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Afonso Almeida graduated in Biology (Fac. Ciências- U.Porto-1996) and obtained his PhD in Immunology (ICBAS-U. Porto-2002) from his work on T cell homeostasis performed at the Pasteur Institute (Paris-France). He worked on thymic T cell export but also took part in regulatory T cell resurgence, demonstrating the role of IL2 in CD4+CD25+ Treg homeostasis. He moved next to the Institute for Research in Biomedicine, Switzerland, in order to establish his own line of research studying CD4/CD8 T cell interactions and later to the Instituto de Medicina Molecular, in Lisbon, to study the completely novel role of neurotrophic factors in T cell development and function. He moved on to adapt fundamental immunology, developing cellular immunotherapy (co-author in the pending patent) while joining the StartUP Lymphact, and after that he worked in Leukemia, dissecting the role of mutated IL-7R in leukemogenesis and leukemia growth. All his experience is at present time applied in his current position, as Assistant Professor in Clinical Immunology at the Faculty of Medicine of Univ. Lisboa and as a researcher in Clinical Immunology at the Gulbenkian Institute for Molecular Medicine (GIMM). With 25 publications and a filed patent, he was productive in diverse but connected themes, using diverse methodologies. With 1928 citations and an h-index of 17 Afonso Almeida gained a reputation in the field, the basis for a regular contribution as a reviewer in several journals and invitation to teach in post-graduate programs. He is actively involved in teaching master's and PhD students, adding to his role as assistant professor in the formation of MDs and scientists.
Identification

Personal identification

Full name
Afonso Rocha Martins de Almeida

Citation names

  • Almeida, Afonso
  • Afonso RM Almeida

Author identifiers

Ciência ID
081E-39B1-1041
ORCID iD
0000-0002-4292-8558
Google Scholar ID
https://scholar.google.pt/citations?hl=en&user=3E19ECwAAAAJ

Email addresses

  • afonso.almeida@medicina.ulisboa.pt (Professional)
  • afonsalmeida@gmail.com (Personal)

Telephones

Mobile phone
  • 916499400 (Personal)
Telephone
  • 217999411 Ext.: 47371 (Professional)

Addresses

  • Edificio Egas Moniz, Av Prof. Egas Moniz, 1649-028 L, Lisboa, Lisboa, Portugal (Professional)
  • Rua Prof. Veiga Beirão, nº8, 3º A, 1700-319, Lisboa, Lisboa, Portugal (Personal)

Websites

Knowledge fields

  • Medical and Health Sciences - Basic Medicine - Immunology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
French Advanced (C1) Advanced (C1) Upper intermediate (B2) Advanced (C1) Upper intermediate (B2)
Italian Intermediate (B1) Upper intermediate (B2) Elementary (A2) Intermediate (B1) Elementary (A2)
Spanish; Castilian Intermediate (B1) Upper intermediate (B2) Beginner (A1) Intermediate (B1) Intermediate (B1)
Education
Degree Classification
2013/02/13
Concluded
Federation of European Laboratory Animal Science Associations (FELASA)- Category B+C- Investigator/Coordinator accreditation (Outros)
Direção Geral de Veterinária, Portugal
2002/11/15
Concluded
Imunologia (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
"CD4+ T cell Homeostasis: The Thymus, The cells and the Environment" (THESIS/DISSERTATION)
Aprovado por Unanimidade
1996/07/03
Concluded
Biologia (Licenciatura)
Major in Cientifico-Tecnológico
Universidade do Porto Faculdade de Ciências, Portugal
14
Affiliation

Science

Category
Host institution
Employer
2024/10/01 - Current Researcher (Research) Gulbenkian Institute for Molecular Medicine, Portugal
2019/11/17 - 2024/10/01 Researcher (Research) Instituto de Medicina Molecular -João Lobo Antunes (iMM-JLA)., Portugal
Laboratório de Imunologia Clínica. Driector: Prof. Ana Espada Sousa, Portugal
2015/10/01 - 2019/11/16 Researcher (Research) Instituto de Medicina Molecular -João Lobo Antunes (iMM-JLA)., Portugal
Signaling in Cancer Unit. Director: Prof. João Barata, Portugal
2015/07/01 - 2015/09/30 Postdoc (Research) Instituto de Medicina Molecular, Portugal
T cell Differentiation & Tumor Targeting Unit. Director: Prof. Bruno Silva-Santos, Portugal
2014/07/01 - 2015/06/30 Postdoc (Research) Lymphact, Portugal
Lymphact, Portugal
2008/10/01 - 2014/06/30 Postdoc (Research) Instituto de Medicina Molecular, Portugal
Immunobiology Unit. Director: Dr. Henrique Veiga-Fernandes., Portugal
2005/01/01 - 2008/09/30 Postdoc (Research) Istituto di Ricerca in Biomedicina, Switzerland
Immune Regulation Unit. Director: Prof. Antonio Lanzavecchia, Switzerland
2003/01/01 - 2004/12/31 Postdoc (Research) Institut Pasteur, France
Lymphocyte Population Biology Unit. Director: Prof. António A. Freitas, France

Teaching in Higher Education

Category
Host institution
Employer
2019/11/17 - Current Assistant Professor (University Teacher) Universidade de Lisboa Faculdade de Medicina, Portugal
Laboratório de Imunologia Clínica. Driector: Prof. Ana Espada Sousa, Portugal

Other Careers

Category
Host institution
Employer
1995/10/01 - 1996/06/30 Professor do ensino básico e secundário (Professor do ensino básico e secundário) Ministério da Educação, Portugal

Others

Category
Host institution
Employer
1997/09/08 - 2002/11/15 Doutorando Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
Institut Pasteur, France
Projects

Grant

Designation Funders
2020/06/30 - 2021/06/01 COVID-19 prognosis: innate immune determinants
803
Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing

