| Journal article |
- Joshua Zhang; Jordan Teoli; Benjamin Rey; Cristina Vieira; Jean-françois Lemaitre; Ingrid Plotton; Gabriel Marais; Steve Horvath.
"Epigenetic Clock Analysis of Sex Chromosome Aneuploidies". Aging Cell (2025): https://hal.science/hal-05299075.
10.1111/acel.70243
- Prentout, Djivan; El Aoudati, Salma; Mathis, Fabienne; Marais, Gabriel A B; Henri, Hélène. "Promising high fidelity genetic
markers for sexing Cannabis sativa seedlings". G3: Genes, Genomes, Genetics (2025): https://doi.org/10.1093/g3journal/jkaf077.
10.1093/g3journal/jkaf077
- Branco, Catarina; Roxo, Guilherme; Chapoix, Isaline; Rego, Ruben M C; Tessarotto, Hugo; Santoni, Sylvain; Moura, Monica; Marais,
Gabriel A B. "A XY chromosome system in Laurus azorica, an endemic dioecious laurel from the Azores". Journal of
Evolutionary Biology (2025): https://doi.org/10.1093/jeb/voaf032.
10.1093/jeb/voaf032
- Moraga, Carol; Branco, Catarina; Rougemont, Quentin; Jedlicka, Pavel; Mendoza-Galindo, Eddy; Veltsos, Paris; Hanique, Melissa;
et al. "The Silene latifolia genome and its giant Y chromosome". Science 387 6734 (2025):
630-636. https://doi.org/10.1126/science.adj7430.
10.1126/science.adj7430
- Cayuela, Hugo; Gaillard, Jean-Michel; Vieira, Cristina; Ronget, Victor; Gippet, Jérôme M.W.; Conde García, Thamar; Marais,
Gabriel A.B.; Lemaître, Jean-François. "Sex differences in adult lifespan and aging rate across mammals: A test of the ‘Mother
Curse hypothesis’". Mechanisms of Ageing and Development 212 (2023): 111799. https://doi.org/10.1016/j.mad.2023.111799.
10.1016/j.mad.2023.111799
- Gabriel Marais; Jean-François Lemaître Lemaître. "Sex chromosomes, sex ratios and sex gaps in longevity in plants". Philosophical
Transactions of the Royal Society B: Biological Sciences (2022): https://hal.science/hal-03615239.
10.1098/rstb.2021.0219
- Muyle, Aline; Marais, Gabriel A. B.; Bacovský, Václav; Hobza, Roman; Lenormand, Thomas. "Dosage compensation evolution in
plants: theories, controversies and mechanisms". Philosophical Transactions of the Royal Society B: Biological Sciences
377 1850 (2022): https://doi.org/10.1098/rstb.2021.0222.
10.1098/rstb.2021.0222
- Marine Paucsik; Christophe Leys; Gabriel Marais; Céline Baeyens; Rebecca Shankland. "Self-compassion and savouring buffer
the impact of the first year of the COVID-19 on PhD students' mental health". Stress and Health (2022): https://hal.univ-grenoble-alpes.fr/hal-03614752.
10.1002/smi.3142
- Cayuela, Hugo; Lemaître, Jean-François; Léna, Jean-Paul; Ronget, Victor; Martínez-Solano, Iñigo; Muths, Erin; Pilliod, David
S.; et al. "Sex-related differences in aging rate are associated with sex chromosome system in amphibians". Evolution
76 2 (2022): 346-356. https://doi.org/10.1111/evo.14410.
10.1111/evo.14410
- Käfer, Jos; Bewick, Adam; Andres-Robin, Amélie; Lapetoule, Garance; Harkess, Alex; Caïus, José; Fogliani, Bruno; et al. "A
derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering
plants". New Phytologist 233 4 (2021): 1636-1642. https://doi.org/10.1111/nph.17662.
10.1111/nph.17662
- Prentout, Djivan; Stajner, Natasa; Cerenak, Andreja; Tricou, Theo; Brochier-Armanet, Celine; Jakse, Jernej; Käfer, Jos; Marais,
Gabriel A. B.. "Plant genera Cannabis and Humulus share the same pair of well-differentiated sex chromosomes".
New Phytologist 231 4 (2021): 1599-1611. https://doi.org/10.1111/nph.17456.
10.1111/nph.17456
- Muyle, Aline; Bachtrog, Doris; Marais, Gabriel A. B.; Turner, James M. A.. "Epigenetics drive the evolution of sex chromosomes
in animals and plants". Philosophical Transactions of the Royal Society B: Biological Sciences 376 1826 (2021): 20200124.
https://doi.org/10.1098/rstb.2020.0124.
