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The main areas of interest and research are: • syntrophic communities of anaerobic bacteria and archaea • sulfate-reducing bacteria and their interaction with methanogenic communities • anaerobic bacteria that respire with organic and inorganic chlorine compounds Scientific synopsis Prof. Alfons Stams started his international scientific career as PhD student at the University of Groningen, the Netherlands, where he studied the ecophysiology of sulfate-reducing bacteria. He discovered that amino acids in sediments are not degraded by sulfate-reducing bacteria alone, but by obligate syntrophic communities of amino acid-degrading bacteria and sulfate-reducing bacteria. This was a crucial discovery for our understanding of how the anaerobic food chain functions. He realized that syntrophy is a very important and relevant process in anaerobic environments, and he decided to continue his scientific career in that area of research. This became possible when Prof. Alexander Zehnder offered him a postdoc position at Wageningen University, where he started to study syntrophic conversions in methanogenic environments. Over the years Alfons Stams discovered a large number of new syntrophic interactions, even during studies where syntrophy was not expected to play a role. He performs forefront research on one of the most important phenomena in the microbial world. Alfons Stams has 30 years research experience with anaerobic microbial communities, especially those that are key players in environmental biotechnological processes. Besides studying topics that are scientifically challenging, he finds it very important that his research is relevant for application. While keeping a focus on anaerobic conversions, he developed as scientist. He went through all disciplines that are essential to understand the microbiology of anaerobic communities; physiology, molecular ecology and biochemistry, and since some years including genomics approaches. His main areas of interest and research are: • syntrophic communities of anaerobic bacteria and archaea • sulfate-reducing bacteria and their interaction with methanogenic communities • anaerobic bacteria that respire with organic and inorganic chlorine compounds The main achievements of the past decade that impacted or will impact the scientific community concern: •Into-depth insight of the physiology and bioenergetics of obligate syntrophic methanogenic communities that degrade fatty acids. A large set of functionally different hydrogenases and hydrogenases were found to be present in bacteria that grow in obligate syntrophy with methanogens. The large set of terminal reductases is essential to provide syntrophic communities flexibility to thermodynamic constraints of the conversion that they catalyze, •Discovery of novel syntrophic conversions such as syntrophic growth on amino acids and one-carbon substrates (methanol, formate, CO). From the energetic and biochemical viewpoint syntrophic growth with formate was most remarkable, as it concerns a simple hydrolysis of formate to hydrogen and carbon dioxide, •Isolation and description of 10 novel genera and 19 novel species of anaerobic microorganisms. Most of the novel species turned out to catalyze key functions in the process that was studied, •The first successful enrichment of anaerobic methane-oxidizing communities of archaea and bacteria. This is an important achievement as anaerobic methane oxidation coupled to sulfate reduction is known for more than 30 years, but successful enrichment was never described, •The description of anaerobic bacteria that produce oxygen from chlorate and employ aerobic pathways in the absence oxygen, as demonstrated for degradation of benzene and decane, •The discovery of a novel perchlorate-reducing pathway in hyperthermophilic archaea, involving the sulfur cycle. As perchlorate reduction and sulfate reduction occur at contrasting redox potentials, it was very remarkable.
Identification

Personal identification

Full name
Alfons Stams

Citation names

  • Stams, Alfons

Author identifiers

Ciência ID
AA18-A93E-DF30

Knowledge fields

  • Engineering and Technology - Environmental Biotechnology

Languages

Language Speaking Reading Writing Listening Peer-review
Dutch Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
German Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Beginner (A1) Intermediate (B1) Beginner (A1) Beginner (A1)
Spanish; Castilian Beginner (A1) Intermediate (B1) Intermediate (B1) Beginner (A1)
Portuguese Beginner (A1) Intermediate (B1) Beginner (A1) Beginner (A1)
Education
Degree Classification
1985/09/06
Concluded
n.a. (Doktor (PhD))
Rijksuniversiteit Groningen, Netherlands
"Ecophysiological aspects of the electron donor mtabolism of sulfate-reducing bacteria" (THESIS/DISSERTATION)
PhD degree
Affiliation

Others

Category
Host institution
Employer
2010/12/01 - Current Invited scientist partial time Universidade do Minho Centro de Engenharia Biológica, Portugal
1985/09/01 - 2020/01/14 Personnel chair at the Laboratory of Microbiology of Wageningen University Wageningen Universiteit Laboratorium voor Microbiologie, Netherlands
Projects

Contract

Designation Funders
2019/12/16 - Current Using predefined co-cultures to incorporate microbial electrosynthesis into the syngas fermentation platform for CO2 fixation
Supervisor
Ongoing
2019/10/10 - Current Fermenting syngas to polyhydroxyalkanoates
Supervisor
2019/10/01 - Current Isolation of novel biocatalysts for syngas conversion
Supervisor
Ongoing
2019/08/26 - Current Survival strategies and growth of acidophiles
Supervisor
Ongoing
2019/05/01 - Current Methanol metabolism of anaerobic bacteria
Supervisor
2018/08/01 - Current Anaerobic microbiology of Black Sea
Supervisor
Ongoing
2018/04/16 - Current Synthetic microbial consortia for syngas fermentation
Supervisor
2017/08/01 - Current Syntrophic growth of anaerobic microbial consortia on one-carbon compounds
Supervisor
Ongoing
2017/07/01 - Current Acidothermophilic Sulphur Bioreduction
Supervisor
Ongoing
2017 - Current Microbial product formation from one-carbon compounds.
-
Principal investigator
2017 - Current Sulfur reduction for the recovery of metals from mining wastewater
-
Principal investigator
2015/11/02 - Current Fermentation and cooperation by marine anaerobes
Supervisor
Ongoing
2015/02/01 - Current Syntrophic interactions during fatty-acid anaerobic conversion
Supervisor
Ongoing
2014/06/01 - Current Sulfur metabolism in the human gut microbiota
Supervisor
2014/01/15 - Current The effect of the nutrient matrix on biofilm formation in membrane filtration units
Supervisor
2013/01/02 - Current Improved evaluation of the biodegradability of organic substances
Supervisor
2013 - Current Gravitation consortium, the Soehngen Institute for Anaerobic Microbiology
-
Researcher
Ongoing
2012/09/03 - Current Physiology of electrochemically active bacteria in microbial fuel cells (MFCs) and microbial electrolysis cells (MECs)
Supervisor
2011 - Current Sulfate reduction at high pH and high salt
-
Researcher
Wetsus, Netherlands
Concluded
2009 - Current Quantification of electron fluxes in methanogenesis
-
Researcher
Technology Foundation (STW), Netherlands
Concluded
2008 - Current Microbial perchlorate reduction in subsurface environments
-
Researcher
Shell Global Solutions International BV, Netherlands
2008 - Current Application of chlorate for soil bioremediation
-
Researcher
Technology Foundation (STW)
Concluded
2007 - Current Sulfate reduction with methane as electron donor
-
Researcher
Technology Foundation (STW)
Concluded
2005 - Current Exocellular electron transfer in anaerobic microbial communities
Researcher
Concluded
2016/07/01 - 2019/12/31 Enhanced microbial oil bioremediation by ferric minerals
PTDC/AAG-TEC/3500/2014
Researcher
Universidade do Minho Centro de Engenharia Biológica, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2014/10/01 - 2019/02/08 Microbial networks as biocatalysts for anaerobic syngas conversion
Supervisor
Concluded
2014/03/17 - 2019/01/16 Novel Anaerobes
Supervisor
Concluded
2009 - 2019 Physiological properties of biofouling bacteria
Supervisor
2007 - 2019 Microbiology and mechanisms of exocellular electron transfer in microbial fuel cells
Supervisor
2015/01/01 - 2018/12/31 PEst UID/BIO/04469/2013 - Strategic funding 2015-2018
Researcher
Concluded
2012/03/01 - 2018/09/07 The Rumen as Bioreactor
Supervisor
2013/04/01 - 2018/03/31 Novel Anaerobes for a Biobased Economy
Principal investigator
Wageningen Universiteit Laboratorium voor Microbiologie, Netherlands

Universidade do Minho Centro de Engenharia Biológica, Portugal
European Research Council
Concluded
2011 - 2018 Quantifying Electron Fluxes in Methanogenic Microbial Communities
Supervisor
2012/08/16 - 2017/05/08 Anaerobic processes for energy conservation and biotransformation of pollutants
Supervisor
2012/02/01 - 2017/04/21 Bleed stream reduction by biological conversion of (thio)sulfate to sulfide
Supervisor
2013/04/01 - 2017/03/21 Thermophilic, acidophilic sulfur reduction for improved recovery of precious metals from refractory ores
Supervisor
2010 - 2017 Microbial interactions in marine anoxic sediments: competition or teamwork?
Supervisor
2011/09/15 - 2016/12/14 Enhanced Enzymatic Anaerobic Fermentation of Organic Residues (EnzyFOR)
Supervisor
2013/06/01 - 2015/09/30 Microbial processes under engineered conditions for in situ bioremediation of oil-contaminated sites
PTDC/AAG-TEC/3428/2012
Researcher
Instituto de Biotecnologia e Bioengenharia, Portugal

Universidade do Minho, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2013/05/01 - 2015/09/30 Syngas bio-upgrading to fuels and chemicals
PTDC/AAG-TEC/4276/2012
Researcher
Instituto de Biotecnologia e Bioengenharia, Portugal

Universidade do Minho, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2014/03/01 - 2015/08/31 Carbon Material @ Metalic Magnetic Nanoparticles composites as electron shuttles for the biodegradation of dyes
EXPL/AAG-TEC/0898/2013
Researcher
Instituto de Biotecnologia e Bioengenharia, Portugal

Universidade do Minho, Portugal

Universidade do Porto Faculdade de Engenharia, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010 - 2015 Anaerobic Methane Oxidation for Biological Sulphate and Sulphur Reduction
Supervisor
2009 - 2015 Syntrophic growth of anaerobic communities using C-1 substrates
Supervisor
2009 - 2015 The influence of biogeochemical factors on the process and products of bio-precipitation: implications for the fate of heavy metals
Supervisor
2009 - 2014 Applicability of different electron acceptors for microbial enhanced oil recovery purposes
Supervisor
2008 - 2014 Anaerobic microbial degradation of surfactants
Supervisor
2008 - 2013 Chlorate reduction as a novel concept for bioremediation of heavily polluted anaerobic soils
Supervisor
2007 - 2012 Tracing the biology behind novel paleoenvironmental proxies: Identification and ecophysiology of anaerobic soil bacteria producing branched GDGT membrane lipids
Supervisor
2007 - 2012 Microbial communities in Biocatalyzed Electrolysis Cells
Supervisor
2006 - 2010 Hydrogen formation by thermophilic anaerobic bacteria
Supervisor
2005 - 2010 Genome analysis and regulation of electron transfer in consortia of Syntrophobacter fumaroxidans and Methanospirillum hungatei
Supervisor
2004 - 2010 Biofilm development on new and cleaned surface of membranes
Supervisor
2005 - 2008 Bacterial anaerobic methane oxidation in high temperature environment
Principal investigator
Outputs

