Conference abstract |
- van Vliet, Daan M.; von Meijenfeldt, F. A. Bastiaan; Versteeg, Sebastiaan; den Breems, Robert; Dutilh, Bas; Villanueva, Laura;
Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Novel sulfate- and sulfur-reducing bacteria from the Black Sea: metagenomics,
enrichment and isolation". 2019.
- Fischer, Peter; Stams, Alfons Johannes Maria; Villanueva, Laura; Sousa, Diana Zita Machado. "Enrichment and characterization
of microorganisms capable of degrading various C1 compounds in the Black Sea". 2019.
- Alves, M. M.; Braga, Cátia Sofia Neves; Martins, Gilberto; Salvador, Andreia Filipa Ferreira; Pereira, M. F. R.; Pereira,
Luciana; Soares, O. S. G. P.; et al. "Conductive materials affect methanogenic activity of pure cultures of methanogens and
syntrophic cocultures". 2019.
- Moreira, João Paulo Carvalho; Diender, Martijn; Arantes, Ana Luísa; Stams, Alfons Johannes Maria; Alves, M. M.; Alves, Joana
Isabel Ferreira; Sousa, Diana Zita Machado. "Production of propionate from carbon monoxide by a synthetic co-culture". 2019.
- Arantes, Ana Luísa; Moreira, João Paulo Carvalho; Diender, Martijn; Stams, Alfons Johannes Maria; Alves, M. M.; Alves, Joana
Isabel Ferreira; Sousa, Diana Zita Machado. "Acetobacterium sp. strain JM, a biotechnological platform organism for syngas
conversion". 2019.
- Ayudthaya, S. P. N.; Van De Weijer, Antonius H. P.; van Gelder, Antonie H.; Stams, Alfons Johannes Maria; De Vos, Willem M.;
Plugge, Caroline M.. "Organic acid production from starchy waste by rumen derived microbial communities". 2017.
- Duarte, Maria Salomé; Silva, Sérgio A.; Cavaleiro, Ana Júlia; Stams, Alfons Johannes Maria; Pereira, M. A.; Alves, M. M..
"Untangling the role of facultative bacteria in LCFA conversion to methane". 2017.
- Cavaleiro, Ana Júlia; Paulo, Ana M. S.; Salvador, Andreia F.; Alves, J. I.; Castro, Rita; Langenhoff, A. A. M.; Stams, Alfons
Johannes Maria; Pereira, M. A.; Alves, M. M.. "Facts and challenges on hydrocarbons bioremediation". 2017.
- Martins, Gilberto; Salvador, Andreia Filipa Ferreira; Melle-Franco, Manuel; Serpa, Ricardo; Stams, Alfons Johannes Maria;
Cavaleiro, Ana Júlia Viana; Pereira, M. A.; Alves, M. M.. "Effect of carbon nanotubes on methane production in pure cultures
of methanogens and in a syntrophic co-culture". 2017.
- Pereira, Ana Luísa; Alves, J. I.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Microbial diversity
of anaerobic syngas-converting enrichments from a multi-orifice baffled bioreactor (MOBB)". 2017.
- Van Vliet, D. M.; Stams, Alfons Johannes Maria; Villanueva, L.; Sánchez-Andrea, Irene. "Enrichment and isolation of novel
polysaccharidedegrading anaerobes from abyssal black sea sediment". 2017.
- Strepis, Nikolaos; Koehorst, Jasper; Naranjo, Henry Benavides; Schaap, Peter J.; Stams, Alfons Johannes Maria; Sousa, Diana
Zita Machado. "Trichococcus species as catalysts for biotechnological production of 1,3-propanediol". 2017.
- Mollaei, Monir; Sleutels, Tom H. J. A.; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Syntrophic cocultures of Geobacter
sulfurreducens and Syntrophobacter fumaroxidans growing on propionate and Fe (III) or a solid electrode as electron acceptors".
2017.
- Timmers, Peer H. A.; Vavourakis, C.; Muyzer, G.; Sorokin, D.; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Syntrophic
acetate oxidation at haloalkaline conditions". 2017.
- Diender, Martijn; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Microbial systems for conversion of syngas to
biobased products". 2017.
- Feng, Yuan; Stams, Alfons Johannes Maria; De Vos, Willem M.; Sánchez-Andrea, Irene. "Enrichment of sulfidogenic bacteria from
the human intestinal tract". 2017.
- Paulo, Ana Maria Silva; Salvador, Andreia Filipa Ferreira; Alves, Joana Isabel Ferreira; Castro, Rita; Alette Anna Maria Langenhoff;
Stams, Alfons Johannes Maria; Alves, M. M.; Cavaleiro, Ana Júlia. "Addition of co-substrates stimulates hexadecene conversion
to methane by an enriched microbial consortium". 2017.
- Salvador, Andreia F.; Martins, Gilberto; Melle-Franco, Manuel; Serpa, Ricardo; Stams, Alfons Johannes Maria; Cavaleiro, Ana
Júlia; Pereira, M. A.; et al. "Acceleration of methane production by carbon nanotubes". 2017.
- Cavaleiro, Ana Júlia; Ribeiro, J.; Guedes, Ana P.; Pereira, Ana Luísa Arantes Carvalho; Pereira, M. A.; Sousa, Diana Zita
Machado; Alves, M. M.; Stams, Alfons Johannes Maria. "Exploring syntrophic relationships in the anaerobic biodegradation of
lipids and long chain fatty acids". 2017.
- Pereira, Luciana; Salvador, Andreia F.; Martins, Gilberto; Cavaleiro, Ana Júlia; Pereira, M. A.; Stams, Alfons Johannes Maria;
Pereira, Manuel Fernando; Alves, M. M.. "Acceleration of anaerobic reactions by conductive carbon nanomaterials". 2017.
- Duarte, Maria Salomé; Silva, Sérgio A.; Cavaleiro, Ana Júlia Viana; Sousa, Diana Zita Machado; Ribeiro, Maria Alcina Carvalho
Ferreira; Stams, Alfons Johannes Maria; Alves, M. M.. "What is the role of Pseudomonas sp. in the anaerobic digestion of long-chain
fatty acids?". 2016.
- Cavaleiro, Ana Júlia; Salvador, Andreia Filipa Ferreira; Alves, Joana Isabel Ferreira; Langenhoff, Alette; Stams, Alfons Johannes
Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Unraveling who is who in methanogenic oil degradation". 2015.
- Pereira, Ana Luísa; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.. "Enrichment of carbon monoxide utilising microorganisms
from methanogenic bioreactor sludge". 2015.
- Guedes, Ana P.; Cavaleiro, A. J.; Silva, Sérgio Alves; Alves, M. M.; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado.
"Effect of sulfate and iron (III) on LCFA degradation by a methanogenic community". 2015.
- Ribeiro, J. A.; Cavaleiro, A. J.; Sousa, D. Z.; Alves, M. M.; Stams, Alfons Johannes Maria. "Characterization of an anaerobic
thermophilic glycerol-degrading enrichment culture". 2015.
- Salvador, A. F.; Cavaleiro, A. J.; Silva, Sérgio Alves; Guedes, Ana P.; Pereira, M. A.; Stams, Alfons Johannes Maria; Sousa,
Diana Zita Machado; Alves, M. M.. "Growth of sulfate reducing bacteria on the methanogenic inhibitor BES". 2015.
- Alves, J. I.; Salvador, A. F.; Langenhoff, A. A. M.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.; Cavaleiro,
A. J.. "Novel anaerobe obtained from a hexadecane-degrading consortium". 2015.
- Salvador, A. F.; Strepis, N.; Bize, A.; Stams, Alfons Johannes Maria; Schaap, Peter J.; Alves, M. M.; Bouchez, T.; Sousa,
D. Z.. "Proteomics of Syntrophomonas zehnderi and Methanobacterium formicicum growing on long-chain fatty acids". 2015.
- Cavaleiro, A. J.; Alves, J. I.; Salvador, A. F.; Paulo, A.; Castro, Rita; Mateus, C.; Stams, Alfons Johannes Maria; et al.
"Who is who in anaerobic oil biodegradation?". 2015.
- Cavaleiro, A. J.; Duarte, M. S.; Silva, Sérgio Alves; Salvador, A. F.; Guedes, Ana P.; Ribeiro, J. A.; Sousa, Diana Zita Machado;
et al. "Energy production from lipids by novel anaerobes". 2015.
- Sousa, D. Z.; van Gelder, Antonie H.; Pereira, M. A.; Salvador, A. F.; Sánchez-Andrea, I.; Strepis, N.; Jarzembowska, M.;
Alves, M. M.; Stams, Alfons Johannes Maria. "Prospecting fat-degrading anaerobes for biotechnology". 2014.
- Cavaleiro, Ana Júlia; Langenhoff, Alette; Smit, M. P. J.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado.
"Biodegradation of long chain alkanes and alkenes by enrichment cultures under methanogenic, sulfate-reducing and iron-reducing
conditions". 2014.
- Guedes, Ana P.; Cavaleiro, A. J.; Silva, Sérgio; Alves, M. M.; Stams, Alfons Johannes Maria; Sousa, D. Z.. "Addition of electron
acceptors stimulates methanogenesis from lipids by anaerobic sludge". 2013.
- Alves, J. I.; Alves, M. M.; Stams, Alfons Johannes Maria; Plugge, C. M.; Sousa, D. Z.. "Isolation and characterization of
two novel thermophilic anaerobic bacteria from syngas - and carbon monoxide - degrading cultures". 2012.
- Salvador, A. F.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.. "Microbial diversity and methanogen
survival in anaerobic communities degrading long-chain fatty acids". 2011.
- Sousa, D. Z.; Cavaleiro, A. J.; Stams, Alfons Johannes Maria; Alves, M. M.. "Anaerobic LCFA degradation: a role for non-syntrophic
conversions?". 2010.
- Croese, E.; Pereira, M. A.; Euverink, G.; Stams, Alfons Johannes Maria; Geelhoed, J.. "Hydrogen producing microbial communities
of the biocathode in a microbial electrolysis cell". 2010.
- Sousa, D. Z.; Alves, J. I.; Smidt, H.; Alves, M. M.; Stams, Alfons Johannes Maria. "Population dynamics of LCFA-degrading
syntrophic communities exposed to extended contact with sulfate". 2009.
- Sousa, D. Z.; Cavaleiro, A. J.; Pereira, M. A.; Alves, J. I.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Anaerobic
LCFA degradation: the role of syntrophic and non-syntrophic bacteria". 2009.
- Sousa, D. Z.; Cavaleiro, A. J.; Stams, Alfons Johannes Maria; Alves, M. M.. "Non-syntrophic oleate to palmitate conversion
in anaerobic bioreactors". 2009.
- Sousa, D. Z.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "The microbiology of conversion of long-chain fatty
acids (LCFA) to biogas". 2008.
- Alves, J. I.; Sousa, D. Z.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "The influence of sulfate on methanogenic
LCFA-degrading microbial communities". 2008.
- Sousa, D. Z.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Syntrophic LCFA-degraders: “bacteria that can clean
soap”". 2008.
