrand, N.; Van Der Loo, W.. "Hotspot variation at the CH2-CH3 interface of leporid IgG antibodies (Oryctolagus, Sylvilagus and Lepus)". European Journal of Immunogenetics 29 6 (2002): 529-535. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036434588&partnerID=MN8TOARS. 10.1046/j.1365-2370.2002.00355.x Esteves, P.J.; Alves, P.C.; Ferrand, N.; Van Der Loo, W.. "Restriction fragment alleles of the rabbit IGHG genes with reference to the rabbit IGHGCH2 or e locus polymorphism". Animal Genetics 33 4 (2002): 309-311. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035988983&partnerID=MN8TOARS. 10.1046/j.1365-2052.2002.00877.x Alves, P.C.; Gonçalves, H.; Santos, M.; Rocha, A.. "Reproductive biology of the Iberian hare, Lepus granatensis, in Portugal". Mammalian Biology 67 6 (2002): 358-371. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036925328&partnerID=MN8TOARS. 10.1078/1616-5047-00051 Alves, P.C.; Ferrand, N.; Suchentrunk, F.; ALVES, PC; FERRAND, N; SUCHENTRUNK, F. "Developmental stability and protein heterozygosity in a local population of Iberian hares (Lepus granatensis)". Zeitschrift fur Saugetierkunde 66 4 (2001): 238-250. http://www.scopus.com/inward/record.url?eid=2-s2.0-28344436107&partnerID=MN8TOARS. Alves, P.C.; Branco, M.; Matias, O.; Ferrand, N.; ALVES, PC; BRANCO, M; MATIAS, O; et al.. "New genetic variation in European hares, Lepus granatensis and L. europaeus". Biochemical Genetics 38 3-4 (2000): 87-96. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033752869&partnerID=MN8TOARS. 10.1023/A:1002715913943 Alves, P.C.; Ferrand, N.. "Genetic variability in Portuguese populations of the Iberian hare, Lepus granatensis". Folia Zoologica 48 SUPPL. 1 (1999): 3-10. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033498933&partnerID=MN8TOARS.
Magazine article	Duarte, Margarida; Santos, F. A.; Carvalho, Carina; Fagulha, T.; Monteiro, J.; Esteves, Pedro; Abrantes, Joana; et al. "20 perguntas & respostas sobre mixomatose em lebre-ibérica", Caça e Cães de Caça, 2020 Duarte, Margarida; Carvalho, Carina; Abade dos Santos, F.; Fagulha, T.; Albuquerque, T.; Gomes, J.; Waap, Helga; et al. "Objetivos e estratégia do projeto +Coelho: primeiro ano de implementação", Vida Rural, 2019
Preprint	Peter B. Pearman; Olivier Broennimann; Tamer Albayrak; Paulo Célio Alves; Laura D. Bertola; Aleksandra Biedrzycka; Elena Buzan; et al. "Conserving genetic diversity during climate change: Niche marginality and discrepant monitoring capacity in Europe". 2023. https://doi.org/10.1101/2023.03.24.533448. 10.1101/2023.03.24.533448
Report	Fontes, João; Moreira, Mafalda; ALVES, Paulo C; Gonçalves, David. 2018. Relatório Intercalar do Projeto - Estudo piloto para avaliação do impacto do coelho-bravo no ecossistema¿: Estado de desenvolvimento do estudo piloto e atualização da análise dos dados da monitorização da abundância de coelho-bravo (recolhidos nos censos noturnos) (" Interim Report of the Project - Pilot study to assess the impact of wild rabbit on the ecosystem").

Other

Other output

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.. ABSTRACT: A global genome database of all of Earth’s species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic information available. To contribute to a more complete planetary genomic database, scientists and institutions across the world have united under the Ear. 2023. Mc Cartney, Ann M.; Formenti, Giulio; Mouton, Alice; De Panis, Diego; Marins, Luísa S; Leitão, Henrique; Diedericks, Genevieve; et al. http://hdl.handle.net/10400.3/6875.
10.1101/2023.09.25.559365
The evolutionary pathways for local adaptation in mountain hares. Molecular Ecology. 2021. Iwona Giska; João Pimenta; Liliana Farelo; Pierre Boursot; Klaus Hackländer; Hannes Jenny; Neil Reid; et al. https://doi.org/10.1101/2021.09.16.460230.
10.1101/2021.09.16.460230
Crowdfunded whole-genome sequencing of the celebrity cat Lil BUB identifies causal mutations for her osteopetrosis and polydactyly. 2019. Bridavsky, M.; Kuhl, H.; Woodruff, A.; Kornak, U.; Timmermann, B.; Mages, N.; Lupiáñez, D.G.; et al. http://www.scopus.com/inward/record.url?eid=2-s2.0-85095653956&partnerID=MN8TOARS.
10.1101/556761