Contract

Designation Funders
2025/03/01 - 2025/12/31 Heterogeneity within the Human Naïve CD4 T cell pool: a view from the Thymus.
2025p028
Principal investigator
Universidade de Lisboa Faculdade de Medicina, Portugal
Ongoing
2024/03/01 - 2024/12/31 CD8+ Regulatory T Cells in the Human Thymus
20240013
Principal investigator
Universidade de Lisboa Faculdade de Medicina, Portugal
Concluded
2021/03/29 - 2024/03/28 Targeting naïve CD4 T cells to avoid human immunodeficiency
PTDC/MED-IMU/0938/2020
Co-Principal Investigator (Co-PI)
Fundação para a Ciência e a Tecnologia
2021/03/01 - 2021/12/31 RANK expression in human peripheral Treg cells
20210018
Principal investigator
Universidade de Lisboa Faculdade de Medicina, Portugal
Concluded
2020/06/01 - 2021/05/31 Harnessing Follicular Helper T Cells to Control HIV
PTDC/MECHEM/ 31588/2017
Post-doc
Instituto de Medicina Molecular -João Lobo Antunes (iMM-JLA)., Portugal
Concluded
2018/06/01 - 2021/05/31 Descodificar a interacção entre CK2, PI3K e o relógio molecular circadiano para melhor compreender a biologia e maximizar respostas terapêuticas dirigidas contra leucemia de células T.
PTDC/MEC-HEM/31588/2017
Post-doc
Instituto de Medicina Molecular, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2020/06/01 - 2020/12/31 Projeto n. 803, COVID-19 prognosis: innate immune determinants
Projeto n. 803, COVID-19 prognosis: innate immune determinants
Post-doc
Instituto de Medicina Molecular -João Lobo Antunes (iMM-JLA)., Portugal
Concluded
2020/05/01 - 2020/08/01 COVID-19 pneumonia outcome: an immunological approach
Projeto n. 125, COVID-19 pneumonia outcome: na immunological approach
Post-doc
Instituto de Medicina Molecular -João Lobo Antunes (iMM-JLA)., Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
Outputs

