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Ana Filipa Filipe is a Auxiliar Researcher at Instituto Superior de Agronomia (Universidade de Lisboa). Completed her PhD in Ecology in 2010 by Universidade de Lisboa and graduated in Biology in 1998 by the same faculty. Published 44 articles in peer-reviewed highly cited journals, 4 book chapters and 4 books. Ana Filipa is principal investigator of the project 'AQUADAPT - Promoting riverine ecosystems resilient to climate change for a sustainable management ' (funded by Fundacion La Caixa; Promove PD20-00008), and was principal investigator of the project 'FRESHING: Next-generation biomonitoring: freshwater bioassessment and species conservation improved with metagenomics' (funded by FCT; PTDC/AAG-MAA/2261/2014), and participated as a researcher in 18 projects. Revised articles from more than 20 research ISI indexed journals. Ana Filipa is associate editor of Diversity and Distributions (DDI) and Frontiers Ecology and Evolution journals, and subject editor of Metabarcoding and Metagenomics (MbMg) journal. Gave 51 oral presentations in congresses, seminars and workshops. Organized 11 scientific events. Co-supervised 2 PhD thesis and 2 Master thesis, and supervises 1 Master thesis. Works in Natural Sciences with emphasis on Freshwater Ecology, Biodiversity Conservation and Evolutionary Biology. Also works as a scientific illustrator since 2000 and produces ilustrations and maps for science communication. She received 6 awards and honors. In Ciência Vitae the most frequent terms in the context of scientific outputs are: Biodiversity, Ecology, Genetics, Freshwater Biodiversity, Monitoring, Conservation, Fish, Macroinvertebrates, Mussels, Streams and Rivers (updated 19-2-2024).
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Identification

Personal identification

Full name
Ana Filipa da Silva Pereira Machado Filipe

Citation names

  • Filipe, Ana Filipa

Author identifiers

Ciência ID
AC1E-1FEE-30D5
ORCID iD
0000-0001-7862-2676
Google Scholar ID
2AcpLhMAAAAJ&hl
Researcher Id
B-5573-2008
Scopus Author Id
7003735153

Email addresses

  • affilipe@isa.ulisboa.pt (Professional)

Addresses

  • Centro de Estudos Florestais, Instituto Superior de Agronomia. Tapada da Ajuda, 1349-017, Lisboa, Lisboa, Portugal (Professional)
  • Rua Tenente Espanca nº31 4ºC, 1050-220, Lisboa, Lisboa, Portugal (Personal)

Knowledge fields

  • Natural sciences - Biological Sciences - Biodiversity Conservation
  • Natural sciences - Biological Sciences - Freshwater Biology
  • Natural sciences - Earth and Environmental Sciences - Environmental Sciences
  • Natural sciences - Biological Sciences - Evolutionary Biology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Spanish; Castilian Advanced (C1) Proficiency (C2) Proficiency (C2) Proficiency (C2)
French Intermediate (B1) Advanced (C1) Advanced (C1) Upper intermediate (B2)
Catalan Intermediate (B1) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
2010/04
Concluded
 Biologia (Doutoramento)
Major in Especialidade: Ecologia
Universidade de Lisboa, Portugal
"Patterns and Processes of Freshwater Fish Distribution and Diversity in the Iberian Peninsula" (THESIS/DISSERTATION)
1998
Concluded
 Biology (Licenciatura)
Universidade de Lisboa Faculdade de Ciências, Portugal
"Spatial modelling of the distribution of freshwater species, in two seasons of the hydrological regime of the lower part of the Guadiana River Basin (Portugal)" (THESIS/DISSERTATION)
 17
Affiliation

Science

Category
Host institution 		Employer
2021/04/01 - Current Auxiliary Researcher (Research) Universidade de Lisboa Instituto Superior de Agronomia, Portugal
Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2016/06/01 - 2019/12/31 Contracted Researcher (Research) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2010/06/01 - 2012/07/31 Auxiliary Researcher (Research) Universitat de Barcelona Departament de Biologia Animal, Spain
2002/05/01 - 2004/06/30 Invited Auxiliary Researcher (Research) Instituto da Conservação da Natureza e das Florestas, Portugal

Others

Category
Host institution 		Employer
2013/01/01 - 2016/05/31 PostDoc researcher (Biology, Ecology) under the Sabor LTER project (LTER/BIA-BEC/0004/2009; FCT) grant by EDP Biodiversity Chair Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2010/06/01 - 2012/07/31 PostDoc researcher (Biology, Ecology) under the BioFresh project (EU FP7 Environment including Climate Change, Contract No. 226874) Universitat de Barcelona Facultat de Biologia, Spain
2004/07/01 - 2010/05/31 PhD student (grant SFRH/BD/10330/2002 by Science and Technology Foundation, FCT) Centro de Ecologia Evolução e Alterações Ambientais, Portugal
2008/07/01 - 2009/06/30 Researcher (Biology, Ecology) under the GENESTREAM project (;SFRH/BD/10330/2002) Centro de Ecologia Evolução e Alterações Ambientais, Portugal
2002/05/01 - 2004/06/30 Researcher (Biology, Ecology) under the LVVP project (EU FEDER and Nature Conservation Institute (ICN, Portugal) Instituto da Conservação da Natureza e das Florestas, Portugal
1999/01/01 - 2002/04/30 Researcher (Biology, Ecology) under the EDIA-Alqueva Dam project (grant awarded by the Foundation of FCUL) Centro de Ecologia Evolução e Alterações Ambientais, Portugal
Projects

Grant

Designation Funders
2016/11 - 2021/01/01 DNAquaNet - Developing new genetic tools for bioassessment of aquatic ecosystems in Europe. EU COST Action (CA15219)
8875
Researcher
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
 European Commission Seventh Framework Programme for Research and Technological Development Environment
Ongoing
2016 - 2021 SMIRES - Science and Management of Intermittent Rivers and Ephemeral Streams. COST Action (CA15113)
CA15113
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
 European Commission
2015/09 - 2020/08 ENVMETAGEN - Capacity Building at InBIO for Research and Innovation Using Environmental Metagenomics
668981
Researcher
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
 European Commission
2019 - 2020 sYNGEO - The geography of synchrony in dendritic networks: understanding the causes, dynamics, and consequences across multiple scales
X
Researcher
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
 German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig
2016/01 - 2019/12 TrophicResponse –Trophic responses to macroecological gradients
Provided by PTCRIS: 138944
Researcher
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2016/03 - 2019/02 Next-generation biomonitoring: freshwater bioassessment and species conservation improved with metagenomics
Provided by PTCRIS: 140887
 Fundação para a Ciência e a Tecnologia
2016/01 - 2018/12 FRESHCO - Multiple implications of invasive species on Freshwater Mussel coextinction processes.
Provided by PTCRIS: 140252
Researcher
Universidade dos Açores Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal

Universidade de Trás-os-Montes e Alto Douro, Portugal

Universidade do Minho, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2011/07 - 2014/12 SABOR FRAGMENTATION EXPERIMENT: UNDERTANDING LONG-TERM ECOLOGICAL CONSEQUENCES OF INFRASTRUCTURE DEVELOPMENT AND COMPENSATORY MITIGATION (SABOR-LTER)
info:eu-repo/grantAgreement/FCT/3599-PPCDT/109443/PT
Researcher
Fundação para a Ciência e a Tecnologia

