Journal article |
- Samar S. M. Elsheikh; Emile R. Chimusa; Nicola J. Mulder; Alessandro Crimi; Elsheikh, Samar S. M.; Chimusa, Emile R.; Mulder,
Nicola J.; Crimi, Alessandro. "Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer’s Disease". Scientific
Reports 10 1 (2020): https://doi.org/10.1038/s41598-020-58291-1.
10.1038/s41598-020-58291-1
- Nkya, Siana; Mwita, Liberata; Mgaya, Josephine; Kumburu, Happiness; van Zwetselaar, Marco; Menzel, Stephan; Mazandu, Gaston
Kuzamunu; et al. "Identifying genetic variants and pathways associated with extreme levels of fetal hemoglobin in sickle cell
disease in Tanzania". BMC Medical Genetics 21 1 (2020): http://dx.doi.org/10.1186/s12881-020-01059-1.
10.1186/s12881-020-01059-1
- Awany, Denis; Allali, Imane; Chimusa, Emile R. "Dissecting genome-wide studies for microbiome-related metabolic diseases".
Human Molecular Genetics 29 R1 (2020): R73-R80. http://dx.doi.org/10.1093/hmg/ddaa105.
10.1093/hmg/ddaa105
- Thomford, Nicholas Ekow; Bope, Christian Domilongo; Agamah, Francis Edem; Dzobo, Kevin; Owusu Ateko, Richmond; Chimusa, Emile;
Mazandu, Gaston Kuzamunu; et al. "Implementing Artificial Intelligence and Digital Health in Resource-Limited Settings? Top
10 Lessons We Learned in Congenital Heart Defects and Cardiology". OMICS: A Journal of Integrative Biology 24 5 (2020):
264-277. http://dx.doi.org/10.1089/omi.2019.0142.
10.1089/omi.2019.0142
- Edmond Wonkam Tingang; Jean Jacques Noubiap; Jean Valentin F. Fokouo; Oluwafemi Gabriel Oluwole; Séraphin Nguefack; Emile
R. Chimusa; Ambroise Wonkam; et al. "Hearing Impairment Overview in Africa: the Case of Cameroon". Genes 11 2 (2020):
233-233. https://doi.org/10.3390/genes11020233.
10.3390/genes11020233
- Alosaimi, Shatha; Bandiang, Armand; van Biljon, Noelle; Awany, Denis; Thami, Prisca K; Tchamga, Milaine S S; Kiran, Anmol;
et al. "A broad survey of DNA sequence data simulation tools". Briefings in Functional Genomics 19 1 (2019): 49-59.
http://dx.doi.org/10.1093/bfgp/elz033.
10.1093/bfgp/elz033
- Mary Mufford; Josh Cheung; Neda Jahanshad; Celia van der Merwe; Linda Ding; Nynke Groenewold; Nastassja Koen; et al. "Concordance
of genetic variation that increases risk for Tourette Syndrome and that influences its underlying neurocircuitry". Translational
Psychiatry 9 1 (2019): https://doi.org/10.1038/s41398-019-0452-3.
10.1038/s41398-019-0452-3
- Damena, Delesa; Chimusa, Emile R. "Genome-wide heritability analysis of severe malaria resistance reveals evidence of polygenic
inheritance". Human Molecular Genetics 29 1 (2019): 168-176. http://dx.doi.org/10.1093/hmg/ddz258.
10.1093/hmg/ddz258
- Tingang Wonkam, Edmond; Chimusa, Emile; Noubiap, Jean Jacques; Adadey, Samuel Mawuli; F. Fokouo, Jean Valentin; Wonkam, Ambroise.
"GJB2 and GJB6 Mutations in Hereditary Recessive Non-Syndromic Hearing Impairment in Cameroon". Genes 10 11 (2019):
844. http://dx.doi.org/10.3390/genes10110844.
10.3390/genes10110844
- Ephifania Geza; Jacquiline Mugo; Nicola J Mulder; Ambroise Wonkam; Emile R Chimusa; Gaston K Mazandu; Geza, Ephifania; et
al. "A comprehensive survey of models for dissecting local ancestry deconvolution in human genome". Briefings in Bioinformatics
20 5 (2019): 1709-1724. https://doi.org/10.1093/bib/bby044.
