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Identificação

Identificação pessoal

Nome completo
Pedro Alexandre Soares

Nomes de citação

  • Soares, Pedro

Identificadores de autor

Ciência ID
291F-4B5A-2CD4
ORCID iD
0000-0002-2807-690X
Google Scholar ID
M7LWYTkAAAAJ
Researcher Id
G-9422-2011
Scopus Author Id
15061713600

Moradas

  • Centre of Molecular and Environmental Biology (CBMA) Biology Department, University of Minho, 4710-057 , Gualtar, Braga, Portugal (Profissional)

Websites

Projetos

Bolsa

Designação Financiadores
2022/01/01 - 2024/12/31 Fine-scale study of ancestry, mobility and diet in the Copper Age-Bronze Age transition in northern Portugal
PTDC/HAR-ARQ/3286/2021
Investigador responsável
Universidade do Minho, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2018/02/01 - 2023/01/31 Australasian Colonization Research: Origins of Seafaring to Sahul
info:eu-repo/grantAgreement/EC/H2020/759677/EU
Investigador
University of Southampton, Reino Unido
 European Commission
2018/10 - 2022/09 Abordagens omicas para a exploração industrial de Torulaspora delbrueckii: elucidação das bases moleculares de fenótipos complexos
Provided by PTCRIS: PTDC/BIA-MIC/32059/2017
 Fundação para a Ciência e a Tecnologia
2018/10 - 2022/09 Surto de dengue na Madeira: ferramenta para pesquisar fatores do hospedeiro envolvidos na infecão assintomática
Provided by PTCRIS: PTDC/SAU-INF/30440/2017
 Fundação para a Ciência e a Tecnologia
2018/09 - 2022/08 De Portugal para África: revelando a origem africana da população portuguesa atual
Provided by PTCRIS: PTDC/SOC-ANT/30316/2017
 Fundação para a Ciência e a Tecnologia
2019/04/01 - 2022/03/31 Efficient computational solutions for integrated DNA barcoding, metabarcoding and associated high-throughput sequencing data analysis
POCI-01-0145-FEDER-029626
Investigador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Desativado
2018/09/01 - 2021/08/31 From Portugal back to Africa: uncovering the african roots of present-day Portuguese
PTDC/SOC-ANT/30316/2017
Investigador responsável
Universidade da Madeira, Portugal

Universidade do Minho, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2018/09/01 - 2021/08/31 Omics approaches towards the industrial exploitation of Torulaspora delbrueckii: Elucidation of the molecular basis underlying complex cellular traits
PTDC/BIA-MIC/32059/2017
Investigador
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Em curso
2018/09/01 - 2021/08/31 Madeira Dengue Outbreak: a tool for searching host factors involved in asymptomatic infection
PTDC/SAU-INF/30440/2017
Investigador
Universidade da Madeira, Portugal
 Fundação para a Ciência e a Tecnologia
Em curso
2015/09/01 - 2020/08/31 Leverhulme Doctoral Scholarship Centre for Evolutionary Genomics
-
Investigador
University of Huddersfield, Reino Unido
 Leverhulme Trust
Em curso
2016/05 - 2020/08 Origens da Cultura Campaniforme: Testando a hipotética expansão Neolítica a partir da Península Ibérica usando genomas mitocondriais actuais e antigos
Provided by PTCRIS: PTDC/EPH-ARQ/4164/2014
 Fundação para a Ciência e a Tecnologia
2016/01/01 - 2020/05/31 EcoAgriFood: Innovative Green Products and Processes to Promote Agri-Food Bioeconomy
NORTE-01-0145-FEDER-000009
Investigador
Programa Operacional Regional do Norte
Em curso
2014/05 - 2019/04 Archaeogenetics of Southeast Asia and the Pacific: from whole-mtDNA genomes to complete human genomes
Provided by PTCRIS: IF/01641/2013/CP1158/CT0015
 Fundação para a Ciência e a Tecnologia
2016/01 - 2018/12 Beaker origins: Testing the hypothesis of late Neolithic dispersals from Iberia using both ancient and contemporary mitochondrial genomes
Provided by PTCRIS: 142795
Investigador responsável
Fundação para a Ciência e a Tecnologia, I.P.
2012/01 - 2016/12 Dengue research Framework for Resisting Epidemics in Europe
282378
Investigador
Universidade do Porto Instituto de Patologia e Imunologia Molecular, Portugal
 European Commission
2011/11/01 - 2015/10/31 A Marie Curie Initial Training Network on the History, Archaeology and New Genetics of the Transatlantic Slave Trade
290344
Universidade do Porto Instituto de Patologia e Imunologia Molecular, Portugal
 European Union
Concluído
2013/01/01 - 2015/06/30 Microenvironment, metabolism and cancer
-
Investigador
Universidade do Porto Instituto de Patologia e Imunologia Molecular, Portugal
 Programa Operacional Regional do Norte
2013/06 - 2015/05 Genetic history and population structure in Southeast Asia
132046
Investigador responsável
Fundação para a Ciência e a Tecnologia, I.P.
2011/03 - 2014/06 Genetic and chronological characterisation of the European settlement by modern humans in the Upper Palaeolithic
113832
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
2011/03 - 2014/06 Caracterização genética e cronológica do povoamento europeu pelo Homem Moderno no Paleolítico Superior
Provided by PTCRIS: PTDC/CS-ANT/113832/2009
 Fundação para a Ciência e a Tecnologia
2012/02/01 - 2013/12/31 L and U6 mtDNA lineages in Southern and Western Iberia: migratory links between Africa and Europe
-
Investigador
Universidade do Porto Instituto de Patologia e Imunologia Molecular, Portugal
Concluído
2010/01 - 2013/04 COMPLETE MTDNA GENOME ANALYSIS AND THE MODERN HUMAN SETTLEMENT OF ANATOLIA
Provided by PTCRIS: SFRH/BPD/64233/2009
 Fundação para a Ciência e a Tecnologia
2008/05/01 - 2009/04/30 Using mitochondrial DNA to investigate the prehistoric settlement of Myanmar Pyay (Burma)
BARDA-48208
Bolseiro de Pós-Doutoramento
University of Leeds Faculty of Biological Sciences, Reino Unido
 The British Academy