EDP, Electicidade Portugal
Concluded
2011/07 - 2014/12 SABOR FRAGMENTATION EXPERIMENT: UNDERTANDING LONG-TERM ECOLOGICAL CONSEQUENCES OF INFRASTRUCTURE DEVELOPMENT AND COMPENSATORY MITIGATION (SABOR-LTER)
Provided by PTCRIS: 109443
 Fundação para a Ciência e a Tecnologia
2009/11 - 2014/04 BIOFRESH - Biodiversity of Freshwater Ecosystems: Status, Trends, Pressures, and Conservation Priorities
226874
Researcher
European Commission
2008/01 - 2011/03 GENESTREAM. Landscape genetics of freshwater fishes: the geographical dimension of genetic diversity
66519
Provided by PTCRIS: 66519
 Fundação para a Ciência e a Tecnologia, I.P.
2004/07/01 - 2008/06/30 PATTERNS AND PROCESSES OF FRESHWATER FISH DISTRIBUTION AND DIVERSITY IN THE IBERIAN PENÍNSULA
SFRH/BD/10330/2002
Universidade de Lisboa Faculdade de Ciências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
1997 - 2000 LIFE-Saramugo: Conservation strategy for saramugo (Anaecypris hispanica), a highly endangered fish endemism
B4-32000/97/280
Researcher
Centro de Ecologia Evolução e Alterações Ambientais, Portugal
 European Commission
Concluded

Contract

Designation Funders
2017/03/17 - Current LifeWatch Portugal - E-Science European Infrastructure for Biodiversity and Ecosystem Research (LifeWatch) / Consortium: LifeWatch
info:eu-repo/grantAgreement/AKA/271628/FI
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
 European Commission
Ongoing
2021/04/01 - 2027/03/31 Promoting resilience to invasion in riverscapes
2020.03872.CEECIND/CP1591/CT0003
10.54499/2020.03872.CEECIND/CP1591/CT0003
Universidade de Lisboa Instituto Superior de Agronomia, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2021/04/01 - 2024/03/31 AQUADAPT - Promoting riverine ecosystems resilient to climate change for a sustainable management / Ecossistemas fluviais à prova de alterações climáticas para uma gestão sustentável’
PD20-00008 (Promove 2020)
Integration into Research Grant Fellow
Caixa d'Estalvis i Pensions de Barcelona
Ongoing
2021/03/29 - 2024/03/28 DESVENDAR OS DETERMINANTES E IMPACTOS DAS ESPÉCIES INVASORAS NUM MUNDO EM MUDANÇA<br>
PTDC/BIA-ECO/0207/2020
Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal

Universidade de Lisboa Instituto de Geografia e Ordenamento do Território, Portugal

Universidade de Évora, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2018 - 2021 Reviving Douro Basin
RNC2050
Researcher
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
 MAVA Foundation
Ongoing
2018 - 2020 TerraSeixe: Gestão Ambiental Partilhada no Sudoeste de Portugal
x
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2019/01/01 - 2019/12/31 Research Network in Biodiversity and Evolutionary Biology
UID/BIA/50027/2019
Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Universidade de Lisboa Instituto Superior de Agronomia, Portugal

Fundação Gaspar Frutuoso, Portugal

Universidade do Minho Laboratório de Paisagens Património e Território, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2016/06/01 - 2019/11/30 Próxima geração da monitorização da biodiversidade: avaliação da qualidade ecológica e conservação das espécies utilizando metagenómica
PTDC/AAG-MAA/2261/2014
 Fundação para a Ciência e a Tecnologia
Concluded
2011/01/01 - 2013/12/31 Strategic Project - UI 4006 - 2011-2012
PEst-OE/AMB/UI4006/2011
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade do Porto Faculdade de Engenharia, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2008/01/01 - 2011/03/31 GENESTREAM. Genética da paisagem em peixes de água doce: a dimensão geográfica da diversidade genética
PTDC/BIA-BDE/66519/2006
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2004/07/01 - 2008/06/30 PATTERNS AND PROCESSES OF FRESHWATER FISH DISTRIBUTION AND DIVERSITY IN THE IBERIAN PENÍNSULA
SFRH/BD/10330/2002
Universidade de Lisboa Faculdade de Ciências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2002 - 2004 Red Data Book - Development of a database with spatial components in a GIS and application of the IUCN criteria for the development of the Red Data Book about freshwater and migratory fish of Portugal
X
Researcher
Instituto da Conservação da Natureza e das Florestas, Portugal
 Environmental Program, FEDER
1999 - 2002 Monitoring program of the environmental impacts of the Alqueva and Pedrogão dams
X
Researcher
Centro de Ecologia Evolução e Alterações Ambientais, Portugal
 EDIA - Development and Infrastructure of Alqueva
Concluded
1999 - 2000 Minimization and compensation program of the environmental impacts of the Alqueva and Pedrogão dams: Biology and ecology studies for freshwater fish
X
Researcher
Centro de Ecologia Evolução e Alterações Ambientais, Portugal
 EDIA - Development and Infrastructure of Alqueva
Outputs

