Identification
Personal identification
- Full name
- NUNO LUÍS BARBOSA MORAIS
Citation names
- BARBOSA-MORAIS, NUNO
Author identifiers
- Ciência ID
- 5C19-CA77-A74D
- ORCID iD
- 0000-0002-1215-0538
- Google Scholar ID
- LS9tM7sAAAAJ
- Researcher Id
- I-2743-2013
- Scopus Author Id
- 6507555084
Email addresses
- nmorais@medicina.ulisboa.pt (Professional)
Telephones
- Telephone
-
- 217999411 (Professional)
Addresses
- Instituto de Medicina Molecular João Lobo Antunes. Av. Prof. Egas Moniz, Edf. Egas Moniz, Sala P3B-34, 1649-028, Lisboa, Lisboa, Portugal (Professional)
Websites
- https://imm.medicina.ulisboa.pt/en/investigacao/labs/morais-nuno-lab/ (Professional)
- https://twitter.com/NMoraisLab (Social media)
- http://imm.medicina.ulisboa.pt/group/distrans/Nuno.html (Professional)
Knowledge fields
- Natural sciences - Biological Sciences - Biology
- Natural sciences - Biological Sciences - Cell Biology
- Natural sciences - Biological Sciences - Molecular Biology
- Exact Sciences - Computer and Information Sciences - Bioinformatics
- Medical and Health Sciences - Basic Medicine - Human Genetics
Languages
Language | Speaking | Reading | Writing | Listening | Peer-review |
---|---|---|---|---|---|
Portuguese (Mother tongue) | |||||
English | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) |
Spanish; Castilian | Advanced (C1) | Proficiency (C2) | Upper intermediate (B2) | Proficiency (C2) | Upper intermediate (B2) |
French | Elementary (A2) | Upper intermediate (B2) | Beginner (A1) | Intermediate (B1) | Beginner (A1) |
Education
Degree | Classification | |
---|---|---|
2001/10 - 2007/01/30
Concluded
|
Biomedical Sciences (Doutoramento)
Universidade de Lisboa Faculdade de Medicina, Portugal
"Bioinformatics Studies on the Complexity of Splicing and Gene Expression" (THESIS/DISSERTATION)
|
Summa Cum Laude (unanimous) |
2000/10 - 2001/09
Concluded
|
Biophysics and Biomedical Engineering (Curso de doutoramento (conclusão de unidades curriculares))
Universidade de Lisboa Faculdade de Ciências, Portugal
|
19 |
1995/10 - 2000/10
Concluded
|
Engenharia Física Tecnológica (Licenciatura)
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Cardiovascular Variability (review and experimental study)" (THESIS/DISSERTATION)
|
17 |
Affiliation
Science
Category Host institution |
Employer | |
---|---|---|
2015/01/01 - Current | Principal Investigator (Research) | Instituto de Medicina Molecular, Portugal |
2013/10/01 - 2015/04/30 | Visiting Researcher (Research) | University of Oxford, United Kingdom |
2013/06/01 - 2014/05/31 | Researcher (Research) | Instituto de Medicina Molecular, Portugal |
2010/08/01 - 2013/05/31 | Postdoc (Research) | University of Toronto, Canada |
2006/08/01 - 2010/07/31 | Postdoc (Research) | University of Cambridge, United Kingdom |
2003/01 - 2005/07 | Visiting Researcher (Research) | University of Cambridge Department of Oncology, United Kingdom |
2002/08 - 2002/08 | Visiting Researcher (Research) | Institute of Molecular and Cell Biology, Singapore |
2002/02 - 2002/05 | Visiting Researcher (Research) | European Molecular Biology Laboratory, Germany |
Teaching in Higher Education
Category Host institution |
Employer | |
---|---|---|
2020/03 - Current | Invited Associate Professor (University Teacher) | Universidade de Lisboa Faculdade de Medicina, Portugal |
1999 - 2001 | Trainee Assistant (University Teacher) | Universidade de Lisboa Instituto Superior Técnico, Portugal |
Projects
Grant
Designation | Funders | |
---|---|---|
2022 - Current | Stem cell toolkit for modelling cerebellar dysfunction in Angelman Syndrome
ASA AWARD
Researcher
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
|
Angelman Syndrome Alliance
Ongoing
|
2024/10/01 - 2027/09/30 | BIOMICS: Fostering Excellent Research, Training and Innovation in Biomedical Data Science
101159926
Principal investigator
Instituto de Medicina Molecular, Portugal
|
European Commission
Ongoing
|
2023/03/01 - 2024/08/31 | New horizons for Rett syndrome: exploring the role of transposable elements using genetically engineered human stem cell models
2022.02195.PTDC
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2023/03/01 - 2024/08/31 | Studying accelerated cognitive decline upon aging in human derived cholinergic neurons