Projeto

Designação Financiadores
2021/01/01 - 2025/12/31 ARNET - Aquatic Research Network
LA/P/0069/2020
10.54499/LA/P/0069/2020
Universidade do Minho, Portugal

Universidade do Algarve, Portugal

Instituto Politécnico de Leiria, Portugal

Instituto Universitário de Ciências Psicológicas Sociais e da Vida, Portugal

Universidade Nova de Lisboa, Portugal

FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Universidade de Coimbra, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal

Universidade de Évora, Portugal

Agência Regional para o Desenvolvimento da Investigação Tecnologia e Inovação, Portugal

Universidade Nova de Lisboa Associação para a Inovação e Desenvolvimento da FCT, Portugal

Centro de Ciências do Mar e do Ambiente, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2020/08/24 - 2024/04/23 A-FISH-DNA-SCAN: Cutting-edge DNA-based approaches for improved monitoring and management of fisheries resources along Magellan-Elcano´s Atlantic route
CIRCNA/BRB/0156/2019
Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal

Universidade do Minho, Portugal

Instituto Português do Mar e da Atmosfera, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Centro de Ciências do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Em curso

Outro

Designação Financiadores
2021/01/01 - 2025/12/31 Aquatic Research Infrastructure Network
LA/P/0069/2020
10.54499/LA/P/0069/2020
Universidade do Minho, Portugal

Universidade do Algarve, Portugal

Instituto Politécnico de Leiria, Portugal

Instituto Universitário de Ciências Psicológicas Sociais e da Vida, Portugal

Universidade Nova de Lisboa, Portugal

FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Universidade de Coimbra, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal

Universidade de Évora, Portugal

Agência Regional para o Desenvolvimento da Investigação Tecnologia e Inovação, Portugal

Universidade Nova de Lisboa Associação para a Inovação e Desenvolvimento da FCT, Portugal

Centro de Ciências do Mar e do Ambiente, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
Produções