Publications

Book
  1. Magalhães, Maria; Amaral, Susana Dias; Sousa, Mónica; Alexandre, Carlos M.; Almeida, P.R.; Alves, Maria Judite; Cortes, Rui Manuel Vitor; et al. Livro Vermelho dos Peixes Dulciaquícolas e Diádromos de Portugal Continental. Portugal. 2023.
    Published
  2. Magalhães, Maria Filomena; Amaral, Susana Dias; Sousa, Mónica; Alexandre, Carlos Manuel; Raposo de Almeida, Pedro; Alves, Maria Judite; Cortes, Rui; et al. Livro Vermelho dos Peixes Dulciaquícolas e Diádromos de Portugal Continental. ICNF. 2023.
  3. Collares-Pereira, M.J.; Alves, Maria Judite; Ribeiro, Filipe; Domingos, Isabel; de Almeida, Pedro; da Costa, Luis; Gante, Hugo; et al. Guia dos peixes de água doce e migradores de Portugal Continental. Porto, Portugal: Edições Afrontamento, Porto. 2021.
    Published
  4. Collares-Pereira, M.J.; Filipe, Ana Filipa; Moreira Da Costa, L.. Os peixes do Rio do Guadiana: Que futuro? Guia dos peixes do Guadiana Português.. Chamusca: Cosmos. 2008.
    Published
Book chapter
  1. Anastácio, P.M.; Ribeiro, F.; Sousa, R.; Capinha, C.; Banha, F; Gama, A.M.; Filipe, Ana Filipa (A. "Animais Invasores em Ecossistemas Dulçaquícolas". In As invasões biológicas em Portugal: História, diversidade e gestão, edited by Vicente, J.R.; Queiroz, A.I.; Silva, L.; Marchante, E.; Honrado, J.P.; Vaz, A. S., 1-2. Porto, Portugal: Arte e Ciência - Universidade do Porto, 2018.
    Published
  2. Filipe, Ana Filipa. "Podem as gambúsias combater epidemias transmitidas pelas picadas dos mosquitos?". In As invasões biológicas em Portugal: História, diversidade e gestão, edited by Vicente, JR; Queiroz, A.I.; Silva, L.; Marchante, E.; Honrado, J.P.; Vaz, A.S., 200. Porto, Portugal: Arte e Ciência - Universidade do Porto, 2018.
    Published
  3. Filipe, Ana Filipa. "A perca-sol: de animal de estimação a especie invasora.". In As invasões biológicas em Portugal: História, diversidade e gestão, edited by Vicente, J.R.; Queiroz, A.I.; Silva, L.; Marchante, E.; Honrado, J.P.; Vaz, A.S., 200. Portugal: Arte e Ciência - Universidade do Porto, 2018.
    Published
  4. Rogado, Leonor; Alexandrino, P.J.; Almeida, P.R.; Alves, M.J.; Bochechas, J.; Cortes, R.V.; Domingos, M.I.; et al. "Peixes dulciaquicolas e migradores". In Livro Vermelho dos Vertebrados de Portugal, edited by Cabral, M.J.; Almeida, J.; Almeida, Pedro R.; Dellinger, T.; Ferrand de Almeida, N.; Oliveira, M.E.; Palmeirim, J.M.; et al, 57-114. Lisboa, Portugal: Instituto da Conservação da Natureza, 2006.
    Published
Conference abstract
  1. Da Silva, J. P.; Gonçalves, Duarte Vasconcelos; Lopes-Lima, Manuel; Filipe, Ana Filipa; Sousa, Ronaldo. "Predicting future range shifts to a critically endangered freshwater mussel in Europe: the importance of including fish hosts". Paper presented in Euromal 2021, 9th European Congress of Malacological Societies, Prague, 2021.
    Published
  2. Filipe, Ana Filipa; Garcia-Raventós, Aina; Martins, F.M.S; Matcher, J.; Galhardo, M.; Teixeira, A.; Sousa, R.; et al. "Optimizing detection of freshwater fish using eDNA metabarcoding in the Douro Basin (Portugal)". Paper presented in Symposium 2019: Advances in eDNA-based Approaches to Fish Ecology and Management. Fisheries Society of the British Isles, Hull, 2019.
    Published
  3. Filipe, Ana Filipa; Garcia-Raventós, A.; Martins, F.M.S.; Macher, J.; Galhardo, M.; Teixeira, A.; Sousa, R.; et al. "Optimizing freshwater fish detection with eDNA metabarcoding". Paper presented in 11th Symposium for European Freshwater Sciences. Special Session: Research needs for European water and nature directives, Zagreb, 2019.
    Published
  4. Garcia-Raventós, A.; Martins, F.M.S.; Teixeira, A.; Sousa, R.; Froufe, E.; Varandas, S.; Lopes-Lima, M.; Beja, P.; Filipe, Ana Filipa. "The role of human in the distribution of Phoxinus (Cyprinidae): tracking introduction pathways and first molecular evidences of the European minnow in the Douro Basin (Iberian Peninsula)". Paper presented in Special Session: Invasive species. 11th Symposium for European Freshwater Sciences, Zagreb, 2019.
    Published
  5. Filipe, Ana Filipa; Garcia-Raventós, A.; Martins, F.M.S.; Paupério ,J.; Ferreira, S.; Magalhães, M.F.; Beja, P.. "Monitoring freshwaters using eDNA metabarcoding". Paper presented in Symposium for the Conservation of Freshwater Fish and Habitat Rehabilitation, 2018.
    Published
  6. Moreira, F.; Beja, P.; Filipe, Ana Filipa; Brotons, L.; Clavero, M.; Thompson, J.; Russo, D.; et al. "Overall (first) results, of the ‘100 questions for biodiversity conservation in Mediterranean-type regions of the world’ initiative". Paper presented in ECCB2018, 5th European Congress of Conservation Biology, Jyväskylä, 2018.
    Published • 10.17011/conference/eccb2018/107264
  7. Filipe, Ana Filipa; Martins, F.M.S.; Ramião, J.P.; Garcia-Raventós, A.; Paupério, J.; Ferreira, S.; Hermoso, V.; et al. "Delineating freshwater monitoring networks using eDNA metabarcoding". Paper presented in AIL XIX Conference of the Iberian Association of Limnology, 2018.
    Published
  8. Martins, F.M.S; Galhardo, M.; Teixeira, A.; Pinheiro, P.; Filipe, Ana Filipa; Alves, P.C.; Beja, P.. "The use of molecular tools on preservative ethanol of macroinvertebrate bulks for biodiversity assessment". Paper presented in AIL XIX Conference of the Iberian Association of Limnology, Comibra, 2018.
    Published
  9. Garcia-Raventós, A.; Martins, F.M.S.; Magalhães, M.F.; Ramião, J.P.; Ferreira, M.; Carona, S.; Carvalho, Francisco; et al. "Multiple introductions and first record of Phoxinus phoxinus in the Douro Basin revealed with molecular data". Paper presented in AIL XIX Conference of the Iberian Association of Limnology, Coimbra, 2018.
    Published
  10. Beja, P.; Ancilloto, L.; Arianoutsou, M.; Brotons, L.; Clavero, M.; Dimitrakopoulos, P.G.; Filipe, Ana Filipa; et al. "Priority questions for biodiversity conservation in the Mediterranean Basin". Paper presented in ECCB2018, 5th European Congress of Conservation Biology, Jyväskylä, 2018.
    Published
  11. Martins, Filipa; Galhardo, M.; Teixeira, Amílcar; Pinheiro, Paulo; Filipe, Ana Filipa; Alves, Paulo Célio; Beja, Pedro. "Improving freshwater biodiversity assessment: application of molecular tools on preservative ethanol from macroinvertebrate bulks". 2018.
    Published
  12. Teixeira, A.; Dias, A.; Miranda, F.; Lopes-Lima, M.; Froufe, E.; Filipe, Ana Filipa; Beja, P.; Sousa, R.. "Can invasive alien fish species act as effective hosts of native freshwater mussels (Unionidae) in Iberia?". Paper presented in SIBIC Iberian Congress of Ichthyology, Faro, 2018.
    Published
  13. Filipe, Ana Filipa; Martins, F.M.S.; Paupério ,J.; Ferreira, S.; Magalhães, M.F.; Hermoso, V.; Monaghan, M.T.; Jarman, S.; Beja, P.. "From riverscapes to lab: delineating monitoring networks of biotic indices using new genetic tools under multiple stressors". Paper presented in SEFS 10. 10th Symposium for European Freshwater Sciences. Special Session: DNAquaNet., Olomouc, 2017.
    Published
  14. Filipe, Ana Filipa; Quaglietta, L.; Ferreira, M.; Magalhães, M.F.. "Accounting for stream pathways improves species distribution models of invasive crayfishes". Paper presented in Iberian Association of Limnology AIL Congress, Tortosa, 2016.
    Published
  15. Beja, P.; Paupério, J.; Martins, F.M.S; Verissimo, J.; Filipe, Ana Filipa; Rebelo, H.; Mata, V.; et al. "Barcoding LTER biodiversity: a case study and applications in LTER Sabor (Portugal)". Paper presented in ILTER Open Science Meeting 2016, Kruger, 2016.
    Published
  16. Filipe, Ana Filipa; Bonada, N.; Amalfitano, S.; Artigas, J.; Bernal, S.; Cooper, S.D.; Dallas, H.; et al. "Challenges and opportunities for research and management in Mediterranean-climate rivers. Plenary lecture". Paper presented in SIL congress XXXIII, Torino, 2016.
    Published
