???global.info.a_carregar???
Nuno Alexandre Faria has a degree in Biologia Microbiana e Genética, by Faculdade de Ciência, Universida de Lisboa, in 2002. He continue his studies and obtain his PhD degree through the ITQB PhD Program in Chemical and Biological Sciences, in 2009, at Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa. After the PhD he continues his scientific research as a Postdoctoral fellow, and later as researcher, where he addressed antibiotic resistance, epidemiology and evolutionary mechanisms of gram-positive and gram-negative human pathogens. His initial studies have been focused on Staphylococcus aureus and other staphylococci, gathering information on the clonal evolution and relationship between nosocomial and community environments. In order to extend and strength the knowledge in this field, he expand to gram-negative bacteria, mainly carbapenemase resistant Klebsiella pneumonia, where he focus their resistance mechanisms, epidemiology and clonal evolution in the hospital setting. Furthermore, the environment where these bacteria live and evolve is so diverse and complex that understanding the role of microbiome in the epidemiology of nosocomial infection, as well as the interactions between host microbiome and nosocomial environment, is also one of the area of interest, as it represents key factors in the development in infection control strategies. The establishment of relationship between nosocomial and community pathogens and environmental isolates will allow a better understanding of bacterial population dynamics, as also their role in the dissemination of antibiotic resistance. For the achievements of these goals he develops interest and acquire competence with whole genome sequencing (WGS), and respective analysis of short and long reads, as these technologies provide a deeper and comprehensive analysis of such populations and genetic determinants. WGS is now a regular and major tool used on his research. N. A. Faria has published 21 papers in peer-reviewed journals that comprise 889 citations and an h-index of 13 (SCOPUS database): he is corresponding author in one. In the last 5 years the works where he collaborate has been invited for three (3) oral communications in scientific meetings, and was involved in several poster communications (n=18). Since 2012, he has been parte of research team in several national and international funding research projects. During this period, he was involved in the co-supervision of ten (10) students (PhD=2, Master=4, undergraduate=4). Additionally, N. A. Faria has been as well involved in organization of two international meeting (IX IMMEM and Microbiologia2022), in S. aureus MLST database curation, participation in the jury panel of international grants and abstracts (e.g. ESCMID). Also, he has been involved in academic activities: two Master program in theoretical and/or practical classes, as also as principal examiner of five (5) Master thesis.
Identification

Personal identification

Full name
Nuno Alexandre Faria

Citation names

  • Faria, Nuno A.
  • Faria, N.

Author identifiers

Ciência ID
6411-9BC5-50B3
ORCID iD
0000-0003-3762-9809

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Molecular Biology
  • Natural sciences - Biological Sciences - Microbiology

Languages

Language Speaking Reading Writing Listening Peer-review
French Beginner (A1) Beginner (A1) Beginner (A1) Beginner (A1)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Portuguese (Mother tongue)
Projects

Contract

Designation Funders
2021/01/01 - 2025/12/31 Ciências da Vida para um Futuro Saudável e Sustentável
LA/P/0087/2020
Universidade Nova de Lisboa Microbiologia Molecular Estrutural e Celular, Portugal

Instituto Português de Oncologia de Lisboa Francisco Gentil EPE, Portugal

Universidade Nova de Lisboa, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal

Instituto Gulbenkian de Ciência, Portugal

Universidade de Lisboa Centro de Estudos Comparatistas, Portugal

BioResources 4 Sustainability, Portugal

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2019/01/01 - 2019/12/31 Microbiologia Molecular, Estrutural e Celular
UID/CBQ/04612/2019
Researcher
Universidade Nova de Lisboa, Portugal

Universidade Nova de Lisboa Microbiologia Molecular Estrutural e Celular, Portugal

Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Conference poster
  1. ARAÚJO, MARIANA; Faria, Nuno A.; Gonçalo, Margarida ; Nakonieczna, Joanna ; Torres, Carmen; Campanile, Floriana; Netto dos Santos, Katia; Rita G. Sobral; Miragaia, Maria. "Distinct genomic backgrounds of Staphylococcus aureus in atopic dermatitis". Paper presented in 34th European Congress of Clinical Microbiology & Infectious Diseases (34thECCMID), 2024.
  2. Faria, Nuno A.; Roberta Filipini Rampelotto; Rosmari Horner; Maria Miragaia. Corresponding author: Faria, Nuno A.. "Genomics insights into the complexity of Staphylococcus epidermidis transmission in a neonatal intensive care units (NICU)". Paper presented in European Congress of Clinical Microbiology & Infectious Diseases (34thECCMID), 2024.
  3. Conceição, Teresa; Ana Amaral; Faria, Nuno A.; Maria Miragaia; de Lencastre, Herminia. "Clonal expansion of a human-associated methicillin susceptible Staphylococcus aureus ST398 lineage among invasive infections in Portuguese hospitals". Paper presented in 29th Infection and Sepsis Symposium, 2024.
  4. Caieiro, Diana; Faria, Nuno A.; ARAÚJO, MARIANA; Joanna Nakonieczna; Rita G. Sobral; Miragaia, Maria. "Atopic Dermatitis microenvironment favours Staphylococcus aureus growth and promotes antibiotic resistance". Paper presented in Congress of Microbiology and Biotechnology 2023, 2023.
  5. ARAÚJO, MARIANA; Faria, Nuno A.; Gonçalo, Margarida ; Nakonieczna, Joanna ; Torres, Carmen; Campanile, Floriana; Netto dos Santos, Katia; Rita G. Sobral; Miragaia, Maria. "Staphylococcus aureus from atopic dermatitis are associated to specific clonal types and virulence profile". Paper presented in Microbiotec'23 - Congress of Microbiology and Biotechnology, 2023.
  6. ARAÚJO, MARIANA; Faria, Nuno A.; Camoez, Mariana; Bouchami, Ons; Helena Fernandes; Maria João Fraqueza; Miragaia, Maria. "Genomic analysis of Enterobacter asburiae strains isolated from a healthy human in Portugal carrying the mobile colistin resistance gene mcr-10". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases, 2023.
  7. T. Miranda; G. Guerreiro; L. Morais; V. Mendes; Faria, Nuno A.; de Lencastre, H.; Miragaia, Maria ; Pedro Póvoa. "Pneumonia necrotizante a Staphylococcus aureus meticilino-sensível produtora de LPV.". Paper presented in VII Jornadas Técnicas de Medicina Intensiva., 2022.
  8. Catarina Amaral; S. M. da Silva; W. Antunes; A. G. Duarte; Elin Moe; L. M. P. Lima; Faria, Nuno A.; et al. "From lab to field: low cost saliva tests for mass-screening of SARS-CoV-2.". Paper presented in V International Conference NOVAhealth Chronic Disease and Infection “COVID 19: the contribution of NOVA - Lessons learned, perspectives for the future”., 2022.
  9. ARAÚJO, MARIANA; Faria, Nuno A.; Camoez, Mariana; Bouchami, Ons; Fernandes, Helena; Fraqueza, M. J.; Helena Fernandes; Maria João Fraqueza; Miragaia, Maria. "Pork production chain in Portugal constitutes a reservoir of antibiotic resistance genes and pathogenic Enterobacterales". Paper presented in 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII), 2022.
  10. Rampelotto, R. F.; Faria, Nuno A.; R. Hörner; M. Miragaia. "Dynamics of staphylococcal cassette chromosome (SCC) elements in Staphylococcus epidermidis from bloodstream infections in NICU". Paper presented in 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII), 2022.
Journal article
  1. Faria, Nuno A.; Touret, Tiago; Simões, Alexandra S; Palos, Carlos; Bispo, Soraia; Melo Cristino, Jose; Ramirez, Mário; et al. Corresponding author: Maria Miragaia. "Genomic Insights into the expansion of Carbapenem-Resistant Klebsiella pneumoniae within Portuguese Hospitals". Journal of Hospital Infection (2024):
    Accepted
  2. Nobre, C.; Moniz, P.; Faria, Nuno A.. "Methicilin-susceptible Staphylococcus aureus clonal complex 398: An unusual agent of necrotizing pneumonia". Pulmonology (2023): http://dx.doi.org/10.1016/j.pulmoe.2023.10.003.
    Open access • 10.1016/j.pulmoe.2023.10.003
  3. Raquel Portela; Faria, Nuno A.; Michael Mwangi; Maria Miragaia; Hermínia de Lencastre; Alexander Tomasz; Rita Gonçalves Sobral. "Analysis of a Cell Wall Mutant Highlights Rho-Dependent Genome Amplification Events in Staphylococcus aureus". Microbiology Spectrum 10 (2022):
    Open access • Published • 10.1128/spectrum.02483-21
Preprint
  1. da Silva, Sofia M.; Amaral, Catarina; Luís, Cláudia; Grilo, Diana; Duarte, Américo; Morais, Inês; Afonso, Gonçalo; et al. "A low-cost molecular test for SARS-CoV-2 detection suitable for variant discrimination and community testing using saliva". 2023. http://dx.doi.org/10.1101/2023.07.20.23292863.
    10.1101/2023.07.20.23292863
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2023/12/09 SCCmec acquisition is linked to Staphylococcus epidermidis bloodstream infection outbreaks in a neonate intensive care unit (NICU) Microbiotec23 - Congress of Microbiology and Biotechnology 2023
Sociedade Portuguesa de Microbiologia (Covilhã, Portugal)
2022/10/17 Cadeia de produção de suínos constitui um reservatório de Enterobacterales resistentes a antibióticos Microbiologia 2022 - Congresso Internacional de Microbiologia em Língua Portuguesa
Sociedade Portuguesa de Microbiologia (Portugal)

Event organisation

Event name
Type of event (Role)
Institution / Organization
2022 - 2022 Microbiologia2022 (2022/10/17 - 2022/10/29)
Congress (Member of the Scientific Committee)
Sociedade Portuguesa de Microbiologia, Portugal
2016 - 2016 XI International Meeting on Microbial Epidemiological Markers (IMMEM) (2016/03/09 - 2016/03/12)
Congress (Member of the Organising Committee)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2016 - 2016 Annual IGC - ITQB - IMM - CCU Post-doc retreat (2016/10/19 - 2016/10/21)
Meeting (Member of the Organising Committee)

Jury of academic degree

Topic
Role
Candidate name (Type of degree)
Institution / Organization
2023/12/18 Estudo da atividade antimicrobiana de novos compostos NHC em S. aureus e em E. coli
(Thesis) Main arguer
Pedro Tiago Fonseca Coelho (Master)
Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia, Portugal

Conference scientific committee

Conference name Conference host
2023/12/04 - 2023/12/20 ECCMID 2024 - 34th European Congress of Clinical Microbiology and Infectious Diseases Barcelona
Distinctions

Award

2024 Best poster presentation - 29th Infection and Sepsis Symposium
Grupo de Investigação e Desenvolvimento em Infeção e Sepsis – GIS-ID, Portugal
2023 Best poster presentation - MicroBiotec23
Sociedade Portuguesa de Microbiologia, Portugal
2022 Best poster presentation - VII Jornadas Técnicas de Medicina Intensiva.
Centro Hospitalar de Lisboa Central EPE, Portugal