Publicações

Artigo em conferência
  1. Soares, P.A.; Pereira, F.; Brion, M.; Alves, C.; Richards, M.; Carracedo, A.; Amorim, A.; Gusmão, L.. "Relative Y-STR mutation rates estimated from the variance inside SNP defined lineages". 2005.
    10.1016/j.ics.2005.09.173
Artigo em revista
  1. Henriques, Paulo; Rosa, Alexandra; Caldeira-Araújo, Helena; Soares, Pedro; Vigário, Ana Margarida. "Flying under the radar – impact and factors influencing asymptomatic DENV infections". Frontiers in Cellular and Infection Microbiology 13 (2023): http://dx.doi.org/10.3389/fcimb.2023.1284651.
    10.3389/fcimb.2023.1284651
  2. Santos-Pereira, Cátia; Sousa, Joana; Costa, Ângela M. A.; Santos, Andréia O.; Rito, Teresa; Soares, Pedro; Franco-Duarte, Ricardo; Silvério, Sara C.; Rodrigues, Lígia R.. "Functional and sequence-based metagenomics to uncover carbohydrate-degrading enzymes from composting samples". Applied Microbiology and Biotechnology 107 17 (2023): 5379-5401. http://dx.doi.org/10.1007/s00253-023-12627-9.
    10.1007/s00253-023-12627-9
  3. Teresa Rito; Pedro Fernandes; Raquel Duarte; Pedro Soares. "Evaluating Data Sharing of SARS-CoV-2 Genomes for Molecular Epidemiology across the COVID-19 Pandemic". Viruses (2023): https://doi.org/10.3390/v15020560.
    10.3390/v15020560
  4. Alves, J.; Sousa-Silva, M.; Soares, P.; Sauer, M.; Casal, M.; Soares-Silva, I.. "Structural characterization of the Aspergillus niger citrate transporter CexA uncovers the role of key residues S75, R192 and Q196". Computational and Structural Biotechnology Journal 21 (2023): 2884-2898. http://dx.doi.org/10.1016/j.csbj.2023.04.025.
    10.1016/j.csbj.2023.04.025
  5. Dulias, Katharina; Foody, M. George B.; Justeau, Pierre; Silva, Marina; Martiniano, Rui; Oteo-García, Gonzalo; Fichera, Alessandro; et al. "Ancient DNA at the edge of the world: Continental immigration and the persistence of Neolithic male lineages in Bronze Age Orkney". Proceedings of the National Academy of Sciences 119 8 (2022): http://dx.doi.org/10.1073/pnas.2108001119.
    10.1073/pnas.2108001119
  6. Sousa-Silva, Maria; Soares, Pedro; Alves, João; Vieira, Daniel; Casal, Margarida; Soares-Silva, Isabel. "Uncovering Novel Plasma Membrane Carboxylate Transporters in the Yeast Cyberlindnera jadinii". Journal of Fungi 8 1 (2022): 51. http://dx.doi.org/10.3390/jof8010051.
    10.3390/jof8010051
  7. Franco-Duarte, R.; Cadež, N.; Rito, T.; Drumonde-Neves, J.; Reyes Dominguez, Y.; Pais, C.; Sousa, M.J.; Soares, P.. "Whole-Genome Sequencing and Annotation of the Yeast Clavispora santaluciae Reveals Important Insights about Its Adaptation to the Vineyard Environment". Journal of Fungi 8 1 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85122315030&partnerID=MN8TOARS.
    10.3390/jof8010052
  8. Silva, M.; Pontes, A.; Franco-Duarte, R.; Soares, P.; Sampaio, J.P.; Sousa, M.J.; Brito, P.H.. "A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii, an emergent industrial yeast". Molecular Ecology (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85127231383&partnerID=MN8TOARS.
    10.1111/mec.16428
  9. Sá, L.; Almeida, M.; Azonbakin, S.; Matos, E.; Franco-Duarte, R.; Gómez-Carballa, A.; Salas, A.; et al. "Phylogeography of Sub-Saharan Mitochondrial Lineages Outside Africa Highlights the Roles of the Holocene Climate Changes and the Atlantic Slave Trade". International Journal of Molecular Sciences 23 16 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85137125154&partnerID=MN8TOARS.
    10.3390/ijms23169219
  10. Sousa-Silva, M.; Vieira, D.; Soares, P.; Casal, M.; Soares-Silva, I.. "Expanding the knowledge on the skillful yeast cyberlindnera jadinii". Journal of Fungi 7 1 (2021): 1-19. http://www.scopus.com/inward/record.url?eid=2-s2.0-85099849781&partnerID=MN8TOARS.
    10.3390/jof7010036
  11. Fontes, J.T.; Vieira, P.E.; Ekrem, T.; Soares, P.; Costa, F.O.. "BAGS: An automated Barcode, Audit & Grade System for DNA barcode reference libraries". Molecular Ecology Resources 21 2 (2021): 573-583. http://www.scopus.com/inward/record.url?eid=2-s2.0-85094624838&partnerID=MN8TOARS.
    10.1111/1755-0998.13262
  12. Silva, M.; Oteo-García, G.; Martiniano, R.; Guimarães, J.; von Tersch, M.; Madour, A.; Shoeib, T.; et al. "Biomolecular insights into North African-related ancestry, mobility and diet in eleventh-century Al-Andalus". Scientific Reports 11 1 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85114864613&partnerID=MN8TOARS.
    10.1038/s41598-021-95996-3
  13. Santiago, C.; Rito, T.; Vieira, D.; Fernandes, T.; Pais, C.; Sousa, M.J.; Soares, P.; Franco-Duarte, R.. "Improvement of torulaspora delbrueckii genome annotation: Towards the exploitation of genomic features of a biotechnologically relevant yeast". Journal of Fungi 7 4 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85104939809&partnerID=MN8TOARS.