Publications

Conference abstract
  1. Trombetta AC; B. Farias, Guilherme; Godinho-Santos, Ana; Gomes, AMC; Rosmaninho, Pedro; Conceição CM; Joel Laia; et al. "SARS-CoV-2 plasma viral load polarizes the systemic myeloid cell compartment towards an immunosuppressive/regulatory phenotype in severe COVID-19 patients". Paper presented in Virtual IMMUNOLOGY 2021, 2021.
  2. Trombetta AC; Guilherme Farias; Ana Godinho-Santos; Gomes, AMC; Rosmaninho, Pedro; Carolina M. Conceição; Joel Laia; et al. "Timely acquisition of myeloid cell immune-regulatory phenotype and COVID-19 outcome". Paper presented in Conference on Retroviruses and Opportunistic Infections 2021, 2021.
    Submitted
  3. Gomes, AMC; Joel Laia; Guilherme Farias; Ana Godinho-Santos; Diana F Santos; Rosmaninho, Pedro; Carolina M. Conceição; et al. "Role of Innate Lymphoid Cells in COVID-19". Paper presented in Conference on Retroviruses and Opportunistic Infections 2021, 2021.
Conference poster
  1. Moleirinho, Beatriz; Paulo-Pedro, Margarida; Martins, Nicole C.; JELAGAT, EMILY; Conti, Eller; Afonso RM Almeida; Ana Espada de Sousa. "Profiling the Regulatory T cells in the Human Thymus using a combined High-Dimensional Panel for Spectral Flow Cytometry". Paper presented in 13th ESLHO Symposium: Multi-omics approaches for diagnosis and monitoring of hematological malignancies, 2024.
  2. Moleirinho, Beatriz; Paulo-Pedro, Margarida; Diana F Santos; Gomes, Andre Miguel Carapinha; Susana Lopes-da-Silva; Afonso RM Almeida; Ana Espada de Sousa. "Thymectomy in early childhood: probing 30 years of CD4 T-Cell resilience". Paper presented in 13th ESLHO Symposium: Multi-omics approaches for diagnosis and monitoring of hematological malignancies, 2024.
  3. Diana F Santos; Paulo-Pedro, Margarida; Moleirinho, Beatriz; Gomes, Andre Miguel Carapinha; Afonso RM Almeida; Markert, L.M.; J.G., Marques; Susana Lopes-da-Silva; Ana Espada de Sousa. "Thymus Transplantation in FOXN1 Deficiency: 17 years Follow-up revealed Lack of Naïve T-Cell Sustainability despite Clinical Success". Paper presented in 13th ESLHO Symposium: Multi-omics approaches for diagnosis and monitoring of hematological malignancies, 2024.
  4. Paulo-Pedro, Margarida; Moleirinho, Beatriz; Diana F Santos; Gomes, Andre Miguel Carapinha; Susana Lopes-da-Silva; Afonso RM Almeida; Ana Espada de Sousa. "The T-Cell Compartment 17 Years Post Allogeneic Thymus Transplantation in a Patient with FOXN1 Mutation". Paper presented in ThymE 24: T Cell & Thymus Biology, 2024.
  5. Conti, Eller; Rosmaninho, Pedro; Moleirinho, Beatriz; Marques, Madalena; Afonso RM Almeida; Ana Espada de Sousa; Raposo, AASF. "Chromatin Landscapes Controlling CD8 Regulatory T Cells in The Human Thymus". Paper presented in ThymE 24: T Cell & Thymus Biology, 2024.
  6. Conti, Eller; Rosmaninho, Pedro; Moleirinho, Beatriz; Marques, Madalena; Afonso RM Almeida; Ana Espada de Sousa; Raposo, AASF. "Defining a CD8 Regulatory T Cell Lineage in The Human Thymus". Paper presented in 17th ENII EFIS EJI Summer School on Advanced Immunology, 2024.
  7. Paulo-Pedro, Margarida; Moleirinho, Beatriz; Diana F Santos; Gomes, Andre Miguel Carapinha; Susana Lopes-da-Silva; Raposo, AASF; Afonso RM Almeida; Ana Espada de Sousa. "The T-cell compartment at a single-cell level 17 years post thymus transplantation in a patient with FOXN1 mutation". Paper presented in SPI’49 XLIX Annual Meeting Portuguese Society for Immunology, 2024.
  8. Paulo-Pedro, Margarida; Martins, Nicole C.; Moleirinho, Beatriz; JELAGAT, EMILY; Afonso RM Almeida; Ana Espada de Sousa. "Regulatory T cells in the Human Thymus: A Combined High Dimensional Panel for Spectral Flow Cytometry Profiling". Paper presented in SPI’49 XLIX Annual Meeting Portuguese Society for Immunology, 2024.
  9. Ferreira, Manuela; Sílvia Madeira-Arroz; Ana Raquel Silva; BASTOS-AMADOR, PATRICIA; Bruno Raposo; Oliveira-Machado, Tomás; Diogo Vieira da Silva ; et al. Corresponding author: Ferreira, Manuela. "Unravelling the role of retinoic acid-controlled Hes1 in iNKT cells". Paper presented in XLIX - Annual Meeting of the Portuguese Society for Immunology, 2024.
  10. Paulo-Pedro, Margarida; Moleirinho, Beatriz; Santos, Diana F; Gomes, Andre Miguel Carapinha; Susana Lopes-da-Silva; Afonso RM Almeida; Ana E Sousa. "Once upon Athymia: the T-cell pool a patient with FOXN1 mutation, 17 years post-thymic transplant". Paper presented in 3rd Symposium of the National Research Infrastructure for Genome Sequencing and Analysis, 2023.
  11. Moleirinho, Beatriz; Paulo-Pedro, Margarida; Diana F Santos; Gomes, Andre Miguel Carapinha; Susana Lopes-da-Silva; Afonso RM Almeida; Ana E Sousa. "Living without a Thymus: Impact on CD4 T cell compartment". Paper presented in 3rd Symposium of the National Research Infrastructure for Genome Sequencing and Analysis, 2023.
  12. Raposo, AASF; Rosmaninho, Pedro; PAÇO, SUSANA; Ângelo-Dias, M; Godinho-Santos, Ana; Nunes-Cabaço, Helena; Tokunaga-Mizoro, Yumie; et al. "Differential Binding in human thymic regulatory T cells refine whole-genome analyses of complex immune diseases". Paper presented in XLVIII Annual Meeting of the Portuguese Society for Immunology, 2023.
  13. Guilherme B. Farias; André MC Gomes; Ana Godinho-Santos; Pedro Rosmaninho; Diana F. Santos; Carolina M. Conceiçao; Joel Laia; et al. "Distinct profile of the sistemic myeloid cell response in HIV-1 and SARS-CoV-2 acute infections". Paper presented in SPI annual meeting 2021, 2021.