Activities

Oral presentation

	Presentation title	Event name Host (Event location)
2019	Conservation genetics: bridging conservation biology and genetics	XXIII Congreso SMBC (Sociedad Mesoamericana para la Biología y la Conservación) Sociedad Mesoamericana para la Biología y la Conservación (Antiqua, Guatemala)
2019	Genetic patrimony of game species	Game and Wildlife Summit INIAV (Lisbon)
2019	Red Deer in Iberia: insights from molecular ecological studies	SABIO, Annual Meeting IREC- CSIC, University of Castilla la Mancha (Ciudad Real, Spain)
2018	The new conservation genetics era: bridging conservation biology gap with genomics.	BeGenDiv, Genomics Symposium 2018 University of Berlim (Berlim, Germany)
2017	Conservation genetics: How can we use genetics to conserve species	XXI Mesoamerican Society for Biology and Conservation Congress. Society for Biology and Conservation Congress. (San Jose, Costa Rica)
2017	Research at the University of Porto in non-invasive sampling: assessing species identification, distribution and population structure	Invited Seminar University of Kathmandu (Kathmandu, Nepal)
2016	Perspectivas de entrenamiento en Biología y Genética de la Conservación en la Universidad de Porto, Portugal	IX Encuentro Nacional sobre Biologia de la Conservación. Genética da Conservación, acciones futuras en Costa Rica Mesoamerican Society for Biology and Conservation Congress (Heredia, Costa Rica)
2016	Poblaciones de conejo silvestre en las futuras áreas de reintrodución	V Seminario Internacional de Conservación del Lince Ibérico University of Seville (Seville, Spain)
2016	Genetica, sistema inmunitario y enfermedades de la liebre iberica	Jornadas sobre la liebre iberica: presente y futuro IRIAF, Centro de Investigacion Apícola y Agroambiental de Marchamalo (Guadalajara)
2015	Conservation Genetics in the Genomic Era	Guest lecture at College of Natural Resources. North Carolina State University (Raleigh, United States)
2015	Lagomorphs in Europe: the European rabbit as a conservation paradox	Guest lecture at Mammal course Cornell University (Ithaca, United States)
2015	Non-invasive genetic tools for mammal conservation.	Guest lecture at Mammal course Cornell University (Ithaca, United States)
2015	Reticulate evolution in Lagomorphs: conservation and management implications.	Workshop on Lagomorph Biology, European Congress of Mammalogy ECM7 University of Stockholm (Stockholm, Sweden)
2015	Wild rabbit management issues in Iberia	Why wildlife, Workshop. The Global Challenges University Alliance (CGUA) University of Uppsala (Uppsala, Sweden)
2014	Hybridization, adaptation and historical demography: Hares, Lepus spp, as an example.	Natural History Museum of Berlin (Berlim, Germany)
2014	The wild rabbit (Oryctolagus cuniculus): current status, genetic structure and population management	LaGomiCs (Lagomorph Genomics Consortium) meeting. COST Action “A Collaborative European Network on Rabbit Genome Biology – RGB-Net (Bologna, Italy)
2014	Non-invasive genetic sampling to monitor biodiversity	Conservation Biology Research Symposium IUWICE (Bhumtam, Bhutan)
2014	Non-invasive genetic sampling: assessing species identification, distribution and population structure	Guest Lecture University of Kathmandu
2014	Jackrabbits and hares: an intriguing case of reticulate evolution	Guest Seminar University of Georgia (United States)
2013	An overview on Lagomorph biology.	First Lagomorph Genomics Meeting. RGB-Net (COST Action “A Collaborative European Network on Rabbit Genome Biology – RGB-Net”) and World Lagomorph Society (Bologna, Italy)
2013	From elephants to voles: examples of better conservation based on non-invasive genetic sampling	Guest letter at Mammalogy class Cornell University (Ithaca, United States)
2013	Reticulate evolution and recurrent mitochondrial DNA introgression in hares and jackrabbits (Lepus spp).	Evo-Group Seminar, Cornell University (Ithaca, United States)
2012	Métodos não invasivos: identificação molecular de espécies e detecção de hibridação	Uso de recursos genéticos para la conservación de espécies amenazadas. Workshop at ConGRESS (Spain)
2012	Overview in lagomorph research: the notable and the overlooked	General Assembly of the World Lagomorph Society at the 4th World Lagomorph Conference, (Vienna, Austria)
2012	How Conservation Genomics can improve the preservation of wild lagomorph population	Workshop of the RGB-Net (COST Action “A Collaborative European Network on Rabbit Genome Biology – RGB-Net” 4th World Lagomorph Conference, (Vienna, Austria)
2011	When mtDNA is misleading: the ubiquity of mountain hare mitochondria in several other species due to secondary introgression	Seminar Series – EBD Estação Biológica de Doñana, (Seville, Spain)
2011	Reticulate evolution and recurrent mitochondrial DNA introgression in hares (Lepus spp.).	VIth European Congress of Mammalogy (Paris, France)
2011	Jackrabbits and hares: an intriguing case of reticulate evolution.	Seminar Series, Wildlife Biology Program College of Forestry and Conservation, University of Montana (Missoula, United States)
2011	The wild rabbit (Oryctolagus cuniculus) in the Iberian Peninsula: current status, genetic structure and population management	II International European Rabbit Congress (Toledo, Spain)
2010	From elephants to mice: examples of better conservation based on non-invasive genetic sampling	. International Workshop on “Wildlife Research Techniques in Rugged Mountainous Asian landscapes IUWICE (Bhutan)
2010	Estructura genética y manejo de las poblaciones de conejo silvestre	II International European rabbit seminar University of Cordoba (Cordoba, Spain)
2009	Ciência y Tecnología al servicio de la Caza, de la Conservación y de la Sociedad. Técnicas forenses: CSI Animal	Caza, Conservación y Sociedad: una decada de Encontros IREC, University of Castilla La Mancha (Ciudad Real)

