Ana Varela Coelho (BF17-0EAB-62FB)

Curriculum Vitae

Ana Varela Coelho

Ana Varela Coelho has started her academic career in 1990 as a professor assistant at the University of Évora, Portugal. After her PhD in Biochemistry (1998), she has become an assistant professor at the same University. In 2002 she moved to Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa as an invited assistant professor, where she was contracted as assistant researcher in 2010 (with tenure since 2017). She implemented the Mass Spectrometry Facility, which she coordinated till 2013. AV Coelho develops research using integrated omics approaches applied to non-model organisms, in particular to human and veterinary pathogenic microorganisms and to marine organisms, currently as Head of the Proteomics of Non-Model Organisms Lab (2015-) at ITQB-NOVA. More recently, she has also focused on the discover of clinical biomarkers for diagnosis and prognosis of infectious and rheumatic diseases. Moreover, she collaborates with M Miragaia (Pi of the Bacterial Evolution and Molecular Epidemiology Lab (ITQB NOVA) to study Staphylococcus epidermidis infection and commensalism molecular mechanisms envisaging the development of selective antimicrobials for the treatment and prevention of nosocomial infections. She as published 152 papers (102 in Q1), 7 book chapters, presented >50 oral presentations/invited lectures. h-index=37, with a total of 3917 citations. Is member of IJMS (MDPI) and Marine Biology (Frontiers) Editorial Boards, part of Scientific Evaluation Panels of FCT (Portugal), COST Actions, EISMEA and REA (European Commission). Worked as European Partner of the FP7-REGPOT One Health approach to integrate Guadeloupe research on vector-borne and emerging diseases in the ERA, as European Coordinator of ERA-NET TBomics - an OMICS approach for diagnosing tuberculosis, New INDIGO Partnership Prog Biotech Applied to Human Health, was PL of 8 projects and PI of other 22 (funding: 1,5M). Co-founded (2009) the Portuguese Proteomics Association - Rede ProCura, official representative of Portugal at EuPA and is its vice-president since 2019. HUPO councillor in representation of European Proteomic Association (EUPA) (2019-) AV Coelho is the responsible for the Bioanalytical Procedures curricular unit of the Master Course on Biochemistry for Health and member of its Pedagogical Council. She has supervised, 3 Assistant Researchers, 10 Post-Doc, 9 PhD, 19 Master thesis and 20 Visiting Researchers.

Read full resume ↓

Identification

Personal identification

Full name: Ana Varela Coelho

Citation names

Varela Coelho, Ana
Coelho, Ana
V Coelho, Ana
V Coelho, A
Coelho, A

Author identifiers

Ciência ID: BF17-0EAB-62FB
ORCID iD: 0000-0002-6143-4203
Researcher Id: O-3977-2014

Email addresses

varela@itqb.unl.pt (Professional)

Telephones

Telephone

214469462 (Professional)

Addresses

Instituto de Tecnologia Química e Biológica António Xavier (ITQB NOVA). Av República, 2780-157 O, Oeiras, Oeiras, Portugal (Professional)

Websites

https://www.itqb.unl.pt/research/biology/proteomics-of-non-model-organisms (Professional)

Knowledge fields

Natural sciences - Biological Sciences - Biochemistry

Languages

Language	Speaking	Reading	Writing	Listening	Peer-review
Portuguese (Mother tongue)
English	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)
French	Advanced (C1)	Advanced (C1)	Upper intermediate (B2)	Advanced (C1)	Upper intermediate (B2)
Spanish; Castilian	Advanced (C1)	Advanced (C1)	Intermediate (B1)	Advanced (C1)	Intermediate (B1)

Education

	Degree	Classification
1998 Concluded	Química (Doutoramento) Major in Biochemistry Universidade de Évora, Portugal "Determinação e Análise da Estrutura da Desulfoferrodoxina Isolada de Desulfovíbrio Desulfuricanas Atcc 27774" (THESIS/DISSERTATION)

Affiliation

Science

	Category Host institution	Employer
2010/12 - Current	Auxiliary Researcher (Research)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Teaching in Higher Education

	Category Host institution	Employer
2002/10 - 2010/12	Invited Assistant Professor (University Teacher)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

1998/04 - 2010/12	Assistant Professor (University Teacher)	Universidade de Évora, Portugal
	Universidade de Évora Departamento de Química, Portugal
1993 - 1998	Assistant (University Teacher)	Universidade de Évora, Portugal
	Universidade de Évora Departamento de Química, Portugal
1990/10 - 1993	Trainee Assistant (University Teacher)	Universidade de Évora, Portugal
	Universidade de Évora Departamento de Química, Portugal

Projects

Grant

	Designation	Funders
2022/05/01 - 2023/04/30	Genome-scale metabolic models for S. epidermidis 2020-952537 Principal investigator	Ongoing
2019 - 2021	Identification of putative bacterial targets for the development of precision antimicrobials against pathogenic S. epidermidis a strategy to prevent medical device associated infections Identification of putative bacterial targets Principal investigator	Fundação para a Ciência e a Tecnologia Concluded
2017/10/02 - 2021	Stem cells of marine/aquatic invertebrates: from basic research to innovative applications CA16203 Researcher	European Cooperation in Science and Technology Ongoing
2013 - 2016	EPIGENESIS - One Health approach to integrate Guadeloupe research on vector-borne and emerging diseases in the ERA from the characterization of emergence mechanisms to innovative approaches for prediction and control FP7-REGPOT-2012-2013-1 Other CIRAD, France	European Commission Concluded
2014 - 2015	Digging Label-free high resolution MS Transbio-SUDOE Principal investigator	Interreg Europe Concluded
2011 - 2015	Mass Spectrometry Imaging New Tools for Healthcare Research BM1104 Researcher	European Cooperation in Science and Technology Concluded
2010 - 2014	Biological adhesives from biology to biomimetics TD0906 Researcher	Concluded
2010 - 2014	Farm Animal Proteomics FA1002 Researcher	European Cooperation in Science and Technology
2012 - 2013	3to4: Converting C3 to C4 photosynthesis for sustainable agriculture info:eu-repo/grantAgreement/EC/FP7/289582/EU Researcher	European Commission Concluded
2012 - 2013	Identification of Rickettsiales Ehrlichia ruminantium outer membrane proteins using a proteomic strategy TC-04/12 Principal investigator	Fundação para a Ciência e a Tecnologia
2012 - 2013	Identification of Rickettsiales Ehrlichia ruminantium outer membrane proteins using a proteomic strategy TC-04/12	Fundação para a Ciência e a Tecnologia
2011 - 2012	Proteomic study of the cell mechanisms involved in the aggregation of yeast proteins E-36/11 Principal investigator	Fundação para a Ciência e a Tecnologia Concluded
2011 - 2012	Proteomic study of the cell mechanisms involved in the aggregation of yeast proteins E-36/11	Fundação para a Ciência e a Tecnologia

Contract

	Designation	Funders
2017/01/01 - 2020/12/31	An Omics Network to Prevent and Control Infectious Diseases and Antimicrobial Resistance. SAICTPAC/0015/2015 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Fundação Calouste Gulbenkian, Portugal Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2013/08/18 - 2016/12/31	TBomics AN OMICS APPROACH FOR DIAGNOSING TUBERCULOSIS New-INDIGO/0001/2012 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2013/07/01 - 2016/03/31	Understanding echinoderms outstanding nervous system regeneration capabilities using a phosphoproteomics approach PTDC/MAR-BIO/2174/2012 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2013/06/01 - 2016/03/01	Immunogenicity of vaccine candidate antigens from Staphylococcus pseudintermedius in Canis canis PTDC/CVT-EPI/4345/2012 Universidade de Lisboa Centro de Investigação Interdisciplinar em Sanidade Animal, Portugal Universidade de Lisboa Faculdade de Medicina Veterinária, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2013/03/01 - 2015/08/31	Modulação da Via Apoptótica Mitocondrial para Estimular a Diferenciação Neural PTDC/BIM-MED/0251/2012 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2012/02/01 - 2015/07/31	Borrow some Boron: New Strategies for Protein Modification! PTDC/QUI-QUI/118315/2010 Universidade de Lisboa Faculdade de Farmácia, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2011/04/01 - 2014/09/30	Identificação dos mecanismos envolvidos no enchimento do grão de Phaseolus vulgaris L. em deficit hídrico. PTDC/AGR-GPL/110244/2009 Universidade de Lisboa, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2011/03/15 - 2014/09/14	Toxicidade hepática em indivíduos infectados pelo VIH expostos à nevirapina PTDC/SAU-TOX/111663/2009 Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal Universidade Nova de Lisboa Centro de Estudos de Doenças Crónicas, Portugal Universidade de Lisboa Instituto Superior Técnico, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Centro Hospitalar de Lisboa Central EPE, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2011/03/01 - 2014/07/31	ER_TRANSPROT - Análise do proteoma de Ehrlichia ruminantium: uma análise complementar à transcriptómica para o estudo da patogenese e desenvolvimento de vacinas para a Cowdriose PTDC/CVT/114118/2009 Instituto de Biologia Experimental e Tecnológica, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/04/01 - 2013/09/30	Integration of transcriptomic, proteomic and metabolomics profiles to understand the role of T6P in the water deficit response and recovery in Medicago truncatula PTDC/AGR-GPL/099866/2008 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/04/01 - 2013/09/30	Integration of transcriptomic, proteomic and metabolomics profiles to understand the role of T6P in the water deficit response and recovery in Medicago truncatula PTDC/AGR-GPL/099866/2008 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/03/01 - 2013/08/31	Sustainable membrane bioreactors for advanced wastewater treatment: a molecular approach PTDC/EBB-EBI/098862/2008 Instituto de Biologia Experimental e Tecnológica, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/03/01 - 2013/08/31	Sustainable membrane bioreactors for advanced wastewater treatment: a molecular approach PTDC/EBB-EBI/098862/2008 Instituto de Biologia Experimental e Tecnológica, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/02/01 - 2013/07/31	Molecular characterization of organ regeneration in starfish - a proteomic approach toward the discovery of new regeneration factors PTDC/MAR/104058/2008 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/02/01 - 2013/07/31	Molecular characterization of organ regeneration in starfish - a proteomic approach toward the discovery of new regeneration factors PTDC/MAR/104058/2008 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/01/01 - 2013/06/30	Investigação estrutural e funcional de NADH:quinona oxidoredutases do tipo II. PTDC/BIA-PRO/100288/2008 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/01/01 - 2013/06/30	Plant responses to trace element toxicity: cellular mechanisms for detoxification and tolerance PTDC/AGR-AAM/102821/2008 Universidade de Lisboa Centro de Investigação em Agronomia Alimentos Ambiente e Paisagem, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/01/01 - 2013/06/30	Plant responses to trace element toxicity: cellular mechanisms for detoxification and tolerance PTDC/AGR-AAM/102821/2008 Universidade de Lisboa Centro de Investigação em Agronomia Alimentos Ambiente e Paisagem, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2008/01/02 - 2011/12/31	Protein glycation and transthyretin amyloidogenesis in yeast: A model system of neurodegenerative amyloid diseases PTDC/QUI/70610/2006 Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal Universidade de Lisboa Centro de Química e Bioquímica, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Egas Moniz Cooperativa de Ensino Superior CRL, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2008/01/02 - 2011/12/31	Protein glycation and transthyretin amyloidogenesis in yeast: A model system of neurodegenerative amyloid diseases PTDC/QUI/70610/2006 Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal Universidade de Lisboa Centro de Química e Bioquímica, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Egas Moniz Cooperativa de Ensino Superior CRL, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2008/01/01 - 2011/09/30	Produção biológica de hidrogénio - estudo de uma hidrogenase bacteriana de elevada actividade resistente ao oxigénio PTDC/BIA-PRO/70429/2006 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2008/04/01 - 2011/03/31	Investigating the energy transduction Q-cycle mechanism in complexes of respiratory chains PTDC/BIA-PRO/66557/2006 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2008/04/01 - 2011/03/31	Investigating the energy transduction Q-cycle mechanism in complexes of respiratory chains PTDC/BIA-PRO/66557/2006 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2008/01/01 - 2011/03/31	BIOSEAGLUE - Caracterização dos adesivos temporários dos ouriços do mar por espectrometria de massa. PPCDT/DG/MAR/82012/2006 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2008/01/01 - 2011/03/31	BIOSEAGLUE - Characterization of sea urchins temporary adhesives by mass spectrometry-based proteomics. PPCDT/DG/MAR/82012/2006 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2007/09/01 - 2011/02/28	Enzymatic Degradation and Synthesis of Azo and Antraquinonic Dyes PTDC/BIO/72108/2006 Instituto de Biologia Experimental e Tecnológica, Portugal Universidade de Lisboa Instituto Superior Técnico, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2007/09/01 - 2011/02/28	Enzymatic Degradation and Synthesis of Azo and Antraquinonic Dyes PTDC/BIO/72108/2006 Instituto de Biologia Experimental e Tecnológica, Portugal Universidade de Lisboa Instituto Superior Técnico, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2007/11/12 - 2010/12/31	Compreender a respiração de sulfato a nível molecular: estudos sobre dois complexos membranares conservados PTDC/QUI/68368/2006 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2005/10/01 - 2008/11/30	Proteomics of Chronic Lung Diseases Leading to Biomarkers and Therapeutic Target Discovery POCI/SAU-MMO/56163/2004 Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2005/10/01 - 2008/11/30	Proteomics of Chronic Lung Diseases Leading to Biomarkers and Therapeutic Target Discovery POCI/SAU-MMO/56163/2004 Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2005/08/01 - 2008/06/30	Mould proteome regulation by substrate bioavailability: depolymerising enzymes likely to alter biopolymer nanostructure POCI/QUI/56229/2004 Instituto de Biologia Experimental e Tecnológica, Portugal Universidade de Aveiro, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2005/08/01 - 2008/06/30	Mould proteome regulation by substrate bioavailability: depolymerising enzymes likely to alter biopolymer nanostructure POCI/QUI/56229/2004 Instituto de Biologia Experimental e Tecnológica, Portugal Universidade de Aveiro, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2005/05/01 - 2007/12/31	Genetics, Stoicheometry and Kinetics of Multiple Protein Assembly: the case for a Rotavirus Like Particle POCI/BIO/55975/2004 Instituto de Biologia Experimental e Tecnológica, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2005/05/01 - 2007/12/31	Genetics, Stoicheometry and Kinetics of Multiple Protein Assembly: the case for a Rotavirus Like Particle POCI/BIO/55975/2004 Instituto de Biologia Experimental e Tecnológica, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2005/09/01 - 2007/11/30	Gene expression changes during hepatitis delta virus infection. I. Analysis of the cellular proteome. POCI/SAU-IMI/55112/2004 Universidade Nova de Lisboa Instituto de Higiene e Medicina Tropical, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2005/09/01 - 2007/11/30	Gene expression changes during hepatitis delta virus infection. I. Analysis of the cellular proteome. POCI/SAU-IMI/55112/2004 Universidade Nova de Lisboa Instituto de Higiene e Medicina Tropical, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia Concluded