- Sousa, D. Z.; Pereira, M. A.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.; Alves, J. I.. "Microbial consortia
involved in anaerobic degradation of unsaturated and saturated-LCFA show a different composition". 2006.
- Sousa, D. Z.; Pereira, M. A.; Altimbas, M.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Molecular monitoring
of bacterial and archaeal domains during the anaerobic mineralization of biomass-associated LCFA". 2004.
|
Journal article |
- Sousa, João A.B.; Bolgár, Andrea; Christel, Stephan; Dopson, Mark; Bijmans, Martijn F.M.; Stams, Alfons J.M.; Plugge, Caroline
M.. "Immobilization of sulfate and thiosulfate-reducing biomass on sand under haloalkaline conditions". Science of The
Total Environment 745 (2020): 141017. http://dx.doi.org/10.1016/j.scitotenv.2020.141017.
10.1016/j.scitotenv.2020.141017
- Plugge, Caroline M.; Sousa, João A. B.; Christel, Stephan; Dopson, Mark; Bijmans, Martijn F. M.; Stams, Alfons J. M.; Diender,
Martijn. "Syngas as Electron Donor for Sulfate and Thiosulfate Reducing Haloalkaliphilic Microorganisms in a Gas-Lift Bioreactor".
Microorganisms 8 9 (2020): 1451. http://dx.doi.org/10.3390/microorganisms8091451.
10.3390/microorganisms8091451
- van der Graaf, Charlotte M.; Sánchez-España, Javier; Yusta, Iñaki; Ilin, Andrey; Shetty, Sudarshan A.; Bale, Nicole J.; Villanueva,
Laura; Stams, Alfons J. M.; Sánchez-Andrea, Irene. "Biosulfidogenesis Mediates Natural Attenuation in Acidic Mine Pit Lakes".
Microorganisms 8 9 (2020): 1275. http://dx.doi.org/10.3390/microorganisms8091275.
10.3390/microorganisms8091275
- Paulo, Lara M.; Hidayat, Mohamad R.; Moretti, Giulio; Stams, Alfons J. M.; Sousa, Diana Z.. "Effect of nickel, cobalt, and
iron on methanogenesis from methanol and cometabolic conversion of 1,2-dichloroethene by
Methanosarcina barkeri". Biotechnology and Applied Biochemistry 67 5 (2020): 744-750. http://dx.doi.org/10.1002/bab.1925.
10.1002/bab.1925
- Ozuolmez, Derya; Moore, Elisha K.; Hopmans, Ellen C.; Sinninghe Damsté, Jaap S.; Stams, Alfons J. M.; Plugge, Caroline M..
"Butyrate Conversion by Sulfate-Reducing and Methanogenic Communities from Anoxic Sediments of Aarhus Bay, Denmark". Microorganisms
8 4 (2020): 606. http://dx.doi.org/10.3390/microorganisms8040606.
10.3390/microorganisms8040606
- de Vries, Hendrik J.; Stams, Alfons J.M.; Plugge, Caroline M.. "Biodiversity and ecology of microorganisms in high pressure
membrane filtration systems". Water Research 172 (2020): 115511. http://dx.doi.org/10.1016/j.watres.2020.115511.
10.1016/j.watres.2020.115511
- Ozuolmez, Derya; Stams, Alfons J. M.; Plugge, Caroline M.. "Propionate Converting Anaerobic Microbial Communities Enriched
from Distinct Biogeochemical Zones of Aarhus Bay, Denmark under Sulfidogenic and Methanogenic Conditions". Microorganisms
8 3 (2020): 394. http://dx.doi.org/10.3390/microorganisms8030394.
10.3390/microorganisms8030394
- Magalhães, Carla Pereira; Ribeiro, Joaquim A.; Guedes, Ana P.; Arantes, Ana L.; Sousa, Diana Z.; Stams, Alfons J. M.; Alves,
Maria M.; Cavaleiro, Ana Júlia. "Co-cultivation of Thermoanaerobacter strains with a methanogenic partner enhances glycerol
conversion". Microbial Biotechnology 13 4 (2020): 962-973. http://dx.doi.org/10.1111/1751-7915.13506.
10.1111/1751-7915.13506
- Arantes, Ana L.; Moreira, João P. C.; Diender, Martijn; Parshina, Sofiya N.; Stams, Alfons J. M.; Alves, M. Madalena; Alves,
Joana I.; Sousa, Diana Z.. "Enrichment of Anaerobic Syngas-Converting Communities and Isolation of a Novel Carboxydotrophic
Acetobacterium wieringae Strain JM". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.00058.
10.3389/fmicb.2020.00058
- Strepis, Nikolaos; Naranjo, Henry D.; Meier-Kolthoff, Jan; Göker, Markus; Shapiro, Nicole; Kyrpides, Nikos; Klenk, Hans-Peter;
et al. "Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species". (2020): http://hdl.handle.net/1822/63866.
10.1186/s12864-019-6410-x
- Duarte, Maria Salomé; Salvador, Andreia F.; Cavaleiro, A. J.; Stams, Alfons Johannes Maria; Pereira, M. A.; Alves, M. M..
"Multiple and flexible roles of facultative anaerobic bacteria in microaerophilic oleate degradation". (2020): http://hdl.handle.net/1822/67138.
10.1111/1462-2920.15124
- van Vliet, Daan M.; Lin, Yuemei; Bale, Nicole J.; Koenen, Michel; Villanueva, Laura; Stams, Alfons Johannes Maria; Sánchez-Andrea,
Irene. "Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., two marine anaerobes of the Pontiellaceae
fam. nov. producing sulfated glycosaminoglycan-like exopolymers". (2020): http://hdl.handle.net/1822/65698.
10.3390/microorganisms8060920
- Peng, Peng; Goris, Tobias; Lu, Yue; Nijsse, Bart; Burrichter, Anna; Schleheck, David; Koehorst, Jasper J.; et al. "Organohalide-respiring
Desulfoluna species isolated from marine environments". (2020): http://hdl.handle.net/1822/64144.
10.1038/s41396-019-0573-y
- Bui, Thi Phuong Nam; Schols, Henk A.; Jonathan, Melliana; Stams, Alfons J. M.; de Vos, Willem M.; Plugge, Caroline M.. "Mutual
Metabolic Interactions in Co-cultures of the Intestinal Anaerostipes rhamnosivorans With an Acetogen, Methanogen, or Pectin-Degrader
Affecting Butyrate Production". Frontiers in Microbiology 10 (2019): http://dx.doi.org/10.3389/fmicb.2019.02449.
10.3389/fmicb.2019.02449
- Parshina, Sofiya Nikolaevna; Strepis, Nikolaos; Aalvink, Steven; Nozhevnikova, Alla N.; Stams, Alfons J. M.; Sousa, Diana
Z.. "Trichococcus shcherbakoviae sp. nov., isolated from a laboratory-scale anaerobic EGSB bioreactor operated at low temperature".
International Journal of Systematic and Evolutionary Microbiology 69 2 (2019): 529-534. http://dx.doi.org/10.1099/ijsem.0.003193.
10.1099/ijsem.0.003193
- Cantera, Sara; Sánchez-Andrea, Irene; Sadornil, Lidia J.; García-Encina, Pedro A.; Stams, Alfons J.M.; Muñoz, Raúl. "Novel
haloalkaliphilic methanotrophic bacteria: An attempt for enhancing methane bio-refinery". Journal of Environmental Management
231 (2019): 1091-1099. http://dx.doi.org/10.1016/j.jenvman.2018.11.017.
10.1016/j.jenvman.2018.11.017
- de Vries, Hendrik J.; Beyer, Florian; Jarzembowska, Monika; Lipinska, Joanna; van den Brink, Paula; Zwijnenburg, Arie; Timmers,
Peer H. A.; Stams, Alfons J. M.; Plugge, Caroline M.. "Isolation and characterization of Sphingomonadaceae from fouled membranes".
npj Biofilms and Microbiomes 5 1 (2019): http://dx.doi.org/10.1038/s41522-018-0074-1.
10.1038/s41522-018-0074-1
- Van Vliet, Daan M.; Ayudthaya, S. P. N.; Diop, Sally; Villanueva, Laura; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene.
"Anaerobic degradation of sulfated polysaccharides by two novel Kiritimatiellales strains isolated from Black Sea sediment".
(2019): http://hdl.handle.net/1822/59267.
10.3389/fmicb.2019.00253
- Florentino, Anna P.; Pereira, Inês A. C.; Boeren, Sjef; Born, Michael; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene.
"Insight into the sulfur metabolism of Desulfurella amilsii by differential proteomics". (2019): http://hdl.handle.net/1822/58397.
10.1111/1462-2920.14442
- Diender, Martijn; Parera Olm, Ivette; Gelderloos, Marten; Koehorst, Jasper J.; Schaap, Peter J.; Stams, Alfons Johannes Maria;
Sousa, Diana Zita Machado. "Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids
from syngas". (2019): http://hdl.handle.net/1822/62596.
10.1038/s41598-019-54445-y
- Salvador, Andreia F.; Cavaleiro, Ana Júlia; Paulo, Ana M. S.; Silva, Sérgio Alves; Guedes, Ana P.; Pereira, M. Alcina; Stams,
Alfons Johannes Maria; Sousa, Diana Zita Machado; Alves, M. M.. "Inhibition studies with 2-bromoethanesulfonate reveal a novel
syntrophic relationship in anaerobic oleate degradation". (2019): http://hdl.handle.net/1822/58400.
10.1128/AEM.01733-18
- Cantera, S.; Sánchez-Andrea, I.; Lebrero, R.; García-Encina, P.A.; Stams, Alfons J.M.; Muñoz, R.. "Multi-production of high
added market value metabolites from diluted methane emissions via methanotrophic extremophiles". Bioresource Technology
267 (2018): 401-407. http://dx.doi.org/10.1016/j.biortech.2018.07.057.
10.1016/j.biortech.2018.07.057
- Feng, Yuan; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene; De Vos, Willem M.. "Eubacterium maltosivorans sp. nov., a
novel human intestinal acetogenic and butyrogenic bacterium with a versatile metabolism". (2018): http://hdl.handle.net/1822/65554.
10.1099/ijsem.0.003028
- Sedano-Núñez, Vicente T.; Boeren, Sjef; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Comparative proteome analysis
of propionate degradation by Syntrophobacter fumaroxidans in pure culture and in coculture with methanogens". (2018): http://hdl.handle.net/1822/55077.
10.1111/1462-2920.14119
- Arantes, Ana L.; Alves, J. I.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Enrichment of syngas-converting
communities from a multi-orifice baffled bioreactor". (2018): http://hdl.handle.net/1822/55172.
10.1111/1751-7915.12864
- Sánchez-Andrea, Irene; Florentino, Anna Patrícya; Semerel, Jeltzlin; Strepis, Nikolaos; Sousa, Diana Zita Machado; Stams,
Alfons Johannes Maria. "Co-culture of a novel fermentative bacterium, Lucifera butyrica gen. nov. sp. nov., with the sulfur
reducer Desulfurella amilsii for enhanced sulfidogenesis". (2018): http://hdl.handle.net/1822/57478.