Supervision

	Thesis Title Role	Degree Subject (Type) Institution / Organization
2022/11/01 - Current	On the path of the elusive sandgrouse: a multi-scale framework for the conservation of two endangered steppe land birds Co-supervisor	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto, Faculdade de Ciências, Portugal
2022/03/01 - Current	Epidemiological investigation in populations of European wildcats (Felis silvestris), sympatric domestic cats (Felis catus) and their hybrids, representing different gradients of conservation and disturbance: a multi-disciplinary and transboundary approach Co-supervisor	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto, Faculdade de Ciências, Portugal
2020/11/01 - Current	Trophic ecology of the endemic Azores Woodpigeon Columba palumbus azorica Co-supervisor	Biologia (PhD) Universidade do Porto, Faculdade de Ciências, Portugal
2019/10/01 - Current	Big and small: How do we fit all? An integrative framework for investigating character displacement Co-supervisor	Biodiversity, Genetics and Evolution, BIODIV (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2018 - Current	Tuberculosis in Asian Elephant: an One Health Perspective Supervisor of Rajesh Man Rajbhandari	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2017 - Current	Disease ecology in wild rabbit (Oryctolagus cuniculus algirus) populations: a model for individual- and population-scale analysis of host-pathogen dynamic. Supervisor of Nuno Santos	Pos-doc FCT grant (SFRH/BPD/116596/2016) (Other) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2016 - Current	Towards Next-generation Biodiversity Monitoring: Improving Freshwater Quality Assessment using DNA Metabarcoding Co-supervisor of Filipa Matos Silva Martins	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2016 - Current	Population structure and genbetic diversity of the Brown Howling Monkey, Alouatta guariba clamitans, after an oubreack of yellow feber in Brasil Co-supervisor of Joana Beschorner da Veiga	Biodiversidade, Genética e Evolução (Degree) Universidade do Porto Faculdade de Ciências, Portugal
2016 - Current	Conservation genetics of the hirola antelope relict: an entire mammal genus on the brink of extinction. Co-supervisor of Michael Jowerz	Pos-doc FCT grant (SFRH/BPD/109148/2015) (Other) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2013 - Current	The role of landscape connectivity and social organization on establishment and dispersion of European wild rabbits (Oryctolagus cuniculus) Co-supervisor of Claudia Sofia Marques Encarnação	Universidade de Évora, Portugal
2021/03/01 - 2025/03/01	Myxomatosis in the Iberian hares: epidemiology, risk factors and genetic basis of host susceptibility Supervisor	Biodiversity, Genetics and Evolution, BIODIV (PhD) Faculdade de Ciências da Universidade do Porto, Portugal
2015/03 - 2023/11/30	Small mammals distribution and genetic diversity along altitudinal gradients in Costa Rica Supervisor of Alexander Gómez Lépiz	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2022 - 2022	Capturing leporids across space and time: a molecular perspective Supervisor	Biodiversidade, Genética e Evolução (Master) Universidade do Porto Faculdade de Ciências, Portugal
2022 - 2022	Assessing the distribution and genetic diversity of the broom hare, Lepus castroviejoi, for improving conservation planning Supervisor	Biodiversidade, Genética e Evolução (Master) Universidade do Porto Faculdade de Ciências, Portugal
2022 - 2022	Myxomatosis in the Iberian hares: epidemiology, risk factors and genetic basis of host susceptibility Supervisor	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2022 - 2022	Eco-epidemiology at the European wildcat (Felis silvestris) - domestic cat (Felis catus) interface: a multi-disciplinary and trans-boundary approach Supervisor	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2022 - 2022	Connectivity, trophic ecology and conservation of the threatened Pyrenean Desman (Galemys pyrenaicus) Supervisor	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2016 - 2021/03/02	The genetic basis of adaptive traits in a natural system: seasonal coat color change and altitude adaptation in white-tailed jackrabbits (Lepus townsendii) Co-supervisor of Ana Mafalda Sousa Ferreira	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2019/01/10 - 2020/12/01	Feeding ecology of the Pyrenean desman in NW Iberia revealed by DNA metabarcoding: the role of habitat suitability. Co-supervisor	Master in Biodiversity, Genetics and Evolution (Master) Faculdade de Ciências da Universidade do Porto, Portugal