    10.3390/jof7040287
  14. Fernandes, T.; Silva-Sousa, F.; Pereira, F.; Rito, T.; Soares, P.; Franco-Duarte, R.; Sousa, M.J.. "Biotechnological importance of torulaspora delbrueckii: From the obscurity to the spotlight". Journal of Fungi 7 9 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85114321282&partnerID=MN8TOARS.
    10.3390/jof7090712
  15. Teresa Rito; MARTIN RICHARDS; Maria Pala; Margarida Correia-Neves; Pedro Soares. "Phylogeography of 27,000 SARS-CoV-2 Genomes: Europe as the Major Source of the COVID-19 Pandemic". Microorganisms (2020): https://www.mdpi.com/2076-2607/8/11/1678.
    10.3390/microorganisms8111678
  16. Alves, R.; Sousa-Silva, M.; Vieira, D.; Soares, P.; Chebaro, Y.; Lorenz, M.C.; Casal, M.; Soares-Silva, I.; Paiva, S.. "Carboxylic acid transporters in candida pathogenesis". mBio 11 3 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85084552559&partnerID=MN8TOARS.
    10.1128/mBio.00156-20
  17. Inlamea, O.F.; Soares, P.; Ikuta, C.Y.; Heinemann, M.B.; Achá, S.J.; Machado, A.; Neto, J.S.F.; Correia-Neves, M.; Rito, T.. "Evolutionary analysis of mycobacterium bovis genotypes across africa suggests co-evolution with livestock and humans". PLoS Neglected Tropical Diseases 14 3 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85082098474&partnerID=MN8TOARS.
    10.1371/journal.pntd.0008081
  18. Vieira, D.; Esteves, S.; Santiago, C.; Conde-Sousa, E.; Fernandes, T.; Pais, C.; Soares, P.; Franco-Duarte, R.. "Population analysis and evolution of saccharomyces cerevisiae mitogenomes". Microorganisms 8 7 (2020): 1-22. http://www.scopus.com/inward/record.url?eid=2-s2.0-85090711549&partnerID=MN8TOARS.
    10.3390/microorganisms8071001
  19. Ribas, D.; Soares-Silva, I.; Vieira, D.; Sousa-Silva, M.; Sá-Pessoa, J.; Azevedo-Silva, J.; Viegas, S.C.; et al. "The acetate uptake transporter family motif “NPAPLGL(M/S)” is essential for substrate uptake". Fungal Genetics and Biology 122 (2019): 1-10. http://www.scopus.com/inward/record.url?eid=2-s2.0-85055317896&partnerID=MN8TOARS.
    10.1016/j.fgb.2018.10.001
  20. Macaulay, V.; Soares, P.; Richards, M.B.. "Rectifying long-standing misconceptions about the ¿ statistic for molecular dating". PLoS ONE 14 2 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85061852660&partnerID=MN8TOARS.
    10.1371/journal.pone.0212311
  21. Silva, M.; Justeau, P.; Rodrigues, S.; Oteo-Garcia, G.; Dulias, K.; Foody, G.; Fichera, A.; et al. "Untangling Neolithic and Bronze Age mitochondrial lineages in South Asia". Annals of Human Biology 46 2 (2019): 140-144. http://www.scopus.com/inward/record.url?eid=2-s2.0-85068616086&partnerID=MN8TOARS.
    10.1080/03014460.2019.1623319
  22. Brucato, N.; Fernandes, V.; Kusuma, P.; Cerny, V.; Mulligan, C.J.; Soares, P.; Rito, T.; et al. "Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia". Genome Biology and Evolution 11 3 (2019): 748-758. http://www.scopus.com/inward/record.url?eid=2-s2.0-85063277878&partnerID=MN8TOARS.
    10.1093/gbe/evz028
  23. Olalde, I.; Mallick, S.; Patterson, N.; Rohland, N.; Villalba-Mouco, V.; Silva, M.; Dulias, K.; et al. "The genomic history of the Iberian Peninsula over the past 8000 years". Science 363 6432 (2019): 1230-1234. http://www.scopus.com/inward/record.url?eid=2-s2.0-85063000762&partnerID=MN8TOARS.
    10.1126/science.aav4040
  24. Rito, T.; Vieira, D.; Silva, M.; Conde-Sousa, E.; Pereira, L.; Mellars, P.; Richards, M.B.; Soares, P.. "A dispersal of Homo sapiens from southern to eastern Africa immediately preceded the out-of-Africa migration". Scientific Reports 9 1 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85063327488&partnerID=MN8TOARS.
    10.1038/s41598-019-41176-3
  25. Vieira, P.E.; Desiderato, A.; Holdich, D.M.; Soares, P.; Creer, S.; Carvalho, G.R.; Costa, F.O.; Queiroga, H.. "Deep segregation in the open ocean: Macaronesia as an evolutionary hotspot for low dispersal marine invertebrates". Molecular Ecology 28 7 (2019): 1784-1800. http://www.scopus.com/inward/record.url?eid=2-s2.0-85064525493&partnerID=MN8TOARS.
    10.1111/mec.15052
  26. Silva, M.; Koch, J.T.; Pala, M.; Edwards, C.J.; Soares, P.; Richards, M.B.. "On Methodological issues in the Indo-European debate By Michel Danino". Journal of Biosciences 44 3 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85068734509&partnerID=MN8TOARS.
    10.1007/s12038-019-9890-6
  27. Rito, T.; Ferreira, J.; Cavadas, B.; Soares, P.; Oliveira, O.; Richards, M.B.; Duarte, R.; Pereira, L.; Correia-Neves, M.. "Association of leukotriene A4 hydrolase with tuberculosis susceptibility using genomic data in Portugal". Microorganisms 7 12 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85078610005&partnerID=MN8TOARS.