10.1093/bib/bby044
- Thami, Prisca K.; Chimusa, Emile R.. "Population Structure and Implications on the Genetic Architecture of HIV-1 Phenotypes
Within Southern Africa". Frontiers in Genetics 10 (2019): http://dx.doi.org/10.3389/fgene.2019.00905.
10.3389/fgene.2019.00905
- Mhandire, Doreen; Duri, Kerina; Kaba, Mamadou; Mhandire, Kudakwashe; Musarurwa, Cuthbert; Chimusa, Emile; Munjoma, Privilege;
et al. "Seroprevalence of Cytomegalovirus Infection Among HIV-Infected and HIV-Uninfected Pregnant Women Attending Antenatal
Clinic in Harare, Zimbabwe". Viral Immunology 32 7 (2019): 289-295. http://dx.doi.org/10.1089/vim.2019.0024.
10.1089/vim.2019.0024
- Damena, Delesa; Denis, Awany; Golassa, Lemu; Chimusa, Emile R.. "Genome-wide association studies of severe P. falciparum malaria
susceptibility: progress, pitfalls and prospects". BMC Medical Genomics 12 1 (2019): http://dx.doi.org/10.1186/s12920-019-0564-x.
10.1186/s12920-019-0564-x
- Denis Awany; Imane Allali; Emile R Chimusa; Awany, Denis; Allali, Imane; Chimusa, Emile R. "Tantalizing dilemma in risk prediction
from disease scoring statistics". Briefings in Functional Genomics 18 4 (2019): 211-219. https://doi.org/10.1093/bfgp/ely040.
10.1093/bfgp/ely040
- Bope, Christian Domilongo; Chimusa, Emile R.; Nembaware, Victoria; Mazandu, Gaston K.; de Vries, Jantina; Wonkam, Ambroise.
"Dissecting in silico Mutation Prediction of Variants in African Genomes: Challenges and Perspectives". Frontiers in Genetics
10 (2019): http://dx.doi.org/10.3389/fgene.2019.00601.
10.3389/fgene.2019.00601
- Damena, Delesa; Tolosa, Samuel; Hailemariam, Milkessa; Zewude, Aboma; Worku, Adane; Mekonnen, Biruk; Mohammed, Temesgen; et
al. "Genetic diversity and drug susceptibility profiles of Mycobacterium tuberculosis obtained from Saint Peter’s TB specialized
Hospital, Ethiopia". PLOS ONE 14 6 (2019): e0218545. http://dx.doi.org/10.1371/journal.pone.0218545.
10.1371/journal.pone.0218545
- Nyarai Desiree Soko; Emile Chimusa; Collen Masimirembwa; Collet Dandara; Soko, Nyarai Desiree; Chimusa, Emile; Masimirembwa,
Collen; Dandara, Collet. "An African-specific profile of pharmacogene variants for rosuvastatin plasma variability: limited
role for SLCO1B1 c.521T>C and ABCG2 c.421A>C". The Pharmacogenomics Journal 19 3 (2019): 240-248. https://doi.org/10.1038/s41397-018-0035-3.
10.1038/s41397-018-0035-3
- Mnika, Khuthala; Mazandu, Gaston K.; Jonas, Mario; Pule, Gift D.; Chimusa, Emile R.; Hanchard, Neil A.; Wonkam, Ambroise.
"Hydroxyurea-Induced miRNA Expression in Sickle Cell Disease Patients in Africa". Frontiers in Genetics 10 (2019):
http://dx.doi.org/10.3389/fgene.2019.00509.
10.3389/fgene.2019.00509
- Emile R Chimusa; Shareefa Dalvie; Collet Dandara; Ambroise Wonkam; Gaston K Mazandu; Chimusa, Emile R; Dalvie, Shareefa; et
al. "Post genome-wide association analysis: dissecting computational pathway/network-based approaches". Briefings in Bioinformatics
20 2 (2019): 690-700. https://doi.org/10.1093/bib/bby035.