2016 - 2019	ADAPTIVE POTENTIAL TO CAMOUFLAGE MISMATCH Co-supervisor of Marketa Zimova	Wildlife Biology (PhD) University of Montana College of Forestry and Conservation, United States
2014 - 2018	Genome admixture with massive mitochondrial DNA introgression in hares (Lepus spp.): the relative roles of demography and natural selection Co-supervisor of Fernando António Pereira da Silva Ferreira Seixas	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2013 - 2018	The evolutionary history and conservation of an endemic and threatened Iberian rodent: the Cabrera vole (Microtus cabrerae) Co-supervisor of Soraia Isabel Moreira Barbosa	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2013 - 2017	Evolution of immunoglobulins in Leporids : inferences of genetic resistance against pathogens Supervisor of Ana Maria Pinheiro Rombert Pinhão	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2012 - 2017	Conservation of Genetic Diversity in Insular Systems under Climate Change Scenarios: a multi-disciplinary approach integrating phylogenetics, geostatistics, species distribution modeling, and reserve selection algorithms to the reptiles of the Socotra archipelago. Pos-doc grant from FCT (SFRH/BPD/79913/2011), 2012-2017. Supervisor of Raquel Vasconcelos
2012 - 2017	Host-pathogen Interactions: The Role of Host Genetics and Co-infection in Natural Populations Co-supervisor of João Luís Teixeira de Queirós	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2012 - 2017	Conservation of Genetic Diversity in Insular Systems under Climate Change Scenarios: a multi-disciplinary approach integrating phylogenetics, geostatistics, species distribution modeling, and reserve selection algorithms to the reptiles of the Socotra archipelago. Supervisor of Raquel Vasconcelos	Pos-doc grant from FCT (SFRH/BPD/79913/2011), (Other) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2015 - 2016	Population history and taxonomy of African hares (genus Lepus) inferred from genetic variation Co-supervisor of Sara Ribeiro Barbosa Almendra Lado	Biodiversidade, Genética e Evolução (Master) Universidade do Porto Faculdade de Ciências, Portugal
2011 - 2016	Ecological Interactions and Species Coexistence in Iberian Mesocarnivore Communities Co-supervisor of Pedro Seabra Monterroso	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2014 - 2015	Understanding the genetic basis of seasonal coat color change in the snowshoe hare, Lepus americanus : an RNA sequencing approach Co-supervisor	Biodiversidade, Genética e Evolução (Master) Universidade do Porto Faculdade de Ciências, Portugal
2014 - 2015	Assessing hybridization between wildcat and domestic cat : the particular case of Iberian Peninsula and some insights into North Africa Supervisor	Biodiversidade, Genética e Evolução (Master) Universidade do Porto Faculdade de Ciências, Portugal
2014 - 2015	Assessing hybridization between wildcat and domestic cat: the particular case of Iberian Peninsula and some insights into North Africa. Supervisor	Mestrado em Biodiversidade, Genética e Evolução. (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2011 - 2015	Environment and biodiversity: a multidisciplinary approach to dynamic patterns in the Iberian Peninsula Co-supervisor	Biodiversidade, Genética e Evolução (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2008 - 2015	Natural selection and genome admixture: tracing adaptive and non-adaptive evolutionary processes. Pos-doc grant from FCT (SFRH/BPD/43264/2008), 2008-2015 Supervisor
2008 - 2015	Natural selection and genome admixture: tracing adaptive and non-adaptive evolutionary processes. Supervisor of José Fernando Melo-Ferreira.	Pos-doc grant from FCT (SFRH/BPD/43264/2008) (Other) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2013 - 2014	Mammalian mesocarnivore communities in the Iberian Peninsula: time-series and large-scale analysis for successful top-order predator reintroductions. Pos-doc grant from FCT (SFRH/BPD/88643/2012). 2013-2014 Supervisor of Catarina Manuel Andrade de Campos Ferreira.
2013 - 2014	Integrating the power of macroecology and genomics to extract further insights for conservation biology: Lepus spp. as case study. Pos-doc grant from FCT (SFRH/BPD/90320/2012), 2013-2014.