    10.3390/microorganisms7120650
  28. Dulias, K.; Birch, S.; Wilson, J.F.; Justeau, P.; Gandini, F.; Flaquer, A.; Soares, P.; et al. "Maternal relationships within an Iron Age burial at the High Pasture Cave, Isle of Skye, Scotland". Journal of Archaeological Science 110 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85072012574&partnerID=MN8TOARS.
    10.1016/j.jas.2019.104978
  29. Marina Silva; Marisa Oliveira; Daniel Vieira; Andreia Brandão; Teresa Rito; Joana B. Pereira; Ross M. Fraser; et al. "A genetic chronology for the Indian Subcontinent points to heavily sex-biased dispersals". BMC Evolutionary Biology 17 1 (2017): https://doi.org/10.1186%2Fs12862-017-0936-9.
    10.1186/s12862-017-0936-9
  30. Sahakyan, H.; Kashani, B.H.; Tamang, R.; Kushniarevich, A.; Francis, A.; Costa, M.D.; Pathak, A.K.; et al. "Origin and spread of human mitochondrial DNA haplogroup U7". Scientific Reports 7 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85017234632&partnerID=MN8TOARS.
    10.1038/srep46044
  31. Olivieri, A.; Sidore, C.; Achilli, A.; Angius, A.; Posth, C.; Furtwängler, A.; Brandini, S.; et al. "Mitogenome Diversity in Sardinians: A Genetic Window onto an Island's Past". Molecular Biology and Evolution 34 5 (2017): 1230-1239. http://www.scopus.com/inward/record.url?eid=2-s2.0-85019115396&partnerID=MN8TOARS.
    10.1093/molbev/msx082
  32. Sierra, B.; Triska, P.; Soares, P.; Garcia, G.; Perez, A.B.; Aguirre, E.; Oliveira, M.; et al. "OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed CUBANS". PLoS Pathogens 13 2 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85014104562&partnerID=MN8TOARS.
    10.1371/journal.ppat.1006220
  33. Pereira, J.B.; Costa, M.D.; Vieira, D.; Pala, M.; Bamford, L.; Harich, N.; Cherni, L.; et al. "Reconciling evidence from ancient and contemporary genomes: A major source for the European Neolithic within Mediterranean Europe". Proceedings of the Royal Society B: Biological Sciences 284 1851 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85016117668&partnerID=MN8TOARS.
    10.1098/rspb.2016.1976
  34. L. M. Oliveira; T. Knebelsberger; M. Landi; P. Soares; M. J. Raupach; F. O. Costa. "Assembling and auditing a comprehensive DNA barcode reference library for European marine fishes". Journal of Fish Biology (2016): http://dx.doi.org/10.1111/jfb.13169.
    10.1111/jfb.13169
  35. Gandini, F.; Achilli, A.; Pala, M.; Bodner, M.; Brandini, S.; Huber, G.; Egyed, B.; et al. "Mapping human dispersals into the Horn of Africa from Arabian Ice Age refugia using mitogenomes". Scientific Reports 6 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84966320652&partnerID=MN8TOARS.
    10.1038/srep25472
  36. Brandão, A.; Eng, K.K.; Rito, T.; Cavadas, B.; Bulbeck, D.; Gandini, F.; Pala, M.; et al. "Quantifying the legacy of the Chinese Neolithic on the maternal genetic heritage of Taiwan and Island Southeast Asia". Human Genetics 135 4 (2016): 363-376. http://www.scopus.com/inward/record.url?eid=2-s2.0-84957947895&partnerID=MN8TOARS.
    10.1007/s00439-016-1640-3
  37. Soares, P.A.; Trejaut, J.A.; Rito, T.; Cavadas, B.; Hill, C.; Eng, K.K.; Mormina, M.; et al. "Resolving the ancestry of Austronesian-speaking populations". Human Genetics 135 3 (2016): 309-326. http://www.scopus.com/inward/record.url?eid=2-s2.0-84958777413&partnerID=MN8TOARS.
    10.1007/s00439-015-1620-z
  38. Richards, M.B.; Soares, P.; Torroni, A.. "Palaeogenomics: Mitogenomes and migrations in Europe's past". Current Biology 26 6 (2016): R243-R246. http://www.scopus.com/inward/record.url?eid=2-s2.0-84962590921&partnerID=MN8TOARS.
    10.1016/j.cub.2016.01.044
  39. Gomes, V.; Pala, M.; Salas, A.; Álvarez-Iglesias, V.; Amorim, A.; Gómez-Carballa, A.; Carracedo, Á.; et al. "Mosaic maternal ancestry in the Great Lakes region of East Africa". Human Genetics 134 9 (2015): 1013-1027. http://www.scopus.com/inward/record.url?eid=2-s2.0-84938953750&partnerID=MN8TOARS.
    10.1007/s00439-015-1583-0
  40. Fernandes, V.; Triska, P.; Pereira, J.B.; Alshamali, F.; Rito, T.; Machado, A.; Fajkošová, Z.; et al. "Genetic stratigraphy of key demographic events in Arabia". PLoS ONE 10 3 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84928905713&partnerID=MN8TOARS.
    10.1371/journal.pone.0118625
  41. Triska, P.; Soares, P.; Patin, E.; Fernandes, V.; Cerny, V.; Pereira, L.. "Extensive admixture and selective pressure across the sahel belt". Genome Biology and Evolution 7 12 (2015): 3484-3495. http://www.scopus.com/inward/record.url?eid=2-s2.0-84982150804&partnerID=MN8TOARS.
    10.1093/gbe/evv236
  42. Silva, M.; Alshamali, F.; Silva, P.; Carrilho, C.; Mandlate, F.; Jesus Trovoada, M.; Cerny, V.; Pereira, L.; Soares, P.. "60,000 years of interactions between Central and Eastern Africa documented by major African mitochondrial haplogroup L2". Scientific Reports 5 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84938117675&partnerID=MN8TOARS.