Publications

Book chapter
  1. Stams, Alfons Johannes Maria; Teusink, Bas; Sousa, Diana Zita Machado. "Ecophysiology of Acetoclastic Methanogens". In Handbook of Hydrocarbon and Lipid Microbiology, Vol. 2 - Biogenesis of Hydrocarbons. Springer International Publishing, 2019.
    10.1007/978-3-319-53114-4_21-1
  2. Florentino, Anna P.; Weijma, Jan; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Ecophysiology and application of acidophilic sulfur-reducing microorganisms". In Biotechnology of Extremophiles: Advances and Challenges. Springer, 2016.
    10.1007/978-3-319-13521-2_5
  3. Cavaleiro, Ana Júlia; Picavet, Merijn Amilcare; Sousa, Diana Zita Machado; Stams, Alfons Johannes Maria; Pereira, M. A.; Alves, M. M.. "Anaerobic digestion of lipid-rich waste". In Hydrocarbon and Lipid Microbiology Protocols - Pollution Mitigation and Waste Treatment Applications, 221-236. Springer International Publishing, 2015.
    10.1007/8623_2015_136
  4. Costa, J. C.; Sousa, D. Z.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.. "Biomethanation potential of biological and other wastes". In Biofuel Technologies. Springer Berlin Heidelberg, 2013.
    10.1007/978-3-642-34519-7_15
  5. Mehboob, Farrakh; Langenhoff, Alette A. M.; Schraa, Gosse; Stams, Alfons J. M.. "Anaerobic Degradation of Lindane and Other HCH Isomers". In Management of Microbial Resources in the Environment, 495-521. Springer Netherlands, 2013.
    10.1007/978-94-007-5931-2_20
  6. Stams, Alfons Johannes Maria; Worm, Petra; Sousa, D. Z.; Alves, M. M.; Plugge, Caroline M.. "Syntrophic degradation of fatty acids by methanogenic communities". In Microbial Technologies in Advanced Biofuels Production. Springer US, 2012.
    10.1007/978-1-4614-1208-3_8
  7. Stams, Alfons. "Environmental biotechnology and microbiology of (per)chlorate reducing bacteria". In Perchlorates: Production, uses and health effects, 211-235. 2011.
  8. Stams, Alfons. "Afvalwaterzuivering: Bacteriën maken vuil water weer schoon". In Microcanon. 2011.
  9. Angelidaki, Irini; Karakashev, Dimitar; Batstone, Damien J.; Plugge, Caroline M.; Stams, Alfons J.M.. "Biomethanation and Its Potential". In Methods in Methane Metabolism, Part A, 327-351. Elsevier, 2011.
    10.1016/b978-0-12-385112-3.00016-0
  10. Sousa, D. Z.; Balk, M.; Alves, M. M.; Schink, B.; McInerney. M. J.; Smidt, Hauke; Plugge, Caroline M.; Stams, Alfons Johannes Maria. "Degradation of long-chain fatty acids by sulfate-reducing and methanogenic communities". In Handbook of Hydrocarbon and Lipid Microbiology. Springer, 2010.
    Published
  11. Stams, Alfons. "Microbial Energy Production from Biomass". In Bioelectrochemical Systems: From Extracellular electron transfer to biotechnological application, 17-38. 2010.
  12. Stams, Alfons. "Microbiology of methanogenesis". In Methane and climate change. 2010.
  13. Worm, Petra; Müller, Nicolai; Plugge, Caroline M.; Stams, Alfons J. M.; Schink, Bernhard. "Syntrophy in Methanogenic Degradation". In (Endo)symbiotic Methanogenic Archaea, 143-173. Springer Berlin Heidelberg, 2010.
    10.1007/978-3-642-13615-3_9
  14. Stams, Alfons. "Microbial degradation of aliphatic and aromatic hydrocarbons with (per)chlorate as electron acceptor". In Handbook of hydrocarbon and lipid microbiology. 2010.
  15. Stams, A. J. M.. "Natural Biotechnology: Exploiting Microbial Diversity". In Handbook of Hydrocarbon and Lipid Microbiology, 3361-3365. Springer Berlin Heidelberg, 2010.
    10.1007/978-3-540-77587-4_258
  16. Plugge, Caroline M.; van Lier, Jules B.; Stams, Alfons J. M.. "Syntrophic Communities in Methane Formation from High Strength Wastewaters". In Microbes at Work, 59-77. Springer Berlin Heidelberg, 2009.
    10.1007/978-3-642-04043-6_3
  17. Stams, Alfons. "The genus Soehngenii". In Bergey's Manual of Systematic Bacteriology, Volume 3: The Firmicutes. 2nd ed.. 2009.
  18. Kengen, Serv W.M.; Goorissen, Heleen P.; Verhaart, Marcel; Stams, Alfons J.M.; van Niel, Ed W.J.; Claassen, Pieternel A.M.. "Biological Hydrogen Production by Anaerobic Microorganisms". In Biofuels, 197-221. John Wiley & Sons, Ltd, 2008.
    10.1002/9780470754108.ch11
  19. Stams, Alfons. "Microbiology and application of biological sulfate reduction". In Microbes and the environment: perspective and challenges. 2008.
  20. Stams, Alfons. "Syntrophic long-chain fatty acids degradation in anaerobic bioreactors". In Bi-annual Report 2006-2007, 27-32. 2008.
Conference abstract
  1. van Vliet, Daan M.; von Meijenfeldt, F. A. Bastiaan; Versteeg, Sebastiaan; den Breems, Robert; Dutilh, Bas; Villanueva, Laura; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Novel sulfate- and sulfur-reducing bacteria from the Black Sea: metagenomics, enrichment and isolation". 2019.
  2. Fischer, Peter; Stams, Alfons Johannes Maria; Villanueva, Laura; Sousa, Diana Zita Machado. "Enrichment and characterization of microorganisms capable of degrading various C1 compounds in the Black Sea". 2019.
  3. Alves, M. M.; Braga, Cátia Sofia Neves; Martins, Gilberto; Salvador, Andreia Filipa Ferreira; Pereira, M. F. R.; Pereira, Luciana; Soares, O. S. G. P.; et al. "Conductive materials affect methanogenic activity of pure cultures of methanogens and syntrophic cocultures". 2019.
  4. Moreira, João Paulo Carvalho; Diender, Martijn; Arantes, Ana Luísa; Stams, Alfons Johannes Maria; Alves, M. M.; Alves, Joana Isabel Ferreira; Sousa, Diana Zita Machado. "Production of propionate from carbon monoxide by a synthetic co-culture". 2019.
  5. Arantes, Ana Luísa; Moreira, João Paulo Carvalho; Diender, Martijn; Stams, Alfons Johannes Maria; Alves, M. M.; Alves, Joana Isabel Ferreira; Sousa, Diana Zita Machado. "Acetobacterium sp. strain JM, a biotechnological platform organism for syngas conversion". 2019.
  6. Ayudthaya, S. P. N.; Van De Weijer, Antonius H. P.; van Gelder, Antonie H.; Stams, Alfons Johannes Maria; De Vos, Willem M.; Plugge, Caroline M.. "Organic acid production from starchy waste by rumen derived microbial communities". 2017.
  7. Duarte, Maria Salomé; Silva, Sérgio A.; Cavaleiro, Ana Júlia; Stams, Alfons Johannes Maria; Pereira, M. A.; Alves, M. M.. "Untangling the role of facultative bacteria in LCFA conversion to methane". 2017.
  8. Cavaleiro, Ana Júlia; Paulo, Ana M. S.; Salvador, Andreia F.; Alves, J. I.; Castro, Rita; Langenhoff, A. A. M.; Stams, Alfons Johannes Maria; Pereira, M. A.; Alves, M. M.. "Facts and challenges on hydrocarbons bioremediation". 2017.
  9. Martins, Gilberto; Salvador, Andreia Filipa Ferreira; Melle-Franco, Manuel; Serpa, Ricardo; Stams, Alfons Johannes Maria; Cavaleiro, Ana Júlia Viana; Pereira, M. A.; Alves, M. M.. "Effect of carbon nanotubes on methane production in pure cultures of methanogens and in a syntrophic co-culture". 2017.
  10. Pereira, Ana Luísa; Alves, J. I.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Microbial diversity of anaerobic syngas-converting enrichments from a multi-orifice baffled bioreactor (MOBB)". 2017.
  11. Van Vliet, D. M.; Stams, Alfons Johannes Maria; Villanueva, L.; Sánchez-Andrea, Irene. "Enrichment and isolation of novel polysaccharidedegrading anaerobes from abyssal black sea sediment". 2017.
  12. Strepis, Nikolaos; Koehorst, Jasper; Naranjo, Henry Benavides; Schaap, Peter J.; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Trichococcus species as catalysts for biotechnological production of 1,3-propanediol". 2017.
  13. Mollaei, Monir; Sleutels, Tom H. J. A.; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Syntrophic cocultures of Geobacter sulfurreducens and Syntrophobacter fumaroxidans growing on propionate and Fe (III) or a solid electrode as electron acceptors". 2017.
  14. Timmers, Peer H. A.; Vavourakis, C.; Muyzer, G.; Sorokin, D.; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Syntrophic acetate oxidation at haloalkaline conditions". 2017.
  15. Diender, Martijn; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Microbial systems for conversion of syngas to biobased products". 2017.
  16. Feng, Yuan; Stams, Alfons Johannes Maria; De Vos, Willem M.; Sánchez-Andrea, Irene. "Enrichment of sulfidogenic bacteria from the human intestinal tract". 2017.
  17. Paulo, Ana Maria Silva; Salvador, Andreia Filipa Ferreira; Alves, Joana Isabel Ferreira; Castro, Rita; Alette Anna Maria Langenhoff; Stams, Alfons Johannes Maria; Alves, M. M.; Cavaleiro, Ana Júlia. "Addition of co-substrates stimulates hexadecene conversion to methane by an enriched microbial consortium". 2017.
  18. Salvador, Andreia F.; Martins, Gilberto; Melle-Franco, Manuel; Serpa, Ricardo; Stams, Alfons Johannes Maria; Cavaleiro, Ana Júlia; Pereira, M. A.; et al. "Acceleration of methane production by carbon nanotubes". 2017.
  19. Cavaleiro, Ana Júlia; Ribeiro, J.; Guedes, Ana P.; Pereira, Ana Luísa Arantes Carvalho; Pereira, M. A.; Sousa, Diana Zita Machado; Alves, M. M.; Stams, Alfons Johannes Maria. "Exploring syntrophic relationships in the anaerobic biodegradation of lipids and long chain fatty acids". 2017.
  20. Pereira, Luciana; Salvador, Andreia F.; Martins, Gilberto; Cavaleiro, Ana Júlia; Pereira, M. A.; Stams, Alfons Johannes Maria; Pereira, Manuel Fernando; Alves, M. M.. "Acceleration of anaerobic reactions by conductive carbon nanomaterials". 2017.
  21. Duarte, Maria Salomé; Silva, Sérgio A.; Cavaleiro, Ana Júlia Viana; Sousa, Diana Zita Machado; Ribeiro, Maria Alcina Carvalho Ferreira; Stams, Alfons Johannes Maria; Alves, M. M.. "What is the role of Pseudomonas sp. in the anaerobic digestion of long-chain fatty acids?". 2016.
  22. Cavaleiro, Ana Júlia; Salvador, Andreia Filipa Ferreira; Alves, Joana Isabel Ferreira; Langenhoff, Alette; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Unraveling who is who in methanogenic oil degradation". 2015.
  23. Pereira, Ana Luísa; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.. "Enrichment of carbon monoxide utilising microorganisms from methanogenic bioreactor sludge". 2015.
  24. Guedes, Ana P.; Cavaleiro, A. J.; Silva, Sérgio Alves; Alves, M. M.; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Effect of sulfate and iron (III) on LCFA degradation by a methanogenic community". 2015.
  25. Ribeiro, J. A.; Cavaleiro, A. J.; Sousa, D. Z.; Alves, M. M.; Stams, Alfons Johannes Maria. "Characterization of an anaerobic thermophilic glycerol-degrading enrichment culture". 2015.
  26. Salvador, A. F.; Cavaleiro, A. J.; Silva, Sérgio Alves; Guedes, Ana P.; Pereira, M. A.; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado; Alves, M. M.. "Growth of sulfate reducing bacteria on the methanogenic inhibitor BES". 2015.
  27. Alves, J. I.; Salvador, A. F.; Langenhoff, A. A. M.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.; Cavaleiro, A. J.. "Novel anaerobe obtained from a hexadecane-degrading consortium". 2015.
  28. Salvador, A. F.; Strepis, N.; Bize, A.; Stams, Alfons Johannes Maria; Schaap, Peter J.; Alves, M. M.; Bouchez, T.; Sousa, D. Z.. "Proteomics of Syntrophomonas zehnderi and Methanobacterium formicicum growing on long-chain fatty acids". 2015.
  29. Cavaleiro, A. J.; Alves, J. I.; Salvador, A. F.; Paulo, A.; Castro, Rita; Mateus, C.; Stams, Alfons Johannes Maria; et al. "Who is who in anaerobic oil biodegradation?". 2015.
  30. Cavaleiro, A. J.; Duarte, M. S.; Silva, Sérgio Alves; Salvador, A. F.; Guedes, Ana P.; Ribeiro, J. A.; Sousa, Diana Zita Machado; et al. "Energy production from lipids by novel anaerobes". 2015.
  31. Sousa, D. Z.; van Gelder, Antonie H.; Pereira, M. A.; Salvador, A. F.; Sánchez-Andrea, I.; Strepis, N.; Jarzembowska, M.; Alves, M. M.; Stams, Alfons Johannes Maria. "Prospecting fat-degrading anaerobes for biotechnology". 2014.
  32. Cavaleiro, Ana Júlia; Langenhoff, Alette; Smit, M. P. J.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Biodegradation of long chain alkanes and alkenes by enrichment cultures under methanogenic, sulfate-reducing and iron-reducing conditions". 2014.
