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Mirte Bosse. Completed the Doctor in PhD in 2015/05/22 by Wageningen University & Research. Is Principal Investigator in Wageningen University & Research. Published 30 articles in journals.
Identification

Personal identification

Full name
Mirte Bosse

Citation names

  • Bosse, Mirte

Author identifiers

Ciência ID
0B19-7C58-D9B1
ORCID iD
0000-0003-2433-2483
Education
Degree Classification
2010/10/01 - 2015/05/22
Concluded
 PhD (Doctor)
Wageningen University & Research, Netherlands
"The Hybrid Nature of Pig Genomes" (THESIS/DISSERTATION)
Affiliation

Science

Category
Host institution 		Employer
2016 - Current Principal Investigator (Research) Wageningen University & Research, Netherlands
Projects

Grant

Designation Funders
2018/06/01 - 2022/03/01 What makes inbreeding so depressing?
016.Veni.181.050
Principal investigator
Wageningen University & Research, Netherlands

Vrije Universiteit Amsterdam, Netherlands
Nederlandse Organisatie voor Wetenschappelijk Onderzoek Exacte en Natuurwetenschappen
Ongoing
2015/06/01 - 2018/06/01 From sequence to phenotype: detecting deleterious variation by prediction of functionality
STW_B4F 14283
Post-doc
Wageningen University & Research, Netherlands
Concluded
Outputs