    10.1038/srep12526
  43. Cavadas, B.; Soares, P.; Camacho, R.; Brandão, A.; Costa, M.D.; Fernandes, V.; Pereira, J.B.; et al. "Fine Time Scaling of Purifying Selection on Human Nonsynonymous mtDNA Mutations Based on the Worldwide Population Tree and Mother-Child Pairs". Human Mutation 36 11 (2015): 1100-1111. http://www.scopus.com/inward/record.url?eid=2-s2.0-84944036873&partnerID=MN8TOARS.
    10.1002/humu.22849
  44. Hernández, C.L.; Soares, P.; Dugoujon, J.M.; Novelletto, A.; Rodríguez, J.N.; Rito, T.; Oliveira, M.; et al. "Early holocenic and historic mtDNA African signatures in the Iberian Peninsula: The Andalusian region as a paradigm". PLoS ONE 10 10 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84949845601&partnerID=MN8TOARS.
    10.1371/journal.pone.0139784
  45. Pereira, L.; Soares, P.; Triska, P.; Rito, T.; Van Der Waerden, A.; Li, B.; Radivojac, P.; Samuels, D.C.. "Global human frequencies of predicted nuclear pathogenic variants and the role played by protein hydrophobicity in pathogenicity potential". Scientific Reports 4 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84923322985&partnerID=MN8TOARS.
    10.1038/srep07155
  46. Rito, T.; Richards, M.B.; Fernandes, V.; Alshamali, F.; Cerny, V.; Pereira, L.; Soares, P.. "The first modern human dispersals across Africa". PLoS ONE 8 11 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84893421368&partnerID=MN8TOARS.
    10.1371/journal.pone.0080031
  47. Podgorná, E.; Soares, P.; Pereira, L.; Cerný, V.. "The genetic impact of the lake chad basin population in north africa as documented by mitochondrial diversity and internal variation of the L3e5 haplogroup". Annals of Human Genetics 77 6 (2013): 513-523. http://www.scopus.com/inward/record.url?eid=2-s2.0-84892979417&partnerID=MN8TOARS.
    10.1111/ahg.12040
  48. Soares, P.; Abrantes, D.; Rito, T.; Thomson, N.; Radivojac, P.; Li, B.; Macaulay, V.; Samuels, D.C.; Pereira, L.. "Evaluating Purifying Selection in the Mitochondrial DNA of Various Mammalian Species". PLoS ONE 8 3 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84875280073&partnerID=MN8TOARS.
    10.1371/journal.pone.0058993
  49. Mellars, P.; Gori, K.C.; Carr, M.; Soares, P.A.; Richards, M.B.. "Genetic and archaeological perspectives on the initial modern human colonization of southern Asia". Proceedings of the National Academy of Sciences of the United States of America 110 26 (2013): 10699-10704. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879512750&partnerID=MN8TOARS.
    10.1073/pnas.1306043110
  50. Martins, R.G.; Nunes, J.B.; Máximo, V.; Soares, P.; Peixoto, J.; Catarino, T.; Rito, T.; et al. "A founder SDHB mutation in Portuguese paraganglioma patients". Endocrine-Related Cancer 20 6 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84891402383&partnerID=MN8TOARS.
    10.1530/ERC-12-0399
  51. Costa, M.D.; Pereira, J.B.; Pala, M.; Fernandes, V.; Olivieri, A.; Achilli, A.; Perego, U.A.; et al. "A substantial prehistoric european ancestry amongst ashkenazi maternal lineages". Nature Communications 4 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84885452665&partnerID=MN8TOARS.
    10.1038/ncomms3543
  52. Fernandes, V.; Alshamali, F.; Alves, M.; Costa, M.D.; Pereira, J.B.; Silva, N.M.; Cherni, L.; et al. "The Arabian cradle: Mitochondrial relicts of the first steps along the Southern route out of Africa". American Journal of Human Genetics 90 2 (2012): 347-355. http://www.scopus.com/inward/record.url?eid=2-s2.0-84857046912&partnerID=MN8TOARS.
    10.1016/j.ajhg.2011.12.010
  53. Soares, P.; Alshamali, F.; Pereira, J.B.; Fernandes, V.; Silva, N.M.; Afonso, C.; Costa, M.D.; et al. "The expansion of mtDNA haplogroup L3 within and out of Africa". Molecular Biology and Evolution 29 3 (2012): 915-927. http://www.scopus.com/inward/record.url?eid=2-s2.0-84857059207&partnerID=MN8TOARS.
    10.1093/molbev/msr245
  54. Al-Abri, A.; Podgorná, E.; Rose, J.I.; Pereira, L.; Mulligan, C.J.; Silva, N.M.; Bayoumi, R.; Soares, P.; Cerný, V.. "Pleistocene-Holocene boundary in Southern Arabia from the perspective of human mtDNA variation". American Journal of Physical Anthropology 149 2 (2012): 291-298. http://www.scopus.com/inward/record.url?eid=2-s2.0-84866345742&partnerID=MN8TOARS.
    10.1002/ajpa.22131
  55. Pereira, L.; Soares, P.; Máximo, V.; Samuels, D.C.. "Somatic mitochondrial DNA mutations in cancer escape purifying selection and high pathogenicity mutations lead to the oncocytic phenotype: Pathogenicity analysis of reported somatic mtDNA mutations in tumors". BMC Cancer 12 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84856420412&partnerID=MN8TOARS.