  33. Guedes, Ana P.; Cavaleiro, A. J.; Silva, Sérgio; Alves, M. M.; Stams, Alfons Johannes Maria; Sousa, D. Z.. "Addition of electron acceptors stimulates methanogenesis from lipids by anaerobic sludge". 2013.
  34. Alves, J. I.; Alves, M. M.; Stams, Alfons Johannes Maria; Plugge, C. M.; Sousa, D. Z.. "Isolation and characterization of two novel thermophilic anaerobic bacteria from syngas - and carbon monoxide - degrading cultures". 2012.
  35. Salvador, A. F.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.. "Microbial diversity and methanogen survival in anaerobic communities degrading long-chain fatty acids". 2011.
  36. Sousa, D. Z.; Cavaleiro, A. J.; Stams, Alfons Johannes Maria; Alves, M. M.. "Anaerobic LCFA degradation: a role for non-syntrophic conversions?". 2010.
  37. Croese, E.; Pereira, M. A.; Euverink, G.; Stams, Alfons Johannes Maria; Geelhoed, J.. "Hydrogen producing microbial communities of the biocathode in a microbial electrolysis cell". 2010.
  38. Sousa, D. Z.; Alves, J. I.; Smidt, H.; Alves, M. M.; Stams, Alfons Johannes Maria. "Population dynamics of LCFA-degrading syntrophic communities exposed to extended contact with sulfate". 2009.
  39. Sousa, D. Z.; Cavaleiro, A. J.; Pereira, M. A.; Alves, J. I.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Anaerobic LCFA degradation: the role of syntrophic and non-syntrophic bacteria". 2009.
  40. Sousa, D. Z.; Cavaleiro, A. J.; Stams, Alfons Johannes Maria; Alves, M. M.. "Non-syntrophic oleate to palmitate conversion in anaerobic bioreactors". 2009.
  41. Sousa, D. Z.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "The microbiology of conversion of long-chain fatty acids (LCFA) to biogas". 2008.
  42. Alves, J. I.; Sousa, D. Z.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "The influence of sulfate on methanogenic LCFA-degrading microbial communities". 2008.
  43. Sousa, D. Z.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Syntrophic LCFA-degraders: “bacteria that can clean soap”". 2008.
  44. Sousa, D. Z.; Pereira, M. A.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.; Alves, J. I.. "Microbial consortia involved in anaerobic degradation of unsaturated and saturated-LCFA show a different composition". 2006.
  45. Sousa, D. Z.; Pereira, M. A.; Altimbas, M.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Molecular monitoring of bacterial and archaeal domains during the anaerobic mineralization of biomass-associated LCFA". 2004.
Conference paper
  1. Pereira, Luciana; Salvador, Andreia F.; Martins, Gilberto; Silva, A. R.; Cavaleiro, Ana Júlia; Pereira, M. A.; Stams, Alfons Johannes Maria; Pereira, M. F. R.; Alves, M. M.. "A wide perspective of carbon materials as catalysts for bioremediation of emerging pollutants and methanogenesis". 2019.
  2. Duarte, Maria Salomé Lira; Oliveira, João Vítor; Magalhães, Carla Isabel Pereira; Salvador, Andreia Filipa Ferreira; Carvalho, Ana Rita Castro; Stams, Alfons Johannes Maria; Cavaleiro, Ana Júlia; Pereira, M. A.; Alves, M. M.. "Aerobic and facultative bacteria: working horses at the service of anaerobic digestion". 2019.
  3. Holohan, B. C.; Duarte, Maria Salomé; Corbacho, M. A. Szabo; Cavaleiro, Ana Júlia; Salvador, Andreia Filipa Ferreira; Frijters, C.; Pacheco-Ruiz, S.; et al. "Perspectives in anaerobic digestion of lipid-rich wastewater". 2017.
  4. Stams, Alfons. "Driving methane or acetate production in anaerobic sludge enrichments by cofactors engineering". Paper presented in AD14 - World Congress on Anaerobic Digestion, Vina del Mar, 2015.
  5. Stams, Alfons. "Sulphate reduction by a methanogenic enrichment culture in a microbial electrosynthesis cell". Paper presented in AD14 - World Congress on Anaerobic Digestion, Vina del Mar, 2015.
  6. Stams, Alfons. "Toxicity of unsaturated and saturated long chain fatty acids towards Methanosaeta concilii". Paper presented in AD14 - World Congress on Anaerobic Digestion, 2015.
  7. Duarte, Maria Salomé Lira; Silva, S. A.; Cavaleiro, A. J.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.. "Comparison of oleate conversion under microaerophilic and anaerobic conditions". 2015.
  8. Pereira, Ana Luísa; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.. "Enrichment of carbon monoxide utilising microorganisms from methanogenic bioreactor sludge". 2014.
  9. Cavaleiro, A. J.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.. "Non-syntrophic reactions in anaerobic unsaturated LCFA conversion by methanogenic sludges". 2013.
  10. Sousa, D. Z.; Salvador, Andreia Filipa Ferreira; Ramos, J.; Guedes, Ana P.; Barbosa, Sónia; Stams, Alfons Johannes Maria; Alves, M. M.; Pereira, M. A.. "Effect of long-chain fatty acids (LCFA) on the prevalence and viability of hydrogenotrophic methanogens". 2013.
  11. Alves, J. I.; Visser, Michael; Stams, Alfons Johannes Maria; Plugge, Caroline M.; Alves, M. M.; Sousa, D. Z.. "Enrichment and microbial characterization of syngas converting anaerobic cultures". 2013.
  12. Pereira, M. A.; Roest, K.; Stams, Alfons Johannes Maria; Akkermans, A. D. L.; Amaral, A. L.; Pons, M. N.; Ferreira, E. C.; Mota, M.; Alves, M. M.. "Image analysis, methanogenic activity and molecular biological techniques to monitor granular sludge from an egsb reactor fed with oleic acid". 2003.
Edited book
  1. Stams, Alfons; Sousa, Diana Z.. Biogenesis of Hydrocarbons. Springer International Publishing. 2019.
    10.1007/978-3-319-53114-4
Journal article
  1. Sousa, João A.B.; Bolgár, Andrea; Christel, Stephan; Dopson, Mark; Bijmans, Martijn F.M.; Stams, Alfons J.M.; Plugge, Caroline M.. "Immobilization of sulfate and thiosulfate-reducing biomass on sand under haloalkaline conditions". Science of The Total Environment 745 (2020): 141017. http://dx.doi.org/10.1016/j.scitotenv.2020.141017.
    10.1016/j.scitotenv.2020.141017
  2. Plugge, Caroline M.; Sousa, João A. B.; Christel, Stephan; Dopson, Mark; Bijmans, Martijn F. M.; Stams, Alfons J. M.; Diender, Martijn. "Syngas as Electron Donor for Sulfate and Thiosulfate Reducing Haloalkaliphilic Microorganisms in a Gas-Lift Bioreactor". Microorganisms 8 9 (2020): 1451. http://dx.doi.org/10.3390/microorganisms8091451.
    10.3390/microorganisms8091451
  3. van der Graaf, Charlotte M.; Sánchez-España, Javier; Yusta, Iñaki; Ilin, Andrey; Shetty, Sudarshan A.; Bale, Nicole J.; Villanueva, Laura; Stams, Alfons J. M.; Sánchez-Andrea, Irene. "Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes". Microorganisms 8 9 (2020): 1275. http://dx.doi.org/10.3390/microorganisms8091275.
    10.3390/microorganisms8091275
  4. Paulo, Lara M.; Hidayat, Mohamad R.; Moretti, Giulio; Stams, Alfons J. M.; Sousa, Diana Z.. "Effect of nickel, cobalt, and iron on methanogenesis from methanol and cometabolic conversion of 1,2-dichloroethene by Methanosarcina barkeri". Biotechnology and Applied Biochemistry 67 5 (2020): 744-750. http://dx.doi.org/10.1002/bab.1925.
    10.1002/bab.1925
  5. Ozuolmez, Derya; Moore, Elisha K.; Hopmans, Ellen C.; Sinninghe Damsté, Jaap S.; Stams, Alfons J. M.; Plugge, Caroline M.. "Butyrate Conversion by Sulfate-Reducing and Methanogenic Communities from Anoxic Sediments of Aarhus Bay, Denmark". Microorganisms 8 4 (2020): 606. http://dx.doi.org/10.3390/microorganisms8040606.
    10.3390/microorganisms8040606
  6. de Vries, Hendrik J.; Stams, Alfons J.M.; Plugge, Caroline M.. "Biodiversity and ecology of microorganisms in high pressure membrane filtration systems". Water Research 172 (2020): 115511. http://dx.doi.org/10.1016/j.watres.2020.115511.
    10.1016/j.watres.2020.115511
  7. Ozuolmez, Derya; Stams, Alfons J. M.; Plugge, Caroline M.. "Propionate Converting Anaerobic Microbial Communities Enriched from Distinct Biogeochemical Zones of Aarhus Bay, Denmark under Sulfidogenic and Methanogenic Conditions". Microorganisms 8 3 (2020): 394. http://dx.doi.org/10.3390/microorganisms8030394.
    10.3390/microorganisms8030394
  8. Magalhães, Carla Pereira; Ribeiro, Joaquim A.; Guedes, Ana P.; Arantes, Ana L.; Sousa, Diana Z.; Stams, Alfons J. M.; Alves, Maria M.; Cavaleiro, Ana Júlia. "Co-cultivation of Thermoanaerobacter strains with a methanogenic partner enhances glycerol conversion". Microbial Biotechnology 13 4 (2020): 962-973. http://dx.doi.org/10.1111/1751-7915.13506.
    10.1111/1751-7915.13506
  9. Arantes, Ana L.; Moreira, João P. C.; Diender, Martijn; Parshina, Sofiya N.; Stams, Alfons J. M.; Alves, M. Madalena; Alves, Joana I.; Sousa, Diana Z.. "Enrichment of Anaerobic Syngas-Converting Communities and Isolation of a Novel Carboxydotrophic Acetobacterium wieringae Strain JM". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.00058.
    10.3389/fmicb.2020.00058
  10. Strepis, Nikolaos; Naranjo, Henry D.; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Klenk, Hans-Peter; et al. "Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species". (2020): http://hdl.handle.net/1822/63866.
    10.1186/s12864-019-6410-x
  11. Duarte, Maria Salomé; Salvador, Andreia F.; Cavaleiro, A. J.; Stams, Alfons Johannes Maria; Pereira, M. A.; Alves, M. M.. "Multiple and flexible roles of facultative anaerobic bacteria in microaerophilic oleate degradation". (2020): http://hdl.handle.net/1822/67138.
    10.1111/1462-2920.15124
  12. van Vliet, Daan M.; Lin, Yuemei; Bale, Nicole J.; Koenen, Michel; Villanueva, Laura; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., two marine anaerobes of the Pontiellaceae fam. nov. producing sulfated glycosaminoglycan-like exopolymers". (2020): http://hdl.handle.net/1822/65698.
    10.3390/microorganisms8060920
  13. Peng, Peng; Goris, Tobias; Lu, Yue; Nijsse, Bart; Burrichter, Anna; Schleheck, David; Koehorst, Jasper J.; et al. "Organohalide-respiring Desulfoluna species isolated from marine environments". (2020): http://hdl.handle.net/1822/64144.
    10.1038/s41396-019-0573-y
  14. Bui, Thi Phuong Nam; Schols, Henk A.; Jonathan, Melliana; Stams, Alfons J. M.; de Vos, Willem M.; Plugge, Caroline M.. "Mutual Metabolic Interactions in Co-cultures of the Intestinal Anaerostipes rhamnosivorans With an Acetogen, Methanogen, or Pectin-Degrader Affecting Butyrate Production". Frontiers in Microbiology 10 (2019): http://dx.doi.org/10.3389/fmicb.2019.02449.
    10.3389/fmicb.2019.02449
  15. Parshina, Sofiya Nikolaevna; Strepis, Nikolaos; Aalvink, Steven; Nozhevnikova, Alla N.; Stams, Alfons J. M.; Sousa, Diana Z.. "Trichococcus shcherbakoviae sp. nov., isolated from a laboratory-scale anaerobic EGSB bioreactor operated at low temperature". International Journal of Systematic and Evolutionary Microbiology 69 2 (2019): 529-534. http://dx.doi.org/10.1099/ijsem.0.003193.
    10.1099/ijsem.0.003193
  16. Cantera, Sara; Sánchez-Andrea, Irene; Sadornil, Lidia J.; García-Encina, Pedro A.; Stams, Alfons J.M.; Muñoz, Raúl. "Novel haloalkaliphilic methanotrophic bacteria: An attempt for enhancing methane bio-refinery". Journal of Environmental Management 231 (2019): 1091-1099. http://dx.doi.org/10.1016/j.jenvman.2018.11.017.
    10.1016/j.jenvman.2018.11.017
  17. de Vries, Hendrik J.; Beyer, Florian; Jarzembowska, Monika; Lipinska, Joanna; van den Brink, Paula; Zwijnenburg, Arie; Timmers, Peer H. A.; Stams, Alfons J. M.; Plugge, Caroline M.. "Isolation and characterization of Sphingomonadaceae from fouled membranes". npj Biofilms and Microbiomes 5 1 (2019): http://dx.doi.org/10.1038/s41522-018-0074-1.
    10.1038/s41522-018-0074-1
  18. Van Vliet, Daan M.; Ayudthaya, S. P. N.; Diop, Sally; Villanueva, Laura; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Anaerobic degradation of sulfated polysaccharides by two novel Kiritimatiellales strains isolated from Black Sea sediment". (2019): http://hdl.handle.net/1822/59267.
    10.3389/fmicb.2019.00253
  19. Florentino, Anna P.; Pereira, Inês A. C.; Boeren, Sjef; Born, Michael; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Insight into the sulfur metabolism of Desulfurella amilsii by differential proteomics". (2019): http://hdl.handle.net/1822/58397.
    10.1111/1462-2920.14442