10.3389/fmicb.2018.03108
- Santos, Sidnei C.; Liebensteiner, Martin G.; van Gelder, Antonie H.; Dimitrov, Mauricio R.; Almeida, Paulo F.; Quintella,
Cristina M.; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Bacterial glycerol oxidation coupled to sulfate reduction
at neutral and acidic pH". (2018): http://hdl.handle.net/1822/54421.
10.2323/jgam.2017.02.009
- Sousa, Diana Zita Machado; Visser, Michael; van Gelder, Antonie H.; Boeren, Sjef; Pieterse, Mervin M.; Pinkse, Martijn W.
H.; Verhaert, Peter D. E. M.; et al. "The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading
pathways". (2018): http://hdl.handle.net/1822/51165.
10.1038/s41467-017-02518-9
- Paulo, Ana M. S.; Salvador, Andreia F.; Alves, J. I.; Castro, Rita; Langenhoff, A. A. M.; Stams, Alfons Johannes Maria; Cavaleiro,
A. J.. "Enhancement of methane production from 1-hexadecene by additional electron donors". (2018): http://hdl.handle.net/1822/55176.
10.1111/1751-7915.12886
- Atashgahi, Siavash; Hornung, Bastian; van der Waals, Marcelle J.; da Rocha, Ulisses Nunes; Hugenholtz, Floor; Nijsse, Bart;
Molenaar, Douwe; et al. "A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene
degradation pathways". (2018): http://hdl.handle.net/1822/61442.
10.1038/s41598-018-22617-x
- Timmers, Peer H. A.; Vavourakis, Charlotte D.; Kleerebezem, Robbert; Damste, Jaap S. Sinninghe; Muyzer, Gerard; Stams, Alfons
Johannes Maria; Sorokin, Dimitry Y.; Plugge, Caroline M.. "Metabolism and occurrence of methanogenic and sulfate-reducing
syntrophic acetate oxidizing communities in haloalkaline environments". (2018): http://hdl.handle.net/1822/57412.
10.3389/fmicb.2018.03039
- Atashgahi, Siavash; Liebensteiner, Martin G.; Janssen, Dick B.; Smidt, Hauke; Stams, Alfons Johannes Maria; Sipkema, Detmer.
"Microbial synthesis and transformation of inorganic and organic chlorine compounds". (2018): http://hdl.handle.net/1822/57477.
10.3389/fmicb.2018.03079
- Hidalgo, Catalina A; Nobu, Masaru K; Narihiro, Takashi; Tamaki, Hideyuki; Liu, Wen-Tso; Kamagata, Yoichi; Stams, Alfons Johannes
Maria; Imachi, Hiroyuki; Sousa, Diana Zita Machado. "Novel energy conservation strategies and behavior of Pelotomaculum schinkii
driving syntrophic propionate catabolism". (2018): http://hdl.handle.net/1822/57410.
10.1111/1462-2920.14388
- Diender, Martijn; Uhl, Philipp; Bitter, Johannes Hendrik; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "High rate
biomethanation of carbon monoxide rich gases via a thermophilic synthetic co-culture". (2018): http://hdl.handle.net/1822/51754.
10.1021/acssuschemeng.7b03601
- Palakawong Na Ayudthaya, Susakul; van de Weijer, Antonius H. P.; van Gelder, Antonie H.; Stams, Alfons Johannes Maria; de
Vos, Willem M.; Plugge, Caroline M.. "Organic acid production from potato starch waste fermentation by rumen microbial communities
from Dutch and Thai dairy cows". (2018): http://hdl.handle.net/1822/50458.
10.1186/s13068-018-1012-4
- Atashgahi, Siavash; Sánchez-Andrea, Irene; Heipieper, Hermann J.; van der Meer, Jan R.; Stams, Alfons Johannes Maria; Smidt,
Hauke. "Prospects for harnessing biocide resistance for bioremediation and detoxification". (2018): http://hdl.handle.net/1822/54808.
10.1126/science.aar3778
- Duarte, Maria Salomé; Silva, Sérgio A.; Salvador, Andreia F.; Cavaleiro, A. J.; Stams, Alfons Johannes Maria; Alves, M. M.;
Pereira, M. A.. "Insight into the role of facultative bacteria stimulated by micro-aeration in continuous bioreactors converting
LCFA to methane". (2018): http://hdl.handle.net/1822/55174.
10.1021/acs.est.8b00894
- Hageman, Simon P.W.; van der Weijden, Renata D.; Stams, Alfons J.M.; Buisman, Cees J.N.. "Bio-production of selenium nanoparticles
with diverse physical properties for recovery from water". International Journal of Mineral Processing 169 (2017):
7-15. http://dx.doi.org/10.1016/j.minpro.2017.09.018.
10.1016/j.minpro.2017.09.018
- Gagliano, M.C.; Ismail, S.B.; Stams, A.J.M.; Plugge, C.M.; Temmink, H.; Van Lier, J.B.. "Biofilm formation and granule properties
in anaerobic digestion at high salinity". Water Research 121 (2017): 61-71. http://dx.doi.org/10.1016/j.watres.2017.05.016.
10.1016/j.watres.2017.05.016
- Hageman, S.P.W.; van der Weijden, R.D.; Stams, A.J.M.; van Cappellen, P.; Buisman, C.J.N.. "Microbial selenium sulfide reduction
for selenium recovery from wastewater". Journal of Hazardous Materials 329 (2017): 110-119. http://dx.doi.org/10.1016/j.jhazmat.2016.12.061.
10.1016/j.jhazmat.2016.12.061
- Khadem, Ahmad F.; Azman, Samet; Plugge, Caroline M.; Zeeman, Grietje; van Lier, Jules B.; Stams, Alfons J.M.. "Effect of humic
acids on the activity of pure and mixed methanogenic cultures". Biomass and Bioenergy 99 (2017): 21-30. http://dx.doi.org/10.1016/j.biombioe.2017.02.012.
10.1016/j.biombioe.2017.02.012
- Feng, Yuan; Stams, Alfons J.M.; de Vos, Willem. M.; Sánchez-Andrea, Irene. "Enrichment of sulfidogenic bacteria from the human
intestinal tract". FEMS Microbiology Letters 364 4 (2017): http://dx.doi.org/10.1093/femsle/fnx028.
10.1093/femsle/fnx028
- Paulo, Ana M. S.; Aydin, Rozelin; Dimitrov, Mauricio R.; Vreeling, Harm; Cavaleiro, Ana Júlia; García-Encina, Pedro A.; Stams,
Alfons Johannes Maria; Plugge, Caroline M.. "Sodium lauryl ether sulfate (SLES) degradation by nitrate-reducing bacteria".
(2017): http://hdl.handle.net/1822/46727.
10.1007/s00253-017-8212-x
- Salvador, Andreia F.; Martins, Gilberto; Melle-Franco, Manuel; Serpa, Ricardo; Stams, Alfons Johannes Maria; Cavaleiro, Ana
Júlia; Pereira, M. Alcina; Alves, M. M.. "Carbon nanotubes accelerate methane production in pure cultures of methanogens and
in a syntrophic coculture". (2017): http://hdl.handle.net/1822/47659.
10.1111/1462-2920.13774
- Timmers, P. H. A.; Welte, C. U.; Koehorst, J. J.; Plugge, C. M.; Jetten, M. S. M.; Stams, Alfons Johannes Maria. "Reverse
methanogenesis and respiration in methanotrophic archaea". (2017): http://hdl.handle.net/1822/47121.
10.1155/2017/1654237
- Atashgahi, Siavash; Lu, Yue; Zheng, Ying; Saccenti, Edoardo; Suarez-Diez, Maria; Ramiro-Garcia, Javier; Eisenmann, Heinrich;
et al. "Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol".
(2017): http://hdl.handle.net/1822/46344.
10.1111/1462-2920.13531
- Sousa, João A. B.; Bijmans, Martijn F. M.; Stams, Alfons Johannes Maria; Plugge, Caroline M.. "Thiosulfate conversion to sulfide
by a haloalkaliphilic microbial community in a bioreactor fed with H2 gas". (2017): http://hdl.handle.net/1822/46273.
10.1021/acs.est.6b04497
- Paulo, Lara M.; Ramiro-Garcia, Javier; van Mourik, Simon; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Effect
of nickel and cobalt on methanogenic enrichment cultures and role of biogenic sulfide in metal toxicity attenuation". (2017):
http://hdl.handle.net/1822/46897.
10.3389/fmicb.2017.01341
- Florentino, Anna; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Genome sequence of Desulfurella amilsii strain TR1
and comparative genomics of Desulfurellaceae family". (2017): http://hdl.handle.net/1822/46348.
10.3389/fmicb.2017.00222
- Peng, P.; Zheng, Y.; Koehorst, J. J.; Schaap, Peter J.; Stams, Alfons Johannes Maria; Smidt, H.; Atashgahi, S.. "Concurrent
haloalkanoate degradation and chlorate reduction by Pseudomonas chloritidismutans AW-1T". (2017): http://hdl.handle.net/1822/52722.
10.1128/AEM.00325-17
- Timmers, Peer H. A.; Widjaja-Greefkes, H. C. Aura; Plugge, Caroline M.; Stams, Alfons Johannes Maria. "Evaluation and optimization
of PCR primers for selective and quantitative detection of marine ANME subclusters involved in sulfate-dependent anaerobic
methane oxidation". (2017): http://hdl.handle.net/1822/47423.
10.1007/s00253-017-8338-x
- Azman, Samet; Khadem, Ahmad F.; Plugge, Caroline M.; Stams, Alfons J. M.; Bec, Sabina; Zeeman, Grietje. "Effect of humic acid
on anaerobic digestion of cellulose and xylan in completely stirred tank reactors: inhibitory effect, mitigation of the inhibition
and the dynamics of the microbial communities.". Applied Microbiology and Biotechnology 101 2 (2017): 889-901. http://dx.doi.org/10.1007/s00253-016-8010-x.
10.1007/s00253-016-8010-x
- Beyer, Florian; Laurinonyte, Judita; Zwijnenburg, Arie; Stams, Alfons J. M.; Plugge, Caroline M.. "Membrane Fouling and Chemical
Cleaning in Three Full-Scale Reverse Osmosis Plants Producing Demineralized Water". Journal of Engineering 2017 (2017):
1-14. http://dx.doi.org/10.1155/2017/6356751.
10.1155/2017/6356751
- Palakawong N.A., Susakul; Pristaš, Peter; Hrehová, Ludmila; Javorský, Peter; Stams, Alfons J.M.; Plugge, Caroline M.. "Actinomyces
succiniciruminis sp. nov. and Actinomyces glycerinitolerans sp. nov., two novel organic acid-producing bacteria isolated from
rumen". Systematic and Applied Microbiology 39 7 (2016): 445-452. http://dx.doi.org/10.1016/j.syapm.2016.08.001.