2022.03516.PTDC
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2021/03/29 - 2024/03/28 | Regulating meningeal gamma-delta 17 T cell homeostasis: Molecular mechanisms and pathophysiological implications
PTDC/MED-IMU/1988/2020
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2021/03/15 - 2024/03/14 | A subcellular transcriptomics approach to study female gametogenesis
PTDC/BIA-BID/1606/2020
Researcher
Universidade de Aveiro, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2019/09/01 - 2023/02/28 | RiboMed: RNA in disease
Co-Principal Investigator (Co-PI)
Instituto de Medicina Molecular, Portugal
|
European Commission
Ongoing
|
2019/03/28 - 2022/03/27 | INnovating breast cancer GWAS through inTEgRation of functional GENomics
PTDC/MED-GEN/30895/2017
Researcher
Universidade do Algarve, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2015/01 - 2021/12 | Transcriptomic landscapes of cancer: studying the transcriptional etiology of metastization and its implications on personalized
therapeutics
3057
Principal investigator
Instituto de Medicina Molecular, Portugal
|
European Molecular Biology Organization
Ongoing
|
2018/10 - 2021/09 | Deciphering the epigenetic barriers of aging for iPSC reprogramming
PTDC/BIA-MOL/29320/2017
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2018/09 - 2021/08 | Physiopathology and clinical implications of the RANK c.1386C>T (R450W) mutation in breast cancer patients
PTDC/MED-ONC/28636/2017
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2018/06 - 2021/06 | Programming anti-tumour myeloid cells to improve immunotherapy strategies
PTDC/MED-IMU/30948/2017
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2017/06 - 2021/04 | GenomePT - National Laboratory for Genome Sequencing and Analysis
-
Science and Technology Management Fellow
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2015/01 - 2019/12 | RNA regulation in cancer: defining the transcriptional etiology of metastasis and its implications on personalized therapeutics
IF/00595/2014
Principal investigator
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2016/12 - 2019/11 | Accelerating progress toward the new era of precision medicine
SAICTPAC/0021/2015
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2016/06 - 2019/06 | Personalizing cancer therapy through integrated modeling and decision
PTDC/EMS-SIS/0642/2014
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2016/05 - 2019/04 | Angiocrine factors as modulators of spinal cord regeneration
PTDC/BIM-MED/3295/2014
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2017 - 2018 | (1) Transcriptomic signatures of human organ-specific aging / (2) Bioinformatics applications for analysis and visualization
of alternative splicing in biomedical research
YIP Small Grant 2017
Principal investigator
|
European Molecular Biology Organization |
2016 - 2017 | Alternative splicing during neuronal development
-
Principal investigator
Instituto de Medicina Molecular, Portugal
|
Fundação AstraZeneca |
2016 - 2017 | RNA regulation in colorectal cancer: transcriptomic landscapes of metastasis and their clinical implications
-
Principal investigator
Instituto de Medicina Molecular, Portugal
|
Instituto de Medicina Molecular |
2014/04 - 2015/09 | Multiscale modeling for personalized therapy of bone metastasis
EXPL/EMS-SIS/1954/2013
Researcher
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia |
2011/06 - 2014/05 | EVOALTSPLICE - Survey of tissue-specific alternative splicing in vertebrates by high-throughput sequencing: finding the elements
of an evolutionary ‘splicing predictor’
274037
Principal investigator
Instituto de Medicina Molecular, Portugal
Terrence Donnelly Centre for Cellular and Biomolecular Research, Canada |
European Commission |
Contract
Designation | Funders | |
---|---|---|
2020/06/01 - 2026/05/31 | Unveiling tissue-specific transcriptional signatures of human ageing for therapeutic targeting
CEECIND/00436/2018
Principal investigator
Instituto de Medicina Molecular, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2021/01/01 - 2025/12/31 | Institute of Molecular Medicine João Lobo Antunes
LA/P/0082/2020
Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2019/01/01 - 2019/12/31 | Instituto de Medicina Molecular
UID/BIM/50005/2019
Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
|
Fundação para a Ciência e a Tecnologia
Concluded
|
2017/04/12 - 2019/09/30 | PRECISE-Accelerating progress toward the new era of precision medicine
SAICTPAC/0021/2015
Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
|
Fundação para a Ciência e a Tecnologia
Concluded
|
Other
Designation | Funders | |
---|---|---|
2020 - 2022 | Sponsored Research Agreement with Limm Therapeutics SA
N/A
Principal investigator
Instituto de Medicina Molecular, Portugal
|
Concluded
|
Outputs
Publications
Book chapter |
|
Conference abstract |
|
Conference poster |
|
Journal article |
|
Manual |
|
Online resource |
|
Preprint |
|
Thesis / Dissertation |
|
Intellectual property
Provisional application for patent |
|
Activities
Oral presentation
Presentation title | Event name Host (Event location) |
|
---|---|---|
2023/11/07 | Disease transcriptomes and cognitive biases | Neuroscience Seminar Series
Instituto de Medicina Molecular João Lobo Antunes (Lisbon, Portugal)
|
2023/09/22 | What transcriptomes tell us about human ageing and associated diseases |
Center for Neuroscience and Cell Biology (Coimbra, Portugal)
|
2023/06/27 | What makes a good computational biologist? | InSilico Club
UCIBIO (Portugal)
|
2023/03/30 | Biologia computacional no estudo do que os transcritomas nos dizem sobre doenças | O que há de novo no CAML
Centro Académico de Medicina de Lisboa (Lisbon, Portugal)
|
2022/11/15 | Finding molecular regulators of response to stress and senescence by intelligible analyses of transcriptomes |
Department of Biology, University of Minho (Braga, Portugal)
|
2021/11/19 | Bioinformatic analyses of human transcriptomes made intelligible to biologists | I Workshop on Systems Medicine
iBiMED - Universidade de Aveiro (Aveiro, Portugal)
|
2021/05/25 | Computational biology in the translation of disease "omics" | Department of Bioengineering, Instituto Superior Técnico
Tiago Fernandes (Lisbon, Portugal)
|
2021/04/21 | Making biological big data intelligible to yourself and others | TransEvo (DFG Research Training Group on Translational Evolutionary Research) Core Seminar
Kiel Evolution Center, University of Kiel (Kiel, Germany)
|
2020/11/18 | What transcriptomes tell us about diseases |
Institute of Biomedicine (iBiMED), University of Aveiro (Aveiro, Portugal)
|
2020/01/20 | What transcriptomes tell us about ageing and associated diseases |
Centre of Biological Engineering, University of Minho (Braga, Portugal)
|
2020/01/16 | What transcriptomic data tell us about disease | Data Science Portugal
TalkDesk (Lisbon, Portugal)
|
2019/11/15 | Tumour transcriptomes reveal a prognostic alternative splicing signature in colorectal cancer | 23rd SPGH Annual Meeting
Sociedade Portuguesa de Genética Humana (Coimbra, Portugal)
|
2019/10/15 | What transcriptomes tell us about ageing and associated diseases | RiboMed Kickoff Meeting
(Carcavelos, Portugal)
|
2019/05/21 | What transcriptomes tell us about disease | Department of Bioengineering, Instituto Superior Técnico
Tiago Fernandes (Lisboa, Portugal)
|
2019/05/13 | Bioinformatics in the translation of cancer transcriptomics | Basel Computational Biology Seminar Series
Maria Katsantoni & Mihaela Zavolan (Biozentrum, University of Basel) (Basel, Switzerland)
|
2019/05/10 | cTRAP: identification of candidate causal perturbations and phenotype-targeting compounds from differential expression data | GenomePT Symposium
GenomePT & CIBIO/InBIO (Vairão, Portugal)
|
2019/03/18 | Bioinformatics in the translation of cancer transcriptomics | V Semana da Bioengenharia
Instituto Superior Técnico (Lisboa, Portugal)
|
2019/01/25 | CELF2 at the core of a prognostic alternative splicing signature in colorectal cancer | VIII National RNA Meeting: ptRNA2019
i3S (Porto, Portugal)
|
2018/11/06 | Biologist-intelligible alternative splicing analysis of RNA-seq data | BIRS/CMO workshop on Statistical and Computational Challenges in High-Throughput Genomics with Application to Precision Medicine
(Oaxaca, Mexico)
|
2018/09/24 | What transcriptomes tell us about disease | RiboClub Meeting
(Sherbrooke, Canada)
|