Outputs

Publications

Book chapter	Gomes LP; Silva CG; Armengaud J; Gaillard JG; Coelho AV ; Laidson Paes Gomes; Catarina Gouveia e Silva; et al. Corresponding author: Coelho AV. "Characterization of soluble cell-free coelomic fluid proteome from the starfish Marthasterias glacialis". In Whole body regeneration, edited by Blanchoud S; Galliot B, 1-20. Geneve, Switzerland: Springer, 2022. Published • 10.1007/978-1-0176-2171-4_31 Laires, Rita; Koci, Kamila; Pires, Elisabete; Franco, Catarina; Lamosa, Pedro; V., Ana. "Tandem MS and NMR: An Efficient Couple for the Characterization of Saponins". In Tandem Mass Spectrometry - Molecular Characterization. InTech, 2013. 10.5772/56477 Cunha, Celso; Coelho, Ana V.. "Comparative Proteome Analysis of a Human Liver Cell Line Stably Transfected with Hepatitis D Virus Full-Length cDNA". In Liver Proteomics, 205-225. Humana Press, 2012. 10.1007/978-1-61779-959-4_14 Soares, Renata; Pires, Elisabete; M., Andr; Santos, Romana; Gomes, Ricardo; Koi, Kamila; Ferraz, Catarina; Varela, Ana. "Tandem Mass Spectrometry of Peptides". In Tandem Mass Spectrometry - Applications and Principles. InTech, 2012. 10.5772/30938 Santos, R.; Hennebert, E.; Coelho, A.V.; Flammang, P.. "The echinoderm tube foot and its role in temporary underwater adhesion". In Functional, Surfaces in Biology. Springer, 2009. Published • 10.1007/978-1-4020-6695-5_2
Conference abstract	Silva, S.; Boross, P.; Soares, R.; Coelho, A.V.; Vilas Boas, L.; Bronze, M.R.. "Characterization of nüzhenide and related secoiridoids in Olea europea L. seeds using MALDI-TOF mass spectrometry". Paper presented in XXVIII International Horticultural Congress on Science and Horticulture for People (IHC2010), 2012. 10.17660/ActaHortic.2012.939.54
Conference poster	Morais, Elisabete; Miragaia, Maria; Gonçalves, Luis Gafeira; Varela Coelho, Ana. "Time series exometabolomics depict metabolic features of Staphylococcus epidermidis pathogenicity". Paper presented in Congress of Microbiology and Biotechnology 2023, 2023. Magalhães, Filipe ; Morais, Elisabete; Gonçalves, Luis Gafeira; Miragaia, Maria; Varela Coelho, Ana. "Differential antimicrobial activity of endogenous fatty acids in pathogenic/commensal Staphylococcus epidermidis". Paper presented in Congress of Microbiology and Biotechnology 2023, 2023. Gonçalves, Luis Gafeira; Morais, Elisabete; Santos, S; Jean, Armengaud; Miragaia, Maria; Varela Coelho, Ana. "Glycine betaine role in Staphylococcus epidermidis pH adaptation and pathogenicity". Paper presented in Congress of Microbiology and Biotechnology 2023, 2023. Costa, Vanessa G; Haddad, N; Gonçalves, Luis Gafeira; Varela Coelho, Ana; Cecilia M. Arraiano; Matos, Rute G. "Exploring the role of important exoribonucleases in the foodborne pathogen Campylobacter jejuni". Paper presented in Microbes & RNA 2023, 2023. Sousa, Joana R; Varela Coelho, Ana; Jean, Armengaud; Kielbasa, M; Diniz, Mário; Gaudêncio, Susana; Almeida, Maria Gabriela. "Next-generation Shotgun Proteomics of Marine-derived Actinomycetes". Paper presented in 6th Egas Moniz International Scientific Congress, 2023. Gonçalves, Luis Gafeira; Morais, Elisabete; Magalhães, Filipe ; Santos, S; Gomes, Laidson Paes; Armengaud, Jean; Zimmermann-Kogadeeva, M; et al. "Discovery of selective anti-microbials against Staphylococcus epidermidis pathogenic strains". Paper presented in SymbNET Metabolomics Workshop for Biologists, 2023. Morais, Elisabete; Bouchami, Ons; Gil, Ana; Santos,S; Armengaud, Jean; Miragaia, Maria; Gonçalves, Luis Gafeira; Varela Coelho, Ana. "Towards the discovery of specific antimicrobials against Staphylococcus epidermidis pathogenic strains". Paper presented in 12th Meeting PhD Students ITQB NOVA, 2023. Morais, Elisabete; Santos, S; Matveishina, E; Geissen,E-M; Jean, Armengaud; Miragaia, Maria; Zimmermann-Kogadeeva, M; Gonçalves, Luis Gafeira; Varela Coelho, Ana. "Metabolic modelling reveals pH-dependent differences in pathogenic and non-pathogenic Staphylococcus epidermidis strains". Paper presented in 34th ECCMID, 2023. Morais, Elisabete; Santos, S; Gomes, LP; Maria Miragaia (ITQB NOVA); Gonçalves, Luis Gafeira; Varela Coelho, Ana. "Comparative metabolomic study indicates a metabolic re-route of a pathogenic Staphylococcus epidermidis strain at blood pH". Paper presented in MICROBIOTEC’21, 2021. Santos, S; Gonçalves, Luis Gafeira; Gomes, Laidson; Maria Miragaia (ITQB NOVA); Jean, Armengaud; Varela Coelho, Ana. "Staphylococcus epidermidis molecular responses to pH changes during human infection – a multiomics approach". Paper presented in MICROBIOTEC’21, 2021. Fernandes, AF; Gonçalves, Luis Gafeira; Bento, Américo; Anjos, S; MANADAS, BRUNO; Barroso, C; Villar, M; et al. "Mass Spectrometry-based Proteomic and Metabolomic profiling of serum samples for discovery and validation of TB diagnostic biomarkers". Paper presented in MICROBIOTEC’21, 2021. Santos, S; Gonçalves, Luis Gafeira; Gomes, Laidson; Maria Miragaia (ITQB NOVA); Jean, Armengaud; Varela Coelho, Ana. "Characterization of biological and metabolic responses to pH changes in Staphylococcus epidermidis". Paper presented in HUPO 2021, 2021. Sobral, D; Fernandes, A F; Mashayekhi Sardoo, Atlas; Bernardes, M; Pinto, P; Santos, H; Lagoas-Gomes, João; et al. "Proteomic profiling of ankylosing spondylitis patients serum reveals biomarkers for therapeutic response prediction and associated mechanistic insights". Paper presented in HUPO 2021, 2021. Santos, S; Gonçalves, Luis Gafeira; Gomes, Laidson; Maria Miragaia (ITQB NOVA); Jean, Armengaud; Varela Coelho, Ana. "Characterization of biological and metabolic responses to pH changes in Staphylococcus epidermidis". Paper presented in HUPO 2021, 2021. Santos, S; Gonçalves, Luis Gafeira; Gomes, Laidson; Maria Miragaia (ITQB NOVA); Jean, Armengaud; Varela Coelho, Ana. "Characterization of biological and metabolic responses to pH changes in Staphylococcus epidermidis". Paper presented in HUPO 2021, 2021. Santos, RB; Nascimento, R; Varela Coelho, Ana; Figueiredo, Andreia. "Grapevine – downy mildew proteomics of the first hours of an incompatible interaction". Paper presented in XXI Congreso Sociedade Portuguesa de Bioquímica, 2021. Fernandes, AF; Gonçalves, Luis Gafeira; Bento, M; ANJOS, M; MANADAS, BRUNO; Barroso, C; Villar, M; et al. "Mass Spectrometry-based Proteomic and Metabolomic profiling of serum samples for discovery and validation of TB diagnostic biomarker". Paper presented in EMBO \| EMBL Symposium “Multiomics to Mechanisms: Challenges in Data Integration”, 2021. Fernandes, AF; Gonçalves, Luis Gafeira; Bento, M; Anjos, S; MANADAS, BRUNO; Barroso, C; Villar, M; et al. "Mass Spectrometry-based Proteomic and Metabolomic profiling of serum samples for discovery and validation of TB diagnostic biomarker". Paper presented in MSACL 2021, 2021. Sobral, D; Fernandes, AF; Mashayekhi Sardoo, Atlas; Bernardes, M; Pinto, P; Santos, H; Lagoas-Gomes, João; et al. "Proteomic profiling of ankylosing spondylitis patients serum reveals biomarkers for therapeutic response prediction and associated mechanistic insights". Paper presented in MSACL 2021, 2021. Fernandes, AF; Gonçalves, Luis Gafeira; Bento, M; Barroso, C; Villar, M; Macedo, R; Simoes, MJ; Varela Coelho, Ana. "Proteomic profiling of serum samples for discovery and validation of TB diagnostic biomarkers". Paper presented in Meeting for Young Scientists in Proteomics, 2021. Santos, S; Gonçalves, Luis Gafeira; Gomes, Laidson; Gaillard, Jean-Charles; Jean, Armengaud; Maria Miragaia (ITQB NOVA); Varela Coelho, Ana. "Staphylococcus epidermidis metabolism adapts to pH alterations: a proteomic and metabolomic study". Paper presented in Meeting for Young Scientists in Proteomics, 2021. Sobral, D; Fernandes,AF; Mashayekhi Sardoo, Atlas; Bernardes, M; Pinto, P; Santos, H; Gomes, JL; et al. "Molecular profiling of radiographic axial spondyloarthritis patients reveals an association between innate and adaptive cell populations and therapeutic response to adalimumab". Paper presented in EULAR 2021 Congress, 2021. Santos, S; Gonçalves, Luis Gafeira; Gomes, Laidson; Miragaia, Maria; Armengaud, Jean; Varela Coelho, Ana. "Staphylococcus epidermidis response to pH changes: a proteomic and metabolomic study". Paper presented in 10th GERMN biennial NMR meeting, 2021. Conde, R; Laires, R.; Gonçalves, Luis Gafeira; Rizvi, A; Barroso, C; Villar, M.; Macedo, R; et al. "Discovery of serum biomarkers for diagnosis of tuberculosis by NMR metabolomics including cross-validation with a second cohort". Paper presented in 10th GERMN biennial NMR meeting, 2021. Fernandes, AF; Sardoo, Atlas Mashayekhi; Bernardes, M; Pinto, P; Santos, H; Gomes, JL; Tavares-Costa, J; et al. "Protein biomarkers may differentiate responders and non-responders to Adalimumab, a tumour necrosis factor inhibitor, in ankylosing spondylitis (AS) patients - A Bioefficacy SpA Study". Paper presented in Annual Meeting of American College of Rheumatology, 2020. Caeiro, I; Simões, C; Carreira, L; Varela Coelho, Ana; Anjos, S; MANADAS, BRUNO; Jeronimo, E; Lamy, Elsa. "Changes in salivary proteome of goats induced by a diet supplemented with Cistus ladanifer L.—a preliminary study". Paper presented in ProteOviedo 2020, 2020. Fernandes, A F; Sardoo, Atlas Mashayekhi; Bernardes, M; Pinto, P; Santos, H; Gomes, J L; Tavares-Costa, J; et al. "Protein biomarkers may differentiate responders and non-responders to Adalimumab, a tumour necrosis factor inhibitor, in ankylosing spondylitis (AS) patients - A Bioefficacy Study". Paper presented in 12 Topics in Rheumatology, 2020. Varela Coelho, Ana. "Are circulating blood biomarkers for inflammatory rheumatic diseases gender-dependent?-Systematic review based on omics data". Paper presented in XXI Congresso Português de Reumatologia, 2019. Varela Coelho, Ana. "Are circulating blood biomarkers for inflammatory rheumatic diseases gender-dependent?-Systematic review based on omics data". Paper presented in EULAR Congress, 2019. Varela Coelho, Ana. "Are circulating blood biomarkers for inflammatory rheumatic diseases gender-dependent?-Systematic review based on omics data". Paper presented in XII Jornadas de Genética e Biotecnologia, 2019. Varela Coelho, Ana. "A metabolic shift dependent on fatty acid oxidation supports nuclear histone acetylation in proliferating neural stem cells". Paper presented in 11th International Meeting of Portuguese Society for Stem Cells and Cell Therapies, 2019. Varela Coelho, Ana. "Grapevine leaf proteome reveals specific adjustments leading Plasmopara viticola resistance". Paper presented in VI International Caparica Congresso n Analytical Proteomics, 2019. Varela Coelho, Ana. "The coelomic epithelium and coelomocytes of the starfish Marthasterias glacialis (Linneus, 1758) in non-regenerating arm-tip: microscopic anatomy and proteomics characterization". Paper presented in 2nd Congresso Nazionale Congiunto SITE - UZI – SIB, 2017. Varela Coelho, Ana. "Proteomics clues towards the understanding of pathogenesis in S. epidermidis". Paper presented in 27th European Congress of Clinical Microbiology and Infectious Diseases, 2017.
Journal article	Filipe Magalhães; Claúdia Andrade; Beatriz Simões; Fredi Brigham; Ruben Valente; Pedro Martinez; José Rino; Michela Sugni; Ana Varela Coelho. "Regeneration of starfish radial nerve cord restores animal mobility and unveils a new coelomocyte population". Cell and Tissue Research (2023): https://doi.org/10.1007/s00441-023-03818-x. 10.1007/s00441-023-03818-x Ana Filipa Fernandes; Luís Gafeira Gonçalves; Maria Bento; Sandra I. Anjo; Bruno Manadas; Clara Barroso; Miguel Villar; et al. "Mass Spectrometry-Based Proteomic and Metabolomic Profiling of Serum Samples for Discovery and Validation of Tuberculosis Diagnostic Biomarker Signature". International Journal of Molecular Sciences (2022): https://doi.org/10.3390/ijms232213733. 10.3390/ijms232213733 Gonçalves, Luis Gafeira; Santos, Susana; Gomes, Laidson Paes; Armengaud, Jean; Miragaia, Maria; Coelho, Ana Varela. "Skin-to-blood pH shift triggers metabolome and proteome global remodelling in Staphylococcus epidermidis". Frontiers in Microbiology 13 (2022): http://dx.doi.org/10.3389/fmicb.2022.1000737. Open access • Published • 10.3389/fmicb.2022.1000737 Guatelli, Silvia; Ferrario, Cinzia; Bonasoro, Francesco; Anjo, Sandra I.; Manadas, Bruno; Candia Carnevali, Maria Daniela; Varela Coelho, Ana; Sugni, Michela. "More than a simple epithelial layer: multifunctional role of echinoderm coelomic epithelium". Cell and Tissue Research 390 2 (2022): 207-227. http://dx.doi.org/10.1007/s00441-022-03678-x. Open access • 10.1007/s00441-022-03678-x Conde, R.; Laires, R.; Gonçalves, L.G.; Rizvi, A.; Barroso, C.; Villar, M.; Macedo, R.; et al. "Discovery of serum biomarkers for diagnosis of tuberculosis by NMR metabolomics including cross-validation with a second cohort". Biomedical Journal 45 4 (2022): 654-664. http://dx.doi.org/10.1016/j.bj.2021.07.006. 10.1016/j.bj.2021.07.006 Giovanna Romano; Mariana Almeida; Ana Coelho; Adele Cutignano; Luis G Gonçalves; Espen Hansen; Denis Khnykin; et al. "Biomaterials and Bioactive Natural Products from Marine Invertebrates: From Basic Research to Innovative Applications". Marine Drugs (2022): https://www.mdpi.com/1660-3397/20/4/219. 