  17. Bonada, N.; Amalfitano, S.; Artigas, J.; Bernal, S.; Cooper, S.D.; Dallas, H.; Davies, P.; et al. "Challenges and opportunities for research and management in mediterranean climate rivers: contributions by Professor Vincent H. Resh. Plenary lecture". Paper presented in SFS Society for Freshwater Science Annual Meeting, Raleigh, NC, 2016.
    Published
  18. Paupério, J.; Grosso-Silva, J.M.; Martins, F.M.S; Verissimo, J.; Filipe, Ana Filipa; Penado, A.; Mata, V.; et al. "DNA barcoding of Portuguese terrestrial Arthropods using NGS". Paper presented in Encontro sobre Biodiversidade e Conservação de Invertebrados em Portugal, Seia, 2015.
    Published
  19. Filipe, Ana Filipa; Hermoso, V.; Segurado, P.; Beja, P.. "Conservation planning of freshwater biodiversity using coarse datasets: how much current protected areas in Iberian Peninsula protect freshwater biodiversity?". Paper presented in ? V Iberian Congress of Ichthyology - Know to Preserve, Lisboa, 2014.
    Published
  20. Pires, D.F; Filipe, Ana Filipa; Beja, P.; Magalhães, M.F.. "Interactive effects of habitat quality and connectivity on Mediterranean stream fish after the summer drought". Paper presented in V Iberian Congress of Ichthyology – Know to Preserve, Lisboa, 2014.
    Published
  21. Beja, P.; Filipe, Ana Filipa. "Interactions between LTER sites and business corporations: understand benefits and threats through an online-survey". Paper presented in 21st annual ILTER meeting, Seoul, 2013.
    Published
  22. Ferreira, M.; Filipe, Ana Filipa; Magalhães, M.F.; Beja, P.. "Accounting for detectability in freshwater species distribution models: An approach based on time to first detection". Paper presented in EFS 2013, Symposium for European Freshwater Sciences. Session ‘Models of Freshwater Ecosystems: advances, challenges and new applications’, Münster, 2013.
    Published
  23. Filipe, Ana Filipa; Markovic, D.; Pletterbauer, F.; Tisseuil, C.; De Wever, A.; Schmutz, S.; Bonada, N.; Freyhof, J.. "Where cold water species will be at higher risk? The case of Salmo trutta distribution cross temperate and mediterranean stream basins". Paper presented in SIBIC2012 - IV Jornadas Ibéricas de Ictiología, Girona, 2012.
    Published
  24. Bonada, N.; Filipe, Ana Filipa; Finn, D.. "Regional extinction risk of freshwater biota in mediterranean and temperate climate regions". Paper presented in Congress of the Iberian Society of Limnology, Guimarães, 2012.
    Published
  25. Filipe, Ana Filipa; Feio, M.J.; Bonada, Nuria. "Using a community-level method for forecasting climate change impacts in freshwater fish". Paper presented in XVIth Congress of the Iberian Society of Limnology, Guimarães, 2012.
    Published
  26. Filipe, Ana Filipa; Markovic, D.; Pletterbauer, F.; Tisseuil, C.; De Wever, A.; Schmutz, S.; Bonada, N.; Freyhof, J.. "Salmo trutta in Mediterranean and temperate European river drainages: forecasting future distribution patterns". Paper presented in International Congress SEFS, Symposium for European Freshwater Sciences, Girona, 2011.
    Published
  27. Filipe, Ana Filipa; Magalhaes, M.F.; Collares-Pereira, M.J.. "Understanding native and invasive fish species richness across mediterranean landscapes". Paper presented in The 9th International Congress on the Biology of Fish. Symposium of Fish Habitat Improving Connectivity, Barcelona, 2010.
    Published
  28. Filipe, Ana Filipa; Magalhaes, M.F.; Ribeiro, F.V.; Pires, D.; Collares-Pereira, M.J.. "Regional influences on local richness of fish assemblages at the Western Iberian drainages: is there room for more species?". Paper presented in Ecology of stream fish: state of the art and future prospects – Symposium II., Leon, 2006.
    Published
  29. Ribeiro, F.V.; Moreira Da Costa, L.; Tiago, P.; Filipe, Ana Filipa; Collares-Pereira, M.J.. "On the biology and ecology studies of freshwater fish at Alqueva and Pedrogão region". Paper presented in Biology works at Alqueva: Nature FCT::SIG Curriculum Vitae https://sig.fct.pt/fctsig/cv/presentation.PT/overview.aspx 6 de 9 24/02/2020, 09:12Conservation at Alqueva, Évora, 2003.
    Published
  30. Ribeiro, Filipe; Seabra, S.; Tiago, P.; Marques, T.A.; Filipe, Ana Filipa; Moreira Da Costa, L.; Collares-Pereira, M.J.. "Bio-ecology aspects of diploid and triploid of Leuciscus alburnoides complex (pisces, Cyprinidae) in Guadiana Basin". Paper presented in X Congress of Spanish Association of Limnology and II Iberian Congress of Limnology, Valência, 2000.
    Published
  31. Tiago, P.; Marques, T.A.; Filipe, Ana Filipa; F91F-2065-A41C; Seabra, S.; Collares-Pereira, M.J.. "The Exotic ichthyofauna of Guadiana Basin: actual situation". Paper presented in 1st symposium about alien species, Lisboa, 2000.
    Published
  32. Collares-Pereira, MJ.; Filipe, Ana Filipa; Ribeiro, F.; Tiago, P.; Silva, R.; Seabra, S.; Marques, T.A.; Cowx, I.G.. "Freshwater fish community in Guadiana Basin of Portugal: the conservation status". Paper presented in Reunion of scientific works in Alqueva region, Beja, 2000.
    Published
  33. Filipe, Ana Filipa; Cowx, I.G.; Collares-Pereira, M.J.. "Spatial modelling of the distribution of some endemic Cyprinids of Guadiana Basin. Some aspects for conservation strateg". Paper presented in 4th National Meeting of Ecology Aveiro of the Portuguese Ecological Society, 1999.
    Published
  34. Filipe, Ana Filipa; Cowx, I.G.; Collares-Pereira, M.J.. "Spatial modelling of endangered cyprinid species distribution in a semi-arid river system: a tool for conservation". Paper presented in Mediterranean Stream Fish Ecology and Conservation Workshop, Rhodes, 1999.
    Published
  35. Filipe, Ana Filipa; Moreira Da Costa, L.; Rogado, L.; Ribeiro, F.; Tiago, P.; Cowx, I.G.; Collares-Pereira, M.J.. "Environmental constrains of threatened endemic fishes of Portuguese Guadiana Basin". Paper presented in 1st Iberian Congress of Limnology / IX Spanish Congress of Limnology: Conservation and Management of Hydric Resources of Iberian Peninsula, Évora, 1998.
    Published
Conference paper
  1. Maria João Collares-Pereira; Maria Judite Alves; Filipe Ribeiro; Isabel M. Domingos; Pedro Raposo de Almeida; Luís Moreira da Costa; Hugo F. Gante; et al. "A First Guide to Freshwater and Diadromous Fish in Portugal". 2022.
    10.3390/blsf2022013142
  2. Ana Filipa Filipe; José M. Santos; Paulo Branco; Maria Teresa C de Melo; Rodrigo Proença de Oliveira; Susana Fernandes; Maria Helena Alves; et al. "Climate-Change-Proof Riverine Ecosystems for Sustainable Management: The AQUADAPT Project". 2022.
    10.3390/blsf2022013136
  3. Ferreira, M.; Filipe, Ana Filipa; Magalhães, M.F.; Beja, P.. "Accounting for detectability in fish distribution models: an approach based on time-to-first-detection". Paper presented in XV European Congress of Ichthyology, 2015.
    Published • 10.3389/conf.fmars.2015.03.00235
Conference poster
  1. Tiago, P.; Ribeiro, Filipe; da Costa L.; Filipe, Ana Filipa; Collares-Pereira, M.J.. "Spatial variation in growth and life history traits in Chondrostoma willkommii (Osteichthys, Cyprinidae) in Portuguese freshwaters". Paper presented in XI European Congress of Ichthyology - ECI XI, 2004.
Journal article
  1. Diane S. Srivastava; Joana Bernardino; Ana Teresa Marques; António Proença-Ferreira; Ana Filipa Filipe; Luís Borda-de-Água; João Gameiro. "Editors are biased too: An extension of Fox et al. (2023)'s analysis makes the case for triple-blind review". Functional Ecology (2024): https://doi.org/10.1111/1365-2435.14483.
    10.1111/1365-2435.14483
  2. Janine P. da Silva; Virgilio Hermoso; Manuel Lopes-Lima; Rafael Miranda; Ana Filipa Filipe; Ronaldo Sousa. "The role of connectivity in conservation planning for species with obligatory interactions: Prospects for future climate scenarios". Global Change Biology (2024): https://doi.org/10.1111/gcb.17169.