2018/07/25 | What transcriptomes tell us about disease | MRC London Institute of Medical Sciences
Jesus Gil (United Kingdom)
|
2018/07/18 | CELF2 at the core of a prognostic alternative splicing signature in colorectal cancer | 2nd International Caparica Conference in Splicing
(Caparica, Portugal)
|
2018/05/22 | What transcriptomes tell us about disease | Department of Bioengineering, Instituto Superior Técnico
Tiago Fernandes (Lisboa, Portugal)
|
2018/05/16 | What transcriptomes tell us about disease | EMBO Young Investigator Meeting
IMP (Vienna, Austria)
|
2018/05/12 | Computational biology and what transcriptomes tell us about disease | Prossyga 2018
Janssen (Porto, Portugal)
|
2018/02/06 | What transcriptomes tell us about disease | ITQB
Isabel Rocha (Oeiras, Portugal)
|
2017/05/29 | Computational biology in the translation of cancer "omics" | ReTuBi Joint Summer School
(Lisboa, Portugal)
|
2017/05/28 | Computational biology, splicing, evolution and cancer | IHMT PhD students Retreat
IHMT PhD students (Sesimbra, Portugal)
|
2017/04/05 | Alternative splicing landscapes of ageing and neurodegeneration | CEDOC
Cláudia Almeida (Lisboa, Portugal)
|
2017/03/03 | Computational Biology: splicing in evolution and disease | X Encontro Nacional dos Estudantes de Engenharia Biomédica
(Coimbra, Portugal)
|
2017/01/19 | Profiling alternative splicing in evolution and disease | International Institute of Molecular and Cell Biology
Catarina Almeida (Warsaw, Poland)
|
2017/01/19 | My way into Computational Biology | Career Path Day, International Institute of Molecular and Cell Biology
Catarina Almeida (Warsaw, Poland)
|
2016/11/02 | Gene splicing in evolution and disease | Department of Physics, Instituto Superior Técnico
Luís Melo (Lisboa, Portugal)
|
2016/10/27 | Gene expression profile of Kidney Tumors | Novartis Oncology Advanced RCC Preceptorship
Novartis (Lisboa, Portugal)
|
2016/10/12 | Alternative splicing landscapes of cancer | Instituto Português de Oncologia
Marta Pojo (Lisboa, Portugal)
|
2016/09/28 | A bioinformatics application for the analysis and visualisation of alternative splicing in cancer | 4th Post-EURASNET Symposium
(Poznan, Poland)
|
2016/09/07 | Profiling alternative splicing in evolution and disease | 2016 Summer School in Computational Biology
Armindo Salvador (Coimbra, Portugal)
|
2016/09/01 | Alternative splicing landscapes of disease | EMBO Young Scientists Forum
(Lisboa, Portugal)
|
2016/06/28 | Alternative splicing landscapes of cancer | EMBO YIP Cancer Meeting
FORTH (Heraklion, Greece)
|
2016/05/13 | Alternative splicing landscapes of disease | EMBO Young Investigator Meeting
EMBL (Heidelberg, Germany)
|
2016/05/06 | Science & Creativity | RedeValor Conference
Reitoria da Universidade de Lisboa (Lisboa, Portugal)
|
2016/04/17 | Alternative splicing and the dynamics of genomes' coding potential | 1st BioSAM, Faculty of Sciences, University of Lisbon
(Lisboa, Portugal)
|
2016/03/03 | Biologia Computacional: splicing e cancro | IV Jornadas de Bioengenharia
Universidade da Beira Interior (Covilhã, Portugal)
|
2016/03/02 | Computational Biology in the study of Alternative Splicing in Cancer | II Semana da Bioengenharia, Instituto Superior Técnico
(Lisboa, Portugal)
|
2016/01/28 | Biologia Computacional no estudo do splicing alternativo em cancro | O que há de novo no CAML
Centro Académico de Medicina de Lisboa (Lisbon, Portugal)
|
2015/12/02 | Biologia Computacional: Splicing, Evolução e Cancro | Conversas: Oncobiologia
Núcleo de Biologia Celular e Molecular, FCT NOVA (Caparica, Portugal)
|
2015/05/13 | Alternative splicing landscapes of cancer | EMBO Young Investigator Meeting
PRBB (Barcelona, Spain)
|
2015/04/27 | Alternative splicing in evolution and cancer | ICVS - Life and Health Sciences Research Institute
Agostinho Carvalho (Braga, Portugal)
|
2014/11/14 | Alternative splicing landscapes in clear cell renal cell carcinomas reveal novel candidate markers for prognosis | The 4th Global Cancer Genomics Consortium Symposium
Kyoto University (Kyoto, Japan)
|
2014/05/28 | Bioinformática: a nova era | III Jornadas de Bioengenharia, Universidade da Beira Interior
(Covilhã, Portugal)
|
2014/05/12 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | Instituto Gulbenkian de Ciência