10.1098/rstb.2020.0124
- Käfer, Jos; Lartillot, Nicolas; Marais, Gabriel A B; Picard, Franck. "Detecting sex-linked genes using genotyped individuals
sampled in natural populations". Genetics 218 2 (2021): https://doi.org/10.1093/genetics/iyab053.
10.1093/genetics/iyab053
- Gabriel Marais; Sophie Lantheaume; Robin Fiault; rebecca shankland. "Mindfulness-Based Programs Improve Psychological Flexibility,
Mental Health, Well-Being, and Time Management in Academics". European Journal of Investigation in Health, Psychology and
Education (2020): https://www.mdpi.com/2254-9625/10/4/73.
10.3390/ejihpe10040073
- Marais, Gabriel A.B.; Batut, Bérénice; Daubin, Vincent. "Genome Evolution: Mutation Is the Main Driver of Genome Size in Prokaryotes".
Current Biology 30 19 (2020): R1083-R1085. https://doi.org/10.1016/j.cub.2020.07.093.
10.1016/j.cub.2020.07.093
- Muyle, Aline; Martin, Hélène; Zemp, Niklaus; Mollion, Maéva; Gallina, Sophie; Tavares, Raquel; Silva, Alexandre; et al. "Dioecy
Is Associated with High Genetic Diversity and Adaptation Rates in the Plant GenusSilene". Molecular Biology and
Evolution 38 3 (2020): 805-818. https://doi.org/10.1093/molbev/msaa229.
10.1093/molbev/msaa229
- Badouin, Hélène; Velt, Amandine; Gindraud, François; Flutre, Timothée; Dumas, Vincent; Vautrin, Sonia; Marande, William; et
al. "The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication".
Genome Biology 21 1 (2020): https://doi.org/10.1186/s13059-020-02131-y.
10.1186/s13059-020-02131-y
- Cécile Fruchard; Hélène Badouin; David Latrasse; Ravi Suresh Devani; Aline Muyle; Bénédicte Rhoné; Susanne Renner; et al.
"Evidence for Dosage Compensation in Coccinia grandis, a Plant with a Highly Heteromorphic XY System". Genes
(2020): https://www.mdpi.com/2073-4425/11/7/787.
10.3390/genes11070787
- Gabriel Marais; Sophie Lantheaume; Robin Fiault; Rebecca Shankland. "Mindfulness-based programs improve psychological flexibility,
mental health, well-being and time management in academics". European Journal of Investigation in Health, Psychology and
Education (2020): https://hal.univ-grenoble-alpes.fr/hal-04054045.
10.31234/osf.io/9w4zp
- Lemaître, Jean-François; Ronget, Victor; Tidière, Morgane; Allainé, Dominique; Berger, Vérane; Cohas, Aurélie; Colchero, Fernando;
et al. "Sex differences in adult lifespan and aging rates of mortality across wild mammals". Proceedings of the National
Academy of Sciences 117 15 (2020): 8546-8553. https://doi.org/10.1073/pnas.1911999117.
10.1073/pnas.1911999117
- Prentout, Djivan; Razumova, Olga; Rhoné, Bénédicte; Badouin, Hélène; Henri, Hélène; Feng, Cong; Käfer, Jos; Karlov, Gennady;
Marais, Gabriel A.B.. "An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa".
Genome Research 30 2 (2020): 164-172. https://doi.org/10.1101/gr.251207.119.
10.1101/gr.251207.119
- Paris Veltsos; Kate Ridout; Melissa Toups; Santiago González-Martínez; Aline Muyle; Olivier Emery; Pasi Rastas; et al. "Early
Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua". Genetics (2019): https://cnrs.hal.science/hal-02347957.
10.1534/genetics.119.302045
- Hélène Martin; Fantin E Carpentier; Sophie Gallina; Cécile Godé; Eric Schmitt; Aline Muyle; Gabriel Marais; Pascal Touzet.
"Evolution of Young Sex Chromosomes in Two Dioecious Sister Plant Species with Distinct Sex Determination Systems". Genome
Biology and Evolution (2019): https://hal.science/hal-02265377.
10.1093/gbe/evz001
- Aline Muyle; Niklaus Zemp; Cécile Fruchard; Radim Cegan; Jan Vrána; Clothilde Deschamps; Raquel Tavares; et al. "Genomic imprinting
mediates dosage compensation in a young plant XY system". Nature Plants (2018): https://cnrs.hal.science/hal-02347985.