2013 - 2014	Combining movement and genetic data to assess a forest carnivore´s response to forest fragmentation Supervisor of André Filipe Plácido Lourenço	Biodiversidade, Genética e Evolução (Master) Universidade do Porto Faculdade de Ciências, Portugal
2013 - 2014	Regional and fine-scale molecular diversity of the Cabrera vole (Microtus Cabrerae) Supervisor of Clara Maria Mendes Alves Ferreira	Biodiversidade, Genética e Evolução (Master) Universidade do Porto Faculdade de Ciências, Portugal
2013 - 2014	Seasonal coat color variation in hares (Lepus spp). Co-supervisor of Ana Mafalda Sousa Ferreira	Mestrado em Biodiversidade, Genética e Evolução (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2013 - 2014	Integrating the power of macroecology and genomics to extract further insights for conservation biology: Lepus spp. as case study. Supervisor of Pelayo Acevedo Lavandera	Pos-doc grant from FCT (SFRH/BPD/90320/2012), (Other) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2012 - 2014	Regional and fine-scale molecular diversity of the Cabrera vole (Microtus cabrerae). Supervisor of Clara Ferreira	Mestrado em Biodiversidade, Genética e Evolução. (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2012 - 2014	Análise da dieta da Marta (Martes martes) e da Fuinha (Martes foina) na Peninsula Ibérica. Co-supervisor of Pedro Rebelo	Mestrado em Biodiversidade, Genética e Evolução. (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2012 - 2014	A Tuberculose e Pseudo-Raiva no javali em Portugal: implicações para a conservação. Supervisor of Vanessa Alexandra Vieira Soeiro	Mestrado em Biologia da Conservação (Master) Universidade de Évora, Portugal
2012 - 2014	From conservation genetics to conservation genomics: building animal models to understand the relative importance of adaptation and low effective population size in vertebrates for long-term conservation. Supervisor of Maria Raquel Barata Godinho.	Pos-doc grant from FCT (SFRH/BPD/80969/2011), (Other) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2007 - 2014	Towards a wide genetic approach for the European wildcat [Felis silvestris silvestris] conservation: improving noninvasive molecular techniques, population analysis and admixture inferences Co-supervisor of Rita Isabel Ribeiro Miranda de Oliveira	Biologia (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2007 - 2014	Cryptic Speciation in the Field Vole (Microtus agrestis): Insights from Genetic, Karyotypic and Morphometric data Co-supervisor of Joana Maria Jorge Pereira de Castro Paupério	Biologia (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2011 - 2013	Combining movement and genetic data to assess a forest carnivore’s response to forest fragmentation. Supervisor	Mestrado em Biodiversidade, Genética e Evolução. (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2011 - 2013	The Speciation History of North American Hares (Lepus spp.): Divergence with Gene Flow. Co-supervisor of Fernando Ferreira Seixas	Mestrado em Biodiversidade, Genética e Evolução. (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2011 - 2012	Mammalian mesocarnivore communities in the Iberian Peninsula: time-series and large-scale analysis for successful top-order predator reintroductions. Supervisor of Catarina Manuel Andrade de Campos Ferreira.	Pos-doc grant from FCT (SFRH/BPD/88643/2012). (Other) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2010 - 2012	Decoding the mechanisms underlying mitogenomic evolution in hares (Lepus spp.). Co-supervisor of Joana Maria de Almeida Pereira Vilela	Mestrado em Biodiversidade, Genética e Evolução. (Master) Universidade do Porto Faculdade de Ciências, Portugal
2008 - 2012	Reticulate Evolution Among Hares (lepus Spp.): the Combined Effects of Glacial Cycles, Demography and Natural Selection Inferred from Molecular Variation Co-supervisor of José Fernando Melo Ferreira	Biologia (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2007 - 2012	Hybridization, evolution and conservation: Investigating natural and human-mediated admixture processes between divergent genomes in model species from the Iberian Peninsula. Supervisor of Maria Raquel Barata Godinho.	