(Oeiras, Portugal)
|
2014/03/18 | Biologia Computacional: Splicing, Evolução e Cancro | IX Jornadas de Engenharia Biológica, Instituto Superior Técnico
(Lisboa, Portugal)
|
2014/02/28 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | Bioinformatics Open Days
Universidade do Minho (Braga, Portugal)
|
2014/02/03 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | Statistics Department, Campinas State University (UNICAMP)
Tatiana Benaglia (Campinas, Brazil)
|
2013/10/30 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | Computational Biology and Bioinformatics Seminars, iMM
Ana Rita Grosso (Lisboa, Portugal)
|
2013/09/18 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | The 3rd Global Cancer Genomics Consortium Symposium: From Oncogenomics To Cancer Care - Teaching Workshop
iMM (Lisboa, Portugal)
|
2013/04/24 | Studying the evolution of tissue-specific alternative splicing using RNA-Seq data | Toronto Bioinformatics User Group Trainee Seminar
(Toronto, Canada)
|
2013/03/26 | The evolutionary landscape of alternative splicing in vertebrate species | Weatherall Institute of Molecular Medicine
Ahmed Ahmed (Oxford, United Kingdom)
|
2013/03/13 | The evolutionary landscape of alternative splicing in vertebrate species | Cheriton School of Computer Science
(Waterloo, Canada)
|
2012/12/20 | The evolutionary landscape of alternative splicing in vertebrate species | Instituto de Medicina Molecular
Maria Carmo-Fonseca (Lisboa)
|
2012/12/19 | The evolutionary landscape of alternative splicing in vertebrate species | BioFIG Seminar - Faculty of Sciences, University of Lisbon
Margarida Gama-Carvalho (Lisboa, Portugal)
|
2011/11/08 | Marie Curie International Fellowships - Case Study | Seminar Day - European Programmes for Higher Education and Research: Opportunities for Canadian Institutions
Mélodie Cardin (Toronto, Canada)
|
2011/07/15 | Species-specific differences in alternative splicing are primarily governed by evolutionary changes in cis-regulatory elements | ISMB/ECCB 2011 - Special Interest Group: Alternative Splicing
(Vienna, Austria)
|
2010/06/16 | The Illumina Code: are microarrays telling you the whole truth about cancer? | 5th CFGBC Symposium "From Array to Understanding Diseases"
(Ljubljana, Slovenia)
|
2010/05/05 | The Illumina Code: are microarrays telling you the whole truth about cancer? | Friedrich Miescher Institute for Biomedical Research
Mohamed Bentires-alj (Basel, Switzerland)
|
2010/04/23 | The Illumina Code: are microarrays telling you the whole truth about cancer? | 2nd Annual ENBDC Workshop
(Weggis, Switzerland)
|
2009/12/15 | Of trisomic mice and illuminated men | Harvard Medical School
Martha Bulik (Boston, United States)
|
2009/12/09 | Of trisomic mice and illuminated men | Koshland Hall, U.C. Berkeley
Steven Brenner (Berkeley, United States)
|
2009/12/04 | Of trisomic mice and illuminated men | The Donnelly Centre, University of Toronto
Ben Blencowe (Toronto, Canada)
|
2009/12/03 | Of trisomic mice and illuminated men | Whitehead Institute for Biomedical Research
Sue Lindquist (Cambridge, United Kingdom)
|
2009/11/26 | Computational Epigenetics | Bioinformatics in Genomic and Proteomic Data Conference
(Brno, Czech Republic)
|
2009/02/18 | Determinants of tissue-specific transcriptional regulation in a transplanted chromosome | University College London
Andrew Teschendorff (London, United Kingdom)
|
2009/02/06 | Determinants of tissue-specific transcriptional regulation in a transplanted chromosome | University of East Anglia
(Norwich, United Kingdom)
|
2008/10/02 | História(s) da Bioinformática | Engineering Faculty, Portuguese Catholic University
Pedro Matias (Oeiras, Portugal)
|
2008/07/22 | Determinants of tissue-specific transcriptional regulation in a transplanted chromosome | Department of Biology, University of Aveiro
Manuel Santos (Aveiro, Portugal)
|
2008/07/12 | Determinants of tissue-specific transcriptional regulation in a transplanted chromosome | First Portuguese Forum on Computational Biology FPBC-2008
Instituto Gulbenkian de Ciência (Oeiras, Portugal)
|
2007/06/30 | Computational biology: microarrays and beyond | Workshop \Microarrays in Clinical Oncology - promises and pitfalls", Sociedade de Ciências Médicas