10.1093/bib/bby035
- Awany, Denis; Allali, Imane; Dalvie, Shareefa; Hemmings, Sian; Mwaikono, Kilaza S.; Thomford, Nicholas E.; Gomez, Andres;
Mulder, Nicola; Chimusa, Emile R.. "Host and Microbiome Genome-Wide Association Studies: Current State and Challenges". Frontiers
in Genetics 9 (2019): http://dx.doi.org/10.3389/fgene.2018.00637.
10.3389/fgene.2018.00637
- Adekile, Adekunle; Anie, Kofi A; Hamda, Cherif Ben; Brown, Biobele; Bukini, Daima; Campbell, Andrew; Chaouch, Melek; et al.
"The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation". Database 2019 (2019):
http://dx.doi.org/10.1093/database/baz118.
10.1093/database/baz118
- Emile R Chimusa; Joel Defo; Prisca K Thami; Denis Awany; Delesa D Mulisa; Imane Allali; Hassan Ghazal; et al. "Dating admixture
events is unsolved problem in multi-way admixed populations". Briefings in Bioinformatics (2018): https://doi.org/10.1093/bib/bby112.
10.1093/bib/bby112
- Chimusa, Emile R; Beighton, Peter; Kumuthini, Judit; Ramesar, Rajkumar S. "Detecting genetic modifiers of spondyloepimetaphyseal
dysplasia with joint laxity in the Caucasian Afrikaner community". Human Molecular Genetics 28 7 (2018): 1053-1063.
http://dx.doi.org/10.1093/hmg/ddy373.
10.1093/hmg/ddy373
- Thomford, Nicholas Ekow; Dzobo, Kevin; Chimusa, Emile; Andrae-Marobela, Kerstin; Chirikure, Shadreck; Wonkam, Ambroise; Dandara,
Collet. "Personalized Herbal Medicine? A Roadmap for Convergence of Herbal and Precision Medicine Biomarker Innovations".
OMICS: A Journal of Integrative Biology 22 6 (2018): 375-391. http://dx.doi.org/10.1089/omi.2018.0074.
10.1089/omi.2018.0074
- Thomford, Nicholas Ekow; Dzobo, Kevin; Yao, Nana Akyaa; Chimusa, Emile; Evans, Jonathan; Okai, Emmanuel; Kruszka, Paul; et
al. "Genomics and Epigenomics of Congenital Heart Defects: Expert Review and Lessons Learned in Africa". OMICS: A Journal
of Integrative Biology 22 5 (2018): 301-321. http://dx.doi.org/10.1089/omi.2018.0033.
10.1089/omi.2018.0033
- Wonkam, Ambroise; Mnika, Khuthala; Ngo Bitoungui, Valentina J.; Chetcha Chemegni, Bernard; Chimusa, Emile R.; Dandara, Collet;
Kengne, Andre P.. "Clinical and genetic factors are associated with pain and hospitalisation rates in sickle cell anaemia
in Cameroon". British Journal of Haematology 180 1 (2017): 134-146. http://dx.doi.org/10.1111/bjh.15011.
10.1111/bjh.15011
- Choudhury, Ananyo; Ramsay, Michèle; Hazelhurst, Scott; Aron, Shaun; Bardien, Soraya; Botha, Gerrit; Chimusa, Emile R.; et
al. "Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans". Nature Communications
8 1 (2017): http://dx.doi.org/10.1038/s41467-017-00663-9.
10.1038/s41467-017-00663-9
- Yocgo, Rosita E.; Geza, Ephifania; Chimusa, Emile R.; Mazandu, Gaston K.. "A post-gene silencing bioinformatics protocol for
plant-defence gene validation and underlying process identification: case study of the Arabidopsis thaliana NPR1". BMC
Plant Biology 17 1 (2017): http://dx.doi.org/10.1186/s12870-017-1151-y.