  20. Diender, Martijn; Parera Olm, Ivette; Gelderloos, Marten; Koehorst, Jasper J.; Schaap, Peter J.; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas". (2019): http://hdl.handle.net/1822/62596.
    10.1038/s41598-019-54445-y
  21. Salvador, Andreia F.; Cavaleiro, Ana Júlia; Paulo, Ana M. S.; Silva, Sérgio Alves; Guedes, Ana P.; Pereira, M. Alcina; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado; Alves, M. M.. "Inhibition studies with 2-bromoethanesulfonate reveal a novel syntrophic relationship in anaerobic oleate degradation". (2019): http://hdl.handle.net/1822/58400.
    10.1128/AEM.01733-18
  22. Cantera, S.; Sánchez-Andrea, I.; Lebrero, R.; García-Encina, P.A.; Stams, Alfons J.M.; Muñoz, R.. "Multi-production of high added market value metabolites from diluted methane emissions via methanotrophic extremophiles". Bioresource Technology 267 (2018): 401-407. http://dx.doi.org/10.1016/j.biortech.2018.07.057.
    10.1016/j.biortech.2018.07.057
  23. Feng, Yuan; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene; De Vos, Willem M.. "Eubacterium maltosivorans sp. nov., a novel human intestinal acetogenic and butyrogenic bacterium with a versatile metabolism". (2018): http://hdl.handle.net/1822/65554.
    10.1099/ijsem.0.003028
  24. Sedano-Núñez, Vicente T.; Boeren, Sjef; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Comparative proteome analysis of propionate degradation by Syntrophobacter fumaroxidans in pure culture and in coculture with methanogens". (2018): http://hdl.handle.net/1822/55077.
    10.1111/1462-2920.14119
  25. Arantes, Ana L.; Alves, J. I.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Enrichment of syngas-converting communities from a multi-orifice baffled bioreactor". (2018): http://hdl.handle.net/1822/55172.
    10.1111/1751-7915.12864
  26. Sánchez-Andrea, Irene; Florentino, Anna Patrícya; Semerel, Jeltzlin; Strepis, Nikolaos; Sousa, Diana Zita Machado; Stams, Alfons Johannes Maria. "Co-culture of a novel fermentative bacterium, Lucifera butyrica gen. nov. sp. nov., with the sulfur reducer Desulfurella amilsii for enhanced sulfidogenesis". (2018): http://hdl.handle.net/1822/57478.
    10.3389/fmicb.2018.03108
  27. Santos, Sidnei C.; Liebensteiner, Martin G.; van Gelder, Antonie H.; Dimitrov, Mauricio R.; Almeida, Paulo F.; Quintella, Cristina M.; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Bacterial glycerol oxidation coupled to sulfate reduction at neutral and acidic pH". (2018): http://hdl.handle.net/1822/54421.
    10.2323/jgam.2017.02.009
  28. Sousa, Diana Zita Machado; Visser, Michael; van Gelder, Antonie H.; Boeren, Sjef; Pieterse, Mervin M.; Pinkse, Martijn W. H.; Verhaert, Peter D. E. M.; et al. "The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways". (2018): http://hdl.handle.net/1822/51165.
    10.1038/s41467-017-02518-9
  29. Paulo, Ana M. S.; Salvador, Andreia F.; Alves, J. I.; Castro, Rita; Langenhoff, A. A. M.; Stams, Alfons Johannes Maria; Cavaleiro, A. J.. "Enhancement of methane production from 1-hexadecene by additional electron donors". (2018): http://hdl.handle.net/1822/55176.
    10.1111/1751-7915.12886
  30. Atashgahi, Siavash; Hornung, Bastian; van der Waals, Marcelle J.; da Rocha, Ulisses Nunes; Hugenholtz, Floor; Nijsse, Bart; Molenaar, Douwe; et al. "A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways". (2018): http://hdl.handle.net/1822/61442.
    10.1038/s41598-018-22617-x
  31. Timmers, Peer H. A.; Vavourakis, Charlotte D.; Kleerebezem, Robbert; Damste, Jaap S. Sinninghe; Muyzer, Gerard; Stams, Alfons Johannes Maria; Sorokin, Dimitry Y.; Plugge, Caroline M.. "Metabolism and occurrence of methanogenic and sulfate-reducing syntrophic acetate oxidizing communities in haloalkaline environments". (2018): http://hdl.handle.net/1822/57412.
    10.3389/fmicb.2018.03039
  32. Atashgahi, Siavash; Liebensteiner, Martin G.; Janssen, Dick B.; Smidt, Hauke; Stams, Alfons Johannes Maria; Sipkema, Detmer. "Microbial synthesis and transformation of inorganic and organic chlorine compounds". (2018): http://hdl.handle.net/1822/57477.
    10.3389/fmicb.2018.03079
  33. Hidalgo, Catalina A; Nobu, Masaru K; Narihiro, Takashi; Tamaki, Hideyuki; Liu, Wen-Tso; Kamagata, Yoichi; Stams, Alfons Johannes Maria; Imachi, Hiroyuki; Sousa, Diana Zita Machado. "Novel energy conservation strategies and behavior of Pelotomaculum schinkii driving syntrophic propionate catabolism". (2018): http://hdl.handle.net/1822/57410.
    10.1111/1462-2920.14388
  34. Diender, Martijn; Uhl, Philipp; Bitter, Johannes Hendrik; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "High rate biomethanation of carbon monoxide rich gases via a thermophilic synthetic co-culture". (2018): http://hdl.handle.net/1822/51754.
    10.1021/acssuschemeng.7b03601
  35. Palakawong Na Ayudthaya, Susakul; van de Weijer, Antonius H. P.; van Gelder, Antonie H.; Stams, Alfons Johannes Maria; de Vos, Willem M.; Plugge, Caroline M.. "Organic acid production from potato starch waste fermentation by rumen microbial communities from Dutch and Thai dairy cows". (2018): http://hdl.handle.net/1822/50458.
    10.1186/s13068-018-1012-4
  36. Atashgahi, Siavash; Sánchez-Andrea, Irene; Heipieper, Hermann J.; van der Meer, Jan R.; Stams, Alfons Johannes Maria; Smidt, Hauke. "Prospects for harnessing biocide resistance for bioremediation and detoxification". (2018): http://hdl.handle.net/1822/54808.
    10.1126/science.aar3778
  37. Duarte, Maria Salomé; Silva, Sérgio A.; Salvador, Andreia F.; Cavaleiro, A. J.; Stams, Alfons Johannes Maria; Alves, M. M.; Pereira, M. A.. "Insight into the role of facultative bacteria stimulated by micro-aeration in continuous bioreactors converting LCFA to methane". (2018): http://hdl.handle.net/1822/55174.
    10.1021/acs.est.8b00894
  38. Hageman, Simon P.W.; van der Weijden, Renata D.; Stams, Alfons J.M.; Buisman, Cees J.N.. "Bio-production of selenium nanoparticles with diverse physical properties for recovery from water". International Journal of Mineral Processing 169 (2017): 7-15. http://dx.doi.org/10.1016/j.minpro.2017.09.018.
    10.1016/j.minpro.2017.09.018
  39. Gagliano, M.C.; Ismail, S.B.; Stams, A.J.M.; Plugge, C.M.; Temmink, H.; Van Lier, J.B.. "Biofilm formation and granule properties in anaerobic digestion at high salinity". Water Research 121 (2017): 61-71. http://dx.doi.org/10.1016/j.watres.2017.05.016.
    10.1016/j.watres.2017.05.016
  40. Hageman, S.P.W.; van der Weijden, R.D.; Stams, A.J.M.; van Cappellen, P.; Buisman, C.J.N.. "Microbial selenium sulfide reduction for selenium recovery from wastewater". Journal of Hazardous Materials 329 (2017): 110-119. http://dx.doi.org/10.1016/j.jhazmat.2016.12.061.
    10.1016/j.jhazmat.2016.12.061
  41. Khadem, Ahmad F.; Azman, Samet; Plugge, Caroline M.; Zeeman, Grietje; van Lier, Jules B.; Stams, Alfons J.M.. "Effect of humic acids on the activity of pure and mixed methanogenic cultures". Biomass and Bioenergy 99 (2017): 21-30. http://dx.doi.org/10.1016/j.biombioe.2017.02.012.
    10.1016/j.biombioe.2017.02.012
  42. Feng, Yuan; Stams, Alfons J.M.; de Vos, Willem. M.; Sánchez-Andrea, Irene. "Enrichment of sulfidogenic bacteria from the human intestinal tract". FEMS Microbiology Letters 364 4 (2017): http://dx.doi.org/10.1093/femsle/fnx028.
    10.1093/femsle/fnx028
  43. Paulo, Ana M. S.; Aydin, Rozelin; Dimitrov, Mauricio R.; Vreeling, Harm; Cavaleiro, Ana Júlia; García-Encina, Pedro A.; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Sodium lauryl ether sulfate (SLES) degradation by nitrate-reducing bacteria". (2017): http://hdl.handle.net/1822/46727.
    10.1007/s00253-017-8212-x
  44. Salvador, Andreia F.; Martins, Gilberto; Melle-Franco, Manuel; Serpa, Ricardo; Stams, Alfons Johannes Maria; Cavaleiro, Ana Júlia; Pereira, M. Alcina; Alves, M. M.. "Carbon nanotubes accelerate methane production in pure cultures of methanogens and in a syntrophic coculture". (2017): http://hdl.handle.net/1822/47659.
    10.1111/1462-2920.13774
  45. Timmers, P. H. A.; Welte, C. U.; Koehorst, J. J.; Plugge, C. M.; Jetten, M. S. M.; Stams, Alfons Johannes Maria. "Reverse methanogenesis and respiration in methanotrophic archaea". (2017): http://hdl.handle.net/1822/47121.
    10.1155/2017/1654237
  46. Atashgahi, Siavash; Lu, Yue; Zheng, Ying; Saccenti, Edoardo; Suarez-Diez, Maria; Ramiro-Garcia, Javier; Eisenmann, Heinrich; et al. "Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol". (2017): http://hdl.handle.net/1822/46344.
    10.1111/1462-2920.13531
  47. Sousa, João A. B.; Bijmans, Martijn F. M.; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Thiosulfate conversion to sulfide by a haloalkaliphilic microbial community in a bioreactor fed with H2 gas". (2017): http://hdl.handle.net/1822/46273.
    10.1021/acs.est.6b04497
  48. Paulo, Lara M.; Ramiro-Garcia, Javier; van Mourik, Simon; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Effect of nickel and cobalt on methanogenic enrichment cultures and role of biogenic sulfide in metal toxicity attenuation". (2017): http://hdl.handle.net/1822/46897.
    10.3389/fmicb.2017.01341
  49. Florentino, Anna; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Genome sequence of Desulfurella amilsii strain TR1 and comparative genomics of Desulfurellaceae family". (2017): http://hdl.handle.net/1822/46348.
    10.3389/fmicb.2017.00222
  50. Peng, P.; Zheng, Y.; Koehorst, J. J.; Schaap, Peter J.; Stams, Alfons Johannes Maria; Smidt, H.; Atashgahi, S.. "Concurrent haloalkanoate degradation and chlorate reduction by Pseudomonas chloritidismutans AW-1T". (2017): http://hdl.handle.net/1822/52722.
    10.1128/AEM.00325-17
  51. Timmers, Peer H. A.; Widjaja-Greefkes, H. C. Aura; Plugge, Caroline M.; Stams, Alfons Johannes Maria. "Evaluation and optimization of PCR primers for selective and quantitative detection of marine ANME subclusters involved in sulfate-dependent anaerobic methane oxidation". (2017): http://hdl.handle.net/1822/47423.
    10.1007/s00253-017-8338-x
  52. Azman, Samet; Khadem, Ahmad F.; Plugge, Caroline M.; Stams, Alfons J. M.; Bec, Sabina; Zeeman, Grietje. "Effect of humic acid on anaerobic digestion of cellulose and xylan in completely stirred tank reactors: inhibitory effect, mitigation of the inhibition and the dynamics of the microbial communities.". Applied Microbiology and Biotechnology 101 2 (2017): 889-901. http://dx.doi.org/10.1007/s00253-016-8010-x.
    10.1007/s00253-016-8010-x
  53. Beyer, Florian; Laurinonyte, Judita; Zwijnenburg, Arie; Stams, Alfons J. M.; Plugge, Caroline M.. "Membrane Fouling and Chemical Cleaning in Three Full-Scale Reverse Osmosis Plants Producing Demineralized Water". Journal of Engineering 2017 (2017): 1-14. http://dx.doi.org/10.1155/2017/6356751.
    10.1155/2017/6356751
  54. Palakawong N.A., Susakul; Pristaš, Peter; Hrehová, Ludmila; Javorský, Peter; Stams, Alfons J.M.; Plugge, Caroline M.. "Actinomyces succiniciruminis sp. nov. and Actinomyces glycerinitolerans sp. nov., two novel organic acid-producing bacteria isolated from rumen". Systematic and Applied Microbiology 39 7 (2016): 445-452. http://dx.doi.org/10.1016/j.syapm.2016.08.001.
    10.1016/j.syapm.2016.08.001
  55. Sánchez-Andrea, Irene; Stams, Alfons J. M.; Weijma, Jan; Gonzalez Contreras, Paula; Dijkman, Henk; Rozendal, Rene A.; Johnson, D. Barrie. "A case in support of implementing innovative bio-processes in the metal mining industry". FEMS Microbiology Letters 363 11 (2016): fnw106. http://dx.doi.org/10.1093/femsle/fnw106.
    10.1093/femsle/fnw106
  56. Jarzembowska, Monika; Sousa, Diana Z.; Beyer, Florian; Zwijnenburg, Arie; Plugge, Caroline M.; Stams, Alfons J. M.. "Lachnotalea glycerini gen. nov., sp. nov., an anaerobe isolated from a nanofiltration unit treating anoxic groundwater". International Journal of Systematic and Evolutionary Microbiology 66 2 (2016): 774-779. http://dx.doi.org/10.1099/ijsem.0.000791.
    10.1099/ijsem.0.000791
