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Identification

Personal identification

Full name
Ann Mc Cartney

Citation names

  • Mc Cartney, Ann M.

Author identifiers

Ciência ID
801D-28DD-6DAC
ORCID iD
0000-0003-3191-3200
Education
Degree Classification
2012/09/01 - 2018/09/01
Concluded
 PhD. in Bioinformatics and Molecular Evolution (Doktor (PhD))
Dublin City University, Ireland
"The identification and characterization of RNA-Mediated Gene Fusions Across Great Apes." (THESIS/DISSERTATION)
2008/09/01 - 2012/11/01
Concluded
 BSc in Genetics and Cell Biology (Bachelor)
Major in Genetics and Cell Biology
Dublin City University, Ireland
"The Evolution, Genomic Structure and Regulation of the Imprintome" (THESIS/DISSERTATION)
Affiliation

Science

Category
Host institution 		Employer
2022/11/01 - 2024/11/01 Researcher (Research) University of California Santa Cruz, United States
2020/08/01 - 2022/10/31 Visiting Researcher (Research) National Human Genome Research Institute, United States
2018/08/01 - 2020/08/01 Postdoc (Research) Landcare Research New Zealand, New Zealand
Outputs

Publications

Journal article
  1. Mc Cartney, Ann M.; Shafin, Kishwar; Alonge, Michael; Bzikadze, Andrey V.; Formenti, Giulio; Fungtammasan, Arkarachai; Howe, Kerstin; et al. "Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies". Nature Methods 19 6 (2022): 687-695. http://dx.doi.org/10.1038/s41592-022-01440-3.
    10.1038/s41592-022-01440-3
  2. Mc Cartney, Ann M.; Shafin, Kishwar; Alonge, Michael; Bzikadze, Andrey V.; Formenti, Giulio; Fungtammasan, Arkarachai; Howe, Kerstin; et al. "Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies". Nature Methods 19 6 (2022): 687-695. http://dx.doi.org/10.1038/s41592-022-01440-3.
    10.1038/s41592-022-01440-3
  3. Mc Cartney, Ann M.; Anderson, Jane; Liggins, Libby; Hudson, Maui L.; Anderson, Matthew Z.; TeAika, Ben; Geary, Janis; et al. "Balancing openness with Indigenous data sovereignty: An opportunity to leave no one behind in the journey to sequence all of life". Proceedings of the National Academy of Sciences 119 4 (2022): http://dx.doi.org/10.1073/pnas.2115860119.
    10.1073/pnas.2115860119
  4. Ferreira, Rodrigo Lopes; Bernard, Enrico; da Cruz Júnior, Francisco William; Piló, Luis Beethoven; Calux, Allan; Souza-Silva, Marconi; Barlow, Jos; et al. "Brazilian cave heritage under siege". (2022): http://hdl.handle.net/10400.3/6457.
    10.1126/science.abo1973
  5. Formenti, Giulio; Theissinger, Kathrin; Fernandes, C; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; et al. "The era of reference genomes in conservation genomics". (2022): http://hdl.handle.net/10451/51119.
    10.1016/j.tree.2021.11.008
  6. Formenti, Giulio; Theissinger, Kathrin; Fernandes, Carlos; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; et al. "The era of reference genomes in conservation genomics". (2022): http://hdl.handle.net/10400.3/6447.
    10.1016/j.tree.2021.11.008
  7. Ann M. Mc Cartney; Medhat Mahmoud; Michael Jochum; Daniel Paiva Agustinho; Barry Zorman; Ahmad Al Khleifat; Fawaz Dabbaghie; et al. "An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates [version 2; peer review: 1 approved, 3 approved with reservations]". (2021): https://f1000research.com/articles/10-246/v2.
    10.12688/f1000research.51477.2
  8. Ann M. McCartney; Elena Hilario; Seung-Sub Choi; Joseph Guhlin; Jessica M. Prebble; Gary Houliston; Thomas R. Buckley; David Chagné. "An exploration of assembly strategies and quality metrics on the accuracy of the rewarewa ( Knightia excelsa ) genome". Molecular Ecology Resources (2021): https://doi.org/10.1111/1755-0998.13406.
    10.1111/1755-0998.13406
  9. Ann M. Mc Cartney; Medhat Mahmoud; Michael Jochum; Daniel Paiva Agustinho; Barry Zorman; Ahmad Al Khleifat; Fawaz Dabbaghie; et al. "An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates". F1000Research 10 (2021): 246-246. https://doi.org/10.12688/f1000research.51477.1.
    10.12688/f1000research.51477.1
Preprint
  1. Cartney, Ann Mc; Tsosie, K. S.; Sterner, B; Glass, J. R.; Paez, S; Geary, J; Hudson, Maui; Head, Mitchell A.. "Indigenous Peoples and Local Communities as partners in the sequencing of all eukaryotic life for the future of life". 2022. http://dx.doi.org/10.21203/rs.3.rs-2128776/v1.
    10.21203/rs.3.rs-2128776/v1
  2. Rhie, Arang; Nurk, Sergey; Cechova, Monika; Hoyt, Savannah J.; Taylor, Dylan J.; Altemose, Nicolas; Hook, Paul W.; et al. "The complete sequence of a human Y chromosome". 2022. http://dx.doi.org/10.1101/2022.12.01.518724.
    10.1101/2022.12.01.518724
  3. "Complete genomic and epigenetic maps of human centromeres". 2021. http://dx.doi.org/10.1101/2021.07.12.452052.
    10.1101/2021.07.12.452052
  4. "The complete sequence of a human genome". 2021. http://dx.doi.org/10.1101/2021.05.26.445798.
    10.1101/2021.05.26.445798

Other

Other output
  1. Genome sequence of Pseudopithomyces chartarum, causal agent of facial eczema (pithomycotoxicosis) in ruminants, and identification of the putative sporidesmin toxin gene cluster. 2021. Jaspreet Singh Sidhu; Vinod Suresh; Abdul Baten; Ann M. McCartney; Gavin Lear; Jan M. Sprosen; Mark H. Oliver; et al. https://doi.org/10.1101/2021.04.29.441555.
    10.1101/2021.04.29.441555
  2. An exploration of assembly strategies and quality metrics on the accuracy of the Knightia excelsa (rewarewa) genome.. 2021. Ann McCartney; Elena Hilario; Seung-Sub Choi; Joseph Guhlin; Jessie Prebble; Gary Houliston; Thomas Buckley; David Chagné. https://doi.org/10.22541/au.161048558.86691399/v1.
    10.22541/au.161048558.86691399/v1
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2022/12/19 Conference of the Parties on the Convention on Biological Diversity: Capacity Building in Genomics Conference of the Parties on the Convention on Biological Diversity
Convention on Biological Diversity (Montreal, Canada)

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2023/01/19 - Current Workshop on: Building sustained partnerships with Indigenous Peoples and Local Communities when sequencing global biodiversity. (2023/01/19)
Conference (Co-organisor)

Committee member

Activity description
Role 		Institution / Organization
2022/01/01 - Current Earth Biogenome Project's justice, equity, diversity and inclusion committee co-chair
Other
2021/04/01 - 2023/12/01 European Reference Genome Atlas Pilot Project
Director

Scientific expedition

Activity description Institution / Organization
2023/01/01 - Current Biocomplexity Survival Alliance Scientific Director
Distinctions

Award

2022 NHGRI Inaugural award for innovative DEI practices in the genomic workforce,
National Human Genome Research Institute, United States
2022 NIH Director Award
National Institutes of Health, United States
2022 NHGRI GREAT Award
National Human Genome Research Institute, United States