10.3390/md20040219 Martinez, P.; Ballarin, L.; Ereskovsky, A. V.; Gazave, E.; Hobmayer, B.; Manni, L.; Rottinger, E.; et al. "Articulating the stem cell niche paradigm through the lens of non-model aquatic invertebrates". BMC Biology 20 1 (2022): http://dx.doi.org/10.1186/s12915-022-01230-5. Published • 10.1186/s12915-022-01230-5 Rosner, Amalia; Armengaud, Jean; Ballarin, Loriano; Barnay-Verdier, Stéphanie; Cima, Francesca; Coelho, Ana Varela; Domart-Coulon, Isabelle; et al. "Stem cells of aquatic invertebrates as an advanced tool for assessing ecotoxicological impacts". Science of The Total Environment 771 (2021): 144565. http://dx.doi.org/10.1016/j.scitotenv.2020.144565. Published • 10.1016/j.scitotenv.2020.144565 Isabel Marcelino; Philippe Holzmuller; Ana Coelho; Gabriel Mazzucchelli; Bernard Fernandez; Nathalie Vachiéry. "Revisiting Ehrlichia ruminantium Replication Cycle Using Proteomics: The Host and the Bacterium Perspectives". Microorganisms 9 6 (2021): 1144-1144. https://doi.org/10.3390/microorganisms9061144. 10.3390/microorganisms9061144 Andrade, Claúdia; Oliveira, Bárbara; Guatelli, Silvia; Martinez, Pedro; Simões, Beatriz; Bispo, Claúdia; Ferrario, Cinzia; et al. "Characterization of Coelomic Fluid Cell Types in the Starfish Marthasterias glacialis Using a Flow Cytometry/Imaging Combined Approach". Frontiers in Immunology 12 (2021): http://dx.doi.org/10.3389/fimmu.2021.641664. 10.3389/fimmu.2021.641664 Rita B. Santos; Rui Nascimento; Ana V. Coelho; Andreia Figueiredo. "Grapevine–Downy Mildew Rendezvous: Proteome Analysis of the First Hours of an Incompatible Interaction". Plants 9 11 (2020): 1498-1498. https://doi.org/10.3390/plants9111498. 10.3390/plants9111498 Lucena, S.; Coelho, A.V.; Muñoz-Prieto, A.; Anjo, S.I.; Manadas, B.; Capela e Silva, F.; Lamy, E.; Tvarijonaviciute, A.. "Changes in the salivary proteome of beagle dogs after weight loss". Domestic Animal Endocrinology 72 (2020): 106474. http://dx.doi.org/10.1016/j.domaniend.2020.106474. 10.1016/j.domaniend.2020.106474 Albors Vaquer, A; Rizvi, A; Matzapetakis, M.; Lamosa, Pedro; Varela Coelho, Ana; Patel, A.B.; Mande, S.C.; et al. "Active and prospective latent tuberculosis are associated with different metabolomic profiles: clinical potential for the identification of rapid and non-invasive biomarkers". Emerging Microbes & Infections 9 1 (2020): 1131-1139. http://dx.doi.org/10.1080/22221751.2020.1760734. In press • 10.1080/22221751.2020.1760734 Varela Coelho, Ana. "Metabolic repression of a long-chain fatty acid oxidation-associated enzyme supports nuclear histone acetylation in proliferating neural stem cells". (2020): In press Gomes, L.; Laires, R.; Marques, V.; Brigham, F.; Lamosa, P.; Gafeira, L.; Coelho, A. V.. "Identification and relative quantification of asterosaponins isolated from Marthasterias glacialis coelomic fluid during arm-tip/radial nerve cord regeneration". Invertebrate Survival Journal (2020): https://publons.com/publon/42103380/. Fernandes, Marta B.; Costa, Marcia; Ribeiro, Maria Filipe; Siquenique, Sonia; Sa Santos, Sonia; Martins, Joana; Coelho, Ana V.; et al. "Reprogramming of Lipid Metabolism as a New Driving Force Behind Tauroursodeoxycholic Acid-Induced Neural Stem Cell Proliferation". Frontiers in Cell and Developmental Biology (2020): https://publons.com/publon/37851903/. 10.3389/FCELL.2020.00335 Fernandes, Ana; Sardoo, Atlas Mashayekhi; Bernardes, Miguel; Pinto, Patricia; Santos, Helena; Gomes, Joao Lagoas; Tavares-Costa, Jose; et al. "Protein Biomarkers May Differentiate Responders and Non-Responders to Adalimumab, a Tumour Necrosis Factor Inhibitor, in Ankylosing Spondylitis Patients - The Bioefficacy SpA Study". Arthritis & Rheumatology (2020): https://publons.com/publon/42103373/. Simoes, B.; Oliveira, B.; Guatelli, S.; Sugni, M.; Zilhao, R.; Coelho, A. V.; Varela Coelho, Ana. "Dynamics of circulating coelomocytes populations during starfish regeneration". Invertebrate Survival Journal (2020): https://publons.com/publon/31273630/. Laidson P. Gomes; Sandra I. Anjo; Bruno Manadas; Ana V. Coelho; Vania M. F. Paschoalin. "Proteomic Analyses Reveal New Insights on the Antimicrobial Mechanisms of Chitosan Biopolymers and Their Nanosized Particles against Escherichia coli". International Journal of Molecular Sciences 21 1 (2019): 225-225. https://doi.org/10.3390/ijms21010225. 10.3390/ijms21010225 Marques, A T; Anjos, S I; Bhide, M; Varela Coelho, Ana; MANADAS, BRUNO; Lecchi, C; Grilli, G; Ceciani, F. "Changes in the intestinal mucosal proteome of turkeys (Meleagris gallopavo) infected with haemorrhagic enteritis virus". Veterinary Immunology and Immunopathology (2019): http://dx.doi.org/10.1016/j.vetimm.2019.06.001. 10.1016/j.vetimm.2019.06.001 Figueiredo, Andreia; Sebastiana, Mónica; Martins, Joana; Monteiro, Filipa; Coelho, Ana V.; Pais, Maria S.; Figueiredo,Andreia; et al. "Early events of grapevine resistance towards downy mildew by a systems biology approach". (2019): https://revistas.rcaap.pt/index.php/rca/article/view/16902. Fernandes, Ana Filipa; Sardoo, Atlas; dos Santos, Fernando Pimentel; Coelho, Ana Varela. "ARE CIRCULATING BLOOD BIOMARKERS FOR INFLAMMATORY RHEUMATIC DISEASES GENDER-DEPENDENT? - SYSTEMATIC REVIEW BASED ON OMICS DATA". Annals of the Rheumatic Diseases (2019): https://publons.com/publon/32700430/. 10.1136/ANNRHEUMDIS-2019-EULAR.8161 Lucena, Sonia; Coelho, Ana Varela; Anjo, Sandra I.; Manadas, Bruno; Mrljak, Vladimir; Capela e Silva, Fernando; Lamy, Elsa; Tvarijonaviciute, Asta. "Comparative proteomic analysis of saliva from dogs with and without obesity-related metabolic dysfuntion". Journal of Proteomics (2019): https://publons.com/publon/26202342/. 10.1016/J.JPROT.2019.04.010 Ballarin, Loriano; Rinkevich, Baruch; Bartscherer, Kerstin; Burzynski, Artur; Cambier, Sebastien; Cammarata, Matteo; Domart-Coulon, Isabelle; et al. "Maristem-Stem Cells of Marine/Aquatic Invertebrates: From Basic Research to Innovative Applications". Sustainability (2018): http://hdl.handle.net/10362/67794. https://doi.org/10.3390/su10020526 Lucena, Sonia; Coelho, Ana, V; Capela-Silva, Fernando; Tvarijonaviciute, Asta; Lamy, Elsa; Molecular, Structural and Cellular Microbiology (MOSTMICRO); Instituto de Tecnologia Química e Biológica António Xavier (ITQB); et al. "The Effect of Breed, Gender, and Acid Stimulation in Dog Saliva Proteome". BioMed Research International 2018 (2018): 1-12. http://hdl.handle.net/10362/67610. https://doi.org/10.1155/2018/7456894 Ben Khadra, Yousra; Sugni, Michela; Ferrario, Cinzia; Bonasoro, Francesco; Varela Coelho, Ana; Martinez, Pedro; Candia Carnevali, Maria Daniela; Coelho, Ana Varela; Carnevali, Maria Daniela Candia. "An integrated view of asteroid regeneration: tissues, cells and molecules". Cell and Tissue Research 370 1 (2017): 13-28. http://dx.doi.org/10.1007/s00441-017-2589-9. 10.1007/s00441-017-2589-9 Sebastiana, M.; Martins, J.; Figueiredo, A.; Monteiro, F.; Sardans, J.; Peñuelas, J.; Silva, A.; et al. "Oak protein profile alterations upon root colonization by an ectomycorrhizal fungus". Mycorrhiza 27 2 (2017): 109-128. http://www.scopus.com/inward/record.url?eid=2-s2.0-84990837146&partnerID=MN8TOARS. 10.1007/s00572-016-0734-z Figueiredo, Andreia; Martins, Joana; Sebastiana, Monica; Guerreiro, Ana; Silva, Anabela; Matos, Ana Rita; Monteiro, Filipa; et al. "Specific adjustments in grapevine leaf proteome discriminating resistant and susceptible grapevine genotypes to Plasmopara viticola". Journal of Proteomics 152 (2017): 48-57. https://publons.com/publon/708127/. 10.1016/J.JPROT.2016.10.012 Gonçalves, N.P.; Gonçalves, P.; Magalhães, J.; Ventosa, M.; Coelho, A.V.; Saraiva, M.J.; Nádia Pereira Gonçalves; et al. "Tissue remodeling after interference RNA mediated knockdown of transthyretin in a familial amyloidotic polyneuropathy mouse model". Neurobiology of Aging 47 (2016): 91-101. http://www.scopus.com/inward/record.url?eid=2-s2.0-84983775600&partnerID=MN8TOARS. 10.1016/j.neurobiolaging.2016.07.020 Guerreiro, Joana F.; Marques, Maria Belém Sousa Sampaio; Soares, Renata; Coelho, Ana Varela; Leão, Cecília; Ludovico, Paula; Sá-Correia, Isabel. "Mitochondrial proteomics of the acetic acid – induced programmed cell death response in a highly tolerant Zygosaccharomyces bailii – derived hybrid strain". (2016): http://hdl.handle.net/1822/44842. 10.15698/mic2016.02.477 Natacha Couto; Joana Martins; Ana Mafalda Lourenço; Constança Pomba; Ana Varela Coelho. "Identification of vaccine candidate antigens of Staphylococcus pseudintermedius by whole proteome characterization and serological proteomic analyses". Journal of Proteomics (2016): https://publons.com/publon/9721402/. 10.1016/J.JPROT.2015.12.017 André M. Almeida; Rui G. Palhinhas; Tanya Kilminster; Timothy Scanlon; Sofia van Harten; John Milton; Dominique Blache; et al. "The Effect of Weight Loss on the Muscle Proteome in the Damara, Dorper and Australian Merino Ovine Breeds". Plos One 11 2 (2016): https://publons.com/publon/8050219/. 10.1371/JOURNAL.PONE.0146367 Lewis, Philip; Sheehan, David; Soares, Renata; Coelho, Ana Varela; O'Halloran, Ken D.. "Redox Remodeling Is Pivotal in Murine Diaphragm Muscle Adaptation to Chronic Sustained Hypoxia". American Journal of Respiratory Cell and Molecular Biology (2016): https://publons.com/publon/19201232/. 10.1165/RCMB.2015-0272OC Lewis, P.; Sheehan, D.; Soares, R.; Coelho, A.V.; O'Halloran, K.D.; Lewis, Philip; Sheehan, David; et al. "Chronic sustained hypoxia-induced redox remodeling causes contractile dysfunction in mouse sternohyoid muscle". Frontiers in Physiology 6 APR (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84930632751&partnerID=MN8TOARS. 10.3389/fphys.2015.00122 Moumène, A.; Marcelino, I.; Ventosa, M.; Gros, O.; Lefranc¸ois, T.; Vachiéry, N.; Meyer, D.F.; et al. "Proteomic profiling of the outer membrane fraction of the obligate intracellular bacterial pathogen Ehrlichia ruminantium". PLoS ONE 10 2 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84923364138&partnerID=MN8TOARS. 10.1371/journal.pone.0116758 Ilyas, S.; Rehman, A.; Coelho, A.V.; Sheehan, D.; Ilyas, Sidra; Rehman, Abdul; Coelho, Ana Varela; Sheehan, David. "Proteomic analysis of an environmental isolate of Rhodotorula mucilaginosa after arsenic and cadmium challenge: Identification of a protein expression signature for heavy metal exposure". Journal of Proteomics (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84964687151&partnerID=MN8TOARS. 10.1016/j.jprot.2016.04.012 Jaafar, S.N.T.; Coelho, A.V.; Sheehan, D.; Jaafar, Siti Nur Tahirah; Coelho, Ana Varela; Sheehan, David. "Redox proteomic analysis of mytilus edulis gills: Effects of the pharmaceutical diclofenac on a non-target organism". Drug Testing and Analysis 7 10 (2015): 957-966. http://www.scopus.com/inward/record.url?eid=2-s2.0-84943448313&partnerID=MN8TOARS. 10.1002/dta.1786 De Groot, N.S.; Gomes, R.A.; Villar-Pique, A.; Babu, M.M.; Coelho, A.V.; Ventura, S.; de Groot, Natalia Sanchez; et al. "Proteome response at the edge of protein aggregation". Open Biology 5 2 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84923683642&partnerID=MN8TOARS. 10.1098/rsob.140221 Rainville, L.-C.; Coelho, A.V.; Sheehan, D.. "Application of a redox-proteomics toolbox to daphnia magna challenged with model pro-oxidants copper and paraquat". Environmental Toxicology and Chemistry 34 1 (2015): 84-91. http://www.scopus.com/inward/record.url?eid=2-s2.0-84919626563&partnerID=MN8TOARS. 10.1002/etc.2761 Sellami, Badreddine; Khazri, Abdelhafidh; Louati, Hela; Dellali, Mohamed; Driss, Mouhamed Ridha; Aissa, Patricia; Mahmoudi, Ezzeddine; et al. "Effects of anthracene on filtration rates, antioxidant defense system, and redox proteomics in the Mediterranean clam Ruditapes decussatus (Mollusca: Bivalvia)". Environmental Science and Pollution Research 22 14 (2015): 10956-10968. https://publons.com/publon/11924850/. 10.1007/S11356-015-4328-7 Marian Madar; Elena Bencurova; Patrik Mlynarcik; André M. Almeida; Renata Soares; Katarina Bhide; Lucia Pulzova; et al. "Exploitation of complement regulatory proteins by Borrelia and Francisella". Molecular Omics 11 6 (2015): 1684-1695. https://publons.com/publon/11924851/. 10.1039/C5MB00027K Isabel Marcelino; Miguel Ventosa; Elisabete Pires; Markus Müller; Frédérique Lisacek; Thierry Lefrançois; Nathalie Vachiery; Ana Varela Coelho. "Comparative Proteomic Profiling of Ehrlichia ruminantium Pathogenic Strain and Its High-Passaged Attenuated Strain Reveals Virulence and Attenuation-Associated Proteins". Plos One (2015): https://publons.com/publon/3712022/. 10.1371/JOURNAL.PONE.0145328 da Costa, Goncalo; Ribeiro-Silva, Cristina; Ribeiro, Raquel; Gilberto, Samuel; Gomes, Ricardo A.; Ferreira, Antonio; Mateus, Elia; et al. "Transthyretin Amyloidosis: Chaperone Concentration Changes and Increased Proteolysis in the Pathway to Disease". Plos One (2015): https://publons.com/publon/11778207/. 10.1371/JOURNAL.PONE.0125392 Hernández-Castellano, L.E.; Almeida, A.M.; Ventosa, M.; Coelho, A.V.; Castro, N.; Argüello, A.. "The effect of colostrum intake on blood plasma proteome profile in newborn lambs: Low abundance proteins". BMC Veterinary Research 10 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84899483975&partnerID=MN8TOARS. 10.1186/1746-6148-10-85 Batista, A.R.; Gianni, D.; Ventosa, M.; Coelho, A.V.; Almeida, M.R.; Sena-Esteves, M.; Saraiva, M.J.; et al. "Gene therapy approach to FAP: In vivo influence of T119M in TTR deposition in a transgenic V30M mouse model". Gene Therapy 21 12 (2014): 1041-1050. http://www.scopus.com/inward/record.url?eid=2-s2.0-84927178650&partnerID=MN8TOARS. 