10.1186/s12870-017-1151-y
- Dandara, C; Chimusa, E R; Wonkam, A. "South African student protests, 2015 - 2016: The aftermath viewed through Medical Science
Honours students at the University of Cape Town". South African Medical Journal 107 9 (2017): 723. http://dx.doi.org/10.7196/samj.2017.v107i9.12714.
10.7196/samj.2017.v107i9.12714
- Mugo, Jacquiline W; Geza, Ephifania; Defo, Joel; Elsheikh, Samar S M; Mazandu, Gaston K; Mulder, Nicola J; Chimusa, Emile
R. "A multi-scenario genome-wide medical population genetics simulation framework". Bioinformatics 33 19 (2017): 2995-3002.
http://dx.doi.org/10.1093/bioinformatics/btx369.
10.1093/bioinformatics/btx369
- Jongeneel, C. Victor; Achinike-Oduaran, Ovokeraye; Adebiyi, Ezekiel; Adebiyi, Marion; Adeyemi, Seun; Akanle, Bola; Aron, Shaun;
et al. "Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network". PLOS
Computational Biology 13 6 (2017): e1005419. http://dx.doi.org/10.1371/journal.pcbi.1005419.
10.1371/journal.pcbi.1005419
- Mulder, Nicola J.; Adebiyi, Ezekiel; Adebiyi, Marion; Adeyemi, Seun; Ahmed, Azza; Ahmed, Rehab; Akanle, Bola; et al. "Development
of Bioinformatics Infrastructure for Genomics
Research". Global Heart 12 2 (2017): 91. http://dx.doi.org/10.1016/j.gheart.2017.01.005.
10.1016/j.gheart.2017.01.005
- Mazandu, Gaston K.; Chimusa, Emile R.; Rutherford, Kayleigh; Zekeng, Elsa-Gayle; Gebremariam, Zoe Z.; Onifade, Maryam Y.;
Mulder, Nicola J.. "Large-scale data-driven integrative framework for extracting essential targets and processes from disease-associated
gene data sets". Briefings in Bioinformatics (2017): http://dx.doi.org/10.1093/bib/bbx052.
10.1093/bib/bbx052
- Geard, Amy; Pule, Gift D.; Chetcha Chemegni, Bernard; Ngo Bitoungui, Valentina J.; Kengne, Andre P.; Chimusa, Emile R.; Wonkam,
Ambroise. "Clinical and genetic predictors of renal dysfunctions in sickle cell anaemia in Cameroon". British Journal of
Haematology 178 4 (2017): 629-639. http://dx.doi.org/10.1111/bjh.14724.
10.1111/bjh.14724
- Lebeko, Kamogelo; Manyisa, Noluthando; Chimusa, Emile R.; Mulder, Nicola; Dandara, Collet; Wonkam, Ambroise. "A Genomic and
Protein–Protein Interaction Analyses of Nonsyndromic Hearing Impairment in Cameroon Using Targeted Genomic Enrichment and
Massively Parallel Sequencing". OMICS: A Journal of Integrative Biology 21 2 (2017): 90-99. http://dx.doi.org/10.1089/omi.2016.0171.
10.1089/omi.2016.0171
- Pule, G. D.; Chimusa, E. R.; Mnika, K.; Mhandire, K.; Kampira, E.; Dandara, C.; Wonkam, A.. "Beta-globin gene haplotypes and
selected Malaria-associated variants among black Southern African populations". Global Health, Epidemiology and Genomics
2 (2017): http://dx.doi.org/10.1017/gheg.2017.14.
10.1017/gheg.2017.14
- Kumuthini, Judit; Mbiyavanga, Mamana; Chimusa, Emile R; Pathak, Jyotishman; Somervuo, Panu; Van Schaik, Ron HN; Dolzan, Vita;
et al. "Minimum information required for a DMET experiment reporting". Pharmacogenomics 17 14 (2016): 1533-1545. http://dx.doi.org/10.2217/pgs-2016-0015.
10.2217/pgs-2016-0015
- Mazandu, Gaston K.; Chimusa, Emile R.; Mulder, Nicola J.. "Gene Ontology semantic similarity tools: survey on features and
challenges for biological knowledge discovery". Briefings in Bioinformatics (2016): bbw067. http://dx.doi.org/10.1093/bib/bbw067.