10.1016/j.syapm.2016.08.001
- Sánchez-Andrea, Irene; Stams, Alfons J. M.; Weijma, Jan; Gonzalez Contreras, Paula; Dijkman, Henk; Rozendal, Rene A.; Johnson,
D. Barrie. "A case in support of implementing innovative bio-processes in the metal mining industry". FEMS Microbiology
Letters 363 11 (2016): fnw106. http://dx.doi.org/10.1093/femsle/fnw106.
10.1093/femsle/fnw106
- Jarzembowska, Monika; Sousa, Diana Z.; Beyer, Florian; Zwijnenburg, Arie; Plugge, Caroline M.; Stams, Alfons J. M.. "Lachnotalea
glycerini gen. nov., sp. nov., an anaerobe isolated from a nanofiltration unit treating anoxic groundwater". International
Journal of Systematic and Evolutionary Microbiology 66 2 (2016): 774-779. http://dx.doi.org/10.1099/ijsem.0.000791.
10.1099/ijsem.0.000791
- Diender, Martijn; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado. "Production of medium-chain fatty acids and higher
alcohols by a synthetic co-culture grown on carbon monoxide or syngas". (2016): http://hdl.handle.net/1822/41478.
10.1186/s13068-016-0495-0
- Visser, Michael; Pieterse, Mervin M.; Pinkse, Martijn W. H.; Nijsse, Bart; Verhaert, Peter D. E. M.; Vos, Willem M. de; Schaap,
Peter J.; Stams, Alfons Johannes Maria. "Unravelling the one-carbon metabolism of the acetogen Sporomusa strain An4 by genome
and proteome analysis". (2016): http://hdl.handle.net/1822/42680.
10.1111/1462-2920.12973
- Visser, Michael; Stams, Alfons Johannes Maria; Frutschi, Manon; Bernier-Latmani, Rizlan. "Phylogenetic comparison of Desulfotomaculum
species of subgroup 1a and description of Desulfotomaculum reducens sp. nov.". (2016): http://hdl.handle.net/1822/44654.
10.1099/ijsem.0.000786
- Liebensteiner, Martin G.; Oosterkamp, Margreet J.; Stams, Alfons Johannes Maria. "Microbial respiration with chlorine oxyanions:
diversity and physiological and biochemical properties of chlorate- and perchlorate-reducing microorganisms". (2016): http://hdl.handle.net/1822/41413.
10.1111/nyas.12806
- Silva, Sérgio Alves; Salvador, Andreia Filipa Ferreira; Cavaleiro, A. J.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves,
M. M.; Sousa, Diana Zita Machado. "Toxicity of long chain fatty acids towards acetate conversion by Methanosaeta concilii
and Methanosarcina mazei". (2016): http://hdl.handle.net/1822/42131.
10.1111/1751-7915.12365
- Diender, Martijn; Pereira, Ricardo A. G.; Wessels, Hans J. C. T.; Stams, Alfons Johannes Maria; Sousa, Diana Z. "Proteomic
analysis of the hydrogen and carbon monoxide metabolism of Methanothermobacter marburgensis". (2016): http://hdl.handle.net/1822/43295.
10.3389/fmicb.2016.01049
- Mehboob, Farrakh; Oosterkamp, Margreet J.; Koehorst, Jasper J.; Farrakh, Sumaira; Veuskens, Teun; Plugge, Caroline M.; Boeren,
Sjef; et al. "Genome and proteome analysis of Pseudomonas chloritidismutans AW-1T that grows on n-decane with chlorate or
oxygen as electron acceptor". (2016): http://hdl.handle.net/1822/42868.
10.1111/1462-2920.12880
- Alves, Joana Isabel Ferreira; Alves, M. M.; Plugge, Caroline M.; Stams, Alfons Johannes Maria; Sousa, Diana Zita Machado.
"Comparative analysis of carbon monoxide tolerance among Thermoanaerobacter species". (2016): http://hdl.handle.net/1822/42692.
10.3389/fmicb.2016.01330
- Strepis, Nikolaos; Sánchez-Andrea, Irene; van Gelder, Antonie H.; van Kruistum, Henri; Shapiro, Nicole; Kyrpides, Nikos; Göker,
Markus; et al. "Description of Trichococcus ilyis sp. nov. by combined physiological and in silico genome hybridization analyses".
(2016): http://hdl.handle.net/1822/47806.
10.1099/ijsem.0.001294
- Timmers, Peer H. A.; Suarez-Zuluaga, Diego A.; Rossem, Minke van; Diender, Martijn; Stams, Alfons Johannes Maria; Plugge,
Caroline M.. "Anaerobic oxidation of methane associated with sulfate reduction in a natural freshwater gas source". (2016):
http://hdl.handle.net/1822/41719.
10.1038/ismej.2015.213
- Cavaleiro, A. J.; Pereira, M. A.; Guedes, Ana P.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, Diana Zita Machado. "Conversion
of Cn-unsaturated into Cn-2-saturated LCFA can occur uncoupled from methanogenesis in anaerobic bioreactors". (2016): http://hdl.handle.net/1822/41407.
10.1021/acs.est.5b03204
- Florentino, Anna P.; Brienza, Claudio; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Desulfurella amilsii sp. nov.,
a novel acidotolerant sulfur-respiring bacterium isolated from acidic river sediments". (2016): http://hdl.handle.net/1822/43306.
10.1099/ijsem.0.000866
- Geelhoed, Jeanine S.; Henstra, Anne M.; Stams, Alfons J. M.. "Carboxydotrophic growth of Geobacter sulfurreducens". Applied
Microbiology and Biotechnology 100 2 (2015): 997-1007. http://dx.doi.org/10.1007/s00253-015-7033-z.
10.1007/s00253-015-7033-z
- Suarez-Zuluaga, Diego A.; Timmers, Peer H. A.; Plugge, Caroline M.; Stams, Alfons J. M.; Buisman, Cees J. N.; Weijma, Jan.
"Thiosulphate conversion in a methane and acetate fed membrane bioreactor". Environmental Science and Pollution Research
23 3 (2015): 2467-2478. http://dx.doi.org/10.1007/s11356-015-5344-3.
10.1007/s11356-015-5344-3
- Moore, Eli K.; Hopmans, Ellen C.; Rijpstra, W. Irene C.; Sánchez-Andrea, Irene; Villanueva, Laura; Wienk, Hans; Schoutsen,
Frans; Stams, Alfons J. M.; Sinninghe Damsté, Jaap S.. "Lysine and novel hydroxylysine lipids in soil bacteria: amino acid
membrane lipid response to temperature and pH in Pseudopedobacter saltans". Frontiers in Microbiology 6 (2015): http://dx.doi.org/10.3389/fmicb.2015.00637.
10.3389/fmicb.2015.00637
- Sousa, João A.B.; Plugge, Caroline M.; Stams, Alfons J.M.; Bijmans, Martijn F.M.. "Sulfate reduction in a hydrogen fed bioreactor
operated at haloalkaline conditions". Water Research 68 (2015): 67-76. http://dx.doi.org/10.1016/j.watres.2014.09.035.
10.1016/j.watres.2014.09.035
- Liebensteiner, Martin G.; Pinkse, Martijn W. H.; Nijsse, Bart; Verhaert, Peter D. E. M.; Tsesmetzis, Nicolas; Stams, Alfons
Johannes Maria; Lomans, Bart P.. "Perchlorate and chlorate reduction by the Crenarchaeon Aeropyrum pernix and two thermophilic
Firmicutes". (2015): http://hdl.handle.net/1822/38532.
10.1111/1758-2229.12335
- Timmers, Peer H. A.; Gieteling, Jarno; Widjaja-Greefkes, H. C. Aura; Plugge, C. M.; Stams, Alfons Johannes Maria; Lens, Piet
N. L.; Meulepas, Roel J. W.. "Growth of anaerobic methane-oxidizing archaea and sulfate reducing bacteria in a high pressure
membrane-capsule bioreactor". (2015): http://hdl.handle.net/1822/37170.
10.1128/AEM.03255-14
- Rodríguez, Elisa; García-Encina, Pedro A.; Stams, Alfons Johannes Maria; Maphosa, Farai; Sousa, D. Z.. "Meta-omics approaches
to understand and improve wastewater treatment systems". (2015): http://hdl.handle.net/1822/36844.
10.1007/s11157-015-9370-x
- Oosterkamp, Margreet J.; Boeren, Sjef; Atashgahi, Siavash; Plugge, Caroline M.; Schaap, Peter J.; Stams, Alfons Johannes Maria.
"Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC". (2015): http://hdl.handle.net/1822/41757.
10.1093/femsle/fnv080
- Pereira, Luciana; Mehboob, F.; Stams, Alfons Johannes Maria; Mota, M.; Rijnaarts, H. H. M.; Alves, M. M.. "Metallic nanoparticles:
microbial synthesis and unique properties for biotechnological applications, bioavailability and biotransformation". (2015):
http://hdl.handle.net/1822/37040.
10.3109/07388551.2013.819484
- Florentino, Anna P.; Weijma, Jan; Stams, Alfons Johannes Maria; Sánchez-Andrea, Irene. "Sulfur reduction in acid rock drainage
environments". (2015): http://hdl.handle.net/1822/37613.
10.1021/acs.est.5b03346
- Timmers, Peer H. A.; Widjaja-Greefkes, H. C. Aura; Ramiro-Garcia, Javier; Plugge, C. M.; Stams, Alfons Johannes Maria. "Growth
and activity of ANME clades with different sulfate and sulfide concentrations in presence of methane". (2015): http://hdl.handle.net/1822/37571.
10.3389/fmicb.2015.00988
- Sousa, João A. B.; Sorokin, Dimitry Y.; Bijmans, Martijn F. M.; Plugge, Caroline M.; Stams, Alfons Johannes Maria. "Ecology
and application of haloalkaliphilic anaerobic microbial communities". (2015): http://hdl.handle.net/1822/38070.
10.1007/s00253-015-6937-y
- Diender, Martijn; Stams, Alfons Johannes Maria; Sousa, D. Z.. "Pathways and bioenergetics of anaerobic carbon monoxide fermentation".
(2015): http://hdl.handle.net/1822/38535.
10.3389/fmicb.2015.01275
- Paulo, Lara M.; Stams, Alfons Johannes Maria; Sousa, D. Z.. "Methanogens, sulphate and heavy metals: a complex system". (2015):
http://hdl.handle.net/1822/38528.
10.1007/s11157-015-9387-1
- Kruse, Thomas; van de Pas, Bram A.; Atteia, Ariane; Krab, Klaas; Hagen, Wilfred R.; Goodwin, Lynne; Chain, Patrick; et al.
"Genomic, Proteomic, and Biochemical Analysis of the Organohalide Respiratory Pathway in Desulfitobacterium dehalogenans".
Journal of Bacteriology 197 5 (2014): 893-904. http://dx.doi.org/10.1128/jb.02370-14.
10.1128/jb.02370-14
- Sánchez-Andrea, Irene; Sanz, Jose Luis; Stams, Alfons J. M.. "Microbacter margulisiae gen. nov., sp. nov., a propionigenic
bacterium isolated from sediments of an acid rock drainage pond". International Journal of Systematic and Evolutionary
Microbiology 64 Pt_12 (2014): 3936-3942. http://dx.doi.org/10.1099/ijs.0.066241-0.