10.1038/gt.2014.86 Cole, C.; Coelho, A.V.; James, R.H.; Connelly, D.; Sheehan, D.; Catherine Cole; Ana Varela Coelho; et al. "Proteomic responses to metal-induced oxidative stress in hydrothermal vent-living mussels, Bathymodiolus sp., on the Southwest Indian Ridge". Marine Environmental Research 96 (2014): 29-37. http://www.scopus.com/inward/record.url?eid=2-s2.0-84896545431&partnerID=MN8TOARS. 10.1016/j.marenvres.2013.09.003 Sellami, B.; Louati, H.; Dellali, M.; Aissa, P.; Mahmoudi, E.; Coelho, A.V.; Sheehan, D.; et al. "Effects of permethrin exposure on antioxidant enzymes and protein status in Mediterranean clams Ruditapes decussatus". Environmental Science and Pollution Research 21 6 (2014): 4461-4472. http://www.scopus.com/inward/record.url?eid=2-s2.0-84895890285&partnerID=MN8TOARS. 10.1007/s11356-013-2404-4 Cruz De Carvalho, R.; Bernardes Da Silva, A.; Soares, R.; Almeida, A.M.; Coelho, A.V.; Marques Da Silva, J.; Branquinho, C.; et al. "Differential proteomics of dehydration and rehydration in bryophytes: Evidence towards a common desiccation tolerance mechanism". Plant, Cell and Environment 37 7 (2014): 1499-1515. http://www.scopus.com/inward/record.url?eid=2-s2.0-84901836425&partnerID=MN8TOARS. 10.1111/pce.12266 Rainville, Louis-Charles; Carolan, Darragh; Varela, Ana Coelho; Doyle, Hugh; Sheehan, David. "Proteomic evaluation of citrate-coated silver nanoparticles toxicity in Daphnia magna". Analyst (2014): https://publons.com/publon/3972144/. 10.1039/C3AN02160B Jaimie-Leigh Jonker; Florence Abram; Elisabete Pires; Ana Varela Coelho; Ingo Grunwald; Anne Marie Power. "Adhesive Proteins of Stalked and Acorn Barnacles Display Homology with Low Sequence Similarities". Plos One (2014): https://publons.com/publon/11236923/. 10.1371/JOURNAL.PONE.0108902 Catarina Ferraz Franco; R. Santos; Ana Varela Coelho. "Proteolytic events are relevant cellular responses during nervous system regeneration of the starfish Marthasterias glacialis". Journal of Proteomics (2014): https://publons.com/publon/491325/. 10.1016/J.JPROT.2013.12.012 Coelho, D.S.; Cairrão, F.; Zeng, X.; Pires, E.; Coelho, A.V.; Ron, D.; Ryoo, H.D.; et al. "Xbp1-Independent Ire1 Signaling Is Required for Photoreceptor Differentiation and Rhabdomere Morphogenesis in Drosophila". Cell Reports 5 3 (2013): 791-801. http://www.scopus.com/inward/record.url?eid=2-s2.0-84887609926&partnerID=MN8TOARS. 10.1016/j.celrep.2013.09.046 Campos, A.; Puerto, M.; Prieto, A.; Cameán, A.; Almeida, A.M.; Coelho, A.V.; Vasconcelos, V.; et al. "Protein extraction and two-dimensional gel electrophoresis of proteins in the marine mussel Mytilus galloprovincialis: An important tool for protein expression studies, food quality and safety assessment". Journal of the Science of Food and Agriculture 93 7 (2013): 1779-1787. http://www.scopus.com/inward/record.url?eid=2-s2.0-84876313274&partnerID=MN8TOARS. 10.1002/jsfa.5977 Sebastiana, M.; Figueiredo, A.; Monteiro, F.; Martins, J.; Franco, C.; Coelho, A.V.; Vaz, F.; et al. "A possible approach for gel-based proteomic studies in recalcitrant woody plants". SpringerPlus 2 1 (2013): 1-16. http://www.scopus.com/inward/record.url?eid=2-s2.0-84878793462&partnerID=MN8TOARS. 10.1186/2193-1801-2-210 Santos, R.; Barreto, A.; Franco, C.; Coelho, A.V.; R. Santos; Ângela Barreto; Catarina Franco; Ana Varela Coelho. "Mapping sea urchins tube feet proteome - A unique hydraulic mechano-sensory adhesive organ". Journal of Proteomics 79 (2013): 100-113. http://www.scopus.com/inward/record.url?eid=2-s2.0-84872199761&partnerID=MN8TOARS. 10.1016/j.jprot.2012.12.004 Rainha, N.; Koci, K.; Coelho, A.V.; Lima, E.; Baptista, J.; Fernandes-Ferreira, M.; Rainha, Nuno; et al. "HPLC-UV-ESI-MS analysis of phenolic compounds and antioxidant properties of Hypericum undulatum shoot cultures and wild-growing plants". Phytochemistry 86 (2013): 83-91. http://www.scopus.com/inward/record.url?eid=2-s2.0-84872015499&partnerID=MN8TOARS. 10.1016/j.phytochem.2012.10.006 Mendes, M.; Pérez-Hernandez, D.; Vázquez, J.; Coelho, A.V.; Cunha, C.; Marta Mendes; Daniel Pérez-Hernandez; et al. "Proteomic changes in HEK-293 cells induced by hepatitis delta virus replication". Journal of Proteomics 89 (2013): 24-38. http://www.scopus.com/inward/record.url?eid=2-s2.0-84880100540&partnerID=MN8TOARS. 10.1016/j.jprot.2013.06.002 Franco, Catarina; Soares, Renata; Pires, Elisabete; Koci, Kamila; Almeida, André M.; Santos, Romana; Coelho, Ana Varela; et al. "Understanding regeneration through proteomics". Proteomics (2013): http://hdl.handle.net/10400.5/7180. 10.1002/pmic.201200397 Oliveira, Luís M. A.; Gomes, Ricardo A.; Yang, Dennis; Família, Carlos; Lages, Ana; Coelho, Ana V.; Murphy, Regina M.; et al. "Insights into the molecular mechanism of protein native-like aggregation upon methylglyoxal glycation". Biochimica et Biophysica Acta - Proteins and Proteomics 1834 6 (2013): 1010-1022. http://hdl.handle.net/10400.26/6831. 10.1016/j.bbapap.2012.12.001 Marcelino, I.; de Almeida, A.M.; Ventosa, M.; Pruneau, L.; Meyer, D.F.; Martinez, D.; Lefrançois, T.; et al. "Tick-borne diseases in cattle: Applications of proteomics to develop new generation vaccines". Journal of Proteomics 75 14 (2012): 4232-4250. http://www.scopus.com/inward/record.url?eid=2-s2.0-84863853432&partnerID=MN8TOARS. 10.1016/j.jprot.2012.03.026 Guerreiro, A.; Da Costa, G.; Gomes, R.A.; Ribeiro-Silva, C.; Gilberto, S.; Mateus, É.; Monteiro, E.; et al. "a-Synuclein aggregation in the saliva of familial transthyretin amyloidosis: A potential biomarker". Amyloid 19 2 (2012): 74-80. http://www.scopus.com/inward/record.url?eid=2-s2.0-84861591302&partnerID=MN8TOARS. 10.3109/13506129.2012.668500 Ribeiro, A.R.; Barbaglio, A.; Oliveira, M.J.; Santos, R.; Coelho, A.V.; Ribeiro, C.C.; Wilkie, I.C.; et al. "Correlations between the biochemistry and mechanical states of a sea-urchin ligament: A mutable collagenous structure". Biointerphases 7 1-4 (2012): 1-15. http://www.scopus.com/inward/record.url?eid=2-s2.0-84864082238&partnerID=MN8TOARS. 10.1007/s13758-012-0038-6 Rosado, T.; Bernardo, P.; Koci, K.; Coelho, A.V.; Robalo, M.P.; Martins, L.O.; Rosado, Tânia; et al. "Methyl syringate: An efficient phenolic mediator for bacterial and fungal laccases". Bioresource Technology 124 (2012): 371-378. http://www.scopus.com/inward/record.url?eid=2-s2.0-84867869530&partnerID=MN8TOARS. 10.1016/j.biortech.2012.08.023 Silva, A.F.; Carvalho, G.; Soares, R.; Coelho, A.V.; Crespo, M.T.B.; Silva, Ana F.; Carvalho, Gilda; et al. "Step-by-step strategy for protein enrichment and proteome characterisation of extracellular polymeric substances in wastewater treatment systems". Applied Microbiology and Biotechnology 95 3 (2012): 767-776. http://www.scopus.com/inward/record.url?eid=2-s2.0-84864590925&partnerID=MN8TOARS. 10.1007/s00253-012-4157-2 Cal, P.M.S.D.; Vicente, J.B.; Pires, E.; Coelho, A.V.; Veiros, L.F.; Cordeiro, C.; Gois, P.M.P.; et al. "Iminoboronates: A new strategy for reversible protein modification". Journal of the American Chemical Society 134 24 (2012): 10299-10305. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862525703&partnerID=MN8TOARS. 10.1021/ja303436y Marcelino, I.; de Almeida, A.M.; Brito, C.; Meyer, D.F.; Barreto, M.; Sheikboudou, C.; Franco, C.F.; et al. "Proteomic analyses of Ehrlichia ruminantium highlight differential expression of MAP1-family proteins". Veterinary Microbiology 156 3-4 (2012): 305-314. http://www.scopus.com/inward/record.url?eid=2-s2.0-84858746865&partnerID=MN8TOARS. 10.1016/j.vetmic.2011.11.022 Tedesco, S.; Jaafar, S.N.T.; Coelho, A.V.; Sheehan, D.. "Protein thiols as novel biomarkers in ecotoxicology: A case study of oxidative stress in Mytilus edulis sampled near a former industrial site in Cork Harbour, Ireland". Journal of Integrated OMICS 2 2 (2012): 39-47. http://www.scopus.com/inward/record.url?eid=2-s2.0-84895858317&partnerID=MN8TOARS. 10.5584/jiomics.v2i2.77 André M. Almeida; José R. Parreira; R. Santos; Ana Sofia Duque; Rita Francisco; Daniel F.A. Tomé; Cândido Pinto Ricardo; et al. "A proteomics study of the induction of somatic embryogenesis in Medicago truncatula using 2DE and MALDI-TOF/TOF". Physiologia Plantarum 146 2 (2012): 236-249. https://publons.com/publon/491330/. 10.1111/J.1399-3054.2012.01633.X Catarina F. Franco; Renata Soares; Elisabete Pires; R. Santos; Ana V. Coelho; Franco, C.F.; Soares, R.; et al. "Radial nerve cord protein phosphorylation dynamics during starfish arm tip wound healing events". Electrophoresis 33 24 (2012): 3764-3778. https://publons.com/publon/491334/. 10.1002/ELPS.201200274 Renata Soares; Catarina Franco; Elisabete Pires; Miguel Ventosa; Rui Palhinhas; Kamila Koci; André Martinho de Almeida; et al. "Mass spectrometry and animal science: Protein identification strategies and particularities of farm animal species". Journal of Proteomics 75 14 (2012): 4190-4206. https://publons.com/publon/4852884/. 10.1016/J.JPROT.2012.04.009 Gomes, Ricardo A.; Franco, Catarina; Da Costa, Goncalo; Planchon, Sebastien; Renaut, Jenny; Ribeiro, Raquel M.; Pinto, Francisco; et al. "The Proteome Response to Amyloid Protein Expression In Vivo". Plos One 7 11 (2012): https://publons.com/publon/221725/. 10.1371/JOURNAL.PONE.0050123 Ribeiro-Silva, C.; Gilberto, S.; Gomes, R.A.; Mateus, E.; Monteiro, E.; Barroso, E.; Coelho, A.V.; et al. "The relative amounts of plasma transthyretin forms in familial transthyretin amyloidosis: A quantitative analysis by Fourier transform ion-cyclotron resonance mass spectrometry". Amyloid 18 4 (2011): 191-199. http://www.scopus.com/inward/record.url?eid=2-s2.0-81255201286&partnerID=MN8TOARS. 10.3109/13506129.2011.614295 Puerto, M.; Campos, A.; Prieto, A.; Cameán, A.; Almeida, A.M.D.; Coelho, A.V.; Vasconcelos, V.; et al. "Differential protein expression in two bivalve species; Mytilus galloprovincialis and Corbicula fluminea; exposed to Cylindrospermopsis raciborskii cells". Aquatic Toxicology 101 1 (2011): 109-116. http://www.scopus.com/inward/record.url?eid=2-s2.0-78649908934&partnerID=MN8TOARS. 10.1016/j.aquatox.2010.09.009 Lamy, E.; Da Costa, G.; Santos, R.; Capelae Silva, F.; Potes, J.; Pereira, A.; Coelho, A.V.; et al. "Effect of condensed tannin ingestion in sheep and goat parotid saliva proteome". Journal of Animal Physiology and Animal Nutrition 95 3 (2011): 304-312. http://www.scopus.com/inward/record.url?eid=2-s2.0-79953737947&partnerID=MN8TOARS. 10.1111/j.1439-0396.2010.01055.x Franco, C.F.; Santos, R.; Coelho, A.V.; Catarina F. Franco; R. Santos; Ana V. Coelho. "Proteome characterization of sea star coelomocytes - The innate immune effector cells of echinoderms". Proteomics 11 17 (2011): 3587-3592. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051807647&partnerID=MN8TOARS. 10.1002/pmic.201000745 Oliveira, L.M.; Lages, A.; Gomes, R.A.; Neves, H.; Família, C.; Coelho, A.V.; Quintas, A.; et al. "Insulin glycation by methylglyoxal results in native-like aggregation and inhibition of fibril formation". BMC Biochemistry 12 1 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79961123141&partnerID=MN8TOARS. 10.1186/1471-2091-12-41 Mau, M.; de Almeida, A.M.; Coelho, A.V.; Südekum, K.-H.; Marcus Mau; André Martinho de Almeida; Ana Varela Coelho; Karl-Heinz Südekum. "First identification of tannin-binding proteins in saliva of papio hamadryas using MS/MS mass spectrometry". American Journal of Primatology 73 9 (2011): 896-902. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960559656&partnerID=MN8TOARS. 10.1002/ajp.20958 Franco, C.F.; Santos, R.; Coelho, A.V.; Catarina Ferraz Franco; R. Santos; Ana Varela Coelho. "Exploring the proteome of an echinoderm nervous system: 2-DE of the sea star radial nerve cord and the synaptosomal membranes subproteome". Proteomics 11 7 (2011): 1359-1364. http://www.scopus.com/inward/record.url?eid=2-s2.0-79953054035&partnerID=MN8TOARS. 10.1002/pmic.201000541 Elsa Lamy; Harshadrai Rawel; Florian J. Schweigert; Fernando Capela e Silva; Ana Ferreira; Ana Rodrigues Costa; Célia Antunes; et al. "The Effect of Tannins on Mediterranean Ruminant Ingestive Behavior: The Role of the Oral Cavity". Molecules (2011): https://publons.com/publon/2503234/. 10.3390/MOLECULES16042766 Ana Teresa Caldeira; J.M. Santos Arteiro; Ana V. Coelho; J. Carlos Roseiro; Caldeira, A.T.; Santos Arteiro, J.M.; Coelho, A.V.; Roseiro, J.C.. "Combined use of LC–ESI-MS and antifungal tests for rapid identification of bioactive lipopeptides produced by Bacillus amyloliquefaciens CCMI 1051". Process Biochemistry 46 9 (2011): 1738-1746. https://publons.com/publon/7241885/. 10.1016/J.PROCBIO.2011.05.016 Gonçalo da Costa; Ricardo A. Gomes; Ana Guerreiro; Élia Mateus; Estela Monteiro; Eduardo Barroso; Ana V. Coelho; et al. "Beyond Genetic Factors in Familial Amyloidotic Polyneuropathy: Protein Glycation and the Loss of Fibrinogen's Chaperone Activity". Plos One 6 10 (2011): https://publons.com/publon/11491363/. 10.1371/JOURNAL.PONE.0024850 Almeida, A.M.; van Harten, S.; Campos, A.; Coelho, A.V.; Cardoso, L.A.; A. M. Almeida; S. van Harten; et al. "The effect of weight loss on protein profiles of gastrocnemius muscle in rabbits: A study using 1D electrophoresis and peptide mass fingerprinting". Journal of Animal Physiology and Animal Nutrition 94 2 (2010): 174-185. http://www.scopus.com/inward/record.url?eid=2-s2.0-77950803108&partnerID=MN8TOARS. 10.1111/j.1439-0396.2008.00897.x Lamy, E.; Graça, G.; da Costa, G.; Franco, C.; e Silva, F.C.; Baptista, E.S.; Coelho, A.V.. "Changes in mouse whole saliva soluble proteome induced by tannin-enriched diet". Proteome Science 8 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-78650063468&partnerID=MN8TOARS. 