    10.1111/gcb.17169
  3. Miriam Colls; Aida Viza; Aitziber Zufiarre; Alba Camacho-Santamans; Alex Laini; Alexia Maria González-Ferreras; Ana Filipa Filipe; et al. "Impacts of diffuse urban stressors on stream benthic communities and ecosystem functioning: A review". Limnetica (2023): https://doi.org/10.23818/limn.43.07.
    10.23818/limn.43.07
  4. Janine P. da Silva; Duarte Vasconcelos Gonçalves; Aina Garcia-Raventós; Manuel Lopes-Lima; Simone Varandas; Elsa Froufe; Amílcar Teixeira; et al. "Joint species distribution models unveil co-occurrences between freshwater mussels and their fish hosts". Journal of Biogeography (2023): https://doi.org/10.1111/jbi.14565.
    10.1111/jbi.14565
  5. Janine P. Silva; Duarte Vasconcelos Gonçalves; Manuel Lopes-Lima; Pedro M. Anastácio; Filipe Banha; Emmanuel Frimpong; Mafalda Gama; et al. "Predicting climatic threats to an endangered freshwater mussel in Europe: The need to account for fish hosts". Freshwater Biology (2022): https://doi.org/10.1111/fwb.13885.
    10.1111/fwb.13885
  6. Amoussou, Toundji O.; Millogo, Vinsoun; Filipe, Ana F.; Kunda, Chibuye F.; Njé, Dorothé Y.; Alhassan, Elliot H.. "Anticipating the Effects of Increasing Rivers’ Water Salinity for Sustainable Conservation of Tilapia Resources in Rural Coastal Zone of Benin, West Africa". Tanzania Journal of Science 47 5 (2022): 1890-1900. http://dx.doi.org/10.4314/tjs.v47i5.33.
    10.4314/tjs.v47i5.33
  7. Martins, Filipa M.S.; Feio, Maria J.; Porto, Miguel; Filipe, Ana F.; Bonin, Aurélie; Serra, Sónia R.Q.; Alves, Paulo C.; Taberlet, Pierre; Beja, Pedro. "Assessing changes in stream macroinvertebrate communities across ecological gradients using morphological versus DNA metabarcoding approaches". Science of The Total Environment 797 (2021): 149030. http://dx.doi.org/10.1016/j.scitotenv.2021.149030.
    10.1016/j.scitotenv.2021.149030
  8. Kaletova, T.; Rodriguez-Lozano, P.; Berger, E.; Filipe, Ana Filipa; Logar I.; Alves, M.H.; Calleja, E.J.; Jorda-Capdevila, D.. "Considering temporal flow variability of non-perennial rivers in assessing ecosystem service provision". Ecosystem Services 52 (2021): 101368. https://doi.org/10.1016/j.ecoser.2021.101368.
    Open access • Published
  9. Hermoso, Virgilio; Filipe, Ana Filipa. "Offsetting connectivity loss in rivers: Towards a no-net-loss approach for barrier planning". Biological Conservation 256 (2021): 109043. http://dx.doi.org/10.1016/j.biocon.2021.109043.
    10.1016/j.biocon.2021.109043
  10. Mário Mota-Ferreira; Ana Filipa Filipe; Maria Filomena Magalhães; Sara Carona; Pedro Beja; Alana Grech. "Spatial modelling of temporal dynamics in stream fish communities under anthropogenic change". Diversity and Distributions (2021): https://doi.org/10.1111/ddi.13189.
    10.1111/ddi.13189
  11. Stefano Larsen; Lise Comte; Ana Filipa Filipe; Marie-Josée Fortin; Claire Jacquet; Remo Ryser; Pablo A. Tedesco; et al. "The geography of metapopulation synchrony in dendritic river networks". Ecology Letters (2021): https://doi.org/10.1111/ele.13699.
    10.1111/ele.13699
  12. Sofia Duarte; Barbara R. Leite; Maria João Feio; Filipe O. Costa; Ana Filipa Filipe. "Integration of DNA-Based Approaches in Aquatic Ecological Assessment Using Benthic Macroinvertebrates". Water 13 3 (2021): 331-331. https://doi.org/10.3390/w13030331.
    10.3390/w13030331
  13. Lise Comte; Juan Carvajal-Quintero; Pablo A. Tedesco; Xingli Giam; Ulrich Brose; Tibor Eros; Ana F. Filipe; et al. "RivFishTIME: A global database of fish time-series to study global change ecology in riverine systems". Global Ecology and Biogeography 30 1 (2021): 38-50. https://doi.org/10.1111/geb.13210.
    10.1111/geb.13210
  14. Hermoso, Virgilio; Clavero, Miguel; Filipe, Ana Filipa. "An accessible optimisation method for barrier removal planning in stream networks". Science of The Total Environment 752 (2021): 141943. http://dx.doi.org/10.1016/j.scitotenv.2020.141943.
    10.1016/j.scitotenv.2020.141943
  15. Hermoso, Virgilio; Vasconcelos, Rita P.; Henriques, Sofia; Filipe, Ana F.; Carvalho, Silvia B.. "Conservation planning across realms: Enhancing connectivity for multi-realm species". Journal of Applied Ecology (2020): http://dx.doi.org/10.1111/1365-2664.13796.
    10.1111/1365-2664.13796
  16. Aina Garcia-Raventós; Filipa M. S. Martins; Amílcar Teixeira; Ronaldo Sousa; Elsa Froufe; Simone Varandas; Manuel Lopes Lima; Pedro Rui Beja; Filipe, Ana Filipa. "Origin and history of Phoxinus (Cyprinidae) introductions in the Douro Basin (Iberian Peninsula): an update inferred from genetic data". Biological Invasions (2020): http://dx.doi.org/10.1007/s10530-020-02279-5.
    10.1007/s10530-020-02279-5
  17. Eros, Tibor; Comte, Lise; Filipe, Ana Filipa; Ruhi, Albert; Tedesco, Pablo A.; Brose, Ulrich; Fortin, Marie-Josée; et al. "Effects of nonnative species on the stability of riverine fish communities". Ecography 43 (2020): 1156-1166. http://dx.doi.org/10.1111/ecog.04985.
    10.1111/ecog.04985
  18. Feio, Maria Joao; Filipe, Ana Filipa; Garcia-Raventos, Aina; Ardura, Alba; Calapez, Ana Raquel; Pujante, Ana Maria; Mortagua, Andreia; et al. "Advances in the use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems". Limnética (2020): https://publons.com/publon/29245640/.
    10.23818/LIMN.39.27
  19. Moreira, Francisco; Allsopp, Nicky; Esler, Karen J.; Wardell-Johnson, Grant; Ancillotto, Leonardo; Arianoutsou, Margarita; Clary, Jeffrey; et al. "Priority questions for biodiversity conservation in the Mediterranean biome: Heterogeneous perspectives across continents and stakeholders". Conservation Science and Practice 1 11 (2019): http://dx.doi.org/10.1111/csp2.118.
    10.1111/csp2.118
  20. Filipa M. S. Martins; Mafalda Galhardo; Ana F. Filipe; Amílcar Teixeira; Paulo Pinheiro; Joana Paupério; Paulo C. Alves; Pedro Beja. "Have the cake and eat it: Optimizing nondestructive DNA metabarcoding of macroinvertebrate samples for freshwater biomonitoring". Molecular Ecology Resources 19 4 (2019): 863-876. https://doi.org/10.1111/1755-0998.13012.
    10.1111/1755-0998.13012
  21. Blackman, Rosetta; Mächler, Elvira; Altermatt, Florian; Arnold, Amanda; Beja, Pedro; Boets, Pieter; Egeter, Bastian; et al. "Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring – the need for calibration experiments". Metabarcoding and Metagenomics 3 (2019): http://dx.doi.org/10.3897/mbmg.3.34735.
    10.3897/mbmg.3.34735
  22. Ana Filipa Filipe; Maria João Feio; Aina Garcia-Raventós; José Pedro Ramião; Giorgio Pace; Filipa MS Martins; Maria Filomena Magalhães. "The European Water Framework Directive facing current challenges: recommendations for a more efficient biological assessment of inland surface waters". Inland Waters (2019): 1-9. https://doi.org/10.1080/20442041.2018.1494973.
    10.1080/20442041.2018.1494973
  23. Anastácio, P.M.; Ribeiro, F.; Capinha, C.; Banha, F.; Gama, M.; Filipe, A.F.; Rebelo, R.; Sousa, R.. "Non-native freshwater fauna in Portugal: A review". Science of the Total Environment 650 (2019): 1923-1934. http://www.scopus.com/inward/record.url?eid=2-s2.0-85054185251&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2018.09.251
  24. Hermoso, V.; Filipe, A.F.; Segurado, P.; Beja, P.. "Freshwater conservation in a fragmented world: Dealing with barriers in a systematic planning framework". Aquatic Conservation: Marine and Freshwater Ecosystems 28 1 (2018): 17-25. http://www.scopus.com/inward/record.url?eid=2-s2.0-85030482485&partnerID=MN8TOARS.
    10.1002/aqc.2826
  25. Pawlowski, J.; Kelly-Quinn, M.; Altermatt, F.; Apothéloz-Perret-Gentil, L.; Beja, P.; Boggero, A.; Borja, A.; et al. "The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems". Science of the Total Environment 637-638 (2018): 1295-1310. http://www.scopus.com/inward/record.url?eid=2-s2.0-85047091292&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2018.05.002