10.1099/ijs.0.066241-0
- Liebensteiner, M.G.; Stams, A.J.M.; Lomans, B.P.. "(Per)chlorate reduction at high temperature: Physiological study of Archaeoglobus
fulgidus and potential implications for novel souring mitigation strategies". International Biodeterioration & Biodegradation
96 (2014): 216-222. http://dx.doi.org/10.1016/j.ibiod.2014.07.019.
10.1016/j.ibiod.2014.07.019
- Sánchez-Andrea, Irene; Stams, Alfons J. M.; Hedrich, Sabrina; Nancucheo, Ivan; Johnson, D. Barrie. "Desulfosporosinus acididurans
sp. nov.: an acidophilic sulfate-reducing bacterium isolated from acidic sediments". Extremophiles 19 1 (2014): 39-47.
http://dx.doi.org/10.1007/s00792-014-0701-6.
10.1007/s00792-014-0701-6
- Beyer, Florian; Rietman, Bas M.; Zwijnenburg, Arie; van den Brink, Paula; Vrouwenvelder, Johannes S.; Jarzembowska, Monika;
Laurinonyte, Judita; Stams, Alfons J.M.; Plugge, Caroline M.. "Long-term performance and fouling analysis of full-scale direct
nanofiltration (NF) installations treating anoxic groundwater". Journal of Membrane Science 468 (2014): 339-348. http://dx.doi.org/10.1016/j.memsci.2014.06.004.
10.1016/j.memsci.2014.06.004
- Dalla Vecchia, Elena; Visser, Michael; Stams, Alfons J. M.; Bernier-Latmani, Rizlan. "Investigation of sporulation in the
Desulfotomaculum genus: a genomic comparison with the genera Bacillus and Clostridium". Environmental Microbiology Reports
6 6 (2014): 756-766. http://dx.doi.org/10.1111/1758-2229.12200.
Published • 10.1111/1758-2229.12200
- Dorer, Conrad; Vogt, Carsten; Kleinsteuber, Sabine; Stams, Alfons J. M.; Richnow, Hans-Hermann. "Compound-Specific Isotope
Analysis as a Tool To Characterize Biodegradation of Ethylbenzene". Environmental Science & Technology 48 16 (2014):
9122-9132. http://dx.doi.org/10.1021/es500282t.
10.1021/es500282t
- van Gelder, Antonie H.; Sousa, Diana Z.; Rijpstra, W. Irene C.; Damsté, Jaap S. Sinninghe; Stams, Alfons J. M.; Sánchez-Andrea,
Irene. "Ercella succinigenes gen. nov., sp. nov., an anaerobic succinate-producing bacterium". International Journal of
Systematic and Evolutionary Microbiology 64 Pt_7 (2014): 2449-2454. http://dx.doi.org/10.1099/ijs.0.058966-0.
10.1099/ijs.0.058966-0
- Griffioen, Jasper; van Wensem, Joke; Oomes, Justine L.M.; Barends, Frans; Breunese, Jaap; Bruining, Hans; Olsthoorn, Theo;
Stams, Alfons J.M.; van der Stoel, Almer E.C.. "A technical investigation on tools and concepts for sustainable management
of the subsurface in The Netherlands". Science of The Total Environment 485-486 (2014): 810-819. http://dx.doi.org/10.1016/j.scitotenv.2014.02.114.
10.1016/j.scitotenv.2014.02.114
- Croese, Elsemiek; Jeremiasse, Adriaan W.; Marshall, Ian P.G.; Spormann, Alfred M.; Euverink, Gert-Jan W.; Geelhoed, Jeanine
S.; Stams, Alfons J.M.; Plugge, Caroline M.. "Influence of setup and carbon source on the bacterial community of biocathodes
in microbial electrolysis cells". Enzyme and Microbial Technology 61-62 (2014): 67-75. http://dx.doi.org/10.1016/j.enzmictec.2014.04.019.
10.1016/j.enzmictec.2014.04.019
- Kuever, Jan; Visser, Michael; Loeffler, Claudia; Boll, Mathias; Worm, Petra; Sousa, D. Z.; Plugge, Caroline M.; et al. "Genome
analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium". (2014):
http://hdl.handle.net/1822/31575.
10.4056/sigs.5209235
- Visser, Michael; Parshina, Sofiya N.; Alves, Joana I.; Sousa, D. Z.; Pereira, Inês A. C.; Muyzer, Gerard; Kuever, Jan; et
al. "Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans
and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans". (2014): http://hdl.handle.net/1822/31833.
10.4056/sigs.4718645
- Silva, Sérgio; Cavaleiro, A. J.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.; Sousa, D. Z.. "Long-term acclimation
of anaerobic sludges for high-rate methanogenesis from LCFA". (2014): http://hdl.handle.net/1822/31886.
10.1016/j.biombioe.2014.05.012
- Worm, Petra; Koehorst, Jasper J.; Visser, Michael; Sedano-Núñez, Vicente T.; Schaap, Peter J.; Plugge, Caroline M.; Sousa,
D. Z.; Stams, Alfons Johannes Maria. "A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid
degrading communities". (2014): http://hdl.handle.net/1822/31430.
10.1016/j.bbabio.2014.06.005
- Liebensteiner, Martin G.; Tsesmetzis, N.; Stams, Alfons Johannes Maria; Lomans, Bart P.. "Microbial redox processes in deep
subsurface environments and the potential application of (per)chlorate in oil reservoirs". (2014): http://hdl.handle.net/1822/31447.
10.3389/fmicb.2014.00428
- Sánchez-Andrea, Irene; Sanz, Jose Luis; Bijmans, Martijn F. M.; Stams, Alfons Johannes Maria. "Sulfate reduction at low pH
to remediate acid mine drainage". (2014): http://hdl.handle.net/1822/31518.
10.1016/j.jhazmat.2013.12.032
- Spirito, Catherine M.; Richter, Hanno; Rabaey, Korneel; Stams, Alfons Johannes Maria; Angenent, Largus T.. "Chain elongation
in anaerobic reactor microbiomes to recover resources from waste". (2014): http://hdl.handle.net/1822/31904.
10.1016/j.copbio.2014.01.003
- Paulo, A.M.S.; Plugge, C.M.; García-Encina, P.A.; Stams, A.J.M.. "Anaerobic degradation of sodium dodecyl sulfate (SDS) by
denitrifying bacteria". International Biodeterioration & Biodegradation 84 (2013): 14-20. http://dx.doi.org/10.1016/j.ibiod.2013.05.027.
10.1016/j.ibiod.2013.05.027
- Croese, Elsemiek; Keesman, Karel J.; Widjaja-Greefkes, (Aura) H.C.A.; Geelhoed, Jeanine S.; Plugge, Caroline M.; Sleutels,
Tom H.J.A.; Stams, Alfons J.M.; Euverink, Gert-Jan W.. "Relating MEC population dynamics to anode performance from DGGE and
electrical data". Systematic and Applied Microbiology 36 6 (2013): 408-416. http://dx.doi.org/10.1016/j.syapm.2013.05.004.
10.1016/j.syapm.2013.05.004
- Oosterkamp, Margreet J.; Boeren, Sjef; Plugge, Caroline M.; Schaap, Peter J.; Stams, Alfons J. M.. "Metabolic response of
Alicycliphilus denitrificans
strain BC toward electron acceptor variation". PROTEOMICS 13 18-19 (2013): 2886-2894. http://dx.doi.org/10.1002/pmic.201200571.
10.1002/pmic.201200571
- Sánchez-Andrea, Irene; Stams, Alfons J. M.; Amils, Ricardo; Sanz, José Luis. "Enrichment and isolation of acidophilic sulfate-reducing
bacteria from Tinto River sediments". Environmental Microbiology Reports (2013): n/a-n/a. http://dx.doi.org/10.1111/1758-2229.12066.
10.1111/1758-2229.12066
- Bielen, Abraham A.M.; Verhaart, Marcel R.A.; VanFossen, Amy L.; Blumer-Schuette, Sara E.; Stams, Alfons J.M.; van der Oost,
John; Kelly, Robert M.; Kengen, Servé W.M.. "A thermophile under pressure: Transcriptional analysis of the response of Caldicellulosiruptor
saccharolyticus to different H2 partial pressures". International Journal of Hydrogen Energy 38 4 (2013): 1837-1849.
http://dx.doi.org/10.1016/j.ijhydene.2012.11.082.
10.1016/j.ijhydene.2012.11.082
- Sousa, D. Z.; Salvador, Andreia Filipa Ferreira; Ramos, Juliana; Guedes, Ana P.; Barbosa, Sónia; Stams, Alfons Johannes Maria;
Alves, M. M.; Pereira, M. A.. "Activity and viability of methanogens in anaerobic digestion of unsaturated and saturated long-chain
fatty acids". (2013): http://hdl.handle.net/1822/27460.
10.1128/AEM.00035-13
- Alves, J. I.; Stams, Alfons Johannes Maria; Plugge, Caroline M.; Alves, M. M.; Sousa, D. Z.. "Enrichment of anaerobic syngas-converting
bacteria from thermophilic bioreactor sludge". (2013): http://hdl.handle.net/1822/27737.
10.1111/1574-6941.12185
- Oosterkamp, Margreet J.; Veuskens, Teun; Talarico Saia, Flávia; Weelink, Sander A. B.; Goodwin, Lynne A.; Daligault, Hajnalka
E.; Bruce, David C.; et al. "Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601T".
(2013): http://hdl.handle.net/1822/44514.
10.1371/journal.pone.0066971
- Visser, Michael; Worm, Petra; Muyzer, Gerard; Pereira, Inês A. C.; Schaap, Peter J.; Plugge, Caroline M.; Kuever, Jan; et
al. "Genome analysis of Desulfotomaculum kuznetsovii strain 17T reveals a physiological similarity with Pelotomaculum thermopropionicum
SIT". (2013): http://hdl.handle.net/1822/25457.
- Liebensteiner, Martin G.; Pinkse, Martijn W. H.; Schaap, Peter J.; Stams, Alfons Johannes Maria; Lomans, Bart P.. "Archaeal
(per)chlorate reduction at high temperature: an interplay of biotic and abiotic reactions". (2013): http://hdl.handle.net/1822/27434.
10.1126/science.1233957
- Van Eerten-Jansen, Mieke C. A. A.; Veldhoen, Anna B.; Plugge, Caroline M.; Stams, Alfons J. M.; Buisman, Cees J. N.; Ter Heijne,
Annemiek. "Microbial Community Analysis of a Methane-Producing Biocathode in a Bioelectrochemical System". Archaea
2013 (2013): 1-12. http://dx.doi.org/10.1155/2013/481784.
10.1155/2013/481784
- Spring, Stefan; Visser, Michael; Lu, Megan; Copeland, Alex; Lapidus, Alla; Lucas, Susan; Cheng, Jan-Fang; et al. "Complete
genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)". Standards in Genomic Sciences
7 2 (2012): 294-309. http://dx.doi.org/10.4056/sigs.3226659.