10.1186/1477-5956-8-65 da Costa, G.; Guerreiro, A.; Correia, C.F.; Gomes, R.J.; Freire, A.; Monteiro, E.; Barroso, E.; et al. "A non-invasive method based on saliva to characterize transthyretin in familial amyloidotic polyneuropathy patients using FT-ICR high-resolution MS". Proteomics - Clinical Applications 4 6-7 (2010): 674-678. http://www.scopus.com/inward/record.url?eid=2-s2.0-77955783949&partnerID=MN8TOARS. 10.1002/prca.200900118 Batista, A.P.; Franco, C.; Mendes, M.; Coelho, A.V.; Pereira, M.M.; Ana P. Batista; Catarina Franco; et al. "Subunit composition of Rhodothermus marinus respiratory complex I". Analytical Biochemistry 407 1 (2010): 104-110. http://www.scopus.com/inward/record.url?eid=2-s2.0-77956877617&partnerID=MN8TOARS. 10.1016/j.ab.2010.07.038 Matias, A.A.; Serra, A.T.; Silva, A.C.; Perdigão, R.; Ferreira, T.B.; Marcelino, I.; Silva, S.; et al. "Portuguese winemaking residues as a potential source of natural anti-adenoviral agents". International Journal of Food Sciences and Nutrition 61 4 (2010): 357-368. http://www.scopus.com/inward/record.url?eid=2-s2.0-77952555256&partnerID=MN8TOARS. 10.3109/09637480903430990 Silva, S.; Gomes, L.; Leitão, F.; Bronze, M.; Coelho, A.V.; Boas, L.V.; Sandra Silva; et al. "Secoiridoids in olive seed: Characterization of nüzhenide and 11-methyl oleosides by liquid chromatography with diode array and mass spectrometry". Grasas y Aceites 61 2 (2010): 157-164. http://www.scopus.com/inward/record.url?eid=2-s2.0-77649322083&partnerID=MN8TOARS. 10.3989/gya.087309 Toubarro, D.; Lucena-Robles, M.; Nascimento, G.; Santos, R.; Montiel, R.; Veríssimo, P.; Pires, E.; et al. "Serine protease-mediated host invasion by the parasitic nematode Steinernema carpocapsae". Journal of Biological Chemistry 285 40 (2010): 30666-30675. http://www.scopus.com/inward/record.url?eid=2-s2.0-77957259709&partnerID=MN8TOARS. 10.1074/jbc.M110.129346 Lamy, E.; Baptista, E.S.; Coelho, A.V.; Silva, F.C.. "Morphological alterations in salivary glands of mice (Mus musculus) submitted to tannin enriched diets: Comparison with sialotrophic effects of sympathetic agonists stimulation \| Alterações morfológicas das glândulas salivares de camundongos (Mus musculus) submetidos a dietas enriquecidas com taninos: comparação com os efeitos sialotróficos da estimulação com agonistas do sistema nervoso simpático". Arquivo Brasileiro de Medicina Veterinaria e Zootecnia 62 4 (2010): 837-844. http://www.scopus.com/inward/record.url?eid=2-s2.0-78049442451&partnerID=MN8TOARS. 10.1590/S0102-09352010000400012 Campos, A.; Carvajal-Vallejos, P.K.; Villalobos, E.; Franco, C.F.; Almeida, A.M.; Coelho, A.V.; Torné, J.M.; et al. "Characterisation of Zea mays L. plastidial transglutaminase: Interactions with thylakoid membrane proteins". Plant Biology 12 5 (2010): 708-716. http://www.scopus.com/inward/record.url?eid=2-s2.0-78049410221&partnerID=MN8TOARS. 10.1111/j.1438-8677.2009.00280.x Sales-baptista Sales-Baptista; Sales Baptista, E.; Lamy, E.; Mau, M.; Capela e Silva, F.; Coelho, A.V.. "VARIATION IN SALIVARY PROTEIN COMPOSITION RELATED TO FEEDING BEHAVIOR AND ITS ECOLOGICAL IMPLICATIONS". Behavioral and Chemical Ecology (2010): https://publons.com/publon/13968683/. Gomes-Alves, Patricia; Couto, Francisco; Pesquita, Catia; Coelho, Ana V.; Penque, Deborah; Gomes-Alves, P.; Couto, F.; et al. "Rescue of F508del-CFTR by RXR motif inactivation triggers proteome modulation associated with the unfolded protein response". Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1804 4 (2010): 856-865. https://publons.com/publon/3781920/. 10.1016/J.BBAPAP.2009.12.013 Alexandre MO Campos; Campos, A.O.; Almeida, A.M.D.; Coelho, A.V.. "BLUE NATIVE PAGE, BASIS OF THE TECHNIQUE AND ITS USE IN ORGANELLE STUDY: THE MITOCHONDRIAL COMPLEXOME". Mitochondria: Structure, Functions and Dysfunctions (2010): https://publons.com/publon/13968684/. A. M. Almeida; A. Campos; R. Francisco; S. Van Harten; L. A. Cardoso; A. V. Coelho; Almeida, A.M.; et al. "Proteomic investigation of the effects of weight loss in the gastrocnemius muscle of wild and NZW rabbits via 2D-electrophoresis and MALDI-TOF MS". Animal Genetics 41 3 (2010): 260-272. https://publons.com/publon/8050222/. 10.1111/J.1365-2052.2009.01994.X Antunes, Alexandra M. M.; Godinho, Ana L. A.; Martins, Ines L.; Oliveira, M. Conceicao; Gomes, Ricardo A.; Coelho, Ana V.; Beland, Frederick A.; Marques, M. Matilde. "Protein Adducts As Prospective Biomarkers of Nevirapine Toxicity". Chemical Research in Toxicology (2010): https://publons.com/publon/4396364/. 10.1021/TX100186T Catarina F. Franco; Maria Cândida M. Mellado; Paula M. Alves; Ana V. Coelho; Franco, C.F.; Mellado, M.C.M.; Alves, P.M.; Coelho, A.V.. "Monitoring virus-like particle and viral protein production by intact cell MALDI-TOF mass spectrometry". Talanta 80 4 (2010): 1561-1568. https://publons.com/publon/4852879/. 10.1016/J.TALANTA.2009.06.081 da Costa, G.; Gomes, R.; Correia, C. F.; Freire, A.; Monteiro, E.; Martins, A.; Barroso, E.; et al. "Identification and quantitative analysis of human transthyretin variants in human serum by Fourier transform ion-cyclotron resonance mass spectrometry". Amyloid 16 4 (2009): 201-207. http://dx.doi.org/10.3109/13506120903421561. 10.3109/13506120903421561 Chaves, Inês; Pinheiro, Carla; Paiva, Jorge A. P.; Planchon, Sébastien; Sergeant, Kjell; Renaut, Jenny; Graça, José A.; et al. "Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue". PROTEOMICS 9 17 (2009): 4154-4175. http://dx.doi.org/10.1002/pmic.200700649. 10.1002/pmic.200700649 Pereira, L.; Coelho, A.V.; Viegas, C.A.; Santos, M.M.C.d.; Robalo, M.P.; Martins, L.O.; Pereira, Luciana; et al. "Enzymatic biotransformation of the azo dye Sudan Orange G with bacterial CotA-laccase". Journal of Biotechnology 139 1 (2009): 68-77. http://www.scopus.com/inward/record.url?eid=2-s2.0-57349092971&partnerID=MN8TOARS. 10.1016/j.jbiotec.2008.09.001 Almeida, A.M.; Campos, A.; van Harten, S.; Cardoso, L.A.; Coelho, A.V.; André M. Almeida; Alexandre Campos; et al. "Establishment of a proteomic reference map for the gastrocnemius muscle in the rabbit (Oryctolagus cuniculus)". Research in Veterinary Science 87 2 (2009): 196-199. http://www.scopus.com/inward/record.url?eid=2-s2.0-67650429974&partnerID=MN8TOARS. 10.1016/j.rvsc.2009.02.011 Gomes-Alves, P.; Neves, S.; Coelho, A.V.; Penque, D.; Gomes-Alves, Patricia; Neves, Sofia; Coelho, Ana V.; Penque, Deborah. "Low temperature restoring effect on F508del-CFTR misprocessing: A proteomic approach". Journal of Proteomics 73 2 (2009): 218-230. http://www.scopus.com/inward/record.url?eid=2-s2.0-70449521295&partnerID=MN8TOARS. 10.1016/j.jprot.2009.09.001 Pereira, Luciana; Coelho, Ana V.; Viegas, Cristina A.; Ganachaud, Christelle; Iacazio, Gilles; Tron, Thierry; Robalo, M. Paula; Martins, Ligia O.. "On the Mechanism of Biotransformation of the Anthraquinonic Dye Acid Blue 62 by Laccases". Advanced Synthesis & Catalysis (2009): https://publons.com/publon/3275100/. 10.1002/ADSC.200900271 Campos, Alexandre; da Costa, Goncalo; Coelho, Ana Varela; Fevereiro, Pedro; Campos, A.; da Costa, G.; Coelho, A.V.; Fevereiro, P.. "Identification of bacterial protein markers and enolase as a plant response protein in the infection of Olea europaea subsp europaea by Pseudomonas savastanoi pv. savastanoi". European Journal of Plant Pathology 125 4 (2009): 603-616. https://publons.com/publon/6099629/. 10.1007/S10658-009-9509-0 M. Jesus Perry; Eduarda Mendes; Ana Luísa Simplício; Ana Coelho; Ricardo V. Soares; Jim Iley; Rui Moreira; et al. "Dopamine- and tyramine-based derivatives of triazenes: Activation by tyrosinase and implications for prodrug design". European Journal of Medicinal Chemistry 44 8 (2009): 3228-3234. https://publons.com/publon/3570015/. 10.1016/J.EJMECH.2009.03.025 Santos, R.; da Costa, G.; Franco, C.; Gomes-Alves, P.; Flammang, P.; Coelho, A. V.. "First Insights into the Biochemistry of Tube Foot Adhesive from the Sea Urchin Paracentrotus lividus (Echinoidea, Echinodermata)". Marine Biotechnology (2009): https://publons.com/publon/1499833/. 10.1007/S10126-009-9182-5 Duarte Toubarro; Miguel Lucena-Robles; Gisela Nascimento; Gonçalo Costa; Rafael Montiel; Ana V. Coelho; Nelson Simões; et al. "An apoptosis-inducing serine protease secreted by the entomopathogenic nematode Steinernema carpocapsae". International Journal for Parasitology 39 12 (2009): 1319-1330. https://publons.com/publon/7529328/. 10.1016/J.IJPARA.2009.04.013 Lamy, E.; da Costa, G.; Santos, R.; Capela e Silva, F.; Potes, J.; Pereira, A.; Coelho, A. V.; et al. "Sheep and goat saliva proteome analysis: A useful tool for ingestive behavior research?". Physiology & Behavior 98 4 (2009): 393-401. https://publons.com/publon/491339/. 10.1016/J.PHYSBEH.2009.07.002 Martins, L. O.; Pereira, L.; Coelho, A. V.; Viegas, C. A.; Correia Dos Santos, M.; Robalo, M. P.. "Insights into the mechanism of azo and anthraquinonic dyes biotransformation by the Bacillus subtilis laccase". New Biotechnology (2009): https://publons.com/publon/3275128/. 10.1016/J.NBT.2009.06.448 Sérgio Mota; Marta Mendes; Natália Freitas; Deborah Penque; Ana V. Coelho; Celso Cunha; Mota, S.; et al. "Proteome analysis of a human liver carcinoma cell line stably expressing hepatitis delta virus ribonucleoproteins". Journal of Proteomics 72 4 (2009): 616-627. https://publons.com/publon/3781894/. 10.1016/J.JPROT.2008.12.003 Bravo, M.N.; Feliciano, R.; Silva, S.; Coelho, A.V.; Vilas Boas, L.; Bronze, M.R.; M.N. Bravo; et al. "Analysis of trans-resveratrol: Comparison of methods and contents in Muscatel fortified wines from Setúbal region in Portugal". Journal of Food Composition and Analysis 21 8 (2008): 634-643. http://dx.doi.org/10.1016/j.jfca.2008.04.007. 10.1016/j.jfca.2008.04.007 Gomes, Ricardo Anjos; Miranda, Hugo Vicente; Sousa Silva, Marta; GraÃ§a, GonÃ§alo; Coelho, Ana Varela; do Nascimento Ferreira, AntÃ³nio Eduardo; Cordeiro, Carlos; et al. "Protein glycation and methylglyoxal metabolism in yeast: finding peptide needles in protein haystacks". FEMS Yeast Research 8 1 (2008): 174-181. http://dx.doi.org/10.1111/j.1567-1364.2007.00337.x. 10.1111/j.1567-1364.2007.00337.x Mellado, M.C.M.; Franco, C.; Coelho, A.; Alves, P.M.; Simplício, A.L.; Maria Candida M. Mellado; Catarina Franco; et al. "Sodium dodecyl sulfate-capillary gel electrophoresis analysis of rotavirus-like particles". Journal of Chromatography A 1192 1 (2008): 166-172. http://www.scopus.com/inward/record.url?eid=2-s2.0-42649090756&partnerID=MN8TOARS. 10.1016/j.chroma.2008.03.035 Lamy, E.; Da Costa, G.; E Silva, F.C.; Potes, J.; Coelho, A.V.; Baptista, E.S.; Elsa Lamy; et al. "Comparison of electrophoretic protein profiles from sheep and goat parotid saliva". Journal of Chemical Ecology 34 3 (2008): 388-397. http://www.scopus.com/inward/record.url?eid=2-s2.0-40849101455&partnerID=MN8TOARS. 10.1007/s10886-008-9442-2 Mota, S.; Mendes, M.; Penque, D.; Coelho, A.V.; Cunha, C.; Sérgio Mota; Marta Mendes; et al. "Changes in the proteome of Huh7 cells induced by transient expression of hepatitis D virus RNA and antigens". Journal of Proteomics 71 1 (2008): 71-79. http://www.scopus.com/inward/record.url?eid=2-s2.0-43849106020&partnerID=MN8TOARS. 10.1016/j.jprot.2007.12.002 Gomes, R.A.; Oliveira, L.M.A.; Silva, M.; Ascenso, C.; Quintas, A.; Costa, G.; Coelho, A.V.; et al. "Protein glycation in vivo: Functional and structural effects on yeast enolase". Biochemical Journal 416 3 (2008): 317-325. http://www.scopus.com/inward/record.url?eid=2-s2.0-58949095221&partnerID=MN8TOARS. 10.1042/BJ20080632 A.T. Caldeira; S.S. Feio; J.M.S. Arteiro; A.V. Coelho; J.C. Roseiro; Caldeira, A.T.; Feio, S.S.; et al. "Environmental dynamics of Bacillus amyloliquefaciens CCMI 1051 antifungal activity under different nitrogen patterns". Journal of Applied Microbiology 104 3 (2008): 808-816. https://publons.com/publon/7241593/. 10.1111/J.1365-2672.2007.03601.X G. da Costa; E. Lamy; F. Capela e Silva; J. Andersen; E. Sales Baptista; A. V. Coelho; Da Costa, G.; et al. "Salivary amylase induction by tannin-enriched diets as a possible countermeasure against tannins". Journal of Chemical Ecology 34 3 (2008): 376-387. https://publons.com/publon/11064315/. 10.1007/S10886-007-9413-Z Santos, Susana Constantino Rosa; Vala, Inês; Miguel, Cláudia; Barata, João T.; Garção, Pedro; Agostinho, Paula; Mendes, Marta; et al. "Expression and Subcellular Localization of a Novel Nuclear Acetylcholinesterase Protein". Journal of Biological Chemistry 282 35 (2007): 25597-25603. http://dx.doi.org/10.1074/jbc.m700569200. 10.1074/jbc.m700569200 Valente, F.M.A.; Pereira, P.M.; Venceslau, S.S.; Regalla, M.; Coelho, A.V.; Pereira, I.A.C.; Filipa M.A. Valente; et al. "The [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough is a bacterial lipoprotein lacking a typical lipoprotein signal peptide". FEBS Letters 581 18 (2007): 3341-3344. http://www.scopus.com/inward/record.url?eid=2-s2.0-34447267263&partnerID=MN8TOARS. 10.1016/j.febslet.2007.06.020 Chen, Zhenjia; Franco, Catarina F.; Baptista, Ricardo P.; Cabral, Joaquim M. S.; Coelho, Ana V.; Rodrigues, Carlos J., Jr.; Melo, Eduardo P.; et al. "Purification and identification of cutinases from Colletotrichum kahawae and Colletotrichum gloeosporioides". Applied Microbiology and Biotechnology 73 6 (2007): 1306-1313. https://publons.com/publon/4852883/. 10.1007/S00253-006-0605-1 Pereira, Luciana; Viegas, Cristina; Coelho, Ana; Robalo, Maria Paula; Martins, Ligia. "Mechanisms of enzymatic degradation of azo and anthraquinone dyes by bacterial CotA-laccase". Journal of Biotechnology (2007): https://publons.com/publon/7402437/. 