  26. Murria, Cesc; Bonada, Nuria; Vellend, Mark; Zamora-Munoz, Carmen; Alba-Tercedor, Javier; Sainz-Cantero, Carmen Elisa; Garrido, Josefina; et al. "Local environment rather than past climate determines community composition of mountain stream macroinvertebrates across Europe.". Molecular ecology (2017): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:28881498&KeyUID=MEDLINE:28881498.
    10.1111/mec.14346
  27. Filipe, Ana Filipa; Quaglietta, Lorenzo; Ferreira, Mario; Magalhes, Maria Filomena; Beja, Pedro. "Geostatistical distribution modelling of two invasive crayfish across dendritic stream networks". Biological Invasions 19 10 (2017): 2899-2912. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000411148400009&KeyUID=WOS:000411148400009.
    10.1007/s10530-017-1492-3
  28. Clavero, Miguel; Ninyerola, Miquel; Hermoso, Virgilio; Filipe, Ana Filipa; Pla, Magda; Villero, Daniel; Brotons, Lluis; Delibes, Miguel. "Historical citizen science to understand and predict climate-driven trout decline". Proceedings of the Royal Society B: Biological Sciences 284 1846 (2017): https://publons.com/publon/506182/.
    10.1098/RSPB.2016.1979
  29. Winfield, Ian J.; Baigun, Claudio; Balykin, Pavel A.; Becker, Barbara; Chen, Yushun; Filipe, Ana F.; Gerasimov, Yuri V.; et al. "International Perspectives on the Effects of Climate Change on Inland Fisheries". Fisheries 41 7 (2016): 399-405. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000380148000012&KeyUID=WOS:000380148000012.
    10.1080/03632415.2016.1182513
  30. Ferreira, Mario; Filipe, Ana Filipa; Bardos, David C.; Magalhaes, Maria Filomena; Beja, Pedro. "Modeling stream fish distributions using interval-censored detection times". Ecology and Evolution 6 15 (2016): 5530-5541. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000381216300034&KeyUID=WOS:000381216300034.
    10.1002/ece3.2295
  31. Romeiras, Maria Manuel; Catarino, Silvia; Filipe, Ana Filipa; Magalhaes, Maria Filomena; Duarte, Maria Cristina; Beja, Pedro. "Species Conservation Assessments in Oceanic Islands: the Consequences of Precautionary Versus Evidentiary Attitudes". Conservation Letters 9 4 (2016): 275-280. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000381025700005&KeyUID=WOS:000381025700005.
    10.1111/conl.12212
  32. Hermoso, Virgilio; Filipe, Ana Filipa; Segurado, Pedro; Beja, Pedro. "Catchment zoning to unlock freshwater conservation opportunities in the Iberian Peninsula". Diversity and Distributions 22 9 (2016): 960-969. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000381577800004&KeyUID=WOS:000381577800004.
    10.1111/ddi.12454
  33. Hermoso, Virgilio; Filipe, Ana Filipa; Segurado, Pedro; Beja, Pedro. "Filling gaps in a large reserve network to address freshwater conservation needs". Journal of Environmental Management 161 (2015): 358-365. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000361264100040&KeyUID=WOS:000361264100040.
    10.1016/j.jenvman.2015.07.023
  34. Pauperio, Joana; Grosso, Jose Manuel; Martins, Filipa; Filipe, Ana Filipa; Penado, Andreia; Mata, Vanessa; Rebelo, Hugo; Alves, Paulo Celio; Beja, Pedro. "BARCODING.MED: building a high taxonomic resolution database for the Mediterranean basin". Genome 58 5 (2015): 265-265. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000360861200300&KeyUID=WOS:000360861200300.
  35. Hermoso, Virgilio; Filipe, Ana Filipa; Segurado, Pedro; Beja, Pedro. "Effectiveness of a large reserve network in protecting freshwater biodiversity: a test for the Iberian Peninsula". Freshwater Biology 60 4 (2015): 698-710. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000351213000008&KeyUID=WOS:000351213000008.
    10.1111/fwb.12519
  36. Filipe, A.F.; Markovic, D.; Pletterbauer, F.; Tisseuil, C.; De Wever, A.; Schmutz, S.; Bonada, N.; Freyhof, J.. "Forecasting fish distribution along stream networks: Brown trout (Salmo trutta) in Europe". Diversity and Distributions 19 8 (2013): 1059-1071. http://www.scopus.com/inward/record.url?eid=2-s2.0-84880131375&partnerID=MN8TOARS.
    10.1111/ddi.12086
  37. Filipe, Ana Filipa; Lawrence, Justin E.; Bonada, Nuria. "Vulnerability of stream biota to climate change in mediterranean climate regions: a synthesis of ecological responses and conservation challenges". Hydrobiologia (2013): https://publons.com/publon/1100505/.
    10.1007/S10750-012-1244-4
  38. Segurado, P.; Kunin, W. E.; Filipe, A. F.; Araujo, M. B.. "Patterns of coexistence of two species of freshwater turtles are affected by spatial scale". Basic and Applied Ecology (2012): https://publons.com/publon/1100506/.
    10.1016/J.BAAE.2012.03.008
  39. Ana Filipa Filipe; M. Filomena Magalhães; Maria João Collares-Pereira; Filipe, A.F.; Filomena Magalhães, M.; Collares-Pereira, M.J.. "Native and introduced fish species richness in Mediterranean streams: the role of multiple landscape influences". Diversity and Distributions 16 5 (2010): 773-785. https://publons.com/publon/1100507/.
    10.1111/J.1472-4642.2010.00678.X
  40. Filipe, A.F.; Araújo, M.B.; Doadrio, I.; Angermeier, P.L.; Collares-Pereira, M.J.; Filipe, Ana F.; Araujo, Miguel B.; et al. "Biogeography of Iberian freshwater fishes revisited: The roles of historical versus contemporary constraints". Journal of Biogeography 36 11 (2009): 2096-2110. http://www.scopus.com/inward/record.url?eid=2-s2.0-70350125179&partnerID=MN8TOARS.
    10.1111/j.1365-2699.2009.02154.x
  41. Ribeiro, F.; Gante, H.F.; Sousa, G.; Filipe, Ana Filipa; Alves, M.J.; Magalhães, M.F.. "New records, distribution and dispersal pathways of Sander lucioperca in Iberian freshwaters". Cybium 33 3 (2009): 255-256. https://publons.com/publon/1100509/.
  42. Filipe, A.F.; Marques, T.A.; Seabra, S.; Tiago, P.; Ribeiro, F.; Moreira Da Costa, L.; Cowx, I.G.; et al. "Selection of Priority Areas for Fish Conservation in Guadiana River Basin, Iberian Peninsula". Conservation Biology 18 1 (2004): 189-200. http://www.scopus.com/inward/record.url?eid=2-s2.0-1242288074&partnerID=MN8TOARS.
    10.1111/j.1523-1739.2004.00620.x
  43. Ribeiro, F.; Cowx, I.G.; Tiago, P.; Filipe, A.F.; Moreira Da Costa, L.; Collares-Pereira, M.J.. "Growth and reproductive traits of diploid and triploid forms of the Squalius alburnoides cyprinid complex in a tributary of the Guadiana River, Portugal". Archiv fur Hydrobiologie 156 4 (2003): 471-484. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037697476&partnerID=MN8TOARS.
    10.1127/0003-9136/2003/0156-0471
  44. Ana Filipa Filipe; I. G. Cowx; M. J. Collares-Pereira; Filipe, A.F.; Cowx, I.G.; Collares-Pereira, M.J.. "Spatial modelling of freshwater fish in semi-arid river systems: A tool for conservation". River Research and Applications 18 2 (2002): 123-136. https://publons.com/publon/1100511/.
    10.1002/RRA.638
Report
  1. Filipe, A.F.; Garcia-Raventós, Aina; Martins, Filipa; NOGUEIRA, JOANA GARRIDO; Teixeira, Amílcar; Miranda, Fernando; Teixeira, Fernando; et al. 2022. The conservation status of freshwater species and habitats in Key Biodiversity Areas (KBAs) at the Douro river basin. IUCN Centre for Mediterranean Cooperation.
  2. Faculdade de Ciências. 2018. Deliverable 4.3 (D4.3): Protocol for field collection and preservation of eDNA samples, EnvMetaGen project (Grant Agreement No 668981). https://hdl.handle.net/10216/119637.
    10.5281/zenodo.2598129
Thesis / Dissertation
  1. Filipe, Ana Filipa. "Spatial patterns of species composition and richness in Iberian freshwater fish. A macroecological approach". PhD, 2010.
  2. Filipe, Ana Filipa. "Spatial modelling of the distribution of freshwater species, in two seasons of the hydrological regime of the lower part of the Guadiana River Basin (Portugal)". Degree, Fundação da Faculdade de Ciências da Universidade de Lisboa, 1998.