10.1038/s41477-018-0221-y
- Jos Käfer; Andrea Betancourt; Avelyne S. Villain; Marie Fernandez; Clémentine Vignal; Gabriel Marais; Maud Tenaillon. "Progress
and Prospects in Gender Visibility at SMBE Annual Meetings". Genome Biology and Evolution (2018): https://hal.science/hal-02310560.
10.1093/gbe/evy056
- Gabriel Marais; Rebecca Shankland; Pascale Haag; Robin Fiault; Briget Juniper. "A Survey and a Positive Psychology Intervention
on French PhD Student Well-being". International Journal of Doctoral Studies (2018): https://hal.science/hal-02073821.
10.28945/3948
- Gabriel Marais; Sylvain Charlat. "A newly evolved W(olbachia) sex chromosome in pillbug!". Peer Community In Evolutionary
Biology (2017): https://hal.science/hal-01467641.
10.24072/pci.evolbiol.100016
- Jos Käfer; Gabriel Marais; Jr. Pannell. "On the rarity of dioecy in flowering plants". Molecular Ecology (2017): https://hal.science/hal-01943810.
10.1111/mec.14020
- A. Muyle; R. Shearn; Gabriel Marais. "The Evolution of Sex Chromosomes and Dosage Compensation in Plants". Genome Biology
and Evolution (2017): https://hal.science/hal-01943816.
10.1093/gbe/evw282
- N. Zemp; R. Tavares; A. Muyle; D. Charlesworth; Gabriel Marais; A. Widmer. "Evolution of sex-biased gene expression in a dioecious
plant". Nature Plants (2016): https://univ-lyon1.hal.science/hal-02049902.
10.1038/nplants.2016.168
- A. Muyle; Jos Käfer; N. Zemp; S. Mousset; Franck Picard; Gabriel Marais. "SEX-DETector: a probabilistic approach to study
sex chromosomes in non-model organisms". Genome Biology and Evolution (2016): https://univ-lyon1.hal.science/hal-02053627.
10.1093/gbe/evw172
- Nicolas Blavet; Hana Blavet; Aline Muyle; Jos Käfer; Radim Cegan; Clothilde Deschamps; Niklaus Zemp; et al. "Identifying new
sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia". BMC Genomics (2015): https://hal.inrae.fr/hal-02637603.
10.1186/s12864-015-1698-7
- Bérénice Batut; Carole Knibbe; Gabriel Marais; Vincent Daubin. "Reductive genome evolution at both ends of bacterial population
size spectrum". Nature Reviews Microbiology (2014): https://hal.science/hal-01092392.
10.1038/nrmicro3331
- Sophia S. Ahmed; J. Mark Cock; Eugenie Pessia; Remy Luthringer; Alexandre Cormier; Marine Robuchon; Lieven Sterck; et al.
"A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.". Current Biology (2014): https://hal.sorbonne-universite.fr/hal-01132642.
10.1016/j.cub.2014.07.042
- T. Schwander; Gabriel Marais; D. Roze. "Sex uncovered: the evolutionary biology of reproductive systems". Journal of Evolutionary
Biology (2014): https://univ-lyon1.hal.science/hal-02045518.
- E. Pessia; J. Engelstadter; G. Marais. "The evolution of X chromosome inactivation in mammals: the demise of Ohno's hypothesis?".
Cellular and Molecular Life Sciences (2013): https://hal.science/hal-02282695.
10.1007/s00018-013-1499-6
- Eugénie Pessia; Alexandra Popa; Sylvain Mousset; Clément Rezvoy; Laurent Duret; G. Marais. "Evidence for Widespread GC-biased
Gene Conversion in Eukaryotes". Genome Biology and Evolution (2012): https://univ-lyon1.hal.science/hal-02282748.
10.1093/gbe/evs052
- E. Pessia; T. Makino; M. Bailly-Bechet; A. Mclysaght; Gabriel Marais. "Mammalian X chromosome inactivation evolved as a dosage-compensation
mechanism for dosage-sensitive genes on the X chromosome". Proceedings of the National Academy of Sciences of the United
States of America (2012): https://hal.science/hal-00698392.
10.1073/pnas.1116763109
- A. Muyle; N. Zemp; C. Deschamps; Sylvain Mousset; A. Wildmer; Gabriel Marais. "Rapid De Novo Evolution of X Chromosome Dosage
Compensation in Silene latifolia a Plant with Young Sex Chromosomes". PLoS Biology (2012): https://hal.science/hal-00698081.