10.1016/J.JBIOTEC.2007.07.185 MIRANDA, JOANA; NASCIMENTO, ELISABETE; CRUZ, HELDER; HONG, YIN; COELHO, ANA; AHMED, JABBAR S.; OLIVA, ABEL. "Identification and Characterization of Merozoite Antigens of a Theileria Species Highly Pathogenic for Small Ruminants in China". Annals of the New York Academy of Sciences 1081 1 (2006): 443-452. http://dx.doi.org/10.1196/annals.1373.063. 10.1196/annals.1373.063 Silva, S.; Gomes, L.; Leitão, F.; Coelho, A. V.; Boas, L. Vilas; Coelho, A.V.; Boas, L.V.. "Phenolic Compounds and Antioxidant Activity of Olea europaea L. Fruits and Leaves". Food Science and Technology International 12 5 (2006): 385-395. http://dx.doi.org/10.1177/1082013206070166. 10.1177/1082013206070166 Bravo, M.N.; Silva, S.; Coelho, A.V.; Boas, L. Vilas; Bronze, M.R.; Boas, L.V.; M.N. Bravo; et al. "Analysis of phenolic compounds in Muscatel wines produced in Portugal". Analytica Chimica Acta 563 1-2 (2006): 84-92. http://dx.doi.org/10.1016/j.aca.2005.11.054. 10.1016/j.aca.2005.11.054 Gomes, Ricardo A.; Vicente Miranda, Hugo; Silva, Marta Sousa; Graca, Goncalo; Coelho, Ana V.; Ferreira, Antonio E.; Cordeiro, Carlos; et al. "Yeast protein glycation in vivo by methylglyoxal - Molecular modification of glycolytic enzymes and heat shock proteins". The FEBS Journal 273 23 (2006): 5273-5287. https://publons.com/publon/5378549/. 10.1111/J.1742-4658.2006.05520.X D. Martins Teixeira; R. Ferreira Patão; A. Varela Coelho; C. Teixeira da Costa; Teixeira, D.M.; Patão, R.F.; Coelho, A.V.; Da Costa, C.T.. "Comparison between sample disruption methods and solid–liquid extraction (SLE) to extract phenolic compounds from Ficus carica leaves". Journal of Chromatography A 1103 1 (2006): 22-28. https://publons.com/publon/7934636/. 10.1016/J.CHROMA.2005.11.047 Mónica Roxo-Rosa; Gonçalo da Costa; Theo M. Luider; Bob J. Scholte; Ana V. Coelho; Margarida D. Amaral; Deborah Penque; et al. "Proteomic analysis of nasal cells from cystic fibrosis patients and non-cystic fibrosis control individuals: Search for novel biomarkers of cystic fibrosis lung disease". Proteomics 6 7 (2006): 2314-2325. https://publons.com/publon/3781912/. 10.1002/PMIC.200500273 Feng Li; Rita Delgado; Ana Coelho; Michael G.B. Drew; Vítor Félix; Li, F.; Delgado, R.; et al. "New dioxadiaza-, trioxadiaza- and hexaaza-macrocycles containing dibenzofuran units". Tetrahedron 62 36 (2006): 8550-8558. https://publons.com/publon/6998186/. 10.1016/J.TET.2006.06.073 Gomes-Alves, P.; Imrie, M.; Gray, R. D.; Coelho, A. V.; Porteous, D. J.; Boyd, A. C.; Penque, D.. "Proteomic profiling of serum and airway cells in cystic fibrosis disease". Molecular & Cellular Proteomics (2006): https://publons.com/publon/3781904/. A.S. Coroadinha; A.C. Silva; E. Pires; A. Coelho; P.M. Alves; M.J.T. Carrondo; Coroadinha, A.S.; et al. "Effect of osmotic pressure on the production of retroviral vectors: Enhancement in vector stability". Biotechnology and Bioengineering 94 2 (2006): 322-329. https://publons.com/publon/6892626/. 10.1002/BIT.20847 Silva,Sandra; Matias,Ana A.; Nunes,Ana; Duarte,Catarina; Coelho,Ana V.; Bronze,M. Rosário. "Identification of flavonol glycosides in winemaking by-products by HPLC with different detectors and hyphenated with mass spectrometry". (2005): http://www.scielo.mec.pt/scielo.php?script=sci_arttext&pid=S0254-02232005000100002. Ana V Coelho. "SGT1-interacting proteins in Drosophila melanogaster". Molecular & Cellular Proteomics (2005): https://publons.com/publon/13968682/. Rauter, AP; Martins, A; Borges, C; Ferreira, J; Justino, J; Bronze, MR; Coelho, AV; et al. "Liquid chromatography-diode array detection-electrospray ionisation mass spectrometry/nuclear magnetic resonance analyses of the anti-hyperglycemic flavonoid extract of Genista tenera - Structure elucidation of a flavonoid-C-glycoside". Journal of Chromatography A 1089 1-2 (2005): 59-64. https://publons.com/publon/1530378/. 10.1016/J.CHROMA.2005.06.046 Valente, FMA; Oliveira, ASF; Gnadt, N; Pacheco, I; Coelho, AV; Xavier, AV; Teixeira, M; et al. "Hydrogenases in Desulfovibrio vulgaris Hildenborough: structural and physiologic characterisation of the membrane-bound [NiFeSe] hydrogenase". Journal of Biological Inorganic Chemistry 10 6 (2005): 667-682. https://publons.com/publon/6559262/. 10.1007/S00775-005-0022-4 Ana V Coelho. "Human liver proteome changes induced by the hepatitis delta virus". Molecular & Cellular Proteomics (2005): https://publons.com/publon/3781909/. Celso Cunha. "Changes in the human liver proteome induced by transient expression of hepatitis delta virus RNA". Molecular & Cellular Proteomics (2005): https://publons.com/publon/3781911/. Goncalo Costa. "Interaction of kinetochore proteins with tubulin". Molecular & Cellular Proteomics (2005): https://publons.com/publon/11491396/. Alves, P.; Simas, A.; Da Costa, G.; Coelho, A.; Penque, D.. "Candidate proteins involved in the trafficking defect of F508del-CFTR; a proteomic approach". Molecular & Cellular Proteomics (2005): https://publons.com/publon/3781910/. Palma, A.S.; Morais, V.A.; Coelho, A.V.; Costa, J.. "Effect of the manganese ion on human a3/4 fucosyltransferase III activity". BioMetals 17 1 (2004): 35-43. http://www.scopus.com/inward/record.url?eid=2-s2.0-0742286872&partnerID=MN8TOARS. 10.1023/A:1024485718843 Correia, IJ; Paquete, CM; Coelho, A; Almeida, CC; Catarino, T; Louro, RO; Frazao, C; et al. "Proton-assisted two-electron transfer in natural variants of tetraheme cytochromes from Desulfomicrobium Sp". Journal of Biological Chemistry 279 50 (2004): 52227-52237. https://publons.com/publon/6189486/. 10.1074/JBC.M408763200 Palma, Angelina S.; Morais, Vanessa A.; Coelho, Ana V.; Costa, Júlia. "BioMetals". BioMetals 17 1 (2004): 35-43. http://dx.doi.org/10.1023/a:1024485718843. 10.1023/a:1024485718843 Abreu, I.A.; Lourenço, A.I.; Xavier, A.V.; LeGall, J.; Coelho, A.V.; Matias, P.M.; Pinto, D.M.; et al. "A novel iron centre in the split-Soret cytochrome c from Desulfovibrio desulfuricans ATCC 27774". Journal of Biological Inorganic Chemistry 8 3 (2003): 360-370. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037326047&partnerID=MN8TOARS. 10.1007/S00775-002-0426-3 Matias, Pedro M.; Coelho, Ana V.; Valente, Filipa M.A.; Plácido, Diana; LeGall, Jean; Xavier, António V.; Pereira, Inês A.C.; Carrondo, Maria Arménia. "Sulfate Respiration in Desulfovibrio vulgaris Hildenborough". Journal of Biological Chemistry 277 49 (2002): 47907-47916. http://dx.doi.org/10.1074/jbc.m207465200. 10.1074/jbc.m207465200 Matias, P.M.; Coelho, A.V.; Valente, F.M.A.; Plácido, D.; LeGall, J.; Xavier, A.V.; Pereira, I.A.C.; Carrondo, M.A.. "Sulfate respiration in Desulfovibrio vulgaris Hildenborough: Structure of the 16-heme cytochrome c HmcA at 2.5-Å resolution and a view of its role in transmembrane electron transfer". Journal of Biological Chemistry 277 49 (2002): 47907-47916. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037033048&partnerID=MN8TOARS. 10.1074/jbc.M207465200 Coelho, A.V.; Macedo, S.; Matias, P.M.; Thompson, A.W.; LeGall, J.; Carrondo, M.A.; Coelho, Ana V.; et al. "Structure determination of bacterioferritin from Desulfovibrio desulfuricans by the MAD method at the Fe K-edge". Acta Crystallographica Section D: Biological Crystallography 57 2 (2001): 326-329. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035128171&partnerID=MN8TOARS. 10.1107/S0907444900015286 Macedo, S.; Matias, P. M.; Mitchell, E.; Coelho, A.; Le Gall, J.; Lindley, P.; Carrondo, M. A.. "Structural determination of Bacterioferritin from Desulfovibrio Desulfuricans ATCC 27774". Acta Crystallographica Section A: Foundations and Advances (2000): https://publons.com/publon/42103385/. 10.1107/S0108767300025952 Matias, Pedro M.; Saraiva, Lígia M.; Soares, Cláudio M.; Coelho, Ana V.; LeGall, Jean; Carrondo, Maria Arménia; Matias, P.M.; et al. "Nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774¿:¿primary sequence determination, crystallographic refinement at 1.8¿ and modelling studies of its interaction with the tetrahaem cytochrome c3". JBIC Journal of Biological Inorganic Chemistry 4 4 (1999): 478-494. http://dx.doi.org/10.1007/s007750050334. 10.1007/s007750050334 Matias, P.M.; Coelho, R.; Pereira, I.A.C.; Coelho, A.V.; Thompson, A.W.; Sieker, L.C.; Le Gall, J.; Carrondo, M.A.. "The primary and three-dimensional structures of a nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774 reveal a new member of the Hmc family". Structure 7 2 (1999): 119-130. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033081499&partnerID=MN8TOARS. 10.1016/S0969-2126(99)80019-7 Coelho, A.V.; Matias, P.; Fülöp, V.; Thompson, A.; Gonzalez, A.; Carrondo, M.A.; Ana V. Coelho; et al. "Desulfoferrodoxin structure determined by MAD phasing and refinement to 1.9-Å resolution reveals a unique combination of a tetrahedral FeS4centre with a square pyramidal FeSN4centre". Journal of Biological Inorganic Chemistry 2 6 (1997): 680-689. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031459603&partnerID=MN8TOARS. 10.1007/s007750050184 Matias, P.M.; Morais, J.; Coelho, A.V.; Meijers, R.; Gonzalez, A.; Thompson, A.W.; Sieker, L.; et al. "A preliminary analysis of the three-dimensional structure of dimeric di- haem split-Soret cytochrome c from Desulfovibrio desulfuricans ATCC 27774 at 2.5-Å resolution using the MAD phasing method: A novel cytochrome fold with a stacked-haem arrangement". Journal of Biological Inorganic Chemistry 2 4 (1997): 507-514. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030773395&partnerID=MN8TOARS. 10.1007/s007750050162 Coelho, A.V.; Matias, P.M.; Sieker, L.C.; Morais, J.; Carrondo, M.A.; Lampreia, J.; Costa, C.; et al. "Preliminary crystallographic analysis and further characterization of a dodecaheme cytochrome c from Desulfovibrio desulfuricans ATCC 27774". Acta Crystallographica Section D: Biological Crystallography 52 6 (1996): 1202-1208. http://www.scopus.com/inward/record.url?eid=2-s2.0-12644312235&partnerID=MN8TOARS. 10.1107/S090744499600738X Coelho, Ana; Matias, Peho M.; Carrondo, MariaA.; Fulop, Vilmos; Gonzalez, Ana; Thompson, Andy. "MAD PHASING USED IN THE STRUCTURE DETERMINATION OF DESULFOFERRODOXIN". Acta Crystallographica Section A: Foundations and Advances (1996): https://publons.com/publon/19468433/. 10.1107/S0108767396096742 Matias, Pedro M.; Coelho, Ana; Carrondo, Maria A.; Fulop, Vilmos; Gonzalez, Ana; Thompson, Andy. "A NOVEL IRON CENTER IN DESULFOFERRODOXIN FROM D.DESULFURICANS ATCC 27774: CRYSTAL STRUCTURE AT 1.8 angstrom RESOLUTION". Acta Crystallographica Section A: Foundations and Advances (1996): https://publons.com/publon/19468434/. 10.1107/S0108767396096237 Baltazar Castro. "ELECTROCHEMICAL AND STRUCTURAL STUDIES OF NICKEL(II) COMPLEXES WITH N2O2 SCHIFF-BASE LIGANDS DERIVED FROM 2-HYDROXY-1-NAPHTHALDEHYDE - MOLECULAR-STRUCTURE OF N,N'-2,3-DIMETHYLBUTANE-2,3-DIYL-BIS(2-HYDROXY-1-NAPHTHYLIDENEIMINATE) NICKEL(II)". Inorganica Chimica Acta (1993): https://publons.com/publon/6095914/.
Preprint	Sobral, Daniel; Fernandes, Ana F; Sardoo, Atlas; Bernardes, Miguel; Pinto, Patrícia; Santos, Helena; Lagoas-Gomes, João; et al. "MULTI-OMICS TEMPORAL PROFILING OF AXIAL SPONDYLOARTHRITIS PATIENTS REVEALS AN ASSOCIATION OF THERAPEUTIC RESPONSE TO ADALIMUMAB WITH DISEASE ACTIVITY AND INNATE / ADAPTIVE IMMUNITY". 2022. http://dx.doi.org/10.1101/2022.08.02.22278314. 10.1101/2022.08.02.22278314
Thesis / Dissertation	Couto, Natacha Monge Gomes do. "Insights into the dynamics of methicillin-resistant staphylococci in animals : a focus on Staphylococcus pseudintermedius in dogs". PhD, 2016. http://hdl.handle.net/10400.5/10771. CONDE, Ricardo Diogo Alves. "Uma abordagem metabolómica no diagnóstico da tuberculose". Master, 2016. http://hdl.handle.net/10362/20060. Oliveira, Bárbara Xavier Louro de. "Dynamics of circulating coelomocytes during starfish regeneration". Master, 2016. http://hdl.handle.net/10451/25862. Pedrosa, Ana Raquel Realista Coelho dos Santos. "Hemoglobinopatias e malária : obstáculos com potencial futuro". Master, 2016. http://hdl.handle.net/10451/26011. Marques, Vera Cristina J.. "Impact of seawater acidification in starfish regeneration: a proteomic approach". Master, 2015. http://hdl.handle.net/10451/22554. Magalhães, Ilídio Miguel Teixeira. "Proteome of biofilm produced by a S. pseudintermedius strain". Master, 2014. http://hdl.handle.net/10773/14291. Martins, Joana Filipa Raimundo. "Determinação das proteínas diferencialmente expressas nos coelomócitos da estrela-do-mar (Marthasterias glacialis) durante 3 fases distintas da regeneração". Master, 2013. http://hdl.handle.net/10451/9228. Franco, Catarina de Matos Ferraz. "Proteomics based approach to understand tissue regeneration". PhD, 2011. http://hdl.handle.net/10362/14118. MOTA, Sérgio Miguel Regufe da. "Estudo da influência dos siRNAS na replicação do vírus da hepatite delta e análise da expressão genética em células infectadas". PhD, 2009. http://hdl.handle.net/10362/62617. Lamy, Elsa Cristina Carona de Sousa. "Salivary proteomics as a tool to understand ingestive behavior: an experimental study in sheep (Ovis aries), goat (Capra hircus) and mice (Mus musculus)". PhD, 2008. http://hdl.handle.net/10174/11145. Coelho, Ana Maria de Jesus Bispo Varela. "Determinação e Análise da Estrutura da Desulfoferrodoxina Isolada de Desulfovibrio desulfuricans ATC 27774". PhD, 1998. http://hdl.handle.net/10174/11016.

