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Sérgio Dias. Concluiu o Doutoramento em Engenharia Informática em 2015/05 pela Universidade da Beira Interior, Mestrado em Engenharia Informática em 2009/09 pela Universidade da Beira Interior e Licenciatura em Engenharia Informática em 2006/09/30 pela Universidade da Beira Interior. Publicou 6 artigos em revistas especializadas. Actua na(s) área(s) de Visualização e Computação Gráfica, Bioinformática e Biologia Computacional e Computação Paralela e em GPUs
Identification

Personal identification

Full name
Sérgio Dias

Citation names

  • Dias, Sérgio Duarte

Author identifiers

Ciência ID
0512-AF85-D322
ORCID iD
0000-0002-9752-9386
Google Scholar ID
MKlajG4AAAAJ&hl
Researcher Id
J-8234-2017
Scopus Author Id
36668366300

Knowledge fields

  • Exact Sciences - Computer and Information Sciences
  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Exact Sciences - Computer and Information Sciences

Languages

Language Speaking Reading Writing Listening Peer-review
English Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2)
French Intermediate (B1) Intermediate (B1) Intermediate (B1) Intermediate (B1) Intermediate (B1)
Education
Degree Classification
2010/01 - 2015/05
Concluded
 Engenharia Informática (Doutoramento)
Universidade da Beira Interior, Portugal
2007/09 - 2009/09
Concluded
 Engenharia Informática (Mestrado)
Major in Redes e Multimédia
Universidade da Beira Interior, Portugal
2002/09/30 - 2006/09/30
Concluded
 Engenharia Informática (Licenciatura)
Universidade da Beira Interior, Portugal
Affiliation

Teaching in Higher Education

Category
Host institution 		Employer
2019/10 - 2020/02 Invited Adjunct Teacher (Polytechnic Teacher) Instituto Superior de Tecnologias Avançadas de Lisboa, Portugal
2018/09 - 2019/09 Invited Adjunct Teacher (Polytechnic Teacher) Instituto Politécnico de Portalegre, Portugal
Projects

Grant

Designation Funders
2015/08 - 2016/03 A-MOP--Algorithms for Macro-Molecular Pocket Detection
UTAP-EXPL/QEQ-COM/0019/2014
 Universidade de Coimbra
2010/01 - 2014/12 PhD Scholarship
SFRH-BD-69829-2010
 Fundação para a Ciência e a Tecnologia
2008/05 - 2010/06 Deformix--A Geometric Kernel for Deformable Implicit Surfaces and its Applications to Computer Games, Animation and Virtual Reality
PTDC/EIA/70750/2006
 Fundação para a Ciência e a Tecnologia
2007/09 - 2008/08 Metodologias Dinâmicas para o Sucesso em Matemática
POCI/C/04.01.02/0155/0002/2006
 Fundação para a Ciência e a Tecnologia
Outputs

Publications

Conference paper
  1. Sérgio Dias; Abel Gomes. "Triangulating molecular surfaces on multiple GPUs". 2013.
    10.1145/2488551.2488582
  2. Abel Gomes; Sergio Dias; Jose Morgado. "Polygonization of non-homogeneous non-manifold implicit surfaces with tentative topological guarantees". 2010.
    10.1109/cec.2010.5586012
  3. Sérgio Dias; Kuldeep Bora; Abel Gomes. "CUDA-based triangulations of convolution molecular surfaces". 2010.
    10.1145/1851476.1851553
  4. Sergio Dias; Abel Gomes. "GPU-based triangulation of the van der Waals surface". 2010.
    10.1109/bibm.2010.5706650
Journal article
  1. Dias, Sérgio. "CavBench: A benchmark for protein cavity detection methods". PLOS ONE (2019): http://dx.doi.org/10.1371/journal.pone.0223596.
    10.1371/journal.pone.0223596
  2. Tiago Simões; Daniel Lopes; Sérgio Dias; Francisco Fernandes; João Pereira; Joaquim Jorge; Chandrajit Bajaj; Abel Gomes. "Geometric Detection Algorithms for Cavities on Protein Surfaces in Molecular Graphics: A Survey". Computer Graphics Forum (2017): https://doi.org/10.1111%2Fcgf.13158.
    10.1111/cgf.13158
  3. Sérgio E.D. Dias; Quoc T. Nguyen; Joaquim A. Jorge; Abel J.P. Gomes. "Multi-GPU-based detection of protein cavities using critical points". Future Generation Computer Systems 67 (2017): 430-440. https://doi.org/10.1016%2Fj.future.2016.07.009.
    10.1016/j.future.2016.07.009
  4. Dias, Sérgio. "GPU-based detection of protein cavities using Gaussian surfaces". BMC Bioinformatics (2017): https://doi.org/10.1186/s12859-017-1913-4.
    10.1186/s12859-017-1913-4
  5. Sérgio E.D. Dias; Abel J.P. Gomes. "Triangulating molecular surfaces over a LAN of GPU-enabled computers". Parallel Computing 42 (2015): 35-47. https://doi.org/10.1016%2Fj.parco.2014.09.009.
    10.1016/j.parco.2014.09.009
  6. Sérgio E.D. Dias; Abel J.P. Gomes. "Graphics processing unit-based triangulations of Blinn molecular surfaces". Concurrency and Computation: Practice and Experience 23 17 (2011): 2280-2291. https://doi.org/10.1002%2Fcpe.1783.
    10.1002/cpe.1783

Other

Other output
  1. Triangulating Gaussian-Like Surfaces of Molecules with Millions of Atoms. 2014. Sérgio E. D. Dias; Abel J. P. Gomes. https://doi.org/10.1007%2F978-3-319-12211-3_9.
    10.1007/978-3-319-12211-3_9