10.1093/bib/bbw067
- Mulder, Nicola J.; Adebiyi, Ezekiel; Alami, Raouf; Benkahla, Alia; Brandful, James; Doumbia, Seydou; Everett, Dean; et al.
"H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa". Genome Research
26 2 (2015): 271-277. http://dx.doi.org/10.1101/gr.196295.115.
10.1101/gr.196295.115
- Chimusa, Emile R.; Mbiyavanga, Mamana; Masilela, Velaphi; Kumuthini, Judit. "“Broadband” Bioinformatics Skills Transfer with
the Knowledge Transfer Programme (KTP): Educational Model for Upliftment and Sustainable Development". PLOS Computational
Biology 11 11 (2015): e1004512. http://dx.doi.org/10.1371/journal.pcbi.1004512.
10.1371/journal.pcbi.1004512
- Chimusa, Emile R.; Mbiyavanga, Mamana; Mazandu, Gaston K.; Mulder, Nicola J.. "ancGWAS: a post genome-wide association study
method for interaction, pathway and ancestry analysis in homogeneous and admixed populations". Bioinformatics 32 4
(2015): 549-556. http://dx.doi.org/10.1093/bioinformatics/btv619.
10.1093/bioinformatics/btv619
- Mazandu, Gaston K.; Chimusa, Emile R.; Mbiyavanga, Mamana; Mulder, Nicola J.. "A-DaGO-Fun: an adaptable Gene Ontology semantic
similarity-based functional analysis tool". Bioinformatics 32 3 (2015): 477-479. http://dx.doi.org/10.1093/bioinformatics/btv590.
10.1093/bioinformatics/btv590
- Chimusa, Emile R.; Meintjies, Ayton; Tchanga, Milaine; Mulder, Nicola; Seoighe, Cathal; Soodyall, Himla; Ramesar, Rajkumar.
"A Genomic Portrait of Haplotype Diversity and Signatures of Selection in Indigenous Southern African Populations". PLOS
Genetics 11 3 (2015): e1005052. http://dx.doi.org/10.1371/journal.pgen.1005052.
10.1371/journal.pgen.1005052
- Daya, Michelle; van der Merwe, Lize; Galal, Ushma; Möller, Marlo; Salie, Muneeb; Chimusa, Emile R.; Galanter, Joshua M.; et
al. "A Panel of Ancestry Informative Markers for the Complex Five-Way Admixed South African Coloured Population". PLoS
ONE 8 12 (2013): e82224. http://dx.doi.org/10.1371/journal.pone.0082224.
10.1371/journal.pone.0082224
- Chimusa, E. R.; Zaitlen, N.; Daya, M.; Moller, M.; van Helden, P. D.; Mulder, N. J.; Price, A. L.; Hoal, E. G.. "Genome-wide
association study of ancestry-specific TB risk in the South African Coloured population". Human Molecular Genetics
23 3 (2013): 796-809. http://dx.doi.org/10.1093/hmg/ddt462.
10.1093/hmg/ddt462
- Chimusa, Emile R.; Daya, Michelle; Möller, Marlo; Ramesar, Raj; Henn, Brenna M.; van Helden, Paul D.; Mulder, Nicola J.; Hoal,
Eileen G.. "Determining Ancestry Proportions in Complex Admixture Scenarios in South Africa Using a Novel Proxy Ancestry Selection
Method". PLoS ONE 8 9 (2013): e73971. http://dx.doi.org/10.1371/journal.pone.0073971.
10.1371/journal.pone.0073971
- de Wit, Erika; Delport, Wayne; Rugamika, Chimusa E.; Meintjes, Ayton; Möller, Marlo; van Helden, Paul D.; Seoighe, Cathal;
Hoal, Eileen G.. "Genome-wide analysis of the structure of the South African Coloured Population in the Western Cape". Human
Genetics 128 2 (2010): 145-153. http://dx.doi.org/10.1007/s00439-010-0836-1.
10.1007/s00439-010-0836-1
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