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Identification

Personal identification

Full name
Raquel Linheiro

Citation names

  • Linheiro, Raquel

Author identifiers

Ciência ID
8711-0C39-124B

Languages

Language Speaking Reading Writing Listening Peer-review
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Beginner (A1) Beginner (A1) Beginner (A1) Beginner (A1)
Portuguese Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
2011/04
Concluded
 Biomolecular Science (Doutoramento)
The University of Manchester, United Kingdom
"COMPUTATIONAL ANALYSIS OF TRANSPOSABLE ELEMENT TARGET SITE PREFERENCES IN DROSOPHILA MELANOGASTER" (THESIS/DISSERTATION)
Projects

Grant

Designation Funders
2009/10/01 - 2012/09/30 BIOINFORMATICS ANALYSIS OF P ELEMENT INSERTIONS IN DROSOPHILA MELANOGASTER
SFRH/BD/60600/2009
 Fundação para a Ciência e a Tecnologia
Concluded

Contract

Designation Funders
2019/08/01 - 2021/04/30 De Novo based sequence assembly of next generation sequence data without chimeras: improved annotation, gene expression profiles and haplotype reconstruction
PTDC/BIA-EVL/29115/2017
Post-doc
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Concluded
2019/01/01 - 2019/12/31 Centre for Biotechnology and Fine Chemistry
UID/Multi/50016/2019
Universidade Católica Portuguesa, Portugal

Universidade Católica Portuguesa Portuguesa Centro de Biotecnologia e Química Fina, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Journal article
  1. Linheiro, Raquel; Sabatino, Stephen; Lobo, Diana; Archer, John. "CView: A network based tool for enhanced alignment visualization". PLOS ONE 17 6 (2022): e0259726. http://dx.doi.org/10.1371/journal.pone.0259726.
    10.1371/journal.pone.0259726
  2. Linheiro, Raquel; Archer, John. "Quantification of the effects of chimerism on read mapping, differential expression and annotation following short-read de novo assembly.". F1000Research 11 (2022): 120. http://dx.doi.org/10.12688/f1000research.108489.1.
    10.12688/f1000research.108489.1
  3. Catarina Ferreira; Diana Bogas; Santosh K. Bikarolla; Ana Rita Varela; Karolin Frykholm; Raquel Linheiro; Olga C. Nunes; Fredrik Westerlund; Célia M. Manaia. "Genetic variation in the conjugative plasmidome of a hospital effluent multidrug resistant Escherichia coli strain". (2019): https://hdl.handle.net/10216/123532.
    10.1016/j.chemosphere.2018.12.130
  4. Ferreira, Catarina; Bogas, Diana; Bikarolla, Santosh K.; Varela, Ana Rita; Frykholm, Karolin; Linheiro, Raquel; Nunes, Olga C.; Westerlund, Fredrik; Manaia, Célia M.. "Genetic variation in the conjugative plasmidome of a hospital effluent multidrug resistant Escherichia coli strain". (2019): http://hdl.handle.net/10400.14/26620.
    10.1016/j.chemosphere.2018.12.130
  5. Macieira, Ariana; Albano, Helena; Pinto, Miguel; Linheiro, Raquel; Barbosa, Joana; Teixeira, Paula. "Evaluation of a bacteriocinogenic Lactobacillus plantarum strain on the microbiological characteristics of “Alheira de Vitela”". (2019): http://hdl.handle.net/10400.14/28413.
    10.3934/agrfood.2019.2.223
  6. Nelson, Michael G.; Linheiro, Raquel S.; Bergman, Casey M.. "McClintock: an integrated pipeline for detecting transposable element insertions in whole-genome shotgun sequencing data". (2017): http://hdl.handle.net/10400.14/26009.
    10.1534/g3.117.043893

Other

Software
  1. Linheiro, Raquel; Sabatino, Stephen; Lobo, Diana; Archer, John. "CView". https://sourceforge.net/projects/cview/. Associação BIOPOLIS - Rede de Investigação em Biodiversidade e Biologia Evolutiva. 2022.