10.4056/sigs.3226659
- Regueiro, Leticia; Veiga, Patricia; Figueroa, Mónica; Alonso-Gutierrez, Jorge; Stams, Alfons J.M.; Lema, Juan M.; Carballa,
Marta. "Relationship between microbial activity and microbial community structure in six full-scale anaerobic digesters".
Microbiological Research 167 10 (2012): 581-589. http://dx.doi.org/10.1016/j.micres.2012.06.002.
10.1016/j.micres.2012.06.002
- Walter, S.; Laukenmann, S.; Stams, A. J. M.; Vollmer, M. K.; Gleixner, G.; Röckmann, T.. "The stable isotopic signature of
biologically produced molecular hydrogen (H-2)". Biogeosciences 9 10 (2012): 4115-4123. http://dx.doi.org/10.5194/bg-9-4115-2012.
10.5194/bg-9-4115-2012
- Plugge, Caroline M.; Henstra, Anne M.; Worm, Petra; Swarts, Daan C.; Paulitsch-Fuchs, Astrid H.; Scholten, Johannes C.M.;
Lykidis, Athanasios; et al. "Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOBT)". Standards in Genomic
Sciences 7 1 (2012): 91-106. http://dx.doi.org/10.4056/sigs.2996379.
10.4056/sigs.2996379
- Klok, Johannes B. M.; van den Bosch, Pim L. F.; Buisman, Cees J. N.; Stams, Alfons J. M.; Keesman, Karel J.; Janssen, Albert
J. H.. "Pathways of Sulfide Oxidation by Haloalkaliphilic Bacteria in Limited-Oxygen Gas Lift Bioreactors". Environmental
Science & Technology 46 14 (2012): 7581-7586. http://dx.doi.org/10.1021/es301480z.
10.1021/es301480z
- Khan, M Tanweer; Duncan, Sylvia H; Stams, Alfons J M; van Dijl, Jan Maarten; Flint, Harry J; Harmsen, Hermie J M. "The gut
anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic–anoxic interphases". The ISME
Journal 6 8 (2012): 1578-1585. http://dx.doi.org/10.1038/ismej.2012.5.
10.1038/ismej.2012.5
- van der Zaan, Bas M.; Saia, Flávia Talarico; Stams, Alfons J. M.; Plugge, Caroline M.; de Vos, Willem M.; Smidt, Hauke; Langenhoff,
Alette A. M.; Gerritse, Jan. "Anaerobic benzene degradation under denitrifying conditions: Peptococcaceae as dominant benzene
degraders and evidence for a syntrophic process". Environmental Microbiology 14 5 (2012): 1171-1181. http://dx.doi.org/10.1111/j.1462-2920.2012.02697.x.
10.1111/j.1462-2920.2012.02697.x
- Jagersma, Christian G.; Meulepas, Roel J.W.; Timmers, Peer H.A.; Szperl, Agata; Lens, Piet N.L.; Stams, Alfons J.M.. "Enrichment
of ANME-1 from Eckernförde Bay sediment on thiosulfate, methane and short-chain fatty acids". Journal of Biotechnology
157 4 (2012): 482-489. http://dx.doi.org/10.1016/j.jbiotec.2011.10.012.
10.1016/j.jbiotec.2011.10.012
- van Gelder, Antonie H.; Aydin, R.; Alves, M. M.; Stams, Alfons Johannes Maria. "1,3-Propanediol production from glycerol by
a newly isolated Trichococcus strain". (2012): http://hdl.handle.net/1822/23429.
10.1111/j.1751-7915.2011.00318.x
- Stams, Alfons Johannes Maria; Sousa, D. Z.; Kleerebezem, Robbert; Plugge, Caroline M.. "Role of syntrophic microbial communities
in high-rate methanogenic bioreactors". (2012): http://hdl.handle.net/1822/22282.
10.2166/wst.2012.192
- Maphosa, Farai; Lieten, Shakti H.; Dinkla, Inez; Stams, Alfons J.; Smidt, Hauke; Fennell, Donna E.. "Ecogenomics of microbial
communities in bioremediation of chlorinated contaminated sites". Frontiers in Microbiology 3 (2012): http://dx.doi.org/10.3389/fmicb.2012.00351.
10.3389/fmicb.2012.00351
- Croese, Elsemiek; Pereira, Maria Alcina; Euverink, Gert-Jan W.; Stams, Alfons J. M.; Geelhoed, Jeanine S.. "Analysis of the
microbial community of the biocathode of a hydrogen-producing microbial electrolysis cell". Applied Microbiology and Biotechnology
92 5 (2011): 1083-1093. http://dx.doi.org/10.1007/s00253-011-3583-x.
10.1007/s00253-011-3583-x
- Lin’kova, Yu. V.; Dyakonova, A. T.; Gladchenko, M. A.; Kalyuzhnyi, S. V.; Kotova, I. B.; Stams, A.; Netrusov, A. I.. "Methanogenic
degradation of (amino)aromatic compounds by anaerobic microbial communities". Applied Biochemistry and Microbiology
47 5 (2011): 507-514. http://dx.doi.org/10.1134/s0003683811050085.
10.1134/s0003683811050085
- Rodríguez, Elisa; Lopes, Alexandre; Fdz.-Polanco, María; Stams, Alfons J. M.; García-Encina, Pedro A.. "Molecular analysis
of the biomass of a fluidized bed reactor treating synthetic vinasse at anaerobic and micro-aerobic conditions". Applied
Microbiology and Biotechnology 93 5 (2011): 2181-2191. http://dx.doi.org/10.1007/s00253-011-3529-3.
10.1007/s00253-011-3529-3
- Oosterkamp, M. J.; Veuskens, T.; Plugge, C. M.; Langenhoff, A. A. M.; Gerritse, J.; van Berkel, W. J. H.; Pieper, D. H.; et
al. "Genome Sequences of Alicycliphilus denitrificans Strains BC and K601T". Journal of Bacteriology 193 18 (2011):
5028-5029. http://dx.doi.org/10.1128/jb.00365-11.
10.1128/jb.00365-11
- Bahr, Melanie; Stams, Alfons J. M.; De la Rosa, Francisco; García-Encina, Pedro A.; Muñoz, Raul. "Assessing the influence
of the carbon oxidation-reduction state on organic pollutant biodegradation in algal–bacterial photobioreactors". Applied
Microbiology and Biotechnology 90 4 (2011): 1527-1536. http://dx.doi.org/10.1007/s00253-011-3204-8.
10.1007/s00253-011-3204-8
- Worm, Petra; Fermoso, Fernando G.; Stams, Alfons J. M.; Lens, Piet N. L.; Plugge, Caroline M.. "Transcription of fdh and hyd
in Syntrophobacter spp. and Methanospirillum spp. as a diagnostic tool for monitoring anaerobic sludge deprived of molybdenum,
tungsten and selenium". Environmental Microbiology 13 5 (2011): 1228-1235. http://dx.doi.org/10.1111/j.1462-2920.2011.02423.x.
10.1111/j.1462-2920.2011.02423.x
- Oosterkamp, Margreet J.; Mehboob, Farrakh; Schraa, Gosse; Plugge, Caroline M.; Stams, Alfons J.M.. "Nitrate and (per)chlorate
reduction pathways in (per)chlorate-reducing bacteria". Biochemical Society Transactions 39 1 (2011): 230-235. http://dx.doi.org/10.1042/bst0390230.
10.1042/bst0390230
- Geelhoed, Jeanine S.; Stams, Alfons J. M.. "Electricity-Assisted Biological Hydrogen Production from Acetate by Geobacter
sulfurreducens". Environmental Science & Technology 45 2 (2011): 815-820. http://dx.doi.org/10.1021/es102842p.
10.1021/es102842p
- Worm, Petra; Stams, Alfons J. M.; Cheng, Xu; Plugge, Caroline M.. "Growth- and substrate-dependent transcription of formate
dehydrogenase and hydrogenase coding genes in Syntrophobacter fumaroxidans and Methanospirillum hungatei". Microbiology
157 1 (2011): 280-289. http://dx.doi.org/10.1099/mic.0.043927-0.
10.1099/mic.0.043927-0
- Bereschenko, L.A.; Prummel, H.; Euverink, G.J.W.; Stams, A.J.M.; van Loosdrecht, M.C.M.. "Effect of conventional chemical
treatment on the microbial population in a biofouling layer of reverse osmosis systems". Water Research 45 2 (2011):
405-416. http://dx.doi.org/10.1016/j.watres.2010.07.058.
10.1016/j.watres.2010.07.058
- Henstra, Anne M.; Stams, Alfons J. M.. "Deep Conversion of Carbon Monoxide to Hydrogen and Formation of Acetate by the Anaerobic
Thermophile Carboxydothermus hydrogenoformans". International Journal of Microbiology 2011 (2011): 1-4. http://dx.doi.org/10.1155/2011/641582.
10.1155/2011/641582
- Crable, Bryan R.; Plugge, Caroline M.; McInerney, Michael J.; Stams, Alfons J. M.. "Formate Formation and Formate Conversion
in Biological Fuels Production". Enzyme Research 2011 (2011): 1-8. http://dx.doi.org/10.4061/2011/532536.
10.4061/2011/532536
- Plugge, Caroline M.; Zhang, Weiwen; Scholten, Johannes C. M.; Stams, Alfons J. M.. "Metabolic Flexibility of Sulfate-Reducing
Bacteria". Frontiers in Microbiology 2 (2011): http://dx.doi.org/10.3389/fmicb.2011.00081.
10.3389/fmicb.2011.00081
- Michaelidou, Urania; ter Heijne, Annemiek; Euverink, Gerrit Jan W.; Hamelers, Hubertus V. M.; Stams, Alfons J. M.; Geelhoed,
Jeanine S.. "Microbial Communities and Electrochemical Performance of Titanium-Based Anodic Electrodes in a Microbial Fuel
Cell". Applied and Environmental Microbiology 77 3 (2010): 1069-1075. http://dx.doi.org/10.1128/aem.02912-09.
10.1128/aem.02912-09
- Weelink, Sander A. B.; van Eekert, Miriam H. A.; Stams, Alfons J. M.. "Degradation of BTEX by anaerobic bacteria: physiology
and application". Reviews in Environmental Science and Bio/Technology 9 4 (2010): 359-385. http://dx.doi.org/10.1007/s11157-010-9219-2.
10.1007/s11157-010-9219-2
- Balk, Melike; Mehboob, Farrakh; van Gelder, Antonie H.; Rijpstra, W. Irene C.; Damsté, Jaap S. Sinninghe; Stams, Alfons J.
M.. "(Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage". Applied
Microbiology and Biotechnology 88 2 (2010): 595-603. http://dx.doi.org/10.1007/s00253-010-2788-8.
10.1007/s00253-010-2788-8
- Verhaart, Marcel R.A.; Bielen, Abraham A.M.; Oost, John van der; Stams, Alfons J.M.; Kengen, Servé W.M.. "Hydrogen production
by hyperthermophilic and extremely thermophilic bacteria and archaea: mechanisms for reductant disposal". Environmental
Technology 31 8-9 (2010): 993-1003. http://dx.doi.org/10.1080/09593331003710244.