  57. Diender, Martijn; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Production of medium-chain fatty acids and higher alcohols by a synthetic co-culture grown on carbon monoxide or syngas". (2016): http://hdl.handle.net/1822/41478.
    10.1186/s13068-016-0495-0
  58. Visser, Michael; Pieterse, Mervin M.; Pinkse, Martijn W. H.; Nijsse, Bart; Verhaert, Peter D. E. M.; Vos, Willem M. de; Schaap, Peter J.; Stams, Alfons Johannes Maria. "Unravelling the one-carbon metabolism of the acetogen Sporomusa strain An4 by genome and proteome analysis". (2016): http://hdl.handle.net/1822/42680.
    10.1111/1462-2920.12973
  59. Visser, Michael; Stams, Alfons Johannes Maria; Frutschi, Manon; Bernier-Latmani, Rizlan. "Phylogenetic comparison of Desulfotomaculum species of subgroup 1a and description of Desulfotomaculum reducens sp. nov.". (2016): http://hdl.handle.net/1822/44654.
    10.1099/ijsem.0.000786
  60. Liebensteiner, Martin G.; Oosterkamp, Margreet J.; Stams, Alfons Johannes Maria. "Microbial respiration with chlorine oxyanions: diversity and physiological and biochemical properties of chlorate- and perchlorate-reducing microorganisms". (2016): http://hdl.handle.net/1822/41413.
    10.1111/nyas.12806
  61. Silva, Sérgio Alves; Salvador, Andreia Filipa Ferreira; Cavaleiro, A. J.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Toxicity of long chain fatty acids towards acetate conversion by Methanosaeta concilii and Methanosarcina mazei". (2016): http://hdl.handle.net/1822/42131.
    10.1111/1751-7915.12365
  62. Diender, Martijn; Pereira, Ricardo A. G.; Wessels, Hans J. C. T.; Stams, Alfons Johannes Maria; Sousa, Diana Z. "Proteomic analysis of the hydrogen and carbon monoxide metabolism of Methanothermobacter marburgensis". (2016): http://hdl.handle.net/1822/43295.
    10.3389/fmicb.2016.01049
  63. Mehboob, Farrakh; Oosterkamp, Margreet J.; Koehorst, Jasper J.; Farrakh, Sumaira; Veuskens, Teun; Plugge, Caroline M.; Boeren, Sjef; et al. "Genome and proteome analysis of Pseudomonas chloritidismutans AW-1T that grows on n-decane with chlorate or oxygen as electron acceptor". (2016): http://hdl.handle.net/1822/42868.
    10.1111/1462-2920.12880
  64. Alves, Joana Isabel Ferreira; Alves, M. M.; Plugge, Caroline M.; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Comparative analysis of carbon monoxide tolerance among Thermoanaerobacter species". (2016): http://hdl.handle.net/1822/42692.
    10.3389/fmicb.2016.01330
  65. Strepis, Nikolaos; Sánchez-Andrea, Irene; van Gelder, Antonie H.; van Kruistum, Henri; Shapiro, Nicole; Kyrpides, Nikos; Göker, Markus; et al. "Description of Trichococcus ilyis sp. nov. by combined physiological and in silico genome hybridization analyses". (2016): http://hdl.handle.net/1822/47806.
    10.1099/ijsem.0.001294
  66. Timmers, Peer H. A.; Suarez-Zuluaga, Diego A.; Rossem, Minke van; Diender, Martijn; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Anaerobic oxidation of methane associated with sulfate reduction in a natural freshwater gas source". (2016): http://hdl.handle.net/1822/41719.
    10.1038/ismej.2015.213
  67. Cavaleiro, A. J.; Pereira, M. A.; Guedes, Ana P.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Conversion of Cn-unsaturated into Cn-2-saturated LCFA can occur uncoupled from methanogenesis in anaerobic bioreactors". (2016): http://hdl.handle.net/1822/41407.
    10.1021/acs.est.5b03204
  68. Florentino, Anna P.; Brienza, Claudio; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Desulfurella amilsii sp. nov., a novel acidotolerant sulfur-respiring bacterium isolated from acidic river sediments". (2016): http://hdl.handle.net/1822/43306.
    10.1099/ijsem.0.000866
  69. Geelhoed, Jeanine S.; Henstra, Anne M.; Stams, Alfons J. M.. "Carboxydotrophic growth of Geobacter sulfurreducens". Applied Microbiology and Biotechnology 100 2 (2015): 997-1007. http://dx.doi.org/10.1007/s00253-015-7033-z.
    10.1007/s00253-015-7033-z
  70. Suarez-Zuluaga, Diego A.; Timmers, Peer H. A.; Plugge, Caroline M.; Stams, Alfons J. M.; Buisman, Cees J. N.; Weijma, Jan. "Thiosulphate conversion in a methane and acetate fed membrane bioreactor". Environmental Science and Pollution Research 23 3 (2015): 2467-2478. http://dx.doi.org/10.1007/s11356-015-5344-3.
    10.1007/s11356-015-5344-3
  71. Moore, Eli K.; Hopmans, Ellen C.; Rijpstra, W. Irene C.; Sánchez-Andrea, Irene; Villanueva, Laura; Wienk, Hans; Schoutsen, Frans; Stams, Alfons J. M.; Sinninghe Damsté, Jaap S.. "Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans". Frontiers in Microbiology 6 (2015): http://dx.doi.org/10.3389/fmicb.2015.00637.
    10.3389/fmicb.2015.00637
  72. Sousa, João A.B.; Plugge, Caroline M.; Stams, Alfons J.M.; Bijmans, Martijn F.M.. "Sulfate reduction in a hydrogen fed bioreactor operated at haloalkaline conditions". Water Research 68 (2015): 67-76. http://dx.doi.org/10.1016/j.watres.2014.09.035.
    10.1016/j.watres.2014.09.035
  73. Liebensteiner, Martin G.; Pinkse, Martijn W. H.; Nijsse, Bart; Verhaert, Peter D. E. M.; Tsesmetzis, Nicolas; Stams, Alfons Johannes Maria; Lomans, Bart P.. "Perchlorate and chlorate reduction by the Crenarchaeon Aeropyrum pernix and two thermophilic Firmicutes". (2015): http://hdl.handle.net/1822/38532.
    10.1111/1758-2229.12335
  74. Timmers, Peer H. A.; Gieteling, Jarno; Widjaja-Greefkes, H. C. Aura; Plugge, C. M.; Stams, Alfons Johannes Maria; Lens, Piet N. L.; Meulepas, Roel J. W.. "Growth of anaerobic methane-oxidizing archaea and sulfate reducing bacteria in a high pressure membrane-capsule bioreactor". (2015): http://hdl.handle.net/1822/37170.
    10.1128/AEM.03255-14
  75. Rodríguez, Elisa; García-Encina, Pedro A.; Stams, Alfons Johannes Maria; Maphosa, Farai; Sousa, D. Z.. "Meta-omics approaches to understand and improve wastewater treatment systems". (2015): http://hdl.handle.net/1822/36844.
    10.1007/s11157-015-9370-x
  76. Oosterkamp, Margreet J.; Boeren, Sjef; Atashgahi, Siavash; Plugge, Caroline M.; Schaap, Peter J.; Stams, Alfons Johannes Maria. "Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC". (2015): http://hdl.handle.net/1822/41757.
    10.1093/femsle/fnv080
  77. Pereira, Luciana; Mehboob, F.; Stams, Alfons Johannes Maria; Mota, M.; Rijnaarts, H. H. M.; Alves, M. M.. "Metallic nanoparticles: microbial synthesis and unique properties for biotechnological applications, bioavailability and biotransformation". (2015): http://hdl.handle.net/1822/37040.
    10.3109/07388551.2013.819484
  78. Florentino, Anna P.; Weijma, Jan; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Sulfur reduction in acid rock drainage environments". (2015): http://hdl.handle.net/1822/37613.
    10.1021/acs.est.5b03346
  79. Timmers, Peer H. A.; Widjaja-Greefkes, H. C. Aura; Ramiro-Garcia, Javier; Plugge, C. M.; Stams, Alfons Johannes Maria. "Growth and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane". (2015): http://hdl.handle.net/1822/37571.
    10.3389/fmicb.2015.00988
  80. Sousa, João A. B.; Sorokin, Dimitry Y.; Bijmans, Martijn F. M.; Plugge, Caroline M.; Stams, Alfons Johannes Maria. "Ecology and application of haloalkaliphilic anaerobic microbial communities". (2015): http://hdl.handle.net/1822/38070.
    10.1007/s00253-015-6937-y
  81. Diender, Martijn; Stams, Alfons Johannes Maria; Sousa, D. Z.. "Pathways and bioenergetics of anaerobic carbon monoxide fermentation". (2015): http://hdl.handle.net/1822/38535.
    10.3389/fmicb.2015.01275
  82. Paulo, Lara M.; Stams, Alfons Johannes Maria; Sousa, D. Z.. "Methanogens, sulphate and heavy metals: a complex system". (2015): http://hdl.handle.net/1822/38528.
    10.1007/s11157-015-9387-1
  83. Kruse, Thomas; van de Pas, Bram A.; Atteia, Ariane; Krab, Klaas; Hagen, Wilfred R.; Goodwin, Lynne; Chain, Patrick; et al. "Genomic, Proteomic, and Biochemical Analysis of the Organohalide Respiratory Pathway in Desulfitobacterium dehalogenans". Journal of Bacteriology 197 5 (2014): 893-904. http://dx.doi.org/10.1128/jb.02370-14.
    10.1128/jb.02370-14
  84. Sánchez-Andrea, Irene; Sanz, Jose Luis; Stams, Alfons J. M.. "Microbacter margulisiae gen. nov., sp. nov., a propionigenic bacterium isolated from sediments of an acid rock drainage pond". International Journal of Systematic and Evolutionary Microbiology 64 Pt_12 (2014): 3936-3942. http://dx.doi.org/10.1099/ijs.0.066241-0.
    10.1099/ijs.0.066241-0
  85. Liebensteiner, M.G.; Stams, A.J.M.; Lomans, B.P.. "(Per)chlorate reduction at high temperature: Physiological study of Archaeoglobus fulgidus and potential implications for novel souring mitigation strategies". International Biodeterioration & Biodegradation 96 (2014): 216-222. http://dx.doi.org/10.1016/j.ibiod.2014.07.019.
    10.1016/j.ibiod.2014.07.019
  86. Sánchez-Andrea, Irene; Stams, Alfons J. M.; Hedrich, Sabrina; Nancucheo, Ivan; Johnson, D. Barrie. "Desulfosporosinus acididurans sp. nov.: an acidophilic sulfate-reducing bacterium isolated from acidic sediments". Extremophiles 19 1 (2014): 39-47. http://dx.doi.org/10.1007/s00792-014-0701-6.
    10.1007/s00792-014-0701-6
  87. Beyer, Florian; Rietman, Bas M.; Zwijnenburg, Arie; van den Brink, Paula; Vrouwenvelder, Johannes S.; Jarzembowska, Monika; Laurinonyte, Judita; Stams, Alfons J.M.; Plugge, Caroline M.. "Long-term performance and fouling analysis of full-scale direct nanofiltration (NF) installations treating anoxic groundwater". Journal of Membrane Science 468 (2014): 339-348. http://dx.doi.org/10.1016/j.memsci.2014.06.004.
    10.1016/j.memsci.2014.06.004
  88. Dalla Vecchia, Elena; Visser, Michael; Stams, Alfons J. M.; Bernier-Latmani, Rizlan. "Investigation of sporulation in the Desulfotomaculum genus: a genomic comparison with the genera Bacillus and Clostridium". Environmental Microbiology Reports 6 6 (2014): 756-766. http://dx.doi.org/10.1111/1758-2229.12200.
    Published • 10.1111/1758-2229.12200
  89. Dorer, Conrad; Vogt, Carsten; Kleinsteuber, Sabine; Stams, Alfons J. M.; Richnow, Hans-Hermann. "Compound-Specific Isotope Analysis as a Tool To Characterize Biodegradation of Ethylbenzene". Environmental Science & Technology 48 16 (2014): 9122-9132. http://dx.doi.org/10.1021/es500282t.
    10.1021/es500282t
  90. van Gelder, Antonie H.; Sousa, Diana Z.; Rijpstra, W. Irene C.; Damsté, Jaap S. Sinninghe; Stams, Alfons J. M.; Sánchez-Andrea, Irene. "Ercella succinigenes gen. nov., sp. nov., an anaerobic succinate-producing bacterium". International Journal of Systematic and Evolutionary Microbiology 64 Pt_7 (2014): 2449-2454. http://dx.doi.org/10.1099/ijs.0.058966-0.
    10.1099/ijs.0.058966-0
  91. Griffioen, Jasper; van Wensem, Joke; Oomes, Justine L.M.; Barends, Frans; Breunese, Jaap; Bruining, Hans; Olsthoorn, Theo; Stams, Alfons J.M.; van der Stoel, Almer E.C.. "A technical investigation on tools and concepts for sustainable management of the subsurface in The Netherlands". Science of The Total Environment 485-486 (2014): 810-819. http://dx.doi.org/10.1016/j.scitotenv.2014.02.114.
    10.1016/j.scitotenv.2014.02.114
  92. Croese, Elsemiek; Jeremiasse, Adriaan W.; Marshall, Ian P.G.; Spormann, Alfred M.; Euverink, Gert-Jan W.; Geelhoed, Jeanine S.; Stams, Alfons J.M.; Plugge, Caroline M.. "Influence of setup and carbon source on the bacterial community of biocathodes in microbial electrolysis cells". Enzyme and Microbial Technology 61-62 (2014): 67-75. http://dx.doi.org/10.1016/j.enzmictec.2014.04.019.
    10.1016/j.enzmictec.2014.04.019
  93. Kuever, Jan; Visser, Michael; Loeffler, Claudia; Boll, Mathias; Worm, Petra; Sousa, D. Z.; Plugge, Caroline M.; et al. "Genome analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium". (2014): http://hdl.handle.net/1822/31575.
    10.4056/sigs.5209235
  94. Visser, Michael; Parshina, Sofiya N.; Alves, Joana I.; Sousa, D. Z.; Pereira, Inês A. C.; Muyzer, Gerard; Kuever, Jan; et al. "Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans". (2014): http://hdl.handle.net/1822/31833.
    10.4056/sigs.4718645
  95. Silva, Sérgio; Cavaleiro, A. J.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.. "Long-term acclimation of anaerobic sludges for high-rate methanogenesis from LCFA". (2014): http://hdl.handle.net/1822/31886.