  14. B. Farias, Guilherme; Gomes, AMC; Godinho-Santos, Ana; Rosmaninho, Pedro; Santos, Diana F; Conceição CM; Joel Laia; et al. "Distinct profile of the systemic myeloid cell response in HIV-1 and SARS-CoV-2 acute infections.". Paper presented in XLVI Annual Meeting of the Portuguese Society for Immunology, 2021.
  15. André MC Gomes; Guilherme B. Farias; Manuel Dias-Silva; Joel Laia; Amelia C. Trombetta; Ana Godinho-Santos; Pedro Rosmaninho; et al.. "SARS-CoV-2 Pneumonia Recovery is Linked to an Expansion of type 2 Innate Lymphoid Cells Expressing CCR10". 2021.
  16. Amelia Chiara Trombetta; Guilherme B. Farias; Ana Godinho-Santos; Gomes, AMC; Pedro Mota Prego Rosmaninho; Carolina M. Conceicao; Júlio Joel Laia Henrique; et al. "SARS-CoV-2 Plasma Viral Load Polarizes the Systemic Myeloid Cells Compartment Towards an Immunosupressive/Regulatory Phenotype in Severe COVID-19 Patients". Paper presented in The American Association of Immunologists Virtual Immunology 2021, 2021.
  17. Amelia Chiara Trombetta; Guilherme B. Farias; André MC Gomes; Ana Godinho-Santos; Pedro Mota Prego Rosmaninho; Carolina M. Conceiçao; Júlio Joel Laia Henrique; et al. "Timely Acquisition of a Myeloid-Cell Immuno-regulatory Phenotype and COVID-19 Outcome". Paper presented in Conference on Retroviruses and Opportunistic Infections, 2021.
  18. Marta B Fernandes; Melão, Alice; Almeida, Afonso; Pyne, Susan; Pyne, Nigel J; Barata, João T.. "Sphingosine Kinases are key effectors of IL-7-mediated leukemia expansion". Paper presented in EACR-AACR-ASPIC conference on Tumor Microenvironment, 2020.
Journal article
  1. Paulo-Pedro, Margarida; Moleirinho, Beatriz; Santos, Diana F.; Gomes, André M.C.; Rei, Margarida; Almeida, Afonso R.M.; Marques, José G.; Silva, Susana L.; Sousa, Ana E.. "Adulthood outcomes of thymic transplantation in a case of congenital athymia due to FOXN1 mutation". Journal of Allergy and Clinical Immunology (2025): https://doi.org/10.1016/j.jaci.2025.02.006.
    10.1016/j.jaci.2025.02.006
  2. Moleirinho, Beatriz; Paulo-Pedro, Margarida; Martins, Nicole C.; JELAGAT, EMILY; Conti, Eller; Velho, Tiago R.; Miguel Abecasis; et al. Corresponding author: Afonso RM Almeida. "A backbone-based flow cytometry approach to decipher regulatory T cell trajectories in the human thymus". Frontiers in Immunology (2025):
    Accepted
  3. Raposo, Alexandre A. S. F.; Rosmaninho, Pedro; Silva, Susana L.; Paço, Susana; Brazão, Maria E.; Godinho-Santos, Ana; Tokunaga-Mizoro, Yumie; et al. "Decoding mutational hotspots in human disease through the gene modules governing thymic regulatory T cells". Frontiers in Immunology 15 (2024): https://doi.org/10.3389/fimmu.2024.1458581.
    10.3389/fimmu.2024.1458581
  4. Sumaria, N.; Fiala, G.J.; Inácio, D.; Curado-Avelar, M.; Cachucho, A.; Pinheiro, R.; Wiesheu, R.; et al. "Perinatal thymic-derived CD8aß-expressing ¿d T cells are innate IFN-¿ producers that expand in IL-7R–STAT5B-driven neoplasms". Nature Immunology 25 7 (2024): 1207-1217. http://www.scopus.com/inward/record.url?eid=2-s2.0-85194577092&partnerID=MN8TOARS.
    Accepted • 10.1038/s41590-024-01855-4
  5. Manuel M. Vicente; Inês Alves; Ângela Fernandes; Ana M. Dias; Beatriz Santos-Pereira; Elena Pérez-Anton; Sofia Santos; et al. "Mannosylated glycans impair normal T-cell development by reprogramming commitment and repertoire diversity". Cellular & Molecular Immunology (2023): http://dx.doi.org/10.1038/s41423-023-01052-7.
    10.1038/s41423-023-01052-7
  6. Almeida, Afonso R. M.; Neto, João L.; Cachucho, Ana; Euzébio, Mayara; Meng, Xiangyu; Kim, Rathana; Fernandes, Marta B.; et al. "Interleukin-7 receptor a mutational activation can initiate precursor B-cell acute lymphoblastic leukemia". Nature Communications 12 1 (2021): https://doi.org/10.1038/s41467-021-27197-5.
    10.1038/s41467-021-27197-5
  7. Guilherme B. Farias; Robert Badura; Carolina M. Conceição; André M. C. Gomes; Ana Godinho-Santos; Joel Laia; Pedro Rosmaninho; et al. "Acute HIV-1 and SARS-CoV-2 Infections Share Slan+ Monocyte Depletion—Evidence from an Hyperacute HIV-1 Case Report". Viruses 13 9 (2021): 1805-1805. https://doi.org/10.3390/v13091805.
    10.3390/v13091805
  8. Silva, Ana; Almeida, Afonso R. M.; Cachucho, Ana; Neto, João L.; Demeyer, Sofie; de Matos, Mafalda; Hogan, Thea; et al. "Overexpression of wild-type IL-7Ra promotes T-cell acute lymphoblastic leukemia/lymphoma". Blood 138 12 (2021): 1040-1052. https://doi.org/10.1182/blood.2019000553.
    10.1182/blood.2019000553
  9. Gomes, A.M.C.; Farias, G.B.; Dias-Silva, M.; Laia, J.; Trombetta, A.C.; Godinho-Santos, A.; Rosmaninho, P.; et al. "SARS-CoV2 pneumonia recovery is linked to expansion of innate lymphoid cells type 2 expressing CCR10". European Journal of Immunology 51 12 (2021): 3194-3201. http://www.scopus.com/inward/record.url?eid=2-s2.0-85117485471&partnerID=MN8TOARS.
    10.1002/eji.202149311
  10. Trombetta, A.C.; Farias, G.B.; Gomes, A.M.C.; Godinho-Santos, A.; Rosmaninho, P.; Conceição, C.M.; Laia, J.; et al. "Severe COVID-19 Recovery Is Associated with Timely Acquisition of a Myeloid Cell Immune-Regulatory Phenotype". Frontiers in Immunology 12 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85109736209&partnerID=MN8TOARS.
    10.3389/fimmu.2021.691725
  11. De Smedt, Renate; Morscio, Julie; Reunes, Lindy; Roels, Juliette; Bardelli, Valentina; Lintermans, Beatrice; Van Loocke, Wouter; et al. "Targeting cytokine and therapy induced PIM1 activation in T-cell acute lymphoblastic leukemia and lymphoma". Blood (2020): http://dx.doi.org/10.1182/blood.2019003880.
