???global.info.a_carregar???
Identification

Personal identification

Full name
Maria João Pereira e Sousa

Citation names

  • Sousa, Maria J. P.

Author identifiers

Ciência ID
5D11-BFBD-E0C4
ORCID iD
0009-0005-1372-9348

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
French Elementary (A2) Elementary (A2) Elementary (A2) Elementary (A2)
Education
Degree Classification
2023/09/05 - 2027/09/01
Ongoing
 Informática (Doutoramento)
Universidade de Aveiro, Portugal

Universidade do Porto, Portugal

Universidade do Minho, Portugal
2021/10/01 - 2023/07/10
Concluded
 Engenharia Informática (Mestrado)
Universidade de Aveiro, Portugal
2018/09/17 - 2021/07/03
Concluded
 Engenharia Informática (Licenciatura)
ISCTE-Instituto Universitário de Lisboa, Portugal
Outputs

Publications

Conference abstract
  1. Sousa, Maria J. P.; Pratas, Diogo. "A method to reconstruct persistent human viral sequences cooperatively". Paper presented in Research Summit 2024, Aveiro, 2024.
    Published
  2. Sousa, Maria J. P.; Pratas, Diogo. "A method for improving the generation of viral consensus sequences using adaptive models". Paper presented in 6th Statistics on Health Decision Making: Artificial Intelligence, SHDM 2024, Aveiro, 2024.
    Published
  3. Sousa, Maria J. P.; Pratas, Diogo. "A cooperative method to reconstruct persistent human viral sequences". Paper presented in The 20th Portugaliæ Genetica: DNA - Ancient and New, Porto, 2024.
    Published
Conference paper
  1. Sousa, Maria J. P.; Armando J Pinho; Pratas, Diogo. "Improving the generation of viral consensus sequences using adaptive models". Paper presented in 32nd European Signal Processing Conference, EUSIPCO 2024, Lyon, 2024.
  2. Sousa, Maria J. P.; Armando J Pinho; Pratas, Diogo. "A sensitive compression-based method for filtering targeted FASTQ sequencing reads". Paper presented in 32nd European Signal Processing Conference, EUSIPCO 2024, Lyon, 2024.
  3. Fonseca, Tiago; Sousa, Maria J. P.; Armando J Pinho; Pratas, Diogo. "A sorting tool for improving FASTA data compression tools". Paper presented in 32nd European Signal Processing Conference, EUSIPCO 2024, Lyon, 2024.
  4. Sousa, Maria J. P.; Pratas, Diogo. "A method for improving the generation of consensus sequences". Paper presented in 19th Workshop on Informatics Engineering Research, WIER 2024, Porto, 2024.
    Published
  5. Sousa, Maria J. P.; Pratas, Diogo. "A method for accurate reconstruction of persistent human viral sequences". Paper presented in 29th Portuguese Conference on Pattern Recognition, RecPad 2023, Coimbra, 2023.
    Published
  6. Sousa, Maria J. P.; Pratas, Diogo. "A survey on computational tools for human viral genomes reconstruction". Paper presented in 28th Portuguese Conference on Pattern Recognition, RecPad 2022, Leiria, 2022.
    Published
  7. Sousa, Maria J. P.; Ferrolho, Rita; Fonseca, Tiago; Pinho, Armando J.; Pratas, Diogo. "Improving the compression of a complete Telomere-to-Telomere (T2T) human genome sequence". Paper presented in 28th Portuguese Conference on Pattern Recognition, RecPad 2022, Leiria, 2022.
    Published
Conference poster
  1. Sousa, Maria J. P.; Pinho, Armando J.; Pratas, Diogo. "Improving the generation of viral consensus sequences using adaptive models". Paper presented in 32nd European Signal Processing Conference, EUSIPCO 2024, 2024.
  2. Sousa, Maria J. P.; Pinho, Armando J.; Pratas, Diogo. "A sensitive compression-based method for filtering targeted FASTQ sequencing reads". Paper presented in 32nd European Signal Processing Conference, EUSIPCO 2024, 2024.
  3. Fonseca, Tiago; Sousa, Maria J. P.; Armando J Pinho; Pratas, Diogo. "A sorting tool for improving FASTA data compression tools". Paper presented in 32nd European Signal Processing Conference, EUSIPCO 2024, 2024.
  4. Sousa, Maria J. P.; Pratas, Diogo. "A method for improving the generation of viral consensus sequences using adaptive models". Paper presented in 6th Statistics on Health Decision Making: Artificial Intelligence, SHDM 2024, 2024.
  5. Sousa, Maria J. P.; Pratas, Diogo. "A method for accurate reconstruction of persistent human viral sequences". Paper presented in 29th Portuguese Conference on Pattern Recognition, RecPad 2023, 2023.
  6. Sousa, Maria J. P.; Ferrolho, Rita; Fonseca, Tiago; Pinho, Armando J.; Pratas, Diogo. "Improving the compression of a complete Telomere-to-Telomere (T2T) human genome sequence". Paper presented in 28th Portuguese Conference on Pattern Recognition, RecPad 2022, 2022.
  7. Sousa, Maria J. P.; Pratas, Diogo. "A survey on computational tools for human viral genomes reconstruction". Paper presented in 28th Portuguese Conference on Pattern Recognition, RecPad 2022, 2022.
Journal article
  1. Sousa, Maria J. P.; Armando J Pinho; Pratas, Diogo. Corresponding author: Pratas, Diogo. "JARVIS3: an efficient encoder for genomic data". Bioinformatics 40 12 (2024):
    Published
Thesis / Dissertation
  1. "Automatic reconstruction of persistent human virus sequences". Master, Universidade de Aveiro, 2023. http://hdl.handle.net/10773/40666.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2024/07/19 A method to reconstruct persistent human viral sequences cooperatively Research Summit 2024
2024/04/24 A method for improving the generation of consensus sequences 19th Workshop on Informatics Engineering Research, WIER 2024
2024/03/21 A cooperative method to reconstruct persistent human viral sequences The 20th Portugaliæ Genetica: DNA - Ancient and New
Distinctions

Other distinction

2024 Honorable mention at 6th Statistics on Health Decision Making: Artificial Intelligence