Pos doc grant from FCT (SFRH/BPD/36021/2007), 2007-2012. (Other) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2010 - 2011	Monitorização de populações de coelho-bravo, Oryctolagus cuniculus: análise comparativa de densidades absolutas e índices de abundância relativa. Supervisor of Hugo Lousa	Mestrado em Ecologia e Ordenamento do Território (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2010 - 2011	The role of the X chromosome on reticulate evolution of hares (Lepus spp.). Co-supervisor of Liliana Maria da Silva Farelo	Mestrado em Biodiversidade, Genética e Evolução (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2010 - 2011	Padrões Biogeográficos de três espécies de mesocarnivoros simpátricos em Portugal: modelação ecológica e distribuição Supervisor of Pedro Manuel Gomes Morreira	Mestrado em Biodiversidade e Recursos Genéticos Universidade do Porto, Faculdade de Ciências, Portugal
2010 - 2011	Comparação de dois métodos de monitorização de carnívoros. Armadilhagem de pêlo vs. Armadilhagem fotográfica. Supervisor	Mestrado em Biodiversidade, Genética e Evolução. (Master) Universidade do Porto Faculdade de Ciências, Portugal
2009 - 2011	Molecular species identification of the Iberian rodents. Supervisor	Mestrado em Biodiversidade, Genética e Evolução, (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2008 - 2009	Aplicação de métodos moleculares não invasivos no estudo de carnívoros Ibéricos. Supervisor	Mestrado em Biodiversidade e Recursos Genéticos (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2008 - 2009	Ecological and human determinants in the genetic structure and variability of the Iberian wolf in Portugal. Supervisor	Mestrado em Biodiversidade, Genética e Evolução. Universidade do Porto, Faculdade de Ciências, Portugal
2007 - 2009	Estudo da reprodução do coelho-bravo na região de Alto Tâmega. Supervisor of Jorge Mata Pires	Mestrado em Gestão e Conservação da Natureza (Master) Instituto Politécnico de Bragança, Portugal Universidade dos Açores, Portugal
2006 - 2008	Análise paleo-climática da Península Ibérica e sua aplicação em estudos filgeográficos. Supervisor of Pedro Tarroso	Mestrado em Biodiversidade e Recursos Genéticos (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2006 - 2007	Revisão da fauna do género Rhagonycha (Insecta, Coleoptera, Cantharidae) de Portugal continental. Taxonomia, distribuição geográfica e fenologia. Supervisor	Mestrado em Biodiversidade e Recursos Genéticos Universidade do Porto, Faculdade de Ciências, Portugal
2005 - 2006	Distribuição, selecção de habitat e actividade do gato-bravo (Felis silvestris) no parque natural do vale do Guadiana. Supervisor of Pedro Seabra Monterroso	Mestrado em Biodiversidade e Recursos Genéticos (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2005 - 2006	Natural hybridization between the Iberian hare (Lepus granatensis) and the brown hare (L. europaeus) in northern Iberian Peninsula. Supervisor of Helder Freitas	Mestrado em Biodiversidade e Recursos Genéticos. (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2004 - 2005	Single nucleotide polymorphism identification in partridge (Alectoris sp) and quail (Coturnix coturnix). Its application to detect hybridisation with exotic species or domestic forms. Supervisor of Ângela Maria Oliveira Ribeiro	Mestrado em Biodiversidade e Recursos Genéticos (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2004 - 2005	Analysis of hybridization between wild and domestic cat in Portugal: implications for conservation. Supervisor of Rita Isabel Ribeiro Miranda de	Mestrado em Biodiversidade e Recursos Genéticos. Universidade do Porto, Faculdade de Ciências, Portugal
2004 - 2005	Caracterização genética do javali na Península Ibérica e das raças suínas Portuguesas, Bísara e Alentejana. Variabilidade genética ao nível do DNA mitocondrial e dos genes da cor da pelagem MC1R e KIT. Supervisor of Iris Pinheiro	Mestrado em Biodiversidade e Recursos Genéticos. Universidade do Porto, Faculdade de Ciências, Portugal
2001 - 2003	Avaliação do impacto da implementação de medidas de gestão do habitat em populações de coelho-bravo (Oryctolagus cuniculus algirus) no Parque Natural do Sudoeste Alentejano e Costa Vicentina Supervisor of Catarina Manuel Andrade de Campos Ferreira	Mestrado em Ecologia Aplicada (Master) Universidade do Porto, Faculdade de Ciências, Portugal
2001 - 2002	Ecologia de Lebre-ibérica (Lepus granatensis) num ecossistema de montanha no Parque Natural da Serra da Estrela. Supervisor of Joana Maria Jorge Pereira de	Mestrado em Ecologia Aplicada (Master) Universidade do Porto, Faculdade de Ciências, Portugal