    10.1182/blood.2019003880
  12. Oliveira, M.L.; Akkapeddi, P.; Alcobia, I.; Almeida, A.R.; Cardoso, B.A.; Fragoso, R.; Serafim, T.L.; Barata, J.T.. "From the outside, from within: Biological and therapeutic relevance of signal transduction in T-cell acute lymphoblastic leukemia". Cellular Signalling 38 (2017): 10-25. http://www.scopus.com/inward/record.url?eid=2-s2.0-85021247666&partnerID=MN8TOARS.
    10.1016/j.cellsig.2017.06.011
  13. Almeida, Afonso R.; Correia, Daniel V.; Fernandes-Platzgummer, Ana; da Silva, Cláudia L.; da Silva, Maria Gomes; Anjos, Diogo Remechido; Silva-Santos, Bruno. "Delta One T Cells for Immunotherapy of Chronic Lymphocytic Leukemia: Clinical-Grade Expansion/Differentiation and Preclinical Proof of Concept". Clinical Cancer Research 22 23 (2016): 5795-5804. https://doi.org/10.1158/1078-0432.ccr-16-0597.
    10.1158/1078-0432.ccr-16-0597
  14. Almeida AR; Fonseca-Pereira D; Arroz-Madeira S; Ribeiro H; Labão-Almeida C; Veiga-Fernandes H. "The neurotrophic factor receptor RET regulates IL-10 production by in vitro polarised T helper 2 cells.". (2014): http://europepmc.org/abstract/med/25168352.
    10.1002/eji.201344422
  15. Fonseca-Pereira, D.; Arroz-Madeira, S.; Rodrigues-Campos, M.; Barbosa, I.A.; Domingues, R.G.; Bento, T.; Almeida, A.R.; et al. "The neurotrophic factor receptor RET drives haematopoietic stem cell survival and function.". Nature 514 7520 (2014): 98-101. http://www.scopus.com/inward/record.url?eid=2-s2.0-84908019053&partnerID=MN8TOARS.
    10.1038/nature13498
  16. Almeidal, A.R.M.; Amado, I.F.; Reynolds, J.; Berges, J.; Lythe, G.; Molina-París, C.; Freitas, A.A.. "Quorum-sensing in cD4+t cell homeostasis: A hypothesis and a model". Frontiers in Immunology 3 MAY (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84871833659&partnerID=MN8TOARS.
    10.3389/fimmu.2012.00125
  17. Almeida, A.R.M.; Arroz-Madeira, S.; Fonseca-Pereira, D.; Ribeiro, H.; Lasrado, R.; Pachnis, V.; Veiga-Fernandes, H.. "RET/GFRa Signals Are Dispensable for Thymic T Cell Development In Vivo". PLoS ONE 7 12 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84871649026&partnerID=MN8TOARS.
    10.1371/journal.pone.0052949
  18. Zaragoza, B.; Evaristo, C.; Kissenpfennig, A.; Libri, V.; Malissen, B.; Rocha, B.; Freitas, A.A.; Almeida, A.R.M.. "Cell-to-cell interactions and signals involved in the reconstitution of peripheral CD8+ TCM and TEM cell pools". PLoS ONE 6 3 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79952651279&partnerID=MN8TOARS.
    10.1371/journal.pone.0017423
  19. Almeida, A.R.M.; Ciernik, I.F.; Sallusto, F.; Lanzavecchia, A.. "CD4+CD25+ Treg regulate the contribution of CD8+ T-cell subsets in repopulation of the lymphopenic environment". European Journal of Immunology 40 12 (2010): 3478-3488. http://www.scopus.com/inward/record.url?eid=2-s2.0-78649537075&partnerID=MN8TOARS.
    10.1002/eji.201040600
  20. Almeida, A.R.M.; Zaragoza, B.; Freitas, A.A.. "Indexation as a novel mechanism of lymphocyte homeostasis: The number of CD4+CD25+ regulatory T cells is indexed to the number of IL-2-producing cells". Journal of Immunology 177 1 (2006): 192-200. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745296472&partnerID=MN8TOARS.
    10.4049/jimmunol.177.1.192
  21. Almeida, A.R.M.; Zaragoza, B.; Freitas, A.A.. "Competition controls the rate of transition between the peripheral pools of CD4+CD25- and CD4+CD25+ T cells". International Immunology 18 11 (2006): 1607-1613. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750214514&partnerID=MN8TOARS.
    10.1093/intimm/dxl093
  22. Almeida, A.R.M.; Rocha, B.; Freitas, A.A.; Tanchot, C.. "Homeostasis of T cell numbers: From thymus production to peripheral compartmentalization and the indexation of regulatory T cells". Seminars in Immunology 17 3 (2005): 239-249. http://www.scopus.com/inward/record.url?eid=2-s2.0-16844383898&partnerID=MN8TOARS.
    10.1016/j.smim.2005.02.002
  23. Almeida, A.R.M.; Legrand, N.; Papiernik, M.; Freitas, A.A.. "Homeostasis of peripheral CD4+ T cells: IL-2Ra and IL-2 shape a population of regulatory cells that controls CD4+ T cell numbers". Journal of Immunology 169 9 (2002): 4850-4860. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036839102&partnerID=MN8TOARS.
  24. Almeida, A.R.M.; Borghans, J.A.M.; Freitas, A.A.. "T cell homeostasis: Thymus regeneration and peripheral T cell restoration in mice with a reduced fraction of competent precursors". Journal of Experimental Medicine 194 5 (2001): 591-599. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035801476&partnerID=MN8TOARS.
    10.1084/jem.194.5.591
Preprint
  1. Alexandre A. S. F. Raposo; Pedro Rosmaninho; Susana L. Silva; Susana Paço; Maria E. Brazão; Ana Godinho-Santos; Yumie Tokunaga; et al. "Decoding mutational hotspots in human disease through the gene modules governing thymic regulatory T cells". 2023. https://doi.org/10.1101/2023.12.27.573411.
    10.1101/2023.12.27.573411
  2. Jan Stuchly; David Novak; Nadezda Brdickova; Petra Hadlova; Ahmad Iksi; Daniela Kuzilkova; Michael Svaton; et al. "Deconstructing Complexity: A Computational Topology Approach to Trajectory Inference in the Human Thymus withtviblindi". 2023. http://dx.doi.org/10.1101/2023.07.13.547329.
    10.1101/2023.07.13.547329
  3. "N-glycans mannosylation controls T-cell development by reprogramming thymocyte commitment, fate and repertoire". 2022. http://dx.doi.org/10.1101/2022.02.04.22270265.
    10.1101/2022.02.04.22270265