(Lisboa, Portugal)
|
2006/03/15 | Differential expansion of splicing factors families in eukaryotes | Medical Research Council - Biostatistics Unit
(Cambridge, United Kingdom)
|
2006/03/15 | Bioinformatics: sequence analysis and applications | Department of Histopathology and Cytology, University of Cambridge
(Cambridge, United Kingdom)
|
2002/12/12 | Splicing & Bioinformatics | Theoretical Immunology Group, Instituto Gulbenkian de Ciência
Francisco Dionisio (Oeiras, Portugal)
|
2002/12/03 | Splicing & Bioinformatics | ALGOS Group, INESC
Arlindo Oliveira (Lisboa, Portugal)
|
2002/10/30 | A Gramática dos Genomas | 1st Meeting in Biomedical Engineering IST/FML
U. Lisbon Medical School (Lisboa, Portugal)
|
2002/10/17 | História(s) da Biofísica | 6a Semana da Física, Instituto Superior Técnico
NFIST (Lisboa, Portugal)
|
2000/08 | Heart Rate Variability: Latest News | XV International Conference for Physics Students
(Zadar, Croatia)
|
1999/08 | Breathing Physics | XIV International Conference for Physics Students
(Helsinki, Finland)
|
Supervision
Thesis Title Role |
Degree Subject (Type) Institution / Organization |
|
---|---|---|
2023/03 - Current | PhD of Francisca Xara-Brasil (project being written)
Supervisor
|
Ciências Biomédicas (PhD)
Instituto de Medicina Molecular, Portugal
Universidade de Lisboa Faculdade de Medicina, Portugal |
2022/03 - Current | p16 as a transcriptomic marker of cell senescence regulation
Supervisor
|
Ciências Biomédicas (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
Instituto de Medicina Molecular, Portugal |
2022/03 - Current | Uncovering the Stressome: A Computational Approach to Define a Stress Granule Signature and its Implication in Cancer
Supervisor
|
Ciências Biomédicas
Universidade de Lisboa Faculdade de Medicina, Portugal
Instituto de Medicina Molecular, Portugal |
2021 - Current | Single-cell transcriptomics in unravelling the complexity of the breast tumour microenvironment
Supervisor
|
Ciências Biomédicas (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
Instituto de Medicina Molecular, Portugal |
2020/10 - Current | Analysis of the repeatome of the human brain: dynamics of transposable elements during neurodevelopment and in neurodevelopmental
diseases
Supervisor of Miguel Casanova
|
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2017 - Current | When introns behave like exons: intron retention as a mechanism for dynamic regulation of gene expression
Supervisor
|
Ciências Biomédicas (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
Instituto de Medicina Molecular, Portugal |
2020/10 - 2024/02/28 | Transcriptomic signatures of the INK4A/ARF locus in senescence regulation
Supervisor of José Ferrão
|
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2017/09 - 2023/05 | Developing Web Apps for Analyses of Transcriptomes
Supervisor
|
Ciências Biomédicas (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
Instituto de Medicina Molecular, Portugal |
2021/02 - 2021/11 | Profiling ageing-associated gene expression alterations in human astrocytes using single cell transcriptomics
Supervisor of Rita Silva
|
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2015 - 2021/03/26 | The transcriptional landscape of Alzheimer's and Parkinson's diseases
Supervisor of Marie Catherine Bordone
|
Ciências Biomédicas (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
Instituto de Medicina Molecular, Portugal |
2018/07 - 2020/02 | Transcriptomic profile comparison between Alzheimer's disease mouse models and human patients
Supervisor
|
Ciências Biofarmacêuticas (Master)
Instituto de Medicina Molecular, Portugal
Universidade de Lisboa Faculdade de Farmácia, Portugal |
2018/10 - 2019/10 | Transcriptomic deconvolution of alterations in cellular composition and cell type-specific molecular changes associated with
ageing of human tissues
Supervisor
|
Biotecnologia (Master)
Instituto de Medicina Molecular, Portugal
Universidade de Lisboa Instituto Superior Técnico, Portugal |
2018/07 - 2019/10 | Single-cell transcriptomics in unravelling the molecular complexity of immunity in human disease
Supervisor
|
Bioinformática e Biologia Computacional (Master)
Instituto de Medicina Molecular, Portugal