10.1371/journal.pbio.1001308
- C. Parage; R. Tavares; S. Réty; R. Baltenweck-Guyot; A. Poutaraud; L. Renault; D. Heintz; et al. "Structural, functional and
evolutionary analysis of the unusually large stilbene synthase gene family in grapevine (Vitis vinifera)". Plant Physiology
(2012): https://hal.science/hal-00753657.
- N. Blavet; D. Charif; C. Oger-Desfeux; Gabriel Marais; A. Widmer. "Comparative high-throughput transcriptome sequencing and
development of SiESTa, the \textitSilene EST annotation database". BMC Genomics (2011): https://univ-lyon1.hal.science/hal-02303175.
10.1186/1471-2164-12-376
- Gabriel Marais; A. Forrest; E. Kamau; Jos Käfer; Vincent Daubin; D. Charlesworth. "Multiple Nuclear Gene Phylogenetic Analysis
of the Evolution of Dioecy and Sex Chromosomes in the Genus Silene". PLoS ONE (2011): https://hal.science/hal-00698036.
10.1371/journal.pone.0021915
- Y.E. Zhang; M.D. Vibranovski; P. Landback; Gabriel Marais; M. Long. "Chromosomal Redistribution of Male-Biased Genes in Mammalian
Evolution with Two Bursts of Gene Gain on the X Chromosome". PLoS Biology (2010): https://hal.science/hal-00539515.
10.1371/journal.pbio.1000494
- R. Dubruille; G.A. Orsi; L. Delabaere; E. Cortier; P. Couble; Gabriel Marais; B. Loppin. "Specialization of a Drosophila
Capping Protein Essential for the Protection of Sperm Telomeres". Current Biology (2010): https://hal.science/hal-00698442.
10.1016/j.cub.2010.11.013
- A. Hochwagen; Gabriel Marais. "Meiosis: A PRDM9 Guide to the Hotspots of Recombination". Current Biology (2010): https://hal.science/hal-00539455.
10.1016/j.cub.2010.01.048
- Gabriel Marais; P.R.A. Campos; I. Gordo. "Can Intra-Y Gene Conversion Oppose the Degeneration of the Human Y Chromosome? A
Simulation Study". Genome Biology and Evolution (2010): https://hal.science/hal-00539484.
- Claire Lemaitre; Marília D.V. Braga; Christian Gautier; M.-F. Sagot; Eric Tannier; Gabriel Marais. "Footprints of Inversions
at Present and Past Pseudoautosomal Boundaries in Human Sex Chromosomes". Genome Biology and Evolution (2009): https://hal.science/hal-00428362.
- Md. Moccia; C. Oger-Desfeux; Gabriel Marais; A. Widmer. "A White Campion textit(Silene latifolia) floral expressed sequence
tag (EST) library: annotation EST-SSR characterization transferability and utility for comparative mapping". BMC Genomics
(2009): https://hal.science/hal-00428361.
- G. Bernasconi; J. Antonovics; A. Biere; D. Charlesworth; Lf. Delph; D. Filatov; T. Giraud; et al. "Silene as a model
system in ecology and evolution". Heredity (2009): https://hal.science/hal-00428347.
- Gabriel Marais; L. Duret. "L’évolution des chromosomes sexuels humains". Biofutur (2009): https://hal.science/hal-00539330.
- Gabriel Marais; Michael Nicolas; R. Bergero; Pierre Chambrier; E. Keinovsky; Françoise Moneger; R. Hobza; A. Widmer; D. Charlesworth.
"Evidence for degeneration of the Y chromosome in the dioecious plant Silene latifolia". Current Biology (2008): https://hal.science/hal-00412855.
- Gabriel Marais; M. Nicolas; R. Bergero; P. Chambrier; E. Kejnovsky; F. Monéger; R. Hobza; A. Widmer; D. Charlesworth. "Evidence
for Degeneration of the Y Chromosome in the Dioecious Plant Silene latifolia". Current Biology (2008): https://hal.science/hal-00428084.
- Gabriel Marais. "Sex chromosomes and mitochondrial DNA polymorphism in birds: The Hill–Robertson effects extend from nucleus
to mitochondria". Heredity (2007): https://hal.science/hal-00434819.
- E. Kejnovsky; R. Hobza; Z. Kubat; A. Widmer; Gabriel Marais; B. Vyskot. "High intrachromosomal similarity of retrotransposon
long terminal repeats: Evidence for homogenization by gene conversion on plant sex chromosomes?". Gene (2007): https://hal.science/hal-00434731.
- Gabriel Marais; A. Calteau; O. Tenaillon. "Mutation rate and genome reduction in endosymbiotic and free-living bacteria".