Intellectual property

Provisional application for patent
  1. 2016. "Methods for the production of tcr gamma delta + t cells".
    Disclosed
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2023/07/06 Human Thymic Treg Development iMM-Infinity Immunology Retreat
(Arrábida, Portugal)
2023/04/12 Developing strategies to achieve immunocompetence IMM Internal Seninars
Instituto de Medicina Molecular João Lobo Antunes (Lisboa, Portugal)
2021/05/08 IL7R Gain-of-Function Mutation Is Sufficient to Initiate B-Cell Acute Lymphoblastic Leukemia In Vivo with Features of PAX5 P80R and Ph-like ALL. ESH 2nd Translational Research Conference on Acute Lymphoblastic Leukaemia.
European Society of Hematology
2020/03/03 High IL-7-IL7Ra signals promote T cell acute lymphoblastic leukemia in mice and humans overexpressing wild type IL-7Ra EACR-AACR-ASPIC Conference on Tumor Microenvironment
EACR-AACR-ASPIC (Lisboa, Portugal)
2019/10/18 Overexpression of wild type IL-7Ra promotes T-cell acute lymphoblastic leukemia/lymphoma SINAL 2019 10th Meeting on Signal Transduction
(Olhão, Portugal)
2019/05/17 Overexpression of wild type IL-7Ra promotes T-cell acute lymphoblastic leukemia/lymphoma XLV Annual Meeting of Sociedade Portuguesa de Imunologia
SPI (Coimbra, Portugal)
2015/10/16 Delta One T cells for leukemia immunotherapy: clinical-grade expansion and differentiation, mode of action and in vivo proof-of-concept XLI annual meeting of the Portuguese Society for Immunology.
SPI (Braga, Portugal)
2011/11/10 Role of the tyrosine kinase receptor RET in T cell function. XXXVII Annual Meeting of the Portuguese Society for Immunology
SPI (Oeiras, Portugal)
2010/11/05 Role of proto-oncogene Ret during lymphocyte development and function Interdisciplinary Group for Hirschsprung’s Disease Meeting
(Bethesda, United States)
2010/09/09 The tyrosine kinase receptor RET is involved in T cell function XXXVI SPI Annual Meeting
SPI (Braga, Portugal)
2006/03/10 Homeostasis and sub-population structure of the peripheral lymphocyte pool Symposium -LN (Lymph Nodes) - 40 years later
(Porto, Portugal)
2005/09/10 Homeostasis of CD4+CD25+ regulatory T cells.
(Lisboa, Portugal)
2004/09/10 Regulation of peripheral T cell homeostasis. XXX meeting of the Portuguese immunology society. “Lymphocytes: Biology and medicine
SPI (Lisboa, Portugal)
2004/02/10 CD4+ T cell Homeostasis: The Thymus, The Cells and the Environment
(Bellinzona, Switzerland)
2003/05/15 Homeostasis of peripheral CD4+ T cells: IL-2Ra and IL-2 shape a population of regulatory cells that controls CD4+ T cell numbers ENII Meeting
ENII (LEs Embiez, France)
2001/07/12 Homeostasis of peripheral CD4+ T Cells: CD45RBlowCD25+CD4+ T cells limit the expansion of CD45RBhighCD25-CD4+ T cells. 11th International Congress of Immunology
(Estocolmo, Sweden)
2001/07/12 Thymus regeneration and peripheral T cell restoration in mice with a reduced fraction of competent precursors 11th International Congress of Immunology
(Estocolmo, Sweden)

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2024/03/19 - Current Defining a CD8 Regulatory T cell Lineage in the Human Thymus
Co-supervisor
Universidade de Lisboa Faculdade de Medicina, Portugal
2023/10/01 - Current Harnessing Human Naïve CD4 T-Cells
Co-supervisor
Universidade de Lisboa Faculdade de Medicina, Portugal
2020/09/01 - Current Revealing lung repair after ARDS through the IL-22 path
Co-supervisor of André Miguel Carapinha Gomes
Programa Doutoral do Centro Académico de Medicina de Lisboa (ramo de Medicina; ramo de Ciências Biomédicas; ramo de Ciências e Tecnologias da Saúde) (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
2020/01/01 - Current Characterizing the risk for IL-7R-mediated malignancy in different stages a hematopoietic development
Co-supervisor of Ana Patricia Cebola Cachucho
Doutoramento (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
2022/09/15 - 2024/02/29 Unveiling the role of CD1a in human regulatory T cell development
Supervisor of Nicole Martins
Evolutionary and Developmental Biology (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2021/07/01 - 2023/09/12 More than a marker: A role for CD31 in human naïve T cell homeostasis.
Supervisor of Patrícia Nicole Guilherme Silva
Mestrado em Investigação Biomédica (Master)
Universidade de Lisboa Faculdade de Medicina, Portugal
2021/09/01 - 2022/03/28 Investigation on RANK-RANKL in the Development of Regulatory T-Cells in the Human Thymus
Supervisor of Ramona Adameck
Universität Hamburg, Germany
2020/10/01 - 2021/07/16 Células T reguladoras expressando FOXP3 e CD25 na Imunodeficiência Comum Variável.
Supervisor of Carolina Marques Martins
Mestrado integrado em Medicina (Master)
Universidade de Lisboa Faculdade de Medicina, Portugal
2020/06/01 - 2021/06/24 RANK-RANKL in thymic Regulatory T cells
Supervisor of Zoe Junginger
Goethe-Universität Frankfurt am Main, Germany
2018/09/01 - 2019/11/09 Investigating the impact of gain of function IL7R mutation in lymphocyte leukemogenesis in vivo.
Co-supervisor
Mestrado em Oncobiologia (Master)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal

Event organisation

Event name
Type of event (Role)
Institution / Organization
2010/03/01 - 2012/10/01 Co-Organizador dos IGC X IMM Immunology meeting. com uma periodicidade de aproximadamente 6 em 6 semanas, este meeting foi promovendo a interação entre as comunidades de imunologistas dos dois institutos. Esta reunião foi bastante bem sucedida nestas edições iniciais. (2010/03/01)
Meeting (Co-organisor)