Publications

Journal article
  1. Zhou Wu; Chiara Bortoluzzi; Martijn F. L. Derks; Langqing Liu; Mirte Bosse; Sipke Joost Hiemstra; Martien A. M. Groenen; Richard P. M. A. Crooijmans. "Heterogeneity of a dwarf phenotype in Dutch traditional chicken breeds revealed by genomic analyses". Evolutionary Applications (2021): https://doi.org/10.1111/eva.13183.
    10.1111/eva.13183
  2. Langqing Liu; Mirte Bosse; Hendrik-Jan Megens; Laurent A. F. Frantz; Young-Lim Lee; Evan K. Irving-Pease; Goutam Narayan; Martien A. M. Groenen; Ole Madsen. "Addendum: Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion". Nature Communications (2020): https://doi.org/10.1038/s41467-020-20106-2.
    10.1038/s41467-020-20106-2
  3. Langqing Liu; Mirte Bosse; Hendrik-Jan Megens; Manon de Visser; Martien Groenen; Ole Madsen. "Genetic consequences of long-term small effective population size in the critically endangered pygmy hog". Evolutionary Applications (2020): https://doi.org/10.1111/eva.13150.
    10.1111/eva.13150
  4. Christian Groß; Gregory M. Cooper; Chiara Bortoluzzi; Dick de Ridder; Hendrik-Jan Megens; Martien A. M. Groenen; Marcel Reinders; Mirte Bosse. "Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD". PLOS Genetics 16 9 (2020): e1009027-e1009027. https://doi.org/10.1371/journal.pgen.1009027.
    10.1371/journal.pgen.1009027
  5. Chiara Bortoluzzi; Mirte Bosse; Martijn F. L. Derks; Richard P. M. A. Crooijmans; Martien A. M. Groenen; Hendrik-Jan Megens. "The type of bottleneck matters: Insights into the deleterious variation landscape of small managed populations". Evolutionary Applications (2020): https://doi.org/10.1111/eva.12872.
    10.1111/eva.12872
  6. Langqing Liu; Mirte Bosse; Hendrik-Jan Megens; Laurent A. F. Frantz; Young-Lim Lee; Evan K. Irving-Pease; Goutam Narayan; Martien A. M. Groenen; Ole Madsen. "Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion". Nature Communications 10 1 (2019): https://doi.org/10.1038/s41467-019-10017-2.
    10.1038/s41467-019-10017-2
  7. Maulik Upadhyay; Chiara Bortoluzzi; Mario Barbato; Paolo Ajmone-Marsan; Licia Colli; Catarina Ginja; Tad S. Sonstegard; et al. "Deciphering the patterns of genetic admixture and diversity in southern European cattle using genome-wide SNPs". Evolutionary Applications 12 5 (2019): 951-963. https://doi.org/10.1111/eva.12770.
    10.1111/eva.12770
  8. Mirte Bosse; Lewis G. Spurgin; Veronika N. Laine; Ella F. Cole; Josh A. Firth; Phillip Gienapp; Andrew G. Gosler; et al. "Response to Perrier and Charmantier: On the importance of time scales when studying adaptive evolution". Evolution Letters (2019): https://doi.org/10.1002/evl3.112.
    10.1002/evl3.112
  9. Mirte Bosse; Tosso Leeb. "No “doom” in chicken domestication?". PLOS Genetics (2019): https://doi.org/10.1371/journal.pgen.1008089.
    10.1371/journal.pgen.1008089
  10. Martijn F. L. Derks; Tosso Leeb; Arne B. Gjuvsland; Mirte Bosse; Marcos S. Lopes; Maren van Son; Barbara Harlizius; et al. "Loss of function mutations in essential genes cause embryonic lethality in pigs". PLOS Genetics 15 3 (2019): e1008055-e1008055. https://doi.org/10.1371/journal.pgen.1008055.
    10.1371/journal.pgen.1008055
  11. Mirte Bosse; Hendrik-Jan Megens; Martijn F. L. Derks; Ángeles M. R. Cara; Martien A. M. Groenen. "Deleterious alleles in the context of domestication, inbreeding, and selection". Evolutionary Applications 12 1 (2019): 6-17. https://doi.org/10.1111/eva.12691.
    10.1111/eva.12691
  12. Mirte Bosse; Lewis G. Spurgin; Veronika N. Laine; Ella F. Cole; Josh A. Firth; Phillip Gienapp; Andrew G. Gosler; et al. "Recent natural selection causes adaptive evolution of an avian polygenic trait". Science (2017): https://doi.org/10.1126/science.aal3298.
    10.1126/science.aal3298
  13. Juan E Pérez-Jaramillo; Víctor J Carrión; Mirte Bosse; Luiz F V Ferrão; Mattias de Hollander; Antonio A F Garcia; Camilo A Ramírez; Rodrigo Mendes; Jos M Raaijmakers. "Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits". The ISME Journal 11 10 (2017): 2244-2257. https://doi.org/10.1038/ismej.2017.85.
    10.1038/ismej.2017.85
  14. Nuijten, R.J.M.; Bosse, M.; Crooijmans, R.P.M.A.; Madsen, O.; Schaftenaar, W.; Ryder, O.A.; Groenen, M.A.M.; Megens, H.-J.. "The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons)". International Journal of Genomics 2016 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84962839166&partnerID=MN8TOARS.
    10.1155/2016/5613862
  15. Bosse, M.; Lopes, M.S.; Madsen, O.; Megens, H.-J.; Crooijmans, R.P.M.A.; Frantz, L.A.F.; Harlizius, B.; Bastiaansen, J.W.M.; Groenen, M.A.M.. "Artificial selection on introduced Asian haplotypes shaped the genetic architecture in european commercial pigs". Proceedings of the Royal Society B: Biological Sciences 282 1821 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84951912790&partnerID=MN8TOARS.
    10.1098/rspb.2015.2019