Event organisation

	Event name Type of event (Role)	Institution / Organization
2016/05/01 - 2016/05/04	Congenomics. Final Simposium of the International Netlwork on Conservation Genomics (2016 - 2016) Conference	CIBIO/InBIO Associate Lab, University of Porto, Portugal
2004/07/26 - 2004/07/31	2nd World Lagomorph Conference (2004 - 2004) Congress

Jury of academic degree

	Topic Role	Candidate name (Type of degree) Institution / Organization
2023/12/04	Rediscovering Angolan Biodiversity: Patterns and regulation processes underlying large mammal community structure across South Angola President of the jury	Luís Filipe Pinho Rocha (PhD) Universidade do Porto, Faculdade de Ciências, Portugal
2023/11/10	Inferring evolutionary trends in Southern African geckos: from wide to local perspectives. President of the jury	Javier Lobon Rovira (PhD) Universidade do Porto, Faculdade de Ciências, Portugal
2023/11/06	Influence of landscape and social dynamics on grey wolf population genetics and demography President of the jury	Maria Carolina Pacheco de Freitas (PhD) Universidade do Porto, Faculdade de Ciências, Portugal
2023/07/21	Functional ecology of the associations between form and performance in scorpions. President of the jury	Pedro Jorge Lobo Martins Coelho (PhD) Universidade do Porto, Faculdade de Ciências, Portugal
2023/02/02	A genome-wide perspective on the evolutionary trajectory of wolves in human-dominated landscapes President of the jury	Diana Carina da Costa Lobo (PhD) Universidade do Porto, Faculdade de Ciências, Portugal
2019	President over 50 Juries of the Master in Biodiversity, Genetics and Evolution President of the jury	Mestrado em Biodiversidade, Genética e Evolução (Master) Faculdade de Ciências da Universidade do Porto, Portugal
2018	Molecular approaches to the conservation and management of Bengal tiger in Nepal	Dibesh Karmacharya (PhD) Griffith University - Gold Coast Campus, Australia
2018	Distribución, cuantificación y caracterisación de genes de virulencia de Escherichia coli en reservorios animals, humanos y medioambientales (Thesis) Main arguer	Ana Isabel Vela Alonso (PhD) IREC, University of Castilla-la –Mancha, Spain
2018	Venenos e envenamentos por serpentes de imprtância médica em Angola (Thesis) Main arguer	Paula Regina Simões de Oliveira (PhD) Universidade do Porto Faculdade de Farmácia, Portugal
2018	Evolutionary history of sympatric rainbow skinks from the Australian Monssonal tropics (Thesis) Main arguer	Ana Catarina Afonso (PhD) Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2017	Stress raeaction, habitat use and the consequences of climate change on mountain hare, Lepus timidus, in the Alps Thesis Member	Maik Rhenus (PhD) University of Natural Resources and Life Science (BOKU), Austria
2013	Daily activity pattern, space use and habitat preferences of the European hare (Lepus europaeus) Thesis Member	Stéphanie C. Schai-Braun (PhD) Universität für Bodenkultur Wien Department für Integrative Biologie und Biodiversitätsforschung, Austria
2013	Environment and biodiversity: a multidisciplinary approach to dynamic patterns in the Iberian Peninsula Thesis Member	Faculdade de Ciências da Universidade do Porto (PhD)
2012	Landscape connectivity and fragmentation: the case of Mediterranean amphibians inhabiting temporary pond networks (Thesis) Main arguer	Mirjam Susanne van de Vliet (PhD) Universidade do Algarve Centro de Investigação Tecnológica do Algarve, Portugal
2012	Colonisation history of a ubiquitous invasive, the house mouse (Mus musculus domesticus): a global, continental and insular perspective (Thesis) Main arguer	Sofia Isabel Vieira Gabriel (PhD) Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2010	Persistence and coexistence of spatially structured populations in heterogeneous environments: the case of Cabrera and water voles in mediterranean farmland (Thesis) Main arguer	Ricardo Miguel Miguéns Cardoso Cadete Pita (PhD) Universidade de Évora, Portugal
2010	Factors influencing the distribution of the lusitanian and the mediterranean pine voles (Microtus lusitanicus and M. duodecimcostatus) in Portugal: a multidisciplinar approach Thesis Member	Sara Maria Lopes dos Santos (PhD) Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2010	The rabbit as an agricultural pest in its native distribution range (Thesis) Main arguer	Isabel Catalán Barrio (PhD) IREC, University of Castilla-la –Mancha, Spain
2008	Reticulate evolution among hares (Lepus spp.): the combined effects of glacial cycles, demography and natural selection inferred from molecular variation Thesis Member	José Fernando Melo-Ferreira (PhD)
2008	Population ecology of two species of cave-Dwelling bats (Miniopterus schreibersii and Myotis myotis) (Thesis) Main arguer	Maria Luísa Sequeira Viana Rodrigues (PhD) Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal Université de Montpellier, France
2008	Restauración de las poblaciones de conejo de monte y mejora de la gestión para su conservación (Thesis) Main arguer	Carlos Rouco Zufiaurre (PhD) IREC, University of Castilla-la –Mancha, Spain
2007	The Madeira house mouse chromosomal system: a multidisciplinary approach to study mechanisms involved in its evolution (Thesis) Main arguer	Ana Claudia Filipe de Carvalho Nunes Oliveira (PhD) Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2007	El efecto de los depradadores en el comportamento y en la respuesta fisiológica de estrés en el conejo (Oryctolagus cuniculus (Thesis) Main arguer	Raquel Monclús Burgoa (PhD) University Autonomous of Madrid, Spain
2007	Filogenia molecular de las liebres ibéricas (Lepus castroviejoi, Lepus europaeus y Lepus granatensis), a partir del ADN mitocondrial (Thesis) Main arguer	María Jesús Sanz Martín (PhD) Universidad de Alcalá de Henares, Spain
2006	Evolução dos genes da cadeia a (HBA) e da cadeia ß (HBB) da hemoglobina do coelho (Oryctolagus cuniculus)	Maria Rita Monteiro de Lencastre Campos (PhD) Faculdade de Ciências da Universidade do Porto, Portugal
2006	Gestión Cinegética e Conservación del Conejo de Monte (Thesis) Main arguer	Vicente Piorno Gonzaléz (PhD) Universidade de Vigo, Spain