Other

Other output

Grapevine – Downy Mildew Rendez-Vous: Proteome Analysis of the First Hours of an Incompatible Interaction. 2020. Rita B. Santos; Rui Nascimento; Ana V. Coelho; Andreia Figueiredo. https://doi.org/10.20944/preprints202010.0066.v1.
10.20944/preprints202010.0066.v1
Identification of changes in salivary proteome in canine obesity-related metabolic dysfunction.. The data observed in present study suggest that canine ORMD is associated with changes in salivary proteome that could reflect altered metabolism in these dogs.. 2018. Lucena, Sónia; Lamy, Elsa; Capela e Silva, Fernando; Tvarijonaviciute, Asta; Varela Coelho, Ana. http://hdl.handle.net/10174/24657.

Activities

Oral presentation

	Presentation title	Event name Host (Event location)
2023/12/07	Commensalism vs pathogenicity in Staphylococcus epidermidis - uncovered by an integrated omics approach	Congress of Microbiology and Biotechnology (Covilhã, Portugal)
2023/06/20	Integration of proteomics and metabolic modelling to study the pH-dependent response of pathogenic and commensal Staphylococcus epidermidis strains	ProteoAix 2023 ¿ Joint SeProt/Procura/Sfeap Meeting, Aix-en-Provence, France. (Aix-en-Provence, France)
2023/06/20	Commensalism vs pathogenicity in Staphylococcus epidermidis - uncovered by an integrated omics approach	ProteoAix (Aix-en-Provence, France)
2023/03/01	Regeneration of starfish radial nerve cord restores animal mobility and unveils a new coelomocyte population	Building Bridges in Biology Symposium INstituto Gulbenkian Ciências (Oeiras, Portugal)
2023/03/01	Dynamic exometabolomics reveals the adaptation of Staphylococcus epidermidis to host blood pH	Bridges in Biology Symposium INstituto Gulbenkian Ciências (Oeiras, Portugal)
2022/05/11	Differences and similarities on metabolic response to pH by commensal and pathogenic Staphylococcus epidermidis strains	ProteoVilamoura ProCura - Associação Portuguesa de Proteómica (Vilamoura, Portugal)
2022/03/05	Mass spectrometry-based proteomics and metabolomics profiling of serum samples for discovery and validation of TB diagnostic biomarkers	Tuberculosis World Day Commemoration National Institute of Health Doutor Ricardo Jorge (Lisboa, Portugal)
2020/10/13	Protein biomarkers may differentiate responders and non-responders to Adalimumab, a tumour necrosis factor inhibitor, in ankylosing spondylitis (AS) patients - A Bioefficacy Study	Sociedade Portuguesa de Reumatologia (Portugal)
2019	Proteomics & Metabolomics	2nd Maristem Workshop Instituto Politécnico de Leiria (Peniche, Portugal)
2019	MS-based proteomics – applications to health sciences	Seminar Universidade da Beira Interior (Covilhã, Portugal)
2018/11	Untargeted proteomics and proteogenomics for emergent marine/aquatic models boost ecotoxicoproteomics	2nd Maristem Cost Action Meeting Bagnyuls-sur-mer Marine Station (Bagnyuls-sur-mer, France)
2018/06	Signatures of commensal and pathogenic Staphylococcus epidermidis: a genomic and proteomic approach	XII EUPA Congress Universidade Santiago Compostela (Santiago de Compostela, Spain)
2018/02	Omics inputs for echinoderm regeneration outputs	1st Maristem Cost Action Meeting Piran Marine Station (Piran, Slovenia)
2018	Omics inputs for non-model organisms outputs	Seminar CEA, Marcoule (Marcoule, France)
2018	Omics inputs for biomedical questions	Seminar CEDOC CHRONIC DISEASES FCM NOVA (Lisboa, Portugal)
2018	Omics approaches towards the discovery of biomarkers for the early diagnosis of tuberculosis	Annual Congress on Clinical Mass Spectrometry (Salzburg, Austria)
2017/11	Omics approaches towards discovery of biomarkers for early diagnosis of tuberculosis	EMBO\|EMBL Symposium - From Single- to Multiomics: Applications and Challenges in Data Integration EMBL (Heidelberg, Germany)
2017/11	Omics approaches towards the discovery of biomarkers for the early diagnosis of tuberculosis	MiniSymposium Looking for new ways of fighting tuberculosis ITQB NOVA (Lisboa, Portugal)
2017/04	A metabolomics approach towards the early diagnostics of tuberculosis	4th National Congress of Tropical Medicine Instituto de Higiene e Medicina Tropical NOVA (Lisboa, Portugal)
2017	Learning from Marine Organisms: regeneration in echinoderms	3rd SEB-IST Meeting universidade de Lisboa, Instituto Superior Técnico (Lisboa, Portugal)
2017	Proteomics: some bioinformatics tools used and challenges	Seminar School of Technology, Institute Polytechnic of Setúbal ( Barreiro, Portugal)
2017	MS-based proteomics – applications to health sciences	Seminar Faculty of Pharmacy, University of Lisbon (Lisboa, Portugal)

Supervision

	Thesis Title Role	Degree Subject (Type) Institution / Organization
2021 - Current	Elucidation of Staphylococcus epidermidis response to skin endogenous antimicrobial fatty acids Co-supervisor	Doctoral Programme in Nuclear Magnetic Resonance Applied to Chemistry, Materials and Biosciences (PhD) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021 - Current	Impact of starfish radial nerve cord regeneration on coelomocyte populations and coelomic epithelium biological/metabolic processes Supervisor	Mestrado Biologia Molecular e Genética (Master) Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2020 - Current	Discovery of biomarkers for the efficacy of Adalimumab in ankylosing spondylitis patients using a metabolomic approach Supervisor	Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2022/02/01 - 2022/02/06	Impact of starfish radial nerve cord regeneration on coelomic epithelium biological/metabolic processes Supervisor	Biochemistry for Health (Scientific initiation) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2020 - 2022	Regeneration Dynamics of the Radial Nerve Cord in the Sea Star Marthasterias glacialis (Linnaeus, 1758) Supervisor	Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2020/09/01 - 2021/05/22	Metabolomic characterization and antimicrobial activity of starfish M. glacialis tissue extracts Supervisor	CIÊNCIAS BIOMÉDICAS (Master) Universidade Nova de Lisboa Instituto de Higiene e Medicina Tropical, Portugal
2018 - 2021	Characterization of starfish coelomocytes Supervisor	Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2020/02/01 - 2020/02/06	Understanding chitosan anti-microbial activity using a metabolomics approach Supervisor	Biochemistry for health (Scientific initiation) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2019 - 2020	Dynamics of circulating asterosaponins during starfish regeneration: evaluation of antimicrobial activity Supervisor	Ciências Biomédicas (Master) Universidade Nova de Lisboa Instituto de Higiene e Medicina Tropical, Portugal
2019 - 2019	Dynamics of coelomic fluid proteins during star-fish nerve regeneration Supervisor	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2019 - 2019	Effects of nanoplastic in zebrafish Supervisor	Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2018 - 2019	Characterization of biological and metabolic responses to pH changes in a commensal Staphylococcus epidermidis strain Supervisor	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2018 - 2019	Biomarkers identification of the efficacy of anti-TNF a agent (Adalimumab) in ankylosing spondylitis patients using a proteomic approach Supervisor	Universidade de Trás-os-Montes e Alto Douro, Portugal
2018 - 2019	Comparação de estirpes de Staphylococcus epidermidis com diferentes prevalências em infeções: com base em elementos de genómica, proteómica e fenotípica Supervisor	Biochemistry (Degree) Universidade de Évora Departamento de Química, Portugal
2018 - 2019	Caracterização e Bioatividade de Extratos da Estrela do Mar Marthasterias Glacialis Supervisor	Biochemistry (Degree) Universidade de Évora Departamento de Química, Portugal
2018 - 2019	Asterosaponins involvement in starfish regeneration Supervisor	Biochemistry (Scientific initiation) Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2018 - 2018	Identificação de biomarcadores lipídicos no soro para o diagnóstico precoce da tuberculose Supervisor	Biochemistry (Degree) Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2018 - 2018	Evaluation of anti-microbial activity of chitosan nanoparticles followed by the study of their effect on E. coli proteome Supervisor	T C Üsküdar Üniversitesi, Turkey
2016 - 2016	Uma abordagem metabolómica no diagnóstico da tuberculose. Supervisor	Ciências Biomédicas (Master) Universidade Nova de Lisboa Instituto de Higiene e Medicina Tropical, Portugal
2015 - 2016	Dynamics of circulating coelomocytes populations during starfish regeneration Supervisor	Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2011 - 2016	Study of the interaction between the multiresistent bacteria Staphylococcus pseudintermedius and its canine host in an ex-vivo cutaneous model Co-supervisor	Universidade de Lisboa Faculdade de Medicina Veterinária, Portugal
2014 - 2015	Impact of seawater acidification in starfish regeneration – a proteomic approach Supervisor	Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2013 - 2014	Comparative proteome of biofilm matrices produced by several methicillin-susceptible and methicillin-resistant S. pseudintermedius strains Supervisor	Master in Bioochemistry (Master) Universidade de Aveiro, Portugal
2012 - 2012	Characterization of coelomic fluid composition during the regeneration of sea-star Marthasterias glacialis Supervisor	Universidade de Lisboa Instituto Superior Técnico, Portugal
2011 - 2012	Identification of coelomocytes differentially expressed proteins during the regeneration of sea-star Marthasterias glacialis Supervisor	Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2011 - 2012	The effects of cadmium induced stress on protein expression profiles of Nicotiana tabacum Supervisor	Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2008 - 2012	Analysis of changes in the host cell proteome during hepatitis D virus infection Co-supervisor	Universidade Nova de Lisboa Instituto de Higiene e Medicina Tropical, Portugal
2010 - 2011	Investigation of the effects of weight loss on Ovis aries muscle – A proteomic study on three breeds with different levels of adaptation to nutritional stress Co-supervisor	Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2007 - 2011	Proteomics based approach to understand tissue regeneration – sea star as a model organism Supervisor	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2009 - 2010	Differential Proteomics: A study in Medicago truncatula somatic embryogenesis Supervisor	Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2006 - 2010	Estudo do processo infeccioso de um nemátode baseado numa abordagem de proteómica e genómica Co-supervisor	Universidade dos Açores, Portugal
2008 - 2009	Protein expression in the hepatic tissue of three domestic sheep breeds influenced by weight loss – a study using 2DE and MALDI-TOF/TOF Co-supervisor	Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2004 - 2009	Papel da saliva no gosto de compostos fenólicos Co-supervisor	Universidade de Évora, Portugal
2004 - 2009	Cystic Fibrosis By Proteomics: identification of molecular targets for therapeutic intervention Co-supervisor	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2004 - 2009	Estudo da influência dos siRNAs na replicação do vírus da hepatite delta e análise da expressão genética em células infectadas Co-supervisor	Universidade Nova de Lisboa Instituto de Higiene e Medicina Tropical, Portugal
2005 - 2008	Proteomic analysis of chloroplast differentiation in Zea mays L. Supervisor	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2003 - 2008	Caracterização estrutural e funcional do cinetocoro de um eucariota superior – Drosophila melanogaster Supervisor	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2004 - 2005	Influence of the expression of genomic and antigenomic RNAs of HDV on the proteome of human liver cells Co-supervisor	Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

Event organisation

	Event name Type of event (Role)	Institution / Organization
2019/11/26 - Current	Practical workshop “Proteogenomics based annotation of bacterial and protozoan genomes” (2019/11/26 - 2019/11/26) Workshop (President of the Organising Committee)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2019/11/26 - Current	Proteogenomics and metaproteomics, new horizons in proteomics (2019/11/26) Seminar (President of the Organising Committee)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2017 - Current	Hands-on Course – Combining Proteomics and Genomics towards the Proteogenomics concept (2017/09/26 - 2017/09/29) Workshop (Co-organisor)	Universidade de Évora Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Portugal
2013 - Current	Metabolomic and molecular interactions for biology and health - A rupture technology Workshop (2013) Workshop (Co-organisor)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2011 - Current	DIGE Workshop (sponsored by GE Healthcare) (2011) Workshop (Co-organisor)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2011 - Current	Second RNEM Course on Protein Identification by Mass Spectrometry (2011) Workshop (President of the Organising Committee)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2010 - Current	4th European Association for Proteomics Meeting "2010 Proteomics Odyssey toward next decades" (2010) Conference (Co-organisor)	Portuguese Proteomics Association Rede ProCura , Portugal
2010 - Current	First RNEM Course on Protein Identification by Mass Spectrometry (2010) Workshop (President of the Organising Committee)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2005 - Current	3rd Annual Meeting of Portuguese Proteomic Network-Procura (2005) Conference (Co-organisor)	Portuguese Proteomics Association Rede ProCura , Portugal
2005 - Current	Workshop on behalf of the National Network for Mass Spectrometry (2005) Conference (Co-organisor)	Universidade de Aveiro, Portugal
2005 - Current	“Identification of proteins using mass spectrometry data – practical course” in collaboration with Thermo Finnighan (2005) Symposium (Co-organisor)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2004 - Current	2nd Annual Meeting of Portuguese Proteomic Network-Procura (2004) Conference (Co-organisor)	Portuguese Proteomics Association Rede ProCura , Portugal
2023/05/11 - 2023/05/13	ProteoVilamoura 2022 – Joint SeProt/Procura/Sfeap Meeting (2023/05/11 - 2023/05/13) Congress (Member of the Organising Committee)
2021/09/06 - 2021/10/08	Training School of the COST Action MARISTEM: Omics for studying stem cells in model and non-model aquatic invertebrate systems - Organization and teaching of the proteomic and metabolomic modules (2021 - 2021) Workshop (Member of the Organising Committee)
2019/04/08 - 2019/04/10	2nd Maristem Workshop - Omics approaches to identify and characterize marine/aquatic invertebrate stem cells (2019/04/08 - 2019/04/10) Workshop (President of the Organising Committee)	Instituto Politécnico de Leiria Escola Superior de Turismo e Tecnologia do Mar de Peniche, Portugal