Genetica (2007): https://hal.science/hal-00434820.
- C. Rezvoy; D. Charif; Laurent Guéguen; Gabriel Marais. "MareyMap: an R-based tool with graphical interface for estimating
recombination rates". Bioinformatics (2007): https://hal.science/hal-00434645.
- Yves Clément; Raquel Tavares; Gabriel Marais. "Does lack of recombination enhance asymmetric evolution among duplicate genes?
Insights from the Drosophila melanogaster genome". Gene (2006): https://hal.science/hal-00427925.
10.1016/j.gene.2006.05.032
- Michael Nicolas; Gabriel Marais; Vladka Hykelova; Bohuslav Janousek; Valérie Laporte; Boris Vyskot; Dominique Mouchiroud;
et al. "A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants.".
PLoS Biology (2005): https://hal.science/hal-00188780.
10.1371/journal.pbio.0030004
- D. Charlesworth; B. Charlesworth; Gabriel Marais. "Steps in the evolution of heteromorphic sex chromosomes". Heredity
(2005): https://hal.science/hal-00427860.
- Gabriel Marais; P. Nouvellet; P.D. Keightley; B. Charlesworth. "Intron size and exon evolution in Drosophila". Genetics
(2005): https://hal.science/hal-00427785.
- M. Nicolas; Gabriel Marais; V. Hykelova; B. Janousek; V. Laporte; B. Vyskot; Dominique Mouchiroud; et al. "A gradual process
of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants". PLoS Biology
(2005): https://hal.science/hal-00427796.
- Gabriel Marais; B. Charlesworth; S.I. Wright. "Recombination and base composition: the case of the highly self-fertilizing
plant Arabidopsis thaliana". Genome Biology (2004): https://hal.science/hal-00427687.
- Gabriel Marais; T. Domazet-Loso; D. Tautz; B. Charlesworth. "Correlated evolution of synonymous and nonsynonymous sites in
Drosophila". Journal of Molecular Evolution (2004): https://hal.science/hal-00427623.
- Carène Rizzon; Edwige Martin; Gabriel Marais; Laurent Duret; Laurent Ségalat; Christian Biémont. "Patterns of selection against
transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis
elegans.". Genetics (2003): https://hal.science/hal-00194461.
- C. Rizzon; E. Martin; Gabriel Marais; L. Duret; L. Segalat; C. Biémont. "Patterns of selection against transposons inferred
from the distribution of Tc1 Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans". Genetics
(2003): https://hal.science/hal-00427476.
- Gabriel Marais; Dominique Mouchiroud; L. Duret. "Neutral effect of recombination on base composition in Drosophila". Genetical
Research (2003): https://hal.science/hal-00427447.
- Gabriel Marais. "Biased gene conversion: implications for genome and sex evolution". Trends in Genetics (2003): https://hal.science/hal-00427448.
- C. Rizzon; E. Martin; G. Marais; L. Duret; L. Segalat; C. Biemont. "Patterns of selection against transposons inferred from
the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.". Genetics
(2003): https://hal.science/hal-00144031.
- Gabriel Marais; N. Galtier. "Sex chromosomes: how X-Y recombination stops". Current Biology (2003): https://hal.science/hal-00427446.
- Gabriel Marais; B. Charlesworth. "Genome evolution: recombination speeds up adaptive evolution". Current Biology (2003):
https://hal.science/hal-00427445.
- Gabriel Marais; G. Piganeau. "Hill-Robertson interference is a minor determinant of variations in codon bias across Drosophila
melanogaster and Caenorhabditis elegans genomes". Molecular Biology and Evolution (2002): https://hal.science/hal-00427287.
- C. Rizzon; Gabriel Marais; Manolo Gouy; C. Biémont. "Recombination rate and the distribution of transposable elements in the
Drosophila melanogaster genome". Genome Research (2002): https://hal.science/hal-00427298.
10.1101/gr.210802
- Gabriel Marais; Dominique Mouchiroud; L. Duret. "Does recombination improve selection on codon usage? Lessons from nematode
and fly complete genomes". Proceedings of the National Academy of Sciences of the United States of America (2001):
https://hal.science/hal-00427184.
- Gabriel Marais; L. Duret. "Synonymous codon usage accuracy of translation and gene length in Caenorhabditis elegans". Journal
of Molecular Evolution (2001): https://hal.science/hal-00427183.
- L. Duret; Gabriel Marais; C. Biémont. "Transposons but not retrotransposons are located preferentially in regions of high
recombination rate in Caenorhabditis elegans". Genetics (2000): https://hal.science/hal-00427072.
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