| Journal article |
- "Life goes on: Spatial heterogeneity promotes biodiversity in an urbanized coastal marine ecosystem". Global Change Biology
(2024):
10.1111/gcb.17248
- "Effects of bleaching on oxygen dynamics and energy metabolism of two Caribbean coral species". Science of The Total Environment
(2024):
10.1016/j.scitotenv.2024.170753
- "The First International eDNA Workshop in Hong Kong: A beginner's guide for the next-generation eDNA researcher". Environmental
DNA (2024):
10.1002/edn3.552
- "An integrative phylogeography for inferring cryptic speciation in the Alpheus lottini species complex, an important coral
mutualist". iScience (2024):
10.1016/j.isci.2024.111034
- "Adaptations to nitrogen availability drive ecological divergence of chemosynthetic symbionts". Plos Genetics (2024):
10.1371/journal.pgen.1011295
- "Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystems". ISME Communications
(2023):
10.1038/s43705-023-00333-6
- "Evaluating biodiversity for coral reef reformation and monitoring on complex 3D structures using environmental DNA (eDNA)
metabarcoding". Science of The Total Environment (2023):
10.1016/j.scitotenv.2022.159051
- "Metabarcoding the marine environment: from single species to biogeographic patterns". Environmental DNA (2022):
10.1002/edn3.270
- "Unresolved taxonomy confounds invasive species identification: the Lysmata vittata Stimpson, 1860 (Decapoda: Caridea: Lysmatidae)
species complex and recent introduction of Lysmata vittata sensu stricto in the western Atlantic". Journal of Crustacean
Biology (2022):
10.1093/jcbiol/ruab079
- "The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs". Communications Biology
(2022):
10.1038/s42003-022-03679-0
- "Pleistocene sea level changes and crocodile population histories on the Isthmus of Panama: A comment on Avila-Cervantes et
al. (2020)". Evolution (2022):
10.1111/evo.14610
- "MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment
of eukaryotic mitochondrial sequences". Environmental DNA (2022):
10.1002/edn3.303
- "p Two new species of Typton Costa, 1844 from tropical American waters, with taxonomic notes on T. tortugae McClendon, 1911
and a new record of T. granulosusAyon-Parente, Hendrickx & Galvan-Villa, 2015 (Decapoda: Caridea: Palaemonidae)". Zootaxa
(2021):
10.11646/zootaxa.4950.2.3
- "Trade-offs between reducing complex terminology and producing accurate interpretations from environmental DNA: Comment on
"Environmental DNA: What's behind the term?" by Pawlowski et al., (2020)". Molecular ecology (2021):
10.1111/mec.15942
- "A new species of Alpheus Fabricius, 1798 (Decapoda: Caridea: Alpheidae) from the Caribbean coast of Panama". Zootaxa
(2021):
10.11646/zootaxa.4933.3.5
- "The Coral Reef Sentinels Program: A Mars Shot for Blue Planetary Health". Marine Technology Society Journal (2021):
10.4031/MTSJ.55.3.51
- "Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups". Proceedings
of the National Academy of Sciences of the United States of America (2021):
10.1073/pnas.2104378118
- "Natural experiments and long-term monitoring are critical to understand and predict marine host-microbe ecology and evolution".
Plos Biology (2021):
10.1371/journal.pbio.3001322
- "Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef". Nature Communications (2021):
10.1038/s41467-021-24777-3
- "Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape". Scientific
Reports (2020):
10.1038/s41598-020-63565-9
- "Seabed mining could come at a high price for a unique fauna". Molecular ecology (2020):
10.1111/mec.15678
- "New findings of the stenopodidean shrimp Microprosthema looensis Goy & Felder, 1988 (Decapoda: Stenopodidea: Spongicolidae)".
Zootaxa (2020):
10.11646/zootaxa.4729.3.11
- "REPLY TO LOCATELLI ET AL.: Evaluating species-level accuracy of GenBank metazoan sequences will require experts' effort
in each group". Proceedings of the National Academy of Sciences of the United States of America (2020):
10.1073/pnas.2019903117
- "Host-associated microbiomes drive structure and function of marine ecosystems". PLoS biology (2019):
10.1371/journal.pbio.3000533
- "GenBank is a reliable resource for 21st century biodiversity research". Proceedings of the National Academy of Sciences
of the United States of America (2019):
10.1073/pnas.1911714116
- "Recent and old duplications in crustaceans "Internal Transcribed Spacer 1¿: structural and phylogenetic implications".
Molecular biology reports (2019):
10.1007/s11033-019-04976-4
- "Dietary partitioning promotes the coexistence of planktivorous species on coral reefs". Molecular ecology (2019):
10.1111/mec.15090
- "Hyperdiverse Macrofauna Communities Associated with a Common Sponge, Stylissa carteri, Shift across Ecological Gradients
in the Central Red Sea". Diversity (2019):
10.3390/d11020018
- "Host-associated microbiomes and their roles in marine ecosystem functions". PeerJ (2019):
10.7287/peerj.preprints.27930v1
- "Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism". Proceedings
of the Royal Society B: Biological Sciences (2018):
10.1098/rspb.2018.1307
- "Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority". Scientific
Reports (2018):
10.1038/s41598-018-26332-5
- "Five new records of marine shrimps (Decapoda: Caridea, Stenopodidea) from the Caribbean coast of Panama". Zootaxa
(2018):
10.11646/zootaxa.4438.1.5
- "MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database".
Bioinformatics (Oxford, England) (2018):
10.1093/bioinformatics/bty454
- "Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples". Scientific
Data (2017):
10.1038/sdata.2017.27
- "Molecular characterization reveals the complexity of previously overlooked coral-exosymbiont interactions and the implications
for coral-guild ecology". Scientific Reports (2017):
10.1038/srep44923
- "Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding". PeerJ (2017):
10.7717/peerj.3006
- "The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures
(ARMS) and metabarcoding to measure cryptic diversity on Mo'orea coral reefs, French Polynesia". PLOS ONE (2017):
10.1371/journal.pone.0175066
- "Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the northern
Red Sea". Genome (2016):
10.1139/gen-2015-0208
- "Censusing marine eukaryotic diversity in the twenty-first century". Philosophical Transactions of the Royal Society of
London. Series B, Biological Sciences (2016):
10.1098/rstb.2015.0331
- "Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to
their highly partitioned, generalist diet". PeerJ (2015):
10.7717/peerj.1047
- "DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity". Proceedings of the
National Academy of Sciences of the United States of America (2015):
10.1073/pnas.1424997112
- "Effectiveness of Annealing Blocking Primers versus Restriction Enzymes for Characterization of Generalist Diets: Unexpected
Prey Revealed in the Gut Contents of Two Coral Reef Fish Species". PLoS ONE (2013):
10.1371/journal.pone.0058076
- "A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity:
application for characterizing coral reef fish gut contents". Frontiers in Zoology (2013):
10.1186/1742-9994-10-34
- "Moorea BIOCODE barcode library as a tool for understanding predator-prey interactions: insights into the diet of common predatory
coral reef fishes". Coral Reefs (2012):
10.1007/s00338-011-0845-0
- "Housekeeping Mutualisms: Do More Symbionts Facilitate Host Performance?". Plos One (2012):
10.1371/journal.pone.0032079
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