    10.1186/1471-2407-12-53
  56. Pala, M.; Olivieri, A.; Achilli, A.; Accetturo, M.; Metspalu, E.; Reidla, M.; Tamm, E.; et al. "Mitochondrial DNA signals of late glacial recolonization of europe from near eastern refugia". American Journal of Human Genetics 90 5 (2012): 915-924. http://www.scopus.com/inward/record.url?eid=2-s2.0-84860740251&partnerID=MN8TOARS.
    10.1016/j.ajhg.2012.04.003
  57. Achilli, A.; Olivieri, A.; Soares, P.; Lancioni, H.; Kashani, B.H.; Perego, U.A.; Nergadze, S.G.; et al. "Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication". Proceedings of the National Academy of Sciences of the United States of America 109 7 (2012): 2449-2454. http://www.scopus.com/inward/record.url?eid=2-s2.0-84857124895&partnerID=MN8TOARS.
    10.1073/pnas.1111637109
  58. Soares, P.; Rito, T.; Trejaut, J.; Mormina, M.; Hill, C.; Tinkler-Hundal, E.; Braid, M.; et al. "Ancient voyaging and polynesian origins". American Journal of Human Genetics 88 2 (2011): 239-247. http://www.scopus.com/inward/record.url?eid=2-s2.0-79851514728&partnerID=MN8TOARS.
    10.1016/j.ajhg.2011.01.009
  59. Pereira, L.; Soares, P.; Radivojac, P.; Li, B.; Samuels, D.C.. "Comparing phylogeny and the predicted pathogenicity of protein variations reveals equal purifying selection across the global human mtDNA diversity". American Journal of Human Genetics 88 4 (2011): 433-439. http://www.scopus.com/inward/record.url?eid=2-s2.0-79953706954&partnerID=MN8TOARS.
    10.1016/j.ajhg.2011.03.006
  60. Musilová, E.; Fernandes, V.; Silva, N.M.; Soares, P.; Alshamali, F.; Harich, N.; Cherni, L.; et al. "Population history of the Red Sea-genetic exchanges between the Arabian Peninsula and East Africa signaled in the mitochondrial DNA HV1 haplogroup". American Journal of Physical Anthropology 145 4 (2011): 592-598. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960153689&partnerID=MN8TOARS.
    10.1002/ajpa.21522
  61. Erný, V.; Pereira, L.; Musilová, E.; Kujanová, M.; Vašíková, A.; Blasi, P.; Garofalo, L.; et al. "Genetic structure of pastoral and farmer populations in the African Sahel". Molecular Biology and Evolution 28 9 (2011): 2491-2500. http://www.scopus.com/inward/record.url?eid=2-s2.0-80052146246&partnerID=MN8TOARS.
    10.1093/molbev/msr067
  62. Chaubey, G.; Metspalu, M.; Choi, Y.; Mägi, R.; Romero, I.G.; Soares, P.; Van Oven, M.; et al. "Population genetic structure in indian austroasiatic speakers: The role of landscape barriers and sex-specific admixture". Molecular Biology and Evolution 28 2 (2011): 1013-1024. http://www.scopus.com/inward/record.url?eid=2-s2.0-78751529248&partnerID=MN8TOARS.
    10.1093/molbev/msq288
  63. Pereira, L.; Silva, N.M.; Franco-Duarte, R.; Fernandes, V.; Pereira, J.B.; Costa, M.D.; Martins, H.; et al. "Population expansion in the North African Late Pleistocene signalled by mitochondrial DNA haplogroup U6". BMC Evolutionary Biology 10 1 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-78650287512&partnerID=MN8TOARS.
    10.1186/1471-2148-10-390
  64. Soares, P.; Achilli, A.; Semino, O.; Davies, W.; Macaulay, V.; Bandelt, H.-J.; Torroni, A.; Richards, M.B.. "The Archaeogenetics of Europe". Current Biology 20 4 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-76749111003&partnerID=MN8TOARS.
    10.1016/j.cub.2009.11.054
  65. Dhandapany, P.S.; Sadayappan, S.; Xue, Y.; Powell, G.T.; Rani, D.S.; Nallari, P.; Rai, T.S.; et al. "A common MYBPC3 (cardiac myosin binding protein C) variant associated with cardiomyopathies in South Asia". Nature Genetics 41 2 (2009): 187-191. http://www.scopus.com/inward/record.url?eid=2-s2.0-59149087665&partnerID=MN8TOARS.
    10.1038/ng.309
  66. Soares, P.; Ermini, L.; Thomson, N.; Mormina, M.; Rito, T.; Röhl, A.; Salas, A.; et al. "Correcting for Purifying Selection: An Improved Human Mitochondrial Molecular Clock". American Journal of Human Genetics 84 6 (2009): 740-759. http://www.scopus.com/inward/record.url?eid=2-s2.0-66749153836&partnerID=MN8TOARS.
    10.1016/j.ajhg.2009.05.001
  67. Ermini, L.; Olivieri, C.; Rizzi, E.; Corti, G.; Bonnal, R.; Soares, P.; Luciani, S.; et al. "Complete Mitochondrial Genome Sequence of the Tyrolean Iceman". Current Biology 18 21 (2008): 1687-1693. http://www.scopus.com/inward/record.url?eid=2-s2.0-55549099553&partnerID=MN8TOARS.
    10.1016/j.cub.2008.09.028
  68. Pereira, F.; Soares, P.; Carneiro, J.; Pereira, L.; Richards, M.B.; Samuels, D.C.; Amorim, A.. "Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region". Molecular Biology and Evolution 25 12 (2008): 2759-2770. http://www.scopus.com/inward/record.url?eid=2-s2.0-56449124495&partnerID=MN8TOARS.
    10.1093/molbev/msn225