Artistic / Performance

Video recording
  1. Filipe, Ana Filipa; Paul Jepson; Rob St.John (Producer); Adam Proctor (Director). 2012. Water lives. Biofresh EU funded project.
Visual artwork
  1. Filipe, Ana Filipa. "The native fish of Guadiana Basin". Poster with scientific illustrations of freshwater fish.
  2. Filipe, Ana Filipa. Illustrations in the “Landscape rehabilitation in the southern of Portugal” by The Green Belt Project WWF.
  3. Filipe, Ana Filipa. "The New River Fish". Poster with scientific illustrations of freshwater fish.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2021/08/01 Unclogging EU rivers: prioritisation of barrier removal in stream networks SEFS 12 Symposium for European Freshwater Sciences
SEFS (Dublin, Ireland)
2021/07/29 The geography of metapopulation synchrony in dendritic river networks SEFS 12 Symposium for European Freshwater Sciences
SEFS (Dublin, Ireland)
2021/07/26 Towards no-net-loss biodiversity in EU rivers: Planning offsets due to barriers implementation SEFS 12 Symposium for European Freshwater Sciences
SEFS (Dublin, Ireland)
2018/12/18 Early steps in the molecular biomonitoring of freshwaters in Portugal. Mainstreaming molecular approaches in national environmental monitoring programs of aquatic ecosystems and biodiversity: opportunities and challenges in Portugal
CIBIO-InBIO (Vairão, Portugal)
2018/10/24 Peixes de água (agri)doce: como sobreviver a espécies invasoras, barragens, alterações climáticas e fragmentação do habitat? Café com Ciencia,
Fundação Serralves (Porto, Portugal)
2017/12/14 Potencialities of environmental DNA as a tool to restore streams V Jornadas de Restauro Fluvial
LNEC (LAboratóroio de Engenharia Civil) (Lisboa, Portugal)
2017/07/28 Design of optimum monitoring networks for the evaluation of ecological status in Iberian rivers. Conference on Ecological Quality and Conservation Status of Inland Waters. Conference on Ecological Quality and Conservation Status of Inland Waters
University of Navarra (Navarra, Spain)
2016/09/12 FRESHING PROJECT: The new era for ecological quality and biodiversity monitoring using metagenomic and eDNA approaches. eDNA monitoring of invasive non-native species workshop ALIEN Challenge COST action meeting
COST Action (Vianden, Luxembourg)
2013 Vulnerability of Stream Biota to Climate Change in Mediterranean Climate Regions. Workshop Conservation of Fish Fauna and Climate Change in Mediterranean-type Streams
University of Évora (Évora, Portugal)
2013 Using time to first detection to improve species distributions models Workshop opening doors: The ecology of fresh and brackish waters
Estacion Biologica Doñana (Doñana, Spain)
2011 Forecasting Biodiversity Change - modelling freshwater fish at the catchment scale BIOFRESH 2nd Annual Meeting
(Barcelona, Spain)
2011 BioFresh project: Biodiversity of freshwater ecosystems: status, trends, pressures and conservation
University of Barcelona (Barcelona, Spain)
2006 GBIF network potentialities for the user: ecological modelling of species occurrence data. Workshop of the GBIF network data: the DiGIR protocol. Nacional Museum of Natural History. Lisboa, Portugal. Global Biodiversity Information Facility Workshop
Nacional Museum of Natural History (Lsboa, Portugal)
2005 Connecting science to water management policies for riverine fish conservation: present and future challenges Seminary of fluvial territories and Sustainable Management of water
School of Technology and Polytechnic Institute of Tomar (Tomar, Portugal)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2019/11/01 - Current Integrated conservation of freshwater mussels and their fish hosts facing climate change: a modelling approach
Co-supervisor of Janine Pereira da Silva
 Ciências do Ambiente
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2021 - 2021 Integrated conservation of freshwater mussels and their fish hosts facing climate change: a modelling approach
Co-supervisor
 Biologia Molecular e Ambiental (PhD)
Universidade do Minho, Portugal
2017/11/16 - 2020/02/21 Combining phylogeny, systematics and ecology to advance the conservation of freshwater mussels (Bivalvia: Unionida)
Co-supervisor
 Biodiversidade, Genética e Evolução (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2015/01 - 2016/01/14 Perspectives on Current Knowledge and Conservation of Freshwater Mussels (Bivalvia: Unionoida)
Co-supervisor
 Biodiversidade, Genética e Evolução
Universidade do Porto Faculdade de Ciências, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2020 - 2020 Special Session: DNA barcoding, (e)DNA metabarcoding and metagenomics to address ecological and evolutionary questions in aquatic ecosystems. Conference of the Iberian Association of Limnology AIL XX. 22-26 June. Murcia, Spain (2020 - 2020)
Symposium (Co-organisor)
 Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2018/12/18 - 2018/12/21 Mainstreaming molecular approaches in national environmental monitoring programs of aquatic ecosystems and biodiversity: opportunities and challenges in Portugal CIBIO-InBIO (Vairão, Portugal) (2018 - 2018)
Meeting (Co-organisor)
 Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2018/08/01 - 2018/09/01 Short Term Scientific Mission (STSM) of Aina Raventós. DNA barcode reference libraries for aquatic biota in Europe: Gap-analysis and recommendationsfor future work. DNAqua-Net EU COST (European Cooperation in Science and Technology) (Action: CA15219. Reference number: 41226). Host institution: Evolutionary Genetics Laboratory (eGL), Universität Ankara, Ankara, Turkey (2018/08/01 - 2018/09/01)
Other (Co-organisor)
 Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2018 - 2018 Special Session: The use of molecular tools in ecological and biodiversity assessment of aquatic ecosystems. Conference of the Iberian Association of Limnology AIL XIX . 24–29 June. Coimbra, Portugal (2018 - 2018)
Symposium (Co-organisor)
 Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2016 - 2016 FRESHING: Next-generation biomonitoring: freshwater bioassessment and species conservation improved with metagenomics. First meeting project. (2016 - 2016)
Meeting (President of the Organising Committee)
 Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal

Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2011 - 2011 BIOFRESH: Biodiversity of Freshwater Ecosystems: Status, Trends, Pressures, and Conservation Priorities. Second Meeting. (2011 - 2011)
Conference (Member of the Organising Committee)
 Universitat Autònoma de Barcelona Departament de Biologia Animal de Biologia Vegetal i d'Ecologia, Spain
2011 - 2011 Special session: Assessing the impacts of global change and anthropogenic pressures on freshwater ecosystems, a role for long term-ecological research. Congress SEFS, Symposium for European Freshwater Sciences 7. Girona, Spain (2011 - 2011)
Symposium (Co-organisor)
 Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2010 - 2010 Trend Analyses Workshop (2003 - 2003)
Workshop (Co-organisor)
 Universitat de Barcelona Facultat de Biologia, Spain
2003 - 2003 Rede Natura Meeting. Lisboa (Portugal) (2003 - 2003)
Conference (Co-organisor)
 Instituto da Conservação da Natureza e das Florestas, Portugal
2000 - 2000 International Symposium of freshwater fish conservation: options for the future. Faro (Portugal) (2000 - 2000)
Congress (Co-organisor)
 Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2018/12/14 DNA metabarcoding approach as a complementary technique for assessment of Portuguese rivers using diatoms
(Thesis) Main arguer
 Andreia Filipa Henriques Mortágua (Master)
Universidade de Aveiro, Portugal
2016/01/21 Diversity patterns in freshwater ecosystems: new insights using water beetles at different spatial scales
(Thesis) Arguer
 Félix Picazo Mota (PhD)
Universidad de Murcia, Spain
2015/07/24 Speciation, extinction, and dispersal processes related to fragmentation of riverine networks: a multiscale approach using freshwater fishes
(Thesis) Arguer
 Murilo Sversut Dias (PhD)
Muséum National d'Histoire Naturelle, France

Association member

Society Organization name Role
2012 - Current Iberian Society of Ichthyology (SIBIC)
2011 - 2011 Associação Ibérica de Limnologia (AIL)

Conference scientific committee

Conference name Conference host
2020 - 2020 Conference of the Iberian Association of Limnology AIL XX Murcia, Spain
2014 - 2014 V Iberian Congress of Ichthyology of SIBIC - Know to Preserve Lisbon, Portugal
2011 - 2011 Symposium for European Freshwater Sciences SEFS7 Girona, Spain
2008 - 2008 Conference of the Iberian Association of Limnology AIL XIX Coimbra, Portugal

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2019 - 2019 An introduction to Geographic Information Systems (GIS). Kitwe, Zambia Copperbelt University (Postgraduate Certificate) The Copperbelt University, Zambia
2017 - 2019 Conservation planning of freshwater biodiversity (invited lecture) MSc in Ecology and Environmental Management (Mestrado integrado) Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2018 Using environmental DNA for monitoring and restoring rivers (invited lecture) FLUVIO - River Restoration and Management Doctoral program. FLUVIO Consortium (Doctor of Philosophy) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2010 - 2010 Patterns of freshwater fish across Iberian landscapes: examining factors, understanding processes (invited lecture) (Graduado) Universitat de Barcelona Departament d'Ecologia, Spain

Journal scientific committee

Journal title (ISSN) Publisher
2019 - Current Frontiers in Ecology and Evolution (2296-701X) Frontiers Media SA
2017/09/01 - Current Metabarcoding and Metagenomics (2534-9708) Pensoft Publishers
2017 - Current Diversity (1424-2818) MDPI AG
2016 - Current Nature Climate Change (1758-6798) Springer Science and Business Media LLC
2015 - Current Ecography (1600-0587) Wiley (Blackwell Publishing)
2015 - Current Aquatic Conservation Marine and Freshwater Ecosystems (1099-0755) Wiley (John Wiley & Sons)
2015 - Current The Science of The Total Environment (0048-9697) Elsevier
2008 - Current Biological Conservation (0006-3207) Elsevier
2008 - Current Global Ecology and Biogeography (1466-822X) Wiley (Blackwell Publishing)
2007 - Current Diversity and Distributions (1472-4642) Wiley (Blackwell Publishing)
2007 - Current Global Change Biology (1365-2486) Wiley (Blackwell Publishing)
2004 - Current Journal of Biogeography (1365-2699) Wiley (Blackwell Publishing)

Other jury / evaluation

Activity description Institution / Organization
2022 - Current Review of project grant proposal for the National Science Center, Poland
2016 - Current Evaluator of COST EU projects Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Distinctions

Award

2021 Best student presentation in European Congress of Malacological Societies 2021
Malacological Societies, Czech Republic
2010 Best 2010 Young Scientist
Fluviário, Portugal
2005 Synthesis Grant for visting MNHN Museo Nacional de Ciencias Naturales. Madrid, Spain
European Commission, Belgium
2002 LIFE-Saramugo (LIFE97NAT/P/4075) as Best European LIFE-Nature project
Life-Nature, Belgium
1997 Best scientific poster for young researchers
Congress ECSA, Portugal

Other distinction

2008 Honor Prize at Biodiversity BES Prize. “Business and Biodiversity” European Initiative
Banco Espírito Santo e Comercial de Lisboa, Portugal