Jury of academic degree

	Topic Role	Candidate name (Type of degree) Institution / Organization
2023	Study of potential biomarkers for differentiating between benign and malignant thyroid tumors (Thesis) Main arguer	Maria Margarida Coelho (PhD) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2023	Protéotypage haut-débit de microorganismes par spectrométrie de masse en tandem”, M Chabbas (Thesis) Main arguer	Madisson Chabas (PhD) Montpellier Université d¿Excellence, France
2023	Changes in the Saliva Proteome of Pigs with Diarrhoea Caused by Escherichia coli (Thesis) Main arguer	Miguel Rodrigues (Master) Universidade de Évora Escola de Ciências e Tecnologia, Portugal
2023	Structure and function of designed and engineered proteins targeting SARS-CoV-2 (Thesis) Arguer	B Fernandes (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	SARS-CoV-2 Spike and Receptor Binding Domain Glycoproteins Produced in Tobacco BY-2 and Medicago Cell Suspension Cultures (Thesis) Arguer	A Ferreira (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Superoxide reductases: unravelling catalytic determinants through natural and site directed mutants (Thesis) Arguer	V Mordido (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	The impact of SARS-CoV-2 Omicron variant on the receptor binding domain conformational dynamics and interaction with human ACE2 (Thesis) Arguer	R Teixeira (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Elucidating the physiological role of the DsrJ cytochrome in dissimilatory sulfate metabolism (Thesis) Arguer	R Bernardino (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Simulating substrate binding sites in the S. aureus Type II NADH Dehydrogenase (Thesis) Arguer	R Alves (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Ceramide in the Outer Mitochondrial Membrane and its Role in Apoptosis (Thesis) Arguer	G Vieira (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Towards the development of a 3D cell model to study interactions between glioma cells and microglia (Thesis) Arguer	F Sobral (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	A 3D hepatic model to address immune-mediated drug hepatotoxicity (Thesis) Arguer	J Oliveira (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Exploring genetic strategies to boost recombinant adeno-associated virus production in HeLa S3 stable producer cell lines (Thesis) Arguer	M Antunes (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Study of iron metabolism in the human pathogen Acinetobacter baumannii (Thesis) Arguer	B Moniz (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Tyrosinase-catalysed bioconjugation for the production of ferritin-based vaccine candidates (Thesis) Arguer	S Patão (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Functional characterization of evolutionarily-conserved sperm cell genes using an insect model President of the jury	J Almeida (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Exploring the antiproliferative effect of cannabinoids in human colorectal cancer cells - in vitro studies President of the jury	M Cardeira (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Regulation of peptidoglycan hydrolases in the bacterial pathogen Staphylococcus aureus President of the jury	A Tostão (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Investigating Challenges in the Proliferation of Leuconostoc pseudomensenteroides in Drosophila melanogaster: A Troubleshooting Perspective President of the jury	I Dionísio (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Extraction and purification of high value extracts and compounds iso-lated from Cannabis President of the jury	R Falcão (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	One system to image them all, one threshold to find them, one software to count them all, and in the datasheet analyse them President of the jury	M Tanqueiro (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Investigating chitotriosidase and glycosyltransferase 8 domain-containing protein 1 inAmyotrophic Lateral Sclerosis Thesis Member	M Felgueiras (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	X-ray crystal structure of Human GAPDH with a selective inhibitor Thesis Member	R Martins (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Spike glycoprotein: molecular characterization and inactivation of a key player in SARS-CoV-2 infection Thesis Member	A Buga (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Exploring novel copper(II) binding azole compounds as potential antifungal drugs Thesis Member	T Pissarro (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Synthesis, characterization and antiproliferative activity of iridium organometallic complexes bearing N,N-chelating ligands Thesis Member	M Meireles (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Developing fluorescent antifungal azole compounds for live fungal cell imaging”, L Ferreira Thesis Member	L Ferreira (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Unravelling the catalytic mechanism for NO reduction by a flavodiiron protein from an E. coli Thesis Member	F Oliveira (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Haem uptake study in Helicobacter pylori clinical strains isolated from children with iron deficiency anaemia Thesis Member	J Bernardino (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Establishing CETSA-MS technology for target engagement studies (part II) President of the jury	E Navarro (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Understand the Regulation of autolysins in S. aureus President of the jury	L Marques (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	OPPURE - Intensified AAV Purification Framework President of the jury	S Neto (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Quantification of the spatiotemporal dynamics of peptidoglycan synthases President of the jury	A Brito (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Characterization of the molecular mechanisms involved in centriole inactivation and elimination in skeletal muscle cells President of the jury	S Dias (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/01/01	Role of the peptidoglycan hydrolases in the interaction of Streptococcus pneumoniae with an infected host President of the jury	S Pinheiro (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Biochemical and Biophysical Characterization of Exoribonucleases from the Human Pathogen Mycobacterium Tuberculosis Thesis Member	V Costa (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Study of the QrcABCD membrane complex involved in energy conservation in gut anaerobes Thesis Member	G Manteigas (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Tetrapyrrole Metabolism of Staphylococcus aureus Thesis Member	S Mota (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Studies of the RIC protein in Staphylococcus aureus Thesis Member	A Nunes (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Pre-Clinical Evaluation of Targeted Therapies Using 3D Cell Models of Breast Cancer Thesis Member	G Trindade (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	A 3D hepatic model to address immune-mediated drug hepatotoxicity Thesis Member	J Oliveira (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Development of an in vitro humanised reconstructed 3D human melanoma skin model for assays with peripheral blood mononuclear cells (PBMC) Thesis Member	M Leite (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Live cell biosensors for detection and quantification of viral pathogens Thesis Member	R Fernandes (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Insights into determinants of the activity of the flavodiiron NO reductase from Escherichia coli Thesis Member	J Soares (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Microalgae for the Production of High-Value Compounds: Evaluation of the Effect of Different Nitrogen and Carbon Sources on the Production of Fucoxanthin in Phaeodactylum tricornutum Thesis Member	A Bragança (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Understanding the effect of iron on the candicidal activity of echinocandins Thesis Member	C Luis (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Structural studies on enzymes involved in microbial hydrogen sulfide metabolism Thesis Member	S Costa (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Insight into the biophysical properties of AsP2Ox, a candidate enzyme for health diagnosis biosensors Thesis Member	T Frazão (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/01/01	Establishing CETSA-MS technology for target engagement studies (part I) President of the jury	I Ferreira (Other) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2020/03/03	Utility of virus genes inhibiting the interferon response Thesis Member	I Moreira (Master)
2020/02/03	Metabolism studies on emerging novel psychoactive substances (NPS) – Synthetic cathinones buphedrone and N-ethylhexedrone Thesis Member	K Berkowicz (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2020/01/01	Exploring induced pluripotent stem cell-derived 3D neural cultures to model Mucopolysaccharidosis type VII Thesis Member	B Painho (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2020/01/01	Role of Repeat Instability in the Neurodegenerative Disease Spinocerebellar Ataxia Type 37 Thesis Member	R Ratola (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2019	Bioinformatique pour l’exploration de la diversité inter-espèces et inter-populations: hétérogénéité & données multi-omiques (Thesis) Main arguer	Y Cogne (PhD) Université de Montpellier, France
2019	Study of the effects of the culture condition in the permeation of reconstructed human skin (Thesis) Main arguer	M Pádua (Master) Universidade de Lisboa Faculdade de Ciências, Portugal
2019	Characterization of biological and metabolic responses to pH changes in a commensal Staphylococcus epidermidis strain Supervisor	S Santos (Master) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2018	Stabilizor-T1 Technology for Urine Proteome preservation at room Temperature (Thesis) Main arguer	Luis Carvalho (Master) Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2017	O envolvimento de proteínas salivares na sensibilidade gustativa (Thesis) Main arguer	L Rodrigues (PhD) Universidade de Évora, Portugal
2017	Dj-I neuronal rescue under oxidative stress: implications for Parkinson´s disease (Thesis) Main arguer	S Anjo (PhD) Universidade de Coimbra, Portugal

Association member

	Society Organization name	Role
2021 - Current	Sociedade Portuguesa de Microbiologia
2019 - Current	Portuguese Proteomics Association - Rede ProCura, the official representative member of Portugal in the European Proteomics Association (EuPA)	Vice-President
2012 - Current	Portuguese Proteomics Association - Rede ProCura	Co-founder, Treasurer (2012-2019), vice-president (2019-)
1993 - Current	Sociedade Portuguesa de Química	Member
2019 - 2021	Human Proteome Organization	councilor in representation of European Proteomic Association (EUPA) Appointed as diversity representative ratified by Electorate
2012 - 2019	Portuguese Proteomics Association - Rede ProCura, the official representative member of Portugal in the European Proteomics Association (EuPA)	Treasurer

Committee member

	Activity description Role	Institution / Organization
2020/03/01 - Current	Coordinator of the Postgraduate Program on Research Practice Coordinator	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2019 - Current	Member of the Pedagogical Council for the Master on Biochemistry for Health, ITQB/FCT/FCM Member	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2019 - 2021	HUPO councillor in representation of European Proteomic Association (EUPA) Appointed as diversity representative ratified by Electorate Member
2017 - 2021	Member of the Management Committée and Working Group Coordinator of “Stem cells of marine/aquatic invertebrates: from basic research to innovative applications”, Cost Action CA16203. Member
2011 - 2015	Member of the Management Committée of “Mass Spectrometry Imaging: New Tools for Healthcare Research”, Cost Action BM1104. Member
2007 - 2013	National Network for Mass Spectrometry, ITQB-UNL, Lisbon Coordinator
2005 - 2013	ITQB NOVA Representative in the National Network for Mass Spectrometry Member
2002 - 2006	Infra-Structure Support Committee Member	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2003 - 2005	Analytical Services Committee Member	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Conference scientific committee

	Conference name	Conference host
2019 - Current	ProteOviedo 2020	SetProt/Procura/French Proteomics Society
2010/10 - Current	4th European Association for Proteomics Meeting "2010 Proteomics Odyssey toward next decades	ProCura - Associação Portuguesa de Proteómica
2023/06/20 - 2023/06/25	ProteoAix 2023 – Joint SeProt/Procura/Sfeap Meeting, Aix-en-Provence, France.	SFEAP
2022 - 2022	ProteoVilamoura	Portuguese, French and Spanish Proteomic Associations

Course / Discipline taught

	Academic session	Degree Subject (Type)	Institution / Organization
2015 - Current	Lecture on “MS Lecture on “Mass Spectrometry Techniques”, curricular unit Methods in Biosciences I, PhD program MolBios	(Doutoramento)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2014 - Current	“Characterization of peptides by mass spectrometry”, COST Training School	(Outros)	Universidade de Lisboa Instituto Superior Tecnico Campus Tecnológico e Nuclear, Portugal
2013 - Current	Coordination of the curricular unit Bioanalytical Procedures	(Mestrado)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2013 - Current	Module on Protein identification by Mass Spectrometry included in the curricular unit Integrated Laboratorial Practices	(Mestrado)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2013 - Current	Module on Mass Spectrometry included in the curricular unit Biomolecular Methods included in the Master on Biochemistry for Health	(Mestrado)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021/09/06 - 2021/10/08	Training School: Omics for studying stem cells in model and non-model aquatic invertebrate systems - Organization of the proteomic and metabolomic modules, on line event	Omics for studying stem cells in model and non-model aquatic invertebrate systems (Postgraduate Certificate)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2019/04/08 - 2019/04/10	2nd workshop of the COST Action 16203 MARISTEM: Omic Approaches To Identify And Characterize Marine/Aquatic Invertebrate Stem Cells
2017/09/26 - 2017/09/29	Hands-on Course – Combining Proteomics and Genomics towards the Proteogenomics concept		Universidade de Évora Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Portugal
2003 - 2013	Module on “Introduction to MS” and “MS aplications - identification of proteins”	(Doutoramento)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2008 - 2011	Module on Protein identification by Mass Spectrometry	(Doutoramento)	Instituto Gulbenkian de Ciência, Portugal

Evaluation committee

	Activity description Role	Institution / Organization	Funding entity
2023 - Current	HORIZON-HLTH-2023-DISEASE-03 (REA, European Commission) Evaluator		European Commission
2018 - Current	External expert Evaluator		European Cooperation in Science and Technology
2018 - Current	Call for Research Proposals Evaluator		Biotechnology and Biological Sciences Research Council
2018 - Current	BBSRC (United Kingdom), Call for Research Proposals Evaluator
2018 - Current	COST Action (European Commission), Call for Research Proposals. Evaluator
2017 - Current	Call for Research Proposals Evaluator
2017 - Current	Marsden Fund Council (New Zealand) Call for Research Proposals Evaluator		Marsden Fund Council
2017 - Current	Marsden Fund Council (New Zealand), Research Proposal Call Evaluator
2015 - Current	Evaluation Panel on Experimental Biology and Biochemistry – PhD fellowships Evaluator	Fundação para a Ciência e a Tecnologia, Portugal	Fundação para a Ciência e a Tecnologia
2015 - Current	Fundação para a Ciência e a Tecnologia, Ministério da Ciência, Tecnologia e Ensino Superior, Member of the Evaluation Panel on Experimental Biology and Biochemistry – PhD fellowships Evaluator	Fundação para a Ciência e a Tecnologia, Portugal
2013 - Current	PhD Fellowships Evaluation National Science Centre of Poland Evaluator
2012 - Current	Project evaluation Agencia Nacional de Investigación e Innovación de Uruguay Evaluator
2021/01/01 - 2023/01/01	Evaluation of PhD fellowships Evaluator	Secretaria Regional do Mar, Ciência e Tecnologia, Região Autónoma Açores (Portugal), Portugal	Secretaria Regional do Mar, Ciência e Tecnologia, Região Autónoma Açores (Portugal)
2019 - 2023	FETOPEN Program ((European Commission), Monitoring of Research Project. Evaluator
2022/05/01 - 2022/07/31	HORIZON-EIC-2022-PATHFINDEROPEN-01, Call for Research Proposals Evaluator	European Innovation Council and SMEs Executive Agency, Belgium	European Innovation Council and SMEs Executive Agency
2019 - 2019	Monitoring of Research Project FETOPEN Program Evaluator		European Commission

Journal scientific committee

	Journal title (ISSN)	Publisher
2020/03 - Current	International Journal of Molecular Sciences (1422-0067)	MDPI AG
2017 - Current	MicrobiologyOpen (2045-8827)	Wiley (John Wiley & Sons)
2017 - Current	Scientific Reports (2045-2322)	Springer Science and Business Media LLC
2017 - Current	Comparative Biochemistry and Physiology (0010-406X)	Elsevier
2017 - Current	Journal of Proteomics (1874-3919)	Elsevier
2017 - Current	PROTEOMICS (1615-9861)	Wiley (John Wiley & Sons)
2017 - Current	BMC Veterinary Research (1746-6148)	Springer (Biomed Central Ltd.)
2017 - Current	Research in Veterinary Science (0034-5288)	Elsevier
2017 - Current	Journal of Mass Spectrometry (1096-9888)	Wiley (John Wiley & Sons)
2017 - Current	Oncotarget (1949-2553)	"Impact Journals, LLC "
2017 - Current	BMC Developmental Biology (1471-213X)	Springer (Biomed Central Ltd.)
2017 - Current	Talanta (0039-9140)	Elsevier
2017 - Current	Virulence (2150-5608)	Landes Bioscience
2017 - Current	Journal of Proteome Research
2017 - Current	Combinatorial Chemistry & High Throughput Screening (1386-2073)	Bentham Science
2017 - Current	Environmental Pollution (0269-7491)	Elsevier
2017 - Current	Aquatic Toxicology
2017 - Current	Metabolomics
2022/05/01 - 2033/01/01	Marine Science	Frontiers
2021/01/01 - 2023/12/31	International Journal of Molecular Sciences (1422-0067)	MDPI Publisher

Mentoring / Tutoring

	Topic	Student name
2018 - Current	Identification of novel antimicrobials	Laidson Paes Gomes
2019 - 2020	Phosphinic acid analogues of dicarboxylic acids as antibacterial molecules	F Giovannercole
2019 - 2019	Characterizing the stem-cell populations in starfishes through transcriptomic profiling	P Martinez
2016 - 2017	A proteogenomics approach towards the understanding of S. epidermidis pathogenicity	V Magalhães
2012 - 2016	ProteOMICS functional annotation of sea star tissues proteins during arm re-growth – Protein post-translational modifications (PTMs) dynamics in the regeneration events of echinoderms	C Franco
2010 - 2014	Identification of vaccine candidates against Ehrlichia ruminantium using high-throughput proteomic analysis: a complementary approach to genome-based strategies for an improved Heartwater vaccine development	I Marcelino
2009 - 2013	Program “Ciência 2008”	R. Soares
2009 - 2011	Desenvolvimento e validação métodos para caracterização e quantificação de péptidos	Kamila Koci
2008 - 2011	Transthyretin Misfolding and Aggregation in vivo: Molecular and Cellular Clues for Amyloidogenesis	Ricardo Gomes
2009 - 2010	Program Ciência 2008	Peter Imre Boross
2008 - 2009	Desenvolvimento e validação de métodos para caracterização e quantificação específica de biofármacos por espectrometria de massa de ionização suave	Renata Soares
2006 - 2009	Characterization of sea urchins temporary adhesives by mass-spectrometry-based proteomics	Romana Santos
2005 - 2008	Proteomic analysis of chloroplast differentiation in Zea mays L.	Alexandre M. O. Campos - POST-DOC