  16. Zhang, Q.; Guldbrandtsen, B.; Bosse, M.; Lund, M.S.; Sahana, G.. "Runs of homozygosity and distribution of functional variants in the cattle genome". BMC Genomics 16 1 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84937717009&partnerID=MN8TOARS.
    10.1186/s12864-015-1715-x
  17. Paudel, Y.; Madsen, O.; Megens, H.-J.; Frantz, L.A.F.; Bosse, M.; Crooijmans, R.P.M.A.; Groenen, M.A.M.. "Copy number variation in the speciation of pigs: A possible prominent role for olfactory receptors". BMC Genomics 16 1 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84928564071&partnerID=MN8TOARS.
    10.1186/s12864-015-1449-9
  18. Frantz, L.A.F.; Madsen, O.; Megens, H.-J.; Schraiber, J.G.; Paudel, Y.; Bosse, M.; Crooijmans, R.P.M.A.; Larson, G.; Groenen, M.A.M.. "Evolution of Tibetan wild boars". Nature Genetics 47 3 (2015): 188-189. http://www.scopus.com/inward/record.url?eid=2-s2.0-84924001236&partnerID=MN8TOARS.
    10.1038/ng.3197
  19. Frantz, L.A.F.; Schraiber, J.G.; Madsen, O.; Megens, H.-J.; Cagan, A.; Bosse, M.; Paudel, Y.; et al. "Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes". Nature Genetics 47 10 (2015): 1141-1148. http://www.scopus.com/inward/record.url?eid=2-s2.0-84942985288&partnerID=MN8TOARS.
    10.1038/ng.3394
  20. Bosse, M.; Megens, H.-J.; Madsen, O.; Crooijmans, R.P.M.A.; Ryder, O.A.; Austerlitz, F.; Groenen, M.A.M.; De Cara, M.A.R.. "Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations". Genome Research 25 7 (2015): 970-981. http://www.scopus.com/inward/record.url?eid=2-s2.0-84937029830&partnerID=MN8TOARS.
    10.1101/gr.187039.114
  21. Bosse, M.; Megens, H.-J.; Madsen, O.; Frantz, L.A.F.; Paudel, Y.; Crooijmans, R.P.M.A.; Groenen, M.A.M.. "Untangling the hybrid nature of modern pig genomes: A mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations". Molecular Ecology 23 16 (2014): 4089-4102. http://www.scopus.com/inward/record.url?eid=2-s2.0-84905494162&partnerID=MN8TOARS.
    10.1111/mec.12807
  22. Herrero-Medrano, J.M.; Megens, H.-J.; Groenen, M.A.M.; Bosse, M.; Pérez-Enciso, M.; Crooijmans, R.P.M.A.. "Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds". BMC Genomics 15 1 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84904272526&partnerID=MN8TOARS.
    10.1186/1471-2164-15-601
  23. Bosse, M.; Madsen, O.; Megens, H.-J.; Frantz, L.A.F.; Paudel, Y.; Crooijmans, R.P.M.A.; Groenen, M.A.M.. "Hybrid origin of European commercial pigs examined by an in-depth haplotype analysis on chromosome 1". Frontiers in Genetics 5 DEC (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84917695696&partnerID=MN8TOARS.
    10.3389/fgene.2014.00442
  24. Bosse, M.; Megens, H.-J.; Frantz, L.A.F.; Madsen, O.; Larson, G.; Paudel, Y.; Duijvesteijn, N.; et al. "Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression". Nature Communications 5 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84904497026&partnerID=MN8TOARS.
    10.1038/ncomms5392
  25. Herrero-Medrano, J.M.; Megens, H.-J.; Groenen, M.A.M.; Ramis, G.; Bosse, M.; Pérez-Enciso, M.; Crooijmans, R.P.M.A.. "Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula". BMC Genetics 14 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84887380604&partnerID=MN8TOARS.
    10.1186/1471-2156-14-106
  26. Frantz, L.A.F.; Schraiber, J.G.; Madsen, O.; Megens, H.-J.; Bosse, M.; Paudel, Y.; Semiadi, G.; et al. "Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus". Genome Biology 14 9 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84884581710&partnerID=MN8TOARS.
    10.1186/gb-2013-14-9-r107
  27. Paudel, Y.; Madsen, O.; Megens, H.-J.; Frantz, L.A.F.; Bosse, M.; Bastiaansen, J.W.M.; Crooijmans, R.P.M.A.; Groenen, M.A.M.. "Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication". BMC Genomics 14 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84879835308&partnerID=MN8TOARS.
    10.1186/1471-2164-14-449
  28. Groenen, M.A.M.; Archibald, A.L.; Uenishi, H.; Tuggle, C.K.; Takeuchi, Y.; Rothschild, M.F.; Rogel-Gaillard, C.; et al. "Analyses of pig genomes provide insight into porcine demography and evolution". Nature 491 7424 (2012): 393-398. http://www.scopus.com/inward/record.url?eid=2-s2.0-84869003221&partnerID=MN8TOARS.
    10.1038/nature11622
  29. Bosse, M.; Megens, H.-J.; Madsen, O.; Paudel, Y.; Frantz, L.A.F.; Schook, L.B.; Crooijmans, R.P.M.A.; Groenen, M.A.M.. "Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape". PLoS Genetics 8 11 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84869031473&partnerID=MN8TOARS.
    10.1371/journal.pgen.1003100
  30. Nota, B.; Bosse, M.; Ylstra, B.; van Straalen, N.M.; Roelofs, D.. "Transcriptomics reveals extensive inducible biotransformation in the soil-dwelling invertebrate Folsomia candida exposed to phenanthrene". BMC Genomics 10 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-66349098339&partnerID=MN8TOARS.
    10.1186/1471-2164-10-236