10.1080/09593331003710244
- Geelhoed, Jeanine S; Hamelers, Hubertus VM; Stams, Alfons JM. "Electricity-mediated biological hydrogen production". Current
Opinion in Microbiology 13 3 (2010): 307-315. http://dx.doi.org/10.1016/j.mib.2010.02.002.
10.1016/j.mib.2010.02.002
- Meulepas, Roel J. W.; Jagersma, Christian G.; Khadem, Ahmad F.; Stams, Alfons J. M.; Lens, Piet N. L.. "Effect of methanogenic
substrates on anaerobic oxidation of methane and sulfate reduction by an anaerobic methanotrophic enrichment". Applied
Microbiology and Biotechnology 87 4 (2010): 1499-1506. http://dx.doi.org/10.1007/s00253-010-2597-0.
10.1007/s00253-010-2597-0
- Meulepas, Roel J.W.; Jagersma, Christian G.; Zhang, Yu; Petrillo, Michele; Cai, Hengzhe; Buisman, Cees J.N.; Stams, Alfons
J.M.; Lens, Piet N.L.. "Trace methane oxidation and the methane dependency of sulfate reduction in anaerobic granular sludge".
FEMS Microbiology Ecology 72 2 (2010): 261-271. http://dx.doi.org/10.1111/j.1574-6941.2010.00849.x.
10.1111/j.1574-6941.2010.00849.x
- Müller, Nicolai; Worm, Petra; Schink, Bernhard; Stams, Alfons J. M.; Plugge, Caroline M.. "Syntrophic butyrate and propionate
oxidation processes: from genomes to reaction mechanisms". Environmental Microbiology Reports 2 4 (2010): 489-499.
http://dx.doi.org/10.1111/j.1758-2229.2010.00147.x.
10.1111/j.1758-2229.2010.00147.x
- Bereschenko, L. A.; Stams, A. J. M.; Euverink, G. J. W.; van Loosdrecht, M. C. M.. "Biofilm Formation on Reverse Osmosis Membranes
Is Initiated and Dominated by Sphingomonas spp.". Applied and Environmental Microbiology 76 8 (2010): 2623-2632. http://dx.doi.org/10.1128/aem.01998-09.
10.1128/aem.01998-09
- Meulepas, Roel J. W.; Stams, Alfons J. M.; Lens, Piet N. L.. "Biotechnological aspects of sulfate reduction with methane as
electron donor". Reviews in Environmental Science and Bio/Technology 9 1 (2010): 59-78. http://dx.doi.org/10.1007/s11157-010-9193-8.
10.1007/s11157-010-9193-8
- Geelhoed, Jeanine S.; Kleerebezem, Robbert; Sorokin, Dimitry Y.; Stams, Alfons J. M.; Van Loosdrecht, Mark C. M.. "Reduced
inorganic sulfur oxidation supports autotrophic and mixotrophic growth of Magnetospirillum strain J10 and Magnetospirillum
gryphiswaldense". Environmental Microbiology 12 4 (2010): 1031-1040. http://dx.doi.org/10.1111/j.1462-2920.2009.02148.x.
10.1111/j.1462-2920.2009.02148.x
- Geelhoed, Jeanine S.; Kleerebezem, Robbert; Sorokin, Dimitry Y.; Stams, Alfons J. M.; Van Loosdrecht, Mark C. M.. "Microbial
sulfide oxidation in the oxic-anoxic transition zone of freshwater sediment: involvement of lithoautotrophic Magnetospirillum
strain J10". (2010):
10.1111/j.1462-2920.2009.02148.x
- Parshina, Sofiya N.; Sipma, Jan; Henstra, Anne Meint; Stams, Alfons J. M.. "Carbon Monoxide as an Electron Donor for the Biological
Reduction of Sulphate". International Journal of Microbiology 2010 (2010): 1-9. http://dx.doi.org/10.1155/2010/319527.
10.1155/2010/319527
- Weelink, Sander A.B.; van Doesburg, Wim; Saia, Flávia Talarico; Rijpstra, W. Irene C.; Röling, Wilfred F.M.; Smidt, Hauke;
Stams, Alfons J.M.. "A strictly anaerobic betaproteobacterium Georgfuchsia toluolicagen. nov., sp. nov. degrades aromatic
compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor". FEMS Microbiology Ecology 70 3 (2009): 575-585.
http://dx.doi.org/10.1111/j.1574-6941.2009.00778.x.
10.1111/j.1574-6941.2009.00778.x
- Jagersma, G. Christian; Meulepas, Roel J. W.; Heikamp-de Jong, Ineke; Gieteling, Jarno; Klimiuk, Adam; Schouten, Stefan; Sinninghe
Damsté, Jaap S.; Lens, Piet N. L.; Stams, Alfons J. M.. "Microbial diversity and community structure of a highly active anaerobic
methane-oxidizing sulfate-reducing enrichment". Environmental Microbiology 11 12 (2009): 3223-3232. http://dx.doi.org/10.1111/j.1462-2920.2009.02036.x.
10.1111/j.1462-2920.2009.02036.x
- Meulepas, Roel J.W.; Jagersma, Christian G.; Gieteling, Jarno; Buisman, Cees J.N.; Stams, Alfons J.M.; Lens, Piet N.L.. "Enrichment
of anaerobic methanotrophs in sulfate-reducing membrane bioreactors". Biotechnology and Bioengineering 104 3 (2009):
458-470. http://dx.doi.org/10.1002/bit.22412.
10.1002/bit.22412
- Meulepas, Roel J. W.; Jagersma, Christian G.; Khadem, Ahmad F.; Buisman, Cees J. N.; Stams, Alfons J. M.; Lens, Piet N. L..
"Effect of Environmental Conditions on Sulfate Reduction with Methane as Electron Donor by an Eckernfo¨rde Bay Enrichment".
Environmental Science & Technology 43 17 (2009): 6553-6559. http://dx.doi.org/10.1021/es900633c.
10.1021/es900633c
- Weijers, Johan W.H.; Panoto, Elda; van Bleijswijk, Judith; Schouten, Stefan; Rijpstra, W. Irene C.; Balk, Melike; Stams, Alfons
J. M.; Damsté, Jaap S. Sinninghe. "Constraints on the Biological Source(s) of the Orphan Branched Tetraether Membrane Lipids".
Geomicrobiology Journal 26 6 (2009): 402-414. http://dx.doi.org/10.1080/01490450902937293.
10.1080/01490450902937293
- Vecherskaya, Margarita; Dijkema, Cor; Saad, Hugo Ramírez; Stams, Alfons J. M.. "Microaerobic and anaerobic metabolism of aMethylocystis
parvusstrain isolated from a denitrifying bioreactor". Environmental Microbiology Reports 1 5 (2009): 442-449. http://dx.doi.org/10.1111/j.1758-2229.2009.00069.x.
10.1111/j.1758-2229.2009.00069.x
- Balk, Melike; Heilig, Hans G. H. J.; van Eekert, Miriam H. A.; Stams, Alfons J. M.; Rijpstra, Irene C.; Sinninghe-Damsté,
Jaap S.; de Vos, Willem M.; Kengen, Servé W. M.. "Isolation and characterization of a new CO-utilizing strain, Thermoanaerobacter
thermohydrosulfuricus subsp. carboxydovorans, isolated from a geothermal spring in Turkey". Extremophiles 13 6 (2009):
885-894. http://dx.doi.org/10.1007/s00792-009-0276-9.
10.1007/s00792-009-0276-9
- Stams, Alfons J. M.; Plugge, Caroline M.. "Electron transfer in syntrophic communities of anaerobic bacteria and archaea".
Nature Reviews Microbiology 7 8 (2009): 568-577. http://dx.doi.org/10.1038/nrmicro2166.
10.1038/nrmicro2166
- Stams, Alfons J. M.; Huisman, Jacco; Garcia Encina, Pedro A.; Muyzer, Gerard. "Citric acid wastewater as electron donor for
biological sulfate reduction". Applied Microbiology and Biotechnology 83 5 (2009): 957-963. http://dx.doi.org/10.1007/s00253-009-1995-7.
10.1007/s00253-009-1995-7
- van Houten, Bernd H. G. W.; van Doesburg, Wim; Dijkman, Henk; Copini, Cris; Smidt, Hauke; Stams, Alfons J. M.. "Long-term
performance and microbial community analysis of a full-scale synthesis gas fed reactor treating sulfate- and zinc-rich wastewater".
Applied Microbiology and Biotechnology 84 3 (2009): 555-563. http://dx.doi.org/10.1007/s00253-009-2075-8.
10.1007/s00253-009-2075-8
- Mehboob, Farrakh; Junca, Howard; Schraa, Gosse; Stams, Alfons J. M.. "Growth of Pseudomonas chloritidismutans AW-1T on n-alkanes
with chlorate as electron acceptor". Applied Microbiology and Biotechnology 83 4 (2009): 739-747. http://dx.doi.org/10.1007/s00253-009-1985-9.
10.1007/s00253-009-1985-9
- Sokolova, Tatyana G.; Henstra, Anne-Meint; Sipma, Jan; Parshina, Sofiya N.; Stams, Alfons J.M.; Lebedinsky, Alexander V..
"Diversity and ecophysiological features of thermophilic carboxydotrophic anaerobes". FEMS Microbiology Ecology 68
2 (2009): 131-141. http://dx.doi.org/10.1111/j.1574-6941.2009.00663.x.
10.1111/j.1574-6941.2009.00663.x
- van Groenestijn, J.W.; Geelhoed, J.S.; Goorissen, H.P.; Meesters, K.P.M.; Stams, A.J.M.; Claassen, P.A.M.. "Performance and
population analysis of a non-sterile trickle bed reactor inoculated with Caldicellulosiruptor saccharolyticus, a thermophilic
hydrogen producer". Biotechnology and Bioengineering 102 5 (2009): 1361-1367. http://dx.doi.org/10.1002/bit.22185.
10.1002/bit.22185
- Mehboob, Farrakh; Wolterink, Arthur F.M.; Vermeulen, Arjan J.; Jiang, Bo; Hagedoorn, Peter-Leon; Stams, Alfons J.M.; Kengen,
Servé W.M.. "Purification and characterization of a chlorite dismutase from Pseudomonas chloritidismutans". FEMS Microbiology
Letters 293 1 (2009): 115-121. http://dx.doi.org/10.1111/j.1574-6968.2009.01517.x.
10.1111/j.1574-6968.2009.01517.x
- van Houten, B. H. G. W.; Meulepas, R. J. W.; van Doesburg, W.; Smidt, H.; Muyzer, G.; Stams, A. J. M.. "Desulfovibrio paquesii
sp. nov., a hydrogenotrophic sulfate-reducing bacterium isolated from a synthesis-gas-fed bioreactor treating zinc- and sulfate-rich
wastewater". INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 59 2 (2009): 229-233. http://dx.doi.org/10.1099/ijs.0.65616-0.