Universidade de Lisboa Faculdade de Ciências, Portugal |
2018/02 - 2018/11 | Discovery of novel mechanisms of centrosome clustering and their therapeutic value in cancer
Supervisor
|
Master of Science (Master)
Humboldt-Universität zu Berlin, Germany
Instituto de Medicina Molecular, Portugal |
2017 - 2018 | Discovery of novel mechanisms of centrosome amplification and their therapeutic value in cancer
Supervisor
|
Oncobiologia - Mecanismos Moleculares do Cancro (Master)
Universidade do Algarve, Portugal
Instituto de Medicina Molecular, Portugal |
2016 - 2016 | Genome-wide profiling of alternative splicing in aging across human tissues: Tissue-specific aging signature and contribution
of cellular senescence
Supervisor
|
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
Instituto de Medicina Molecular, Portugal |
2016 - 2016 | Analysis of the contribution of alternative splicing glioma subtype definition
Supervisor
|
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
Instituto de Medicina Molecular, Portugal |
2016 - 2016 | Alternative splicing during neuronal development
Supervisor
|
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
Instituto de Medicina Molecular, Portugal |
2016 - 2016 | Bioinformatics application for analysis and visualisation of alternative splicing in cancer
Supervisor
|
Informática (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
Instituto de Medicina Molecular, Portugal |
2015 - 2015 | Alternative splicing analysis for finding novel molecular signatures in renal carcinomas
Supervisor
|
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
Instituto de Medicina Molecular, Portugal |
2014 - 2014 | Analyses of alternative splicing landscapes in clear cell renal cell carcinomas reveal putative novel prognosis factors
Supervisor
|
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
Event organisation
Event name Type of event (Role) |
Institution / Organization | |
---|---|---|
2023/10/12 - 2023/10/13 | EMBO Young Scientists Forum (2023/10/12 - 2023/10/13)
Conference (Co-organisor)
|
Instituto de Medicina Molecular, Portugal |
2022/07/12 - 2022/07/12 | RiboMed Satellite Conference on RNA in Disease (2022/07/12 - 2022/07/12)
Symposium
|
Instituto de Medicina Molecular, Portugal |
2012 - 2012 | The Donnelly Centre Postdoctoral Fellows' seminar series and symposium (2012 - 2012)
Symposium
|
Terrence Donnelly Centre for Cellular and Biomolecular Research, Canada |
2007/06/30 - 2007/06/30 | Microarrays in Clinical Oncology - promises and pitfalls (2007/06/30 - 2007/06/30)
Workshop (Co-organisor)
|
Instituto de Medicina Molecular, Portugal |
2007/06/09 - 2007/06/09 | 1st Meeting of Portuguese Students and Researchers in the UK, Cambridge (2007/06/09 - 2007/06/09) |
Event participation
Activity description Type of event |
Event name Institution / Organization |
|
---|---|---|
2023/11/09 - 2023/11/10 | HFP Consulting Leadership and Management Skills Course
Workshop
|
Instituto de Medicina Molecular, Portugal
|
2018/06/30 - 2018/07/03 | Poster presentation: CELF2 at the core of a prognostic alternative splicing signature in colorectal cancer
Conference
|
EACR25: 25th Biennial Congress of the European Association for Cancer Research
European Association For Cancer Research, United Kingdom
|
2018/05/10 - 2018/05/10 | Poster presentation: CELF2 at the core of a prognostic alternative splicing signature in colorectal cancer
Congress
|
3rd ASPIC International Congress
ASPIC - Associação Portuguesa de Investigação em Cancro, Portugal
|
2017/10/22 - 2017/10/25 | Poster presentations: CELF2 at the core of a prognostic alternative splicing signature in colorectal cancer; psichomics -
A bioinformatics application for the quantification, analysis and visualisation of alternative splicing from large transcriptomic
datasets
Conference
|
Forty Years of mRNA Splicing
Cold Spring Harbor Laboratory, United States
|
2016/07/12 - 2016/07/15 | Laboratory Management Course
Workshop
|
European Molecular Biology Organization, Germany
|
2013/06/11 - 2013/06/16 | Poster presentation: The evolutionary landscape of alternative splicing in vertebrate species
Conference
|
RNA 2013 - The 18th Annual Meeting of the RNA Society (Davos, Switzerland)
RNA Society, United States