    10.1016/j.biombioe.2014.05.012
  96. Worm, Petra; Koehorst, Jasper J.; Visser, Michael; Sedano-Núñez, Vicente T.; Schaap, Peter J.; Plugge, Caroline M.; Sousa, D. Z.; Stams, Alfons Johannes Maria. "A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities". (2014): http://hdl.handle.net/1822/31430.
    10.1016/j.bbabio.2014.06.005
  97. Liebensteiner, Martin G.; Tsesmetzis, N.; Stams, Alfons Johannes Maria; Lomans, Bart P.. "Microbial redox processes in deep subsurface environments and the potential application of (per)chlorate in oil reservoirs". (2014): http://hdl.handle.net/1822/31447.
    10.3389/fmicb.2014.00428
  98. Sánchez-Andrea, Irene; Sanz, Jose Luis; Bijmans, Martijn F. M.; Stams, Alfons Johannes Maria. "Sulfate reduction at low pH to remediate acid mine drainage". (2014): http://hdl.handle.net/1822/31518.
    10.1016/j.jhazmat.2013.12.032
  99. Spirito, Catherine M.; Richter, Hanno; Rabaey, Korneel; Stams, Alfons Johannes Maria; Angenent, Largus T.. "Chain elongation in anaerobic reactor microbiomes to recover resources from waste". (2014): http://hdl.handle.net/1822/31904.
    10.1016/j.copbio.2014.01.003
  100. Paulo, A.M.S.; Plugge, C.M.; García-Encina, P.A.; Stams, A.J.M.. "Anaerobic degradation of sodium dodecyl sulfate (SDS) by denitrifying bacteria". International Biodeterioration & Biodegradation 84 (2013): 14-20. http://dx.doi.org/10.1016/j.ibiod.2013.05.027.
    10.1016/j.ibiod.2013.05.027
  101. Croese, Elsemiek; Keesman, Karel J.; Widjaja-Greefkes, (Aura) H.C.A.; Geelhoed, Jeanine S.; Plugge, Caroline M.; Sleutels, Tom H.J.A.; Stams, Alfons J.M.; Euverink, Gert-Jan W.. "Relating MEC population dynamics to anode performance from DGGE and electrical data". Systematic and Applied Microbiology 36 6 (2013): 408-416. http://dx.doi.org/10.1016/j.syapm.2013.05.004.
    10.1016/j.syapm.2013.05.004
  102. Oosterkamp, Margreet J.; Boeren, Sjef; Plugge, Caroline M.; Schaap, Peter J.; Stams, Alfons J. M.. "Metabolic response of Alicycliphilus denitrificans strain BC toward electron acceptor variation". PROTEOMICS 13 18-19 (2013): 2886-2894. http://dx.doi.org/10.1002/pmic.201200571.
    10.1002/pmic.201200571
  103. Sánchez-Andrea, Irene; Stams, Alfons J. M.; Amils, Ricardo; Sanz, José Luis. "Enrichment and isolation of acidophilic sulfate-reducing bacteria from Tinto River sediments". Environmental Microbiology Reports (2013): n/a-n/a. http://dx.doi.org/10.1111/1758-2229.12066.
    10.1111/1758-2229.12066
  104. Bielen, Abraham A.M.; Verhaart, Marcel R.A.; VanFossen, Amy L.; Blumer-Schuette, Sara E.; Stams, Alfons J.M.; van der Oost, John; Kelly, Robert M.; Kengen, Servé W.M.. "A thermophile under pressure: Transcriptional analysis of the response of Caldicellulosiruptor saccharolyticus to different H2 partial pressures". International Journal of Hydrogen Energy 38 4 (2013): 1837-1849. http://dx.doi.org/10.1016/j.ijhydene.2012.11.082.
    10.1016/j.ijhydene.2012.11.082
  105. Sousa, D. Z.; Salvador, Andreia Filipa Ferreira; Ramos, Juliana; Guedes, Ana P.; Barbosa, Sónia; Stams, Alfons Johannes Maria; Alves, M. M.; Pereira, M. A.. "Activity and viability of methanogens in anaerobic digestion of unsaturated and saturated long-chain fatty acids". (2013): http://hdl.handle.net/1822/27460.
    10.1128/AEM.00035-13
  106. Alves, J. I.; Stams, Alfons Johannes Maria; Plugge, Caroline M.; Alves, M. M.; Sousa, D. Z.. "Enrichment of anaerobic syngas-converting bacteria from thermophilic bioreactor sludge". (2013): http://hdl.handle.net/1822/27737.
    10.1111/1574-6941.12185
  107. Oosterkamp, Margreet J.; Veuskens, Teun; Talarico Saia, Flávia; Weelink, Sander A. B.; Goodwin, Lynne A.; Daligault, Hajnalka E.; Bruce, David C.; et al. "Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601T". (2013): http://hdl.handle.net/1822/44514.
    10.1371/journal.pone.0066971
  108. Visser, Michael; Worm, Petra; Muyzer, Gerard; Pereira, Inês A. C.; Schaap, Peter J.; Plugge, Caroline M.; Kuever, Jan; et al. "Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum SIT". (2013): http://hdl.handle.net/1822/25457.
  109. Liebensteiner, Martin G.; Pinkse, Martijn W. H.; Schaap, Peter J.; Stams, Alfons Johannes Maria; Lomans, Bart P.. "Archaeal (per)chlorate reduction at high temperature: an interplay of biotic and abiotic reactions". (2013): http://hdl.handle.net/1822/27434.
    10.1126/science.1233957
  110. Van Eerten-Jansen, Mieke C. A. A.; Veldhoen, Anna B.; Plugge, Caroline M.; Stams, Alfons J. M.; Buisman, Cees J. N.; Ter Heijne, Annemiek. "Microbial Community Analysis of a Methane-Producing Biocathode in a Bioelectrochemical System". Archaea 2013 (2013): 1-12. http://dx.doi.org/10.1155/2013/481784.
    10.1155/2013/481784
  111. Spring, Stefan; Visser, Michael; Lu, Megan; Copeland, Alex; Lapidus, Alla; Lucas, Susan; Cheng, Jan-Fang; et al. "Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)". Standards in Genomic Sciences 7 2 (2012): 294-309. http://dx.doi.org/10.4056/sigs.3226659.
    10.4056/sigs.3226659
  112. Regueiro, Leticia; Veiga, Patricia; Figueroa, Mónica; Alonso-Gutierrez, Jorge; Stams, Alfons J.M.; Lema, Juan M.; Carballa, Marta. "Relationship between microbial activity and microbial community structure in six full-scale anaerobic digesters". Microbiological Research 167 10 (2012): 581-589. http://dx.doi.org/10.1016/j.micres.2012.06.002.
    10.1016/j.micres.2012.06.002
  113. Walter, S.; Laukenmann, S.; Stams, A. J. M.; Vollmer, M. K.; Gleixner, G.; Röckmann, T.. "The stable isotopic signature of biologically produced molecular hydrogen (H-2)". Biogeosciences 9 10 (2012): 4115-4123. http://dx.doi.org/10.5194/bg-9-4115-2012.
    10.5194/bg-9-4115-2012
  114. Plugge, Caroline M.; Henstra, Anne M.; Worm, Petra; Swarts, Daan C.; Paulitsch-Fuchs, Astrid H.; Scholten, Johannes C.M.; Lykidis, Athanasios; et al. "Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOBT)". Standards in Genomic Sciences 7 1 (2012): 91-106. http://dx.doi.org/10.4056/sigs.2996379.
    10.4056/sigs.2996379
  115. Klok, Johannes B. M.; van den Bosch, Pim L. F.; Buisman, Cees J. N.; Stams, Alfons J. M.; Keesman, Karel J.; Janssen, Albert J. H.. "Pathways of Sulfide Oxidation by Haloalkaliphilic Bacteria in Limited-Oxygen Gas Lift Bioreactors". Environmental Science & Technology 46 14 (2012): 7581-7586. http://dx.doi.org/10.1021/es301480z.
    10.1021/es301480z
  116. Khan, M Tanweer; Duncan, Sylvia H; Stams, Alfons J M; van Dijl, Jan Maarten; Flint, Harry J; Harmsen, Hermie J M. "The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic–anoxic interphases". The ISME Journal 6 8 (2012): 1578-1585. http://dx.doi.org/10.1038/ismej.2012.5.
    10.1038/ismej.2012.5
  117. van der Zaan, Bas M.; Saia, Flávia Talarico; Stams, Alfons J. M.; Plugge, Caroline M.; de Vos, Willem M.; Smidt, Hauke; Langenhoff, Alette A. M.; Gerritse, Jan. "Anaerobic benzene degradation under denitrifying conditions: Peptococcaceae as dominant benzene degraders and evidence for a syntrophic process". Environmental Microbiology 14 5 (2012): 1171-1181. http://dx.doi.org/10.1111/j.1462-2920.2012.02697.x.
    10.1111/j.1462-2920.2012.02697.x
  118. Jagersma, Christian G.; Meulepas, Roel J.W.; Timmers, Peer H.A.; Szperl, Agata; Lens, Piet N.L.; Stams, Alfons J.M.. "Enrichment of ANME-1 from Eckernförde Bay sediment on thiosulfate, methane and short-chain fatty acids". Journal of Biotechnology 157 4 (2012): 482-489. http://dx.doi.org/10.1016/j.jbiotec.2011.10.012.
    10.1016/j.jbiotec.2011.10.012
  119. van Gelder, Antonie H.; Aydin, R.; Alves, M. M.; Stams, Alfons Johannes Maria. "1,3-Propanediol production from glycerol by a newly isolated Trichococcus strain". (2012): http://hdl.handle.net/1822/23429.
    10.1111/j.1751-7915.2011.00318.x
  120. Stams, Alfons Johannes Maria; Sousa, D. Z.; Kleerebezem, Robbert; Plugge, Caroline M.. "Role of syntrophic microbial communities in high-rate methanogenic bioreactors". (2012): http://hdl.handle.net/1822/22282.
    10.2166/wst.2012.192
  121. Maphosa, Farai; Lieten, Shakti H.; Dinkla, Inez; Stams, Alfons J.; Smidt, Hauke; Fennell, Donna E.. "Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites". Frontiers in Microbiology 3 (2012): http://dx.doi.org/10.3389/fmicb.2012.00351.
    10.3389/fmicb.2012.00351
  122. Croese, Elsemiek; Pereira, Maria Alcina; Euverink, Gert-Jan W.; Stams, Alfons J. M.; Geelhoed, Jeanine S.. "Analysis of the microbial community of the biocathode of a hydrogen-producing microbial electrolysis cell". Applied Microbiology and Biotechnology 92 5 (2011): 1083-1093. http://dx.doi.org/10.1007/s00253-011-3583-x.
    10.1007/s00253-011-3583-x
  123. Lin’kova, Yu. V.; Dyakonova, A. T.; Gladchenko, M. A.; Kalyuzhnyi, S. V.; Kotova, I. B.; Stams, A.; Netrusov, A. I.. "Methanogenic degradation of (amino)aromatic compounds by anaerobic microbial communities". Applied Biochemistry and Microbiology 47 5 (2011): 507-514. http://dx.doi.org/10.1134/s0003683811050085.
    10.1134/s0003683811050085
  124. Rodríguez, Elisa; Lopes, Alexandre; Fdz.-Polanco, María; Stams, Alfons J. M.; García-Encina, Pedro A.. "Molecular analysis of the biomass of a fluidized bed reactor treating synthetic vinasse at anaerobic and micro-aerobic conditions". Applied Microbiology and Biotechnology 93 5 (2011): 2181-2191. http://dx.doi.org/10.1007/s00253-011-3529-3.
    10.1007/s00253-011-3529-3
  125. Oosterkamp, M. J.; Veuskens, T.; Plugge, C. M.; Langenhoff, A. A. M.; Gerritse, J.; van Berkel, W. J. H.; Pieper, D. H.; et al. "Genome Sequences of Alicycliphilus denitrificans Strains BC and K601T". Journal of Bacteriology 193 18 (2011): 5028-5029. http://dx.doi.org/10.1128/jb.00365-11.
    10.1128/jb.00365-11
  126. Bahr, Melanie; Stams, Alfons J. M.; De la Rosa, Francisco; García-Encina, Pedro A.; Muñoz, Raul. "Assessing the influence of the carbon oxidation-reduction state on organic pollutant biodegradation in algal–bacterial photobioreactors". Applied Microbiology and Biotechnology 90 4 (2011): 1527-1536. http://dx.doi.org/10.1007/s00253-011-3204-8.
    10.1007/s00253-011-3204-8
  127. Worm, Petra; Fermoso, Fernando G.; Stams, Alfons J. M.; Lens, Piet N. L.; Plugge, Caroline M.. "Transcription of fdh and hyd in Syntrophobacter spp. and Methanospirillum spp. as a diagnostic tool for monitoring anaerobic sludge deprived of molybdenum, tungsten and selenium". Environmental Microbiology 13 5 (2011): 1228-1235. http://dx.doi.org/10.1111/j.1462-2920.2011.02423.x.
    10.1111/j.1462-2920.2011.02423.x
  128. Oosterkamp, Margreet J.; Mehboob, Farrakh; Schraa, Gosse; Plugge, Caroline M.; Stams, Alfons J.M.. "Nitrate and (per)chlorate reduction pathways in (per)chlorate-reducing bacteria". Biochemical Society Transactions 39 1 (2011): 230-235. http://dx.doi.org/10.1042/bst0390230.
    10.1042/bst0390230
  129. Geelhoed, Jeanine S.; Stams, Alfons J. M.. "Electricity-Assisted Biological Hydrogen Production from Acetate by Geobacter sulfurreducens". Environmental Science & Technology 45 2 (2011): 815-820. http://dx.doi.org/10.1021/es102842p.
    10.1021/es102842p
  130. Worm, Petra; Stams, Alfons J. M.; Cheng, Xu; Plugge, Caroline M.. "Growth- and substrate-dependent transcription of formate dehydrogenase and hydrogenase coding genes in Syntrophobacter fumaroxidans and Methanospirillum hungatei". Microbiology 157 1 (2011): 280-289. http://dx.doi.org/10.1099/mic.0.043927-0.
    10.1099/mic.0.043927-0
  131. Bereschenko, L.A.; Prummel, H.; Euverink, G.J.W.; Stams, A.J.M.; van Loosdrecht, M.C.M.. "Effect of conventional chemical treatment on the microbial population in a biofouling layer of reverse osmosis systems". Water Research 45 2 (2011): 405-416. http://dx.doi.org/10.1016/j.watres.2010.07.058.
    10.1016/j.watres.2010.07.058
  132. Henstra, Anne M.; Stams, Alfons J. M.. "Deep Conversion of Carbon Monoxide to Hydrogen and Formation of Acetate by the Anaerobic Thermophile Carboxydothermus hydrogenoformans". International Journal of Microbiology 2011 (2011): 1-4. http://dx.doi.org/10.1155/2011/641582.