Association member

	Society Organization name	Role
2006 - Current	World Lagomorph Society	President

Conference scientific committee

	Conference name	Conference host
2019/07/01 - 2019/07/04	Congreso Ibérico de Ciencia Aplicada a los Recursos Cinegéticos /Iberian Congress of Applied Science to Game Species Management	IREC, University of Castilla La Mancha
2015/08/17 - 2015/08/20	Workshop on Lagomorph Biology, European Congress of Mammalogy ECM7	University of Stockholm
2011/11/24 - 2011/11/25	II Congresso Internacional sobre el conejo de monte	Toledo, Spain
2008/11/10 - 2008/11/13	3rd World Lagomorph Conference,	University of Morellia, Mexico

Course / Discipline taught

	Academic session	Degree Subject (Type)	Institution / Organization
2023/05/01 - Current	Director of the PhD Program in Biodiversity, Genetics and Evolution BIODIV, at the Faculty of Sciences, University of Porto, in association with the University of Lisbon	Biodiversidade, Genética e Evolução (Doutoramento)	Universidade do Porto, Faculdade de Ciências, Portugal
2014/03 - Current	Molecular Genetics and Cytogenetics	Biology (Licenciatura)	Universidade do Porto Faculdade de Ciências, Portugal
2013/03 - Current	Management and Conservation of Birds and Mammals	Biology (Licenciatura)	Universidade do Porto, Faculdade de Ciências, Portugal
2006 - Current	Conservation Genetics	Conservation Genetics (Mestrado)	Universidade do Porto Faculdade de Ciências, Portugal

Journal scientific committee

	Journal title (ISSN)	Publisher
2012 - Current	European Journal of Wildlife Research (1439-0574)	Springer-Verlag