10.1099/ijs.0.65616-0
- Janssen, Albert J.H.; Lens, Piet N.L.; Stams, Alfons J.M.; Plugge, Caroline M.; Sorokin, Dimitri Y.; Muyzer, Gerard; Dijkman,
Henk; et al. "Application of bacteria involved in the biological sulfur cycle for paper mill effluent purification". Science
of The Total Environment 407 4 (2009): 1333-1343. http://dx.doi.org/10.1016/j.scitotenv.2008.09.054.
10.1016/j.scitotenv.2008.09.054
- Alves, M. M.; Pereira, M. A.; Sousa, D. Z.; Cavaleiro, A. J.; Picavet, M. A.; Smidt, Hauke; Stams, Alfons Johannes Maria.
"Waste lipids to energy: how to optimize methane production from long-chain fatty acids (LCFA)". (2009): http://hdl.handle.net/1822/9653.
10.1111/j.1751-7915.2009.00100.x
- Sousa, D. Z.; Alves, J. I.; Alves, M. M.; Smidt, Hauke; Stams, Alfons Johannes Maria. "Effect of sulfate on methanogenic communities
that degrade unsaturated and saturated long-chain fatty acids (LCFA)". (2009): http://hdl.handle.net/1822/16637.
10.1111/j.1462-2920.2008.01740.x
- Sousa, D. Z.; Smidt, Hauke; Alves, M. M.; Stams, Alfons Johannes Maria. "Ecophysiology of syntrophic communities that degrade
saturated and unsaturated long-chain fatty acids". (2009): http://hdl.handle.net/1822/22135.
10.1111/j.1574-6941.2009.00680.x
- van Leerdam, Robin C.; de Bok, Frank A.M.; Bonilla-Salinas, Monica; van Doesburg, Wim; Lomans, Bart P.; Lens, Piet N.L.; Stams,
Alfons J.M.; Janssen, Albert J.H.. "Methanethiol degradation in anaerobic bioreactors at elevated pH (>8): Reactor performance
and microbial community analysis". Bioresource Technology 99 18 (2008): 8967-8973. http://dx.doi.org/10.1016/j.biortech.2008.05.007.
10.1016/j.biortech.2008.05.007
- Jiang, Bo; Henstra, Anne-Meint; Paulo, Paula L.; Balk, Melike; van Doesburg, Wim; Stams, Alfons J. M.. "Atypical one-carbon
metabolism of an acetogenic and hydrogenogenic Moorella thermoacetica strain". Archives of Microbiology 191 2 (2008):
123-131. http://dx.doi.org/10.1007/s00203-008-0435-x.
10.1007/s00203-008-0435-x
- Plugge, Caroline M.; Jiang, Bo; de Bok, Frank A. M.; Tsai, Chingling; Stams, Alfons J. M.. "Effect of tungsten and molybdenum
on growth of a syntrophic coculture of Syntrophobacter fumaroxidans and Methanospirillum hungatei". Archives of Microbiology
191 1 (2008): 55-61. http://dx.doi.org/10.1007/s00203-008-0428-9.
10.1007/s00203-008-0428-9
- Weelink, Sander A. B.; Tan, Nico C. G.; ten Broeke, Harm; van den Kieboom, Corn�; van Doesburg, Wim; Langenhoff, Alette
A. M.; Gerritse, Jan; Junca, Howard; Stams, Alfons J. M.. "Isolation and Characterization of Alicycliphilus denitrificans
Strain BC, Which Grows on Benzene with Chlorate as the Electron Acceptor". Applied and Environmental Microbiology 74
21 (2008): 6672-6681. http://dx.doi.org/10.1128/aem.00835-08.
10.1128/aem.00835-08
- van de Werken, Harmen J. G.; Verhaart, Marcel R. A.; VanFossen, Amy L.; Willquist, Karin; Lewis, Derrick L.; Nichols, Jason
D.; Goorissen, Heleen P.; et al. "Hydrogenomics of the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus".
Applied and Environmental Microbiology 74 21 (2008): 6720-6729. http://dx.doi.org/10.1128/aem.00968-08.
10.1128/aem.00968-08
- Dolfing, Jan; Jiang, Bo; Henstra, Anne M.; Stams, Alfons J. M.; Plugge, Caroline M.. "Syntrophic Growth on Formate: a New
Microbial Niche in Anoxic Environments". Applied and Environmental Microbiology 74 19 (2008): 6126-6131. http://dx.doi.org/10.1128/aem.01428-08.
10.1128/aem.01428-08
- Bereschenko, L. A.; Heilig, G. H. J.; Nederlof, M. M.; van Loosdrecht, M. C. M.; Stams, A. J. M.; Euverink, G. J. W.. "Molecular
Characterization of the Bacterial Communities in the Different Compartments of a Full-Scale Reverse-Osmosis Water Purification
Plant". Applied and Environmental Microbiology 74 17 (2008): 5297-5304. http://dx.doi.org/10.1128/aem.00387-08.
10.1128/aem.00387-08
- Fischer, Anko; Herklotz, Ilka; Herrmann, Steffi; Thullner, Martin; Weelink, Sander A. B.; Stams, Alfons J. M.; Schlömann,
Michael; Richnow, Hans-Hermann; Vogt, Carsten. "Combined Carbon and Hydrogen Isotope Fractionation Investigations for Elucidating
Benzene Biodegradation Pathways". Environmental Science & Technology 42 12 (2008): 4356-4363. http://dx.doi.org/10.1021/es702468f.
10.1021/es702468f
- Muyzer, Gerard; Stams, Alfons J. M.. "The ecology and biotechnology of sulphate-reducing bacteria". Nature Reviews Microbiology
6 6 (2008): 441-454. http://dx.doi.org/10.1038/nrmicro1892.
10.1038/nrmicro1892
- Sorokin, D. Yu.; Tourova, T. P.; Henstra, A. M.; Stams, A. J. M.; Galinski, E. A.; Muyzer, G.. "Sulfidogenesis under extremely
haloalkaline conditions by Desulfonatronospira thiodismutans gen. nov., sp. nov., and Desulfonatronospira delicata sp. nov.
- a novel lineage of Deltaproteobacteria from hypersaline soda lakes". Microbiology 154 5 (2008): 1444-1453. http://dx.doi.org/10.1099/mic.0.2007/015628-0.
10.1099/mic.0.2007/015628-0
- van Leerdam, Robin C.; Bonilla-Salinas, Monica; de Bok, Frank A.M.; Bruning, H.; Lens, Piet N.L.; Stams, Alfons J.M.; Janssen,
Albert J.H.. "Anaerobic methanethiol degradation and methanogenic community analysis in an alkaline (pH 10) biological process
for liquefied petroleum gas desulfurization". Biotechnology and Bioengineering 101 4 (2008): 691-701. http://dx.doi.org/10.1002/bit.21933.
10.1002/bit.21933
- Dar, Shabir A.; Kleerebezem, Robbert; Stams, Alfons J. M.; Kuenen, J. Gijs; Muyzer, Gerard. "Competition and coexistence of
sulfate-reducing bacteria, acetogens and methanogens in a lab-scale anaerobic bioreactor as affected by changing substrate
to sulfate ratio". Applied Microbiology and Biotechnology 78 6 (2008): 1045-1055. http://dx.doi.org/10.1007/s00253-008-1391-8.
10.1007/s00253-008-1391-8
- McInerney, Michael J.; Struchtemeyer, Christopher G.; Sieber, Jessica; Mouttaki, Housna; Stams, Alfons J. M.; Schink, Bernhard;
Rohlin, Lars; Gunsalus, Robert P.. "Physiology, Ecology, Phylogeny, and Genomics of Microorganisms Capable of Syntrophic Metabolism".
Annals of the New York Academy of Sciences 1125 1 (2008): 58-72. http://dx.doi.org/10.1196/annals.1419.005.
10.1196/annals.1419.005
- Balk, M.; Altinbas, M.; Rijpstra, W. I. C.; Sinninghe Damste, J. S.; Stams, A. J. M.. "Desulfatirhabdium butyrativorans gen.
nov., sp. nov., a butyrate-oxidizing, sulfate-reducing bacterium isolated from an anaerobic bioreactor". INTERNATIONAL
JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 58 1 (2008): 110-115. http://dx.doi.org/10.1099/ijs.0.65396-0.
10.1099/ijs.0.65396-0
- Sousa, D. Z.; Pereira, M. A.; Alves, J. I.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Anaerobic microbial
LCFA degradation in bioreactors". (2008): http://hdl.handle.net/1822/7761.
10.2166/wst.2008.090
- Balk, Melike; van Gelder, Ton; Weelink, Sander A.; Stams, Alfons J. M.. "(Per)chlorate Reduction by the Thermophilic Bacterium
Moorella perchloratireducens sp. nov., Isolated from Underground Gas Storage". Applied and Environmental Microbiology
74 2 (2007): 403-409. http://dx.doi.org/10.1128/aem.01743-07.
10.1128/aem.01743-07
- Freeman, Stephanie A.; Sierra-Alvarez, Reyes; Altinbas, Mahmut; Hollingsworth, Jeremy; Stams, Alfons J. M.; Smidt, Hauke.
"Molecular characterization of mesophilic and thermophilic sulfate reducing microbial communities in expanded granular sludge
bed (EGSB) reactors". Biodegradation 19 2 (2007): 161-177. http://dx.doi.org/10.1007/s10532-007-9123-9.
10.1007/s10532-007-9123-9
- Sousa, D. Z.; Pereira, M. A.; Stams, Alfons Johannes Maria; Alves, M. M.; Smidt, Hauke. "Microbial communities involved in
anaerobic degradation of unsaturated or saturated long-chain fatty acids". (2007): http://hdl.handle.net/1822/6312.
10.1128/AEM.01723-06
- Sousa, D. Z.; Smidt, Hauke; Alves, M. M.; Stams, Alfons Johannes Maria. "Syntrophomonas zehnderi sp. nov., an anaerobe that
degrades long-chain fatty acids in co-culture with Methanobacterium formicicum". (2007): http://hdl.handle.net/1822/6299.
10.1099/ijs.0.64734-0
- Sousa, D. Z.; Pereira, M. A.; Smidt, Hauke; Stams, Alfons Johannes Maria; Alves, M. M.. "Molecular assessment of complex microbial
communities degrading long chain fatty acids in methanogenic bioreactors". (2007): http://hdl.handle.net/1822/7404.
10.1111/j.1574-6941.2007.00291.x
- Santos, André Bezerra dos; Madrid, Marta P. de; Bok, Frank A.M. de; Stams, Alfons J.M.; Van Lier, Jules Bernardus; Cervantes,
Francisco Javier. "The contribution of fermentative bacteria and methanogenic archaea to azo dye reduction by a thermophilic
anaerobic consortium". (2006): http://www.repositorio.ufc.br/handle/riufc/9942.
- Pereira, M. A.; Roest, K.; Stams, Alfons Johannes Maria; Mota, M.; Alves, M. M.; Akkermans, A. D. L.. "Molecular monitoring
of microbial diversity in expanded granular sludge bed (EGSB) reactors treating oleic acid". (2002): http://hdl.handle.net/1822/1433.
10.1016/S0168-6496(02)00267-2
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