    10.1155/2011/641582
  133. Crable, Bryan R.; Plugge, Caroline M.; McInerney, Michael J.; Stams, Alfons J. M.. "Formate Formation and Formate Conversion in Biological Fuels Production". Enzyme Research 2011 (2011): 1-8. http://dx.doi.org/10.4061/2011/532536.
    10.4061/2011/532536
  134. Plugge, Caroline M.; Zhang, Weiwen; Scholten, Johannes C. M.; Stams, Alfons J. M.. "Metabolic Flexibility of Sulfate-Reducing Bacteria". Frontiers in Microbiology 2 (2011): http://dx.doi.org/10.3389/fmicb.2011.00081.
    10.3389/fmicb.2011.00081
  135. Michaelidou, Urania; ter Heijne, Annemiek; Euverink, Gerrit Jan W.; Hamelers, Hubertus V. M.; Stams, Alfons J. M.; Geelhoed, Jeanine S.. "Microbial Communities and Electrochemical Performance of Titanium-Based Anodic Electrodes in a Microbial Fuel Cell". Applied and Environmental Microbiology 77 3 (2010): 1069-1075. http://dx.doi.org/10.1128/aem.02912-09.
    10.1128/aem.02912-09
  136. Weelink, Sander A. B.; van Eekert, Miriam H. A.; Stams, Alfons J. M.. "Degradation of BTEX by anaerobic bacteria: physiology and application". Reviews in Environmental Science and Bio/Technology 9 4 (2010): 359-385. http://dx.doi.org/10.1007/s11157-010-9219-2.
    10.1007/s11157-010-9219-2
  137. Balk, Melike; Mehboob, Farrakh; van Gelder, Antonie H.; Rijpstra, W. Irene C.; Damsté, Jaap S. Sinninghe; Stams, Alfons J. M.. "(Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage". Applied Microbiology and Biotechnology 88 2 (2010): 595-603. http://dx.doi.org/10.1007/s00253-010-2788-8.
    10.1007/s00253-010-2788-8
  138. Verhaart, Marcel R.A.; Bielen, Abraham A.M.; Oost, John van der; Stams, Alfons J.M.; Kengen, Servé W.M.. "Hydrogen production by hyperthermophilic and extremely thermophilic bacteria and archaea: mechanisms for reductant disposal". Environmental Technology 31 8-9 (2010): 993-1003. http://dx.doi.org/10.1080/09593331003710244.
    10.1080/09593331003710244
  139. Geelhoed, Jeanine S; Hamelers, Hubertus VM; Stams, Alfons JM. "Electricity-mediated biological hydrogen production". Current Opinion in Microbiology 13 3 (2010): 307-315. http://dx.doi.org/10.1016/j.mib.2010.02.002.
    10.1016/j.mib.2010.02.002
  140. Meulepas, Roel J. W.; Jagersma, Christian G.; Khadem, Ahmad F.; Stams, Alfons J. M.; Lens, Piet N. L.. "Effect of methanogenic substrates on anaerobic oxidation of methane and sulfate reduction by an anaerobic methanotrophic enrichment". Applied Microbiology and Biotechnology 87 4 (2010): 1499-1506. http://dx.doi.org/10.1007/s00253-010-2597-0.
    10.1007/s00253-010-2597-0
  141. Meulepas, Roel J.W.; Jagersma, Christian G.; Zhang, Yu; Petrillo, Michele; Cai, Hengzhe; Buisman, Cees J.N.; Stams, Alfons J.M.; Lens, Piet N.L.. "Trace methane oxidation and the methane dependency of sulfate reduction in anaerobic granular sludge". FEMS Microbiology Ecology 72 2 (2010): 261-271. http://dx.doi.org/10.1111/j.1574-6941.2010.00849.x.
    10.1111/j.1574-6941.2010.00849.x
  142. Müller, Nicolai; Worm, Petra; Schink, Bernhard; Stams, Alfons J. M.; Plugge, Caroline M.. "Syntrophic butyrate and propionate oxidation processes: from genomes to reaction mechanisms". Environmental Microbiology Reports 2 4 (2010): 489-499. http://dx.doi.org/10.1111/j.1758-2229.2010.00147.x.
    10.1111/j.1758-2229.2010.00147.x
  143. Bereschenko, L. A.; Stams, A. J. M.; Euverink, G. J. W.; van Loosdrecht, M. C. M.. "Biofilm Formation on Reverse Osmosis Membranes Is Initiated and Dominated by Sphingomonas spp.". Applied and Environmental Microbiology 76 8 (2010): 2623-2632. http://dx.doi.org/10.1128/aem.01998-09.
    10.1128/aem.01998-09
  144. Meulepas, Roel J. W.; Stams, Alfons J. M.; Lens, Piet N. L.. "Biotechnological aspects of sulfate reduction with methane as electron donor". Reviews in Environmental Science and Bio/Technology 9 1 (2010): 59-78. http://dx.doi.org/10.1007/s11157-010-9193-8.
    10.1007/s11157-010-9193-8
  145. Geelhoed, Jeanine S.; Kleerebezem, Robbert; Sorokin, Dimitry Y.; Stams, Alfons J. M.; Van Loosdrecht, Mark C. M.. "Reduced inorganic sulfur oxidation supports autotrophic and mixotrophic growth of Magnetospirillum strain J10 and Magnetospirillum gryphiswaldense". Environmental Microbiology 12 4 (2010): 1031-1040. http://dx.doi.org/10.1111/j.1462-2920.2009.02148.x.
    10.1111/j.1462-2920.2009.02148.x
  146. Geelhoed, Jeanine S.; Kleerebezem, Robbert; Sorokin, Dimitry Y.; Stams, Alfons J. M.; Van Loosdrecht, Mark C. M.. "Microbial sulfide oxidation in the oxic-anoxic transition zone of freshwater sediment: involvement of lithoautotrophic Magnetospirillum strain J10". (2010):
    10.1111/j.1462-2920.2009.02148.x
  147. Parshina, Sofiya N.; Sipma, Jan; Henstra, Anne Meint; Stams, Alfons J. M.. "Carbon Monoxide as an Electron Donor for the Biological Reduction of Sulphate". International Journal of Microbiology 2010 (2010): 1-9. http://dx.doi.org/10.1155/2010/319527.
    10.1155/2010/319527
  148. Weelink, Sander A.B.; van Doesburg, Wim; Saia, Flávia Talarico; Rijpstra, W. Irene C.; Röling, Wilfred F.M.; Smidt, Hauke; Stams, Alfons J.M.. "A strictly anaerobic betaproteobacterium Georgfuchsia toluolicagen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor". FEMS Microbiology Ecology 70 3 (2009): 575-585. http://dx.doi.org/10.1111/j.1574-6941.2009.00778.x.
    10.1111/j.1574-6941.2009.00778.x
  149. Jagersma, G. Christian; Meulepas, Roel J. W.; Heikamp-de Jong, Ineke; Gieteling, Jarno; Klimiuk, Adam; Schouten, Stefan; Sinninghe Damsté, Jaap S.; Lens, Piet N. L.; Stams, Alfons J. M.. "Microbial diversity and community structure of a highly active anaerobic methane-oxidizing sulfate-reducing enrichment". Environmental Microbiology 11 12 (2009): 3223-3232. http://dx.doi.org/10.1111/j.1462-2920.2009.02036.x.
    10.1111/j.1462-2920.2009.02036.x
  150. Meulepas, Roel J.W.; Jagersma, Christian G.; Gieteling, Jarno; Buisman, Cees J.N.; Stams, Alfons J.M.; Lens, Piet N.L.. "Enrichment of anaerobic methanotrophs in sulfate-reducing membrane bioreactors". Biotechnology and Bioengineering 104 3 (2009): 458-470. http://dx.doi.org/10.1002/bit.22412.
    10.1002/bit.22412
  151. Meulepas, Roel J. W.; Jagersma, Christian G.; Khadem, Ahmad F.; Buisman, Cees J. N.; Stams, Alfons J. M.; Lens, Piet N. L.. "Effect of Environmental Conditions on Sulfate Reduction with Methane as Electron Donor by an Eckernfo¨rde Bay Enrichment". Environmental Science & Technology 43 17 (2009): 6553-6559. http://dx.doi.org/10.1021/es900633c.
    10.1021/es900633c
  152. Weijers, Johan W.H.; Panoto, Elda; van Bleijswijk, Judith; Schouten, Stefan; Rijpstra, W. Irene C.; Balk, Melike; Stams, Alfons J. M.; Damsté, Jaap S. Sinninghe. "Constraints on the Biological Source(s) of the Orphan Branched Tetraether Membrane Lipids". Geomicrobiology Journal 26 6 (2009): 402-414. http://dx.doi.org/10.1080/01490450902937293.
    10.1080/01490450902937293
  153. Vecherskaya, Margarita; Dijkema, Cor; Saad, Hugo Ramírez; Stams, Alfons J. M.. "Microaerobic and anaerobic metabolism of aMethylocystis parvusstrain isolated from a denitrifying bioreactor". Environmental Microbiology Reports 1 5 (2009): 442-449. http://dx.doi.org/10.1111/j.1758-2229.2009.00069.x.
    10.1111/j.1758-2229.2009.00069.x
  154. Balk, Melike; Heilig, Hans G. H. J.; van Eekert, Miriam H. A.; Stams, Alfons J. M.; Rijpstra, Irene C.; Sinninghe-Damsté, Jaap S.; de Vos, Willem M.; Kengen, Servé W. M.. "Isolation and characterization of a new CO-utilizing strain, Thermoanaerobacter thermohydrosulfuricus subsp. carboxydovorans, isolated from a geothermal spring in Turkey". Extremophiles 13 6 (2009): 885-894. http://dx.doi.org/10.1007/s00792-009-0276-9.
    10.1007/s00792-009-0276-9
  155. Stams, Alfons J. M.; Plugge, Caroline M.. "Electron transfer in syntrophic communities of anaerobic bacteria and archaea". Nature Reviews Microbiology 7 8 (2009): 568-577. http://dx.doi.org/10.1038/nrmicro2166.
    10.1038/nrmicro2166
  156. Stams, Alfons J. M.; Huisman, Jacco; Garcia Encina, Pedro A.; Muyzer, Gerard. "Citric acid wastewater as electron donor for biological sulfate reduction". Applied Microbiology and Biotechnology 83 5 (2009): 957-963. http://dx.doi.org/10.1007/s00253-009-1995-7.
    10.1007/s00253-009-1995-7
  157. van Houten, Bernd H. G. W.; van Doesburg, Wim; Dijkman, Henk; Copini, Cris; Smidt, Hauke; Stams, Alfons J. M.. "Long-term performance and microbial community analysis of a full-scale synthesis gas fed reactor treating sulfate- and zinc-rich wastewater". Applied Microbiology and Biotechnology 84 3 (2009): 555-563. http://dx.doi.org/10.1007/s00253-009-2075-8.
    10.1007/s00253-009-2075-8
  158. Mehboob, Farrakh; Junca, Howard; Schraa, Gosse; Stams, Alfons J. M.. "Growth of Pseudomonas chloritidismutans AW-1T on n-alkanes with chlorate as electron acceptor". Applied Microbiology and Biotechnology 83 4 (2009): 739-747. http://dx.doi.org/10.1007/s00253-009-1985-9.
    10.1007/s00253-009-1985-9
  159. Sokolova, Tatyana G.; Henstra, Anne-Meint; Sipma, Jan; Parshina, Sofiya N.; Stams, Alfons J.M.; Lebedinsky, Alexander V.. "Diversity and ecophysiological features of thermophilic carboxydotrophic anaerobes". FEMS Microbiology Ecology 68 2 (2009): 131-141. http://dx.doi.org/10.1111/j.1574-6941.2009.00663.x.
    10.1111/j.1574-6941.2009.00663.x
  160. van Groenestijn, J.W.; Geelhoed, J.S.; Goorissen, H.P.; Meesters, K.P.M.; Stams, A.J.M.; Claassen, P.A.M.. "Performance and population analysis of a non-sterile trickle bed reactor inoculated with Caldicellulosiruptor saccharolyticus, a thermophilic hydrogen producer". Biotechnology and Bioengineering 102 5 (2009): 1361-1367. http://dx.doi.org/10.1002/bit.22185.
    10.1002/bit.22185
  161. Mehboob, Farrakh; Wolterink, Arthur F.M.; Vermeulen, Arjan J.; Jiang, Bo; Hagedoorn, Peter-Leon; Stams, Alfons J.M.; Kengen, Servé W.M.. "Purification and characterization of a chlorite dismutase from Pseudomonas chloritidismutans". FEMS Microbiology Letters 293 1 (2009): 115-121. http://dx.doi.org/10.1111/j.1574-6968.2009.01517.x.
    10.1111/j.1574-6968.2009.01517.x
  162. van Houten, B. H. G. W.; Meulepas, R. J. W.; van Doesburg, W.; Smidt, H.; Muyzer, G.; Stams, A. J. M.. "Desulfovibrio paquesii sp. nov., a hydrogenotrophic sulfate-reducing bacterium isolated from a synthesis-gas-fed bioreactor treating zinc- and sulfate-rich wastewater". INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 59 2 (2009): 229-233. http://dx.doi.org/10.1099/ijs.0.65616-0.
    10.1099/ijs.0.65616-0
  163. Janssen, Albert J.H.; Lens, Piet N.L.; Stams, Alfons J.M.; Plugge, Caroline M.; Sorokin, Dimitri Y.; Muyzer, Gerard; Dijkman, Henk; et al. "Application of bacteria involved in the biological sulfur cycle for paper mill effluent purification". Science of The Total Environment 407 4 (2009): 1333-1343. http://dx.doi.org/10.1016/j.scitotenv.2008.09.054.
    10.1016/j.scitotenv.2008.09.054
  164. Alves, M. M.; Pereira, M. A.; Sousa, D. Z.; Cavaleiro, A. J.; Picavet, M. A.; Smidt, Hauke; Stams, Alfons Johannes Maria. "Waste lipids to energy: how to optimize methane production from long-chain fatty acids (LCFA)". (2009): http://hdl.handle.net/1822/9653.
    10.1111/j.1751-7915.2009.00100.x
  165. Sousa, D. Z.; Alves, J. I.; Alves, M. M.; Smidt, Hauke; Stams, Alfons Johannes Maria. "Effect of sulfate on methanogenic communities that degrade unsaturated and saturated long-chain fatty acids (LCFA)". (2009): http://hdl.handle.net/1822/16637.
    10.1111/j.1462-2920.2008.01740.x
  166. Sousa, D. Z.; Smidt, Hauke; Alves, M. M.; Stams, Alfons Johannes Maria. "Ecophysiology of syntrophic communities that degrade saturated and unsaturated long-chain fatty acids". (2009): http://hdl.handle.net/1822/22135.
    10.1111/j.1574-6941.2009.00680.x
  167. van Leerdam, Robin C.; de Bok, Frank A.M.; Bonilla-Salinas, Monica; van Doesburg, Wim; Lomans, Bart P.; Lens, Piet N.L.; Stams, Alfons J.M.; Janssen, Albert J.H.. "Methanethiol degradation in anaerobic bioreactors at elevated pH (>8): Reactor performance and microbial community analysis". Bioresource Technology 99 18 (2008): 8967-8973. http://dx.doi.org/10.1016/j.biortech.2008.05.007.