  69. Pereira, F.; Carneiro, J.; Soares, P.; Maciel, S.; Nejmeddine, F.; Lenstra, J.A.; Gusmão, L.; Amorim, A.. "A multiplex primer extension assay for the rapid identification of paternal lineages in domestic goat (Capra hircus): Laying the foundations for a detailed caprine Y chromosome phylogeny". Molecular Phylogenetics and Evolution 49 2 (2008): 663-668. http://www.scopus.com/inward/record.url?eid=2-s2.0-55149091106&partnerID=MN8TOARS.
    10.1016/j.ympev.2008.08.026
  70. Soares, P.; Trejaut, J.A.; Loo, J.-H.; Hill, C.; Mormina, M.; Lee, C.-L.; Chen, Y.-M.; et al. "Climate change and postglacial human dispersals in Southeast Asia". Molecular Biology and Evolution 25 6 (2008): 1209-1218. http://www.scopus.com/inward/record.url?eid=2-s2.0-44649179942&partnerID=MN8TOARS.
    10.1093/molbev/msn068
  71. Hill, C.; Soares, P.; Mormina, M.; Macaulay, V.; Clarke, D.; Blumbach, P.B.; Vizuete-Forster, M.; et al. "A mitochondrial stratigraphy for Island Southeast Asia". American Journal of Human Genetics 80 1 (2007): 29-43. http://www.scopus.com/inward/record.url?eid=2-s2.0-33846004483&partnerID=MN8TOARS.
    10.1086/510412
  72. Azevedo, L.; Soares, P.A.; Quental, R.; Vilarinho, L.; Teles, E.L.; Martins, E.; Diogo, L.; et al. "Mutational spectrum and linkage disequilibrium patterns at the ornithine transcarbamylase gene (OTC)". Annals of Human Genetics 70 6 (2006): 797-801. http://www.scopus.com/inward/record.url?eid=2-s2.0-33749539324&partnerID=MN8TOARS.
    10.1111/j.1469-1809.2006.00283.x
  73. Hill, C.; Soares, P.; Mormina, M.; Macaulay, V.; Meehan, W.; Blackburn, J.; Clarke, D.; et al. "Phylogeography and ethnogenesis of aboriginal Southeast Asians". Molecular Biology and Evolution 23 12 (2006): 2480-2491. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750933354&partnerID=MN8TOARS.
    10.1093/molbev/msl124
Capítulo de livro
  1. Rito, Teresa; Inlamea, Osvaldo; Oliveira, Olena; Duarte, Raquel; Soares, Pedro; Correia-Neves, Margarida. "Evolution and Molecular Characteristics of Mycobacterium tuberculosis and Mycobacterium bovis". In Integrated Science, 847-865. Springer International Publishing, 2023.
    10.1007/978-3-031-15955-8_41
  2. Rezaei, Nima; Hosseini, Nastaran-Sadat; Saghazadeh, Amene; Fateh, Abolfazl; Duse, Adriano; Ahmad, Aijaz; Braley, Alexander E.; et al. "Tuberculosis: Integrated Studies for a Complex Disease 2050". In Integrated Science, 1063-1098. Springer International Publishing, 2023.
    10.1007/978-3-031-15955-8_51
  3. Soares, P.; Mormina, M.; Rito, T.; Richards, M.B.. "THE ARCHAEOGENETICS OF SOUTHEAST ASIA". 70-91. 2022.
  4. Vieira, Daniel; Almeida, Mafalda; Richards, Martin B.; Soares, Pedro. "An Efficient and User-Friendly Implementation of the Founder Analysis Methodology". In Practical Applications of Computational Biology and Bioinformatics, 13th International Conference, 121-128. Springer International Publishing, 2019.
    10.1007/978-3-030-23873-5_15
  5. Marina Silva; Katharina Dulias; Gonzalo Oteo-Garcia; Francesca Gandini; Ceiridwen Edwards; Maria Pala; Soares, Pedro; Jim Wilson; Martin B. Richards. "Once upon a time in the West: The archaeogenetics of Celtic origins". In Exploring Celtic Origins: New Ways Forward in Archaeology, Genetics and Linguistics, editado por John Koch; Barry Cunliffe, 153-191. Oxbow Books, 2019.
    Publicado
  6. Martin B. Richards; Antonio Torroni; Pedro Soares. "Phylogeography". In The International Encyclopedia of Biological Anthropology, editado por Wenda Trevathan. 2018.
    Publicado
  7. Soares, Pedro; Rito, Teresa; Pereira, Luísa; Richards, Martin B.. "A Genetic Perspective on African Prehistory". In Vertebrate Paleobiology and Paleoanthropology, editado por Sacha C. Jones; Brian A. Stewart, 383-405. Springer Netherlands, 2016.
    10.1007/978-94-017-7520-5_18
  8. Maria Pala; Pedro Soares; Gyaneshwer Chaubey; Martin B. Richards; Graeme Barker; Candice Goucher. "Archaeogenetics". In The Cambridge World History, 26-54. Cambridge University Press, 2015.
    Publicado • 10.1017/cbo9780511978807.003
  9. Maria Pala; Gyaneshwer Chaubey; Pedro Soares; Martin B Richards. "The Archaeogenetics of European Ancestry". In Encyclopedia of Life Science (eLS). John Wiley and Sons, Chichester, 2014.
    Publicado
  10. Alves, Marco; Alves, Joãd; Camacho, Rui; Soares, Pedro; Pereira, Luísa. "From Networks to Trees". In 6th International Conference on Practical Applications of Computational Biology & Bioinformatics, 129-136. Springer Berlin Heidelberg, 2012.
    10.1007/978-3-642-28839-5_15

Outros

Outra produção
  1. Phylogeography. 2018. Martin B. Richards; Antonio Torroni; Pedro Soares.
    10.1002/9781118584538.ieba0377
  2. The Archaeogenetics of European Ancestry. 2001. Maria Pala; Gyaneshwer Chaubey; Pedro Soares; Martin B Richards.
    10.1002/9780470015902.a0024624