Event participation

Activity description
Type of event
Event name
Institution / Organization
2011/05/03 - Current POSTER Co-Author: Influence of ionizing Radiation on the T-Cell Memory. Ilja Ciernik, Afonso Almeida, Federica Sallusto and A.Lanzavecchia.
Meeting
17th Annual Meeting of the German Society for Radiation Oncology. Wiesbaden, Germany.
2008/04/19 - Current POSTER Co-author: Effects of Total Body Irradiation (TBI) on the peripheral T cell pool. Afonso Almeida, A. Lanzavecchia and Ilja Ciernik.
Meeting
12th Annual Meeting of the German Society for Radiation Oncology. Lausanne, Suiça.
2006/09/01 - Current POSTER PRESENTATION: Competititve Fitness of Lymphocytes in Lymphopenia Driven Proliferation. Almeida, A R M; Guarda, G.; Sallusto, F.; Lanzavecchia, A.
Meeting
1st Joint Meeting of the European Societies of Immunology. Paris, França.
2006/09/01 - Current POSTER PRESENTATION: Indexation as a novel mechanism of lymphocyte homeostasis: the number of CD4+CD25+ regulatory T cells is indexed to the number of IL-2-producing cells. Almeida, A R M; Zaragoza B.; Freitas, A. A
Meeting
1st Joint Meeting of the European Societies of Immunology. Paris, France.
1997/04/01 - Current POSTER co-author: DNA Allelic Diversity Within a1-antitripsin Normal and Pathogenic Gene Products From Northern Portugal. Poster. Jorge Rocha, Dalila Pinto, Afonso Almeida, Maria Teresa Santos, António Amorim
Congress
9th International Congress on Genes, Gene Families and Isozymes. San Antonio, USA.
2019/09/19 - 2019/09/21 POSTER PRESENTATION: Overexpression of wild type IL-7Ra promotes T-cell acute lymphoblastic leukemia/lymphoma. Afonso Almeida, Ana Silva, Mafalda Matos, Sofie Demeyer, Ana Cachucho, Thea Hogan, Yunlei Li, Jules Meijerink, Jan Cools, Ana Rita Grosso, Benedict Seddon1 and João T. Barata
Meeting
2nd European Society for Immunodeficiencies Focused Meeting" com o tema "Malignancy and PID. Brussels, 2019.
2016/08/21 - 2016/08/26 POSTER Co-Author: Vdelta1 T cells expressing natural cytotoxicity receptors for adoptive cell therapy of leukemia. Daniel V. Correia, Afonso Almeida, Maria G. Silva, Diogo Anjos and Bruno Silva-Santos. (Oral presentation by BSS)
Congress
16th International Congress of Immunology – ICI 2016 Sunday 21st August 2016 at Melbourne, Australia
2015/10/26 - 2015/10/28 POSTER Co-Author: Role of diet-derived retinoids in natural intraepithelial lymphocytes. Manuela Ferreira, Bruno Belchior Raposo, Carlos Labão-Almeida, Afonso Almeida, Henrique Veiga-Fernandes. (Oral Presentation by MF).
Meeting
XLI Annual Meeting of the Portuguese Society for Immunology.
Sociedade Portuguesa de Imunologia, Portugal
2012/09/05 - 2012/09/08 POSTER PRESENTATION: The role of the tyrosine kinase receptor RET in T cell development and function. Afonso R.M. Almeida, Diogo Pereira, Silvia Madeira, Helder Ribeiro & Henrique Veiga-Fernandes.
Congress
European Congress in Immunology. Glasgow, Scotland.
European Federation of Immunological Societies, Netherlands
2008/04/17 - 2008/04/18 POSTER PRESENTATION: Contribution of CD8+ T-cell subpopulations in peripheral reconstitution following lymphopenia. Almeida, A. R. M., Rinaldi, F. Bertoni, F. Sallusto, I. Ciernik, A. Lanzavecchia.
Meeting
Annual Joint Meeting of the Swiss Societies for Pneumology, Pediatric Pneumology, Allergology and Immunology. Freiburg, Suiça
2000/09/01 - 2000/09/07 SUMMER SCHOOL AND POSTER PRESENTATION: Homeostasis of peripheral CD4+ T cell numbers: the role of CD4+CD45RBlowCD25+ cells. Afonso Almeida, Nicolas Legrand & Antonio A. Freitas.
Other
FEBS International Summer School in Immunology – The Immune System: Genes, Receptors and Regulation. Ionian Village, Greece.

Jury of academic degree

Topic
Role
Candidate name (Type of degree)
Institution / Organization
2025/01/10 Reduction of immunogenicity of monoclonal antibodies and immunosenescence in COVID-19 patients
Thesis Member
Rodrigo Pedroso (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
2024/12/05 Characterization of a novel population of iNKT cells, using a-galactosidase A-deficient mice as the model
(Thesis) Main arguer
Leonardo Silva Matias (Master)
Universidade de Aveiro, Portugal
2023/07/27 Characterizing the role of the Circadian Molecular Clock in T-ALL
(Thesis) Main arguer
Patricia Amaral (Master)
Universidade de Lisboa Faculdade de Medicina, Portugal
2023/06/29 Functional heterogeneity between T follicular regulatory cells from different human compartments
(Thesis) Main arguer
Diogo Antunes (Master)
Universidade de Lisboa Faculdade de Medicina, Portugal
2023/01/26 Exploring the role of HoxA9 in IL7R-mediated B-Cell Leukemogenesis
(Thesis) Main arguer
Sara Gama (Master)
Universidade de Lisboa Faculdade de Medicina, Portugal
2019/04/11 Dissecting functional and molecular signatures of anti-tumour myeloid cells in vivo.
(Thesis) Main arguer
Ana Raquel Vicente Lopes (Master)
Universidade de Lisboa Faculdade de Medicina, Portugal
2011/06/04 O papel das interações CD70-CD27 na diferenciação e ativação de células T ¿d.
Thesis Member
Ana de Barros (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
2010/04/04 Controlo da actividade dos linfócitos T gd por células reguladoras CD4+CD25+FOXP3+.
(Thesis) Main arguer
Natacha Gonçalves-Sousa (Master)
Universidade Lusófona do Porto Faculdade de Ciências Naturais Engenharias e Tecnologias, Portugal
2009/06/06 Modulation of Invariant Natural Killer T (INKT)- cell function in immune-mediated diseases.
(Thesis) Main arguer
Catarina Filipa dos Santos Sá e Almeida (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal

Association member

Society Organization name Role
2005/01/01 - Current Sociedade Portuguesa de Imunologia Sócio

Committee member

Activity description
Role
Institution / Organization
2024/05/01 - Current Member of the Board, as treasurer
Member
Sociedade Portuguesa de Imunologia, Portugal

Conference scientific committee

Conference name Conference host
2025/02/28 - Current 19th International congress of Immunology Vienna, Austria

Consulting

Activity description Institution / Organization
2024/05/01 - Current Expert in the evaluation of grants from ANR. (France) Association nationale de la recherche technique, France
2018/04/04 - Current Report for application to a Research Foundation Flanders (PDoc grant).