    10.1016/j.biortech.2008.05.007
  168. Jiang, Bo; Henstra, Anne-Meint; Paulo, Paula L.; Balk, Melike; van Doesburg, Wim; Stams, Alfons J. M.. "Atypical one-carbon metabolism of an acetogenic and hydrogenogenic Moorella thermoacetica strain". Archives of Microbiology 191 2 (2008): 123-131. http://dx.doi.org/10.1007/s00203-008-0435-x.
    10.1007/s00203-008-0435-x
  169. Plugge, Caroline M.; Jiang, Bo; de Bok, Frank A. M.; Tsai, Chingling; Stams, Alfons J. M.. "Effect of tungsten and molybdenum on growth of a syntrophic coculture of Syntrophobacter fumaroxidans and Methanospirillum hungatei". Archives of Microbiology 191 1 (2008): 55-61. http://dx.doi.org/10.1007/s00203-008-0428-9.
    10.1007/s00203-008-0428-9
  170. Weelink, Sander A. B.; Tan, Nico C. G.; ten Broeke, Harm; van den Kieboom, Corn�; van Doesburg, Wim; Langenhoff, Alette A. M.; Gerritse, Jan; Junca, Howard; Stams, Alfons J. M.. "Isolation and Characterization of Alicycliphilus denitrificans Strain BC, Which Grows on Benzene with Chlorate as the Electron Acceptor". Applied and Environmental Microbiology 74 21 (2008): 6672-6681. http://dx.doi.org/10.1128/aem.00835-08.
    10.1128/aem.00835-08
  171. van de Werken, Harmen J. G.; Verhaart, Marcel R. A.; VanFossen, Amy L.; Willquist, Karin; Lewis, Derrick L.; Nichols, Jason D.; Goorissen, Heleen P.; et al. "Hydrogenomics of the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus". Applied and Environmental Microbiology 74 21 (2008): 6720-6729. http://dx.doi.org/10.1128/aem.00968-08.
    10.1128/aem.00968-08
  172. Dolfing, Jan; Jiang, Bo; Henstra, Anne M.; Stams, Alfons J. M.; Plugge, Caroline M.. "Syntrophic Growth on Formate: a New Microbial Niche in Anoxic Environments". Applied and Environmental Microbiology 74 19 (2008): 6126-6131. http://dx.doi.org/10.1128/aem.01428-08.
    10.1128/aem.01428-08
  173. Bereschenko, L. A.; Heilig, G. H. J.; Nederlof, M. M.; van Loosdrecht, M. C. M.; Stams, A. J. M.; Euverink, G. J. W.. "Molecular Characterization of the Bacterial Communities in the Different Compartments of a Full-Scale Reverse-Osmosis Water Purification Plant". Applied and Environmental Microbiology 74 17 (2008): 5297-5304. http://dx.doi.org/10.1128/aem.00387-08.
    10.1128/aem.00387-08
  174. Fischer, Anko; Herklotz, Ilka; Herrmann, Steffi; Thullner, Martin; Weelink, Sander A. B.; Stams, Alfons J. M.; Schlömann, Michael; Richnow, Hans-Hermann; Vogt, Carsten. "Combined Carbon and Hydrogen Isotope Fractionation Investigations for Elucidating Benzene Biodegradation Pathways". Environmental Science & Technology 42 12 (2008): 4356-4363. http://dx.doi.org/10.1021/es702468f.
    10.1021/es702468f
  175. Muyzer, Gerard; Stams, Alfons J. M.. "The ecology and biotechnology of sulphate-reducing bacteria". Nature Reviews Microbiology 6 6 (2008): 441-454. http://dx.doi.org/10.1038/nrmicro1892.
    10.1038/nrmicro1892
  176. Sorokin, D. Yu.; Tourova, T. P.; Henstra, A. M.; Stams, A. J. M.; Galinski, E. A.; Muyzer, G.. "Sulfidogenesis under extremely haloalkaline conditions by Desulfonatronospira thiodismutans gen. nov., sp. nov., and Desulfonatronospira delicata sp. nov. - a novel lineage of Deltaproteobacteria from hypersaline soda lakes". Microbiology 154 5 (2008): 1444-1453. http://dx.doi.org/10.1099/mic.0.2007/015628-0.
    10.1099/mic.0.2007/015628-0
  177. van Leerdam, Robin C.; Bonilla-Salinas, Monica; de Bok, Frank A.M.; Bruning, H.; Lens, Piet N.L.; Stams, Alfons J.M.; Janssen, Albert J.H.. "Anaerobic methanethiol degradation and methanogenic community analysis in an alkaline (pH 10) biological process for liquefied petroleum gas desulfurization". Biotechnology and Bioengineering 101 4 (2008): 691-701. http://dx.doi.org/10.1002/bit.21933.
    10.1002/bit.21933
  178. Dar, Shabir A.; Kleerebezem, Robbert; Stams, Alfons J. M.; Kuenen, J. Gijs; Muyzer, Gerard. "Competition and coexistence of sulfate-reducing bacteria, acetogens and methanogens in a lab-scale anaerobic bioreactor as affected by changing substrate to sulfate ratio". Applied Microbiology and Biotechnology 78 6 (2008): 1045-1055. http://dx.doi.org/10.1007/s00253-008-1391-8.
    10.1007/s00253-008-1391-8
  179. McInerney, Michael J.; Struchtemeyer, Christopher G.; Sieber, Jessica; Mouttaki, Housna; Stams, Alfons J. M.; Schink, Bernhard; Rohlin, Lars; Gunsalus, Robert P.. "Physiology, Ecology, Phylogeny, and Genomics of Microorganisms Capable of Syntrophic Metabolism". Annals of the New York Academy of Sciences 1125 1 (2008): 58-72. http://dx.doi.org/10.1196/annals.1419.005.
    10.1196/annals.1419.005
  180. Balk, M.; Altinbas, M.; Rijpstra, W. I. C.; Sinninghe Damste, J. S.; Stams, A. J. M.. "Desulfatirhabdium butyrativorans gen. nov., sp. nov., a butyrate-oxidizing, sulfate-reducing bacterium isolated from an anaerobic bioreactor". INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 58 1 (2008): 110-115. http://dx.doi.org/10.1099/ijs.0.65396-0.
    10.1099/ijs.0.65396-0
  181. Sousa, D. Z.; Pereira, M. A.; Alves, J. I.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Anaerobic microbial LCFA degradation in bioreactors". (2008): http://hdl.handle.net/1822/7761.
    10.2166/wst.2008.090
  182. Balk, Melike; van Gelder, Ton; Weelink, Sander A.; Stams, Alfons J. M.. "(Per)chlorate Reduction by the Thermophilic Bacterium Moorella perchloratireducens sp. nov., Isolated from Underground Gas Storage". Applied and Environmental Microbiology 74 2 (2007): 403-409. http://dx.doi.org/10.1128/aem.01743-07.
    10.1128/aem.01743-07
  183. Freeman, Stephanie A.; Sierra-Alvarez, Reyes; Altinbas, Mahmut; Hollingsworth, Jeremy; Stams, Alfons J. M.; Smidt, Hauke. "Molecular characterization of mesophilic and thermophilic sulfate reducing microbial communities in expanded granular sludge bed (EGSB) reactors". Biodegradation 19 2 (2007): 161-177. http://dx.doi.org/10.1007/s10532-007-9123-9.
    10.1007/s10532-007-9123-9
  184. Sousa, D. Z.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.; Smidt, Hauke. "Microbial communities involved in anaerobic degradation of unsaturated or saturated long-chain fatty acids". (2007): http://hdl.handle.net/1822/6312.
    10.1128/AEM.01723-06
  185. Sousa, D. Z.; Smidt, Hauke; Alves, M. M.; Stams, Alfons Johannes Maria. "Syntrophomonas zehnderi sp. nov., an anaerobe that degrades long-chain fatty acids in co-culture with Methanobacterium formicicum". (2007): http://hdl.handle.net/1822/6299.
    10.1099/ijs.0.64734-0
  186. Sousa, D. Z.; Pereira, M. A.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Molecular assessment of complex microbial communities degrading long chain fatty acids in methanogenic bioreactors". (2007): http://hdl.handle.net/1822/7404.
    10.1111/j.1574-6941.2007.00291.x
  187. Santos, André Bezerra dos; Madrid, Marta P. de; Bok, Frank A.M. de; Stams, Alfons J.M.; Van Lier, Jules Bernardus; Cervantes, Francisco Javier. "The contribution of fermentative bacteria and methanogenic archaea to azo dye reduction by a thermophilic anaerobic consortium". (2006): http://www.repositorio.ufc.br/handle/riufc/9942.
  188. Pereira, M. A.; Roest, K.; Stams, Alfons Johannes Maria; Mota, M.; Alves, M. M.; Akkermans, A. D. L.. "Molecular monitoring of microbial diversity in expanded granular sludge bed (EGSB) reactors treating oleic acid". (2002): http://hdl.handle.net/1822/1433.
    10.1016/S0168-6496(02)00267-2
Report
  1. de Vos, Willem M.; Smidt, Hauke; van der Oost, John; Stams, Fons; Kengen, Serve´. 2017. Microbiology Centennial Symposium 2017 : 'Exploring Microbes for the Quality of Life' : 18 -20 October 2017, Wageningen, The Netherlands : Book of Abstracts. http://dx.doi.org/10.18174/424506.
    10.18174/424506
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2014 European bio-energetics congress (EBEC 2014) European bio-energetics congress (EBEC 2014)
(Lisbon, Portugal)
2014 European Geosciences Union, General Assembly 2014 European Geosciences Union, General Assembly 2014
(Vienna, Austria)
2014 The 3rd International Conferences of respiratory Sciences The 3rd International Conferences of Respiratory Sciences
(Bad Honnef, Germany)
2013/12/06 Key features of syntrophic methanogenic communities Microbiotech 2013
SPM/SPBT (Aveiro, Portugal)
2012 Gordon Conference: Molecular Basis of Microbial One-Carbon Metabolism Gordon Conference: Molecular Basis of Microbial One-Carbon Metabolism
(Lewiston, United States)
2011 Microbiological Society of Korea International Conference 2011 Microbiological Society of Korea International Conference 2011
(Gwangju, South Korea)
2011 10th Latin American Workshop and Symposium on Anaerobic Digestion 10th Latin American Workshop and Symposium on Anaerobic Digestion
(Ouro Preto)
2010/09 Bioenergy by methanogenesis andelectrogenesis by microbes 20th Annual Latin American Microbiology Congress
(Montevideo, Uruguay)
2010/03 Microbial degradation of aromatic and aliphatic hydrocarbons with chlorate as electron acceptor 1st Workshop on hydrocarbon degradation of the DFG Priority Programme 1319
(Machern, Leipzig, Germany)
2009/09/08 Green growth strategy for the ocean: Anaerobic methane oxidation and methane formation in marine environments GreenKorea 2009. Green growth and cooperation: Policy mix and industry
(Seoul, South Korea)
2009/09 Anaerobic microorganisms as water shift reaction catalysts for carbon monoxide conversion 3rd International Congress, Biotechniques for Air Pollution Control
(Delft, Netherlands)
2009/03 Sulfate reduction with methanol and other C1-compounds as electron donors EMBO-FEMS workshop on Microbial Sulfur Metabolism
(Tomar, Portugal)
2008/07 One carbon compounds in sulfur biotechnology Gordon Conference: Molecular Basis of Microbial One-Carbon Metabolism
(Lewiston, United States)
2008 Degradation of organic pollutants with chlorate as electron acceptor 3rd International Meeting on Environmental Biotechnology and Engineering
(Palma de Mallorca, Spain)
2007 Microbiology and application of biological sulfate reduction China-Germany Symposium on Microbes and the Environment
(Beijing, China)
2007 Anaerobic interspecies hydrogen transfer and/or hydrogen driven sulfate reduction Gordon Conference: Applied & Environmental Microbiology
(South Hadley, United States)
2006/01 Sulfate-independent metabolism of sulfate-reducing bacteria ESF Magellan Deep Biosphere Workshop
(Kartause Ittingen, Switzerland)
2005/10 Microbiology of methanogenic processes VIIIth Latin American Workshop on Anaerobic Digestion
IWA (Punta del Este, Uruguay)

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2000 - Current Up to now, Alfons Stams has supervised 45 PhD students, two of them obtained a cum laude degree. All his PhD students performed research in Environmental Microbiology and Environmental Biotechnology. The PhD projects were financed by external sources, except for three that were financed by Wageningen University. All PhD students that started under his supervision completed their work with a PhD degree, except for one.
Supervisor
2014 - 2018 Microbial interactions in the transformation of long-chain fatty acids in anaerobic reactors
Co-supervisor
Bioengenharia (PhD)
Universidade do Minho, Portugal
2003 - 2007 Ecology and physiology of anaerobic microbial communities that degrade long chain fatty acids
Co-supervisor
Engenharia Química e Biológica (PhD)
Universidade do Minho, Portugal
Distinctions

Other distinction

2006 TOP subsidy of the Chemical Science division of the Netherlands Science Foundation (NWO)
Nederlandse Organisatie voor Wetenschappelijk Onderzoek, Netherlands
2000 Awarded personal title professorship for achievements in anaerobic microbiology
Wageningen Universiteit Laboratorium voor Microbiologie, Netherlands
1987 Junior fellow of the Royal Netherlands Academy of Sciences (KNAW)
Koninklijke Nederlandse Academie van Wetenschappen, Netherlands