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2021 - Current Evaluating T cell homeostasis in extreme settings Imunologia (Doutoramento) Universidade de Lisboa Faculdade de Medicina, Portugal

Centro Académico de Medicina de Lisboa, Portugal
2020 - Current Imunologia clínica MEstrada integrado em Medicina (Mestrado integrado) Universidade de Lisboa Faculdade de Medicina, Portugal
2020 - Current T cell homeostasis Mestrado em investigação Biomédica (Mestrado) Universidade de Lisboa Faculdade de Medicina, Portugal
2016/07/08 - Current Cancer Immunology and Immunotherapy. Esta aula (3 horas) foi dedicada ao tema da imunologia do cancro e imunoterapia. Lecionei os conceitos essenciais do tema, da imunologia anti-tumoral e “immunesurveillance” aos mecanismos de evasão tumoral e à imunoterapia, ativa ou passiva. No tema da terapia celular foi referida a tecnologia CAR-T mas também a minha experiência com as células DOT® como exemplo. Mestrado integrado em Medicina (Mestrado integrado) Universidade do Algarve - Campus de Gambelas, Portugal
2016/05/04 - Current T Cell Homeostasis. Leccionei a convite dos organizadores do minicurso em Imunologia, aula (1,5H) sobre o tema da homeostasia das células T. Transmiti conceitos fundamentais e foram apresentadas e discutidas evidencias experimentais e modelos de interesse no tema,incluindo a minha própria experiência no estudo das células T CD4+ reguladoras. Lisbon Biomed (Doutoramento) Universidade de Lisboa Faculdade de Medicina, Portugal
2015/10/01 - Current Imunoterapia celular. Este seminário/aula foi dedicado ao tema da terapia celular, neste caso o exemplo real do desenvolvimento das células DOT® foi apresentado, como demonstração dos passos necessários desde a descoberta científica à planificação de ensaios clínicos. Medicines and Pharmaceutical Innovation (i3DU) PhD program (Doutoramento) Universidade de Lisboa Faculdade de Farmácia, Portugal
2009/04/03 - Current A convite dos organizadores do módulo de Imunologia (inicialmente Prof. Dr. AntónioFreitas e mais tarde Prof. Dr. Alexandre Carmo), dou uma aula de 4H onde são apresentados e discutidos diversos conceitos essenciais para o tema da homeostasia dos linfócitos T. Recorro a muitas evidências experimentais, ”clássicas” e recentes, assim como a alguns dos meus próprios trabalhos para fomentar a discussão e procurar transmitir o meu entusiasmo pelo tema. Programa Graduado em Áreas da Biologia Básica e Aplicada (GABBA) (Doutoramento) Universidade do Porto, Portugal
2013/09/01 - 2017/06/30 Homeostasia e Clonalidade. Aula sobre o tema da homeostasia de linfócitos e clonalidade no sistema imunitário adaptativo. Com duração de 1 hora, leciono o tema com incidência nas células T, referindo conceitos básicos essenciais à compreensão da relevância e das consequências do equilíbrio homeostático na imunocompetência do indivíduo. São também transmitidas as noções necessárias para a compreensão da geração de diversidade nos recetores (T e B) e as implicações da noção de clone e da diversidade clonal para a imunocompetência. (Mestrado integrado) Universidade de Lisboa Faculdade de Medicina, Portugal
2016/05/05 - 2017/06/01 Tema “T Cell Immunology”. Sendo os estudantes provenientes de cursos muito diversos, era necessário lecionar muitos conceitos básicos de imunologia. Seguindo a organizaçãodo livro de texto “Janeway’s Immunobiology”, nos capítulos relativos a células T, incluíigualmente o tema da homeostasia e do desenvolvimento de terapias celulares. Programa de Pós-Graduação Ciência para o Desenvolvimento (Postgraduate Certificate) Instituto Gulbenkian de Ciência, Portugal
1995/01/09 - 2015/12/31 Ciências da Terra e da Vida 10º e11º Anos. (Ensino secundário) Escola Secundária Rocha Peixoto, Portugal
1996/01/01 - 1996/06/30 CiÊncias da Terra e da Vida; Ensino recorrente noturno. (Ensino secundário)

Journal scientific committee

Journal title (ISSN) Publisher
2023/06/02 - Current Science Advances AAAS
2022/05/01 - Current Immunology Letters (0165-2478) Elsevier
2019/07/04 - Current Cancers (2072-6694) MDPI AG
2019/03/18 - Current International Journal of Molecular Sciences (1422-0067) MDPI AG
2018/06/04 - Current Reports — Medical Cases, Images, and Videos (2571-841X) MDPI
2018/01/24 - Current Frontiers in Immunology (1664-3224) Frontiers Media SA
2013/05/05 - Current Immunology (1365-2567) Wiley (Blackwell Publishing)
2012/08/08 - Current PLoS ONE (1932-6203) Public Library of Science

Other jury / evaluation

Activity description Institution / Organization
2018/12/13 - Current Júri da apresentação de posters do programa GAPIC, Educação pela Ciência apresentados no dia da Investigação.
2010/05/01 - Current Júri de apresentações orais no meeting dos estudantes de doutoramento do CAML, Lisbon BioMED.
2017/06/01 - 2018/12/02 Júri de projetos do programa GAPIC- Educação pela Ciência. CAML.
Distinctions

Award

2021 Prémio Pfizer em Investigação Básica
Pfizer Portugal, Portugal

Other distinction

2008 Bolsa de Pós -Doutoramento
Fundação para a Ciência e a Tecnologia, Portugal
2002 Bolsa: American-Portuguese Biomedical Research Fund
American-Portuguese Biomedical Research Fund, United States
2002 Bolsa: Pasteur- Vasant & Kusum Joshi
2002 Bolsa de Pós Doutoramento
Fundação para a Ciência e a Tecnologia, Portugal
2001 Bolsa: Pasteur-Weizmann Foundation
1997 Bolsa de doutoramento
Fundação para a Ciência e a Tecnologia, Portugal