|
2013/01/03 - 2013/01/07 | Poster presentation: The evolutionary landscape of alternative splicing in vertebrate species
Symposium
|
Pacific Symposium of Biocomputing 2013 (Hawaii)
Stanford University, United States
|
2012/08/19 - 2012/08/23 | Poster presentation: The evolutionary landscape of alternative splicing in vertebrate species
Conference
|
ICSB - The 13th International Conference on Systems Biology
Terrence Donnelly Centre for Cellular and Biomolecular Research, Canada
|
2011/07/15 - 2011/07/16 | Poster presentation: Species-specific differences in alternative splicing are primarily governed by evolutionary changes in
cis-regulatory elements
Conference
|
ISMB/ECCB 2011 - Special Interest Group: Alternative Splicing (Vienna, Austria)
International Society for Computational Biology, United States
|
2011/05/20 - 2011/06/20 | Poster presentation: Establishing determinants of species-specific alternative splicing using mice harboring human chromosome
21
Workshop
|
Workshop on transcriptional and post-transcriptional regulatory codes
Terrence Donnelly Centre for Cellular and Biomolecular Research, Canada
|
2011/02/28 - 2011/03/03 | Poster presentation: Establishing determinants of species-specific alternative splicing using mice harboring human chromosome
21
Conference
|
2nd EURASNET Conference on Alternative Splicing (Granada, Spain) |
2010/08/12 - 2010/08/15 | Poster presentation: Re-annotaion of microarray probes improves the interpretation of cancer gene expression data
Conference
|
RECOMB 2010 (Lisbon, Portugal)
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
|
2010/06/25 - 2010/06/25 | Poster presentation: Re-annotaion of microarray probes improves the interpretation of cancer gene expression data
Symposium
|
Cambridge Cancer Centre Symposium
Cancer Research UK Cambridge Research Institute, United Kingdom
|
2010/05/08 - 2010/05/09 | Science Communication Workshop
Workshop
|
PARSUK, United Kingdom
|
2009/07/06 - 2009/07/08 | Poster presentation: Re-annotation of microarray probes improves the interpretation of cancer gene expression data
Conference
|
Cancer-om-atics: Multilevel interpretation of cancer genome data
Centro Nacional de Investigaciones Oncológicas, Spain
|
2007/06/10 - 2007/06/15 | Poster presentation: Gene Expression Profiles of Pediatric Malignant Germ Cell Tumours
Workshop
|
Statistics for Biomolecular Data Integration and Modeling - Workshop (Ascona, Switzerland)
Eidgenössische Technische Hochschule Zürich, Switzerland
|
2004/11/22 - 2004/11/23 | Poster presentation: Resemblance between Teleost Gene Duplication and Mammalian Alternative Splicing
Symposium
|
Symposium on Alternative Transcript Diversity
European Bioinformatics Institute, United Kingdom
|
Jury of academic degree
Topic Role |
Candidate name (Type of degree) Institution / Organization |
|
---|---|---|
2023/12 | Evolutionary dynamics of post-transcriptional regulation mechanisms in vertebrates
(Thesis) Main arguer
|
Gabriela Santos Rodríguez (PhD)
University of New South Wales, Australia
|
2023/11/21 | Clinical and Molecular Characterization of Sarcomas using Machine Learning with Multiomics Integration
(Thesis) Main arguer
|
Manuel Sérgio Sokolov Ravasqueira (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2023/11/21 | Detection of aberrant terminal exon usage in RNA sequencing data
(Thesis) Main arguer
|
Raquel Alves Romão (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2023/04/20 | Unveiling co-transcriptional splicing kinetics using novel nascent transcriptomic techniques
(Thesis) Main arguer
|
Ana Pereira de Brito Líbano Monteiro (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2023/04/17 | Towards accreditation in metagenomics for clinical microbiology
Thesis Member
|
Catarina Inês Marques de Sousa Mendes (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
|
2023/02/22 | The roles of tubulin post translational modifications in cancer
(Thesis) Arguer
|
Danilo da Silva Lopes (PhD)
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
|
2022/12/21 | A systems approach to the mechanisms of neurodegeneration
(Thesis) Arguer
|
Marina Luque Garcia-Vaquero (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2022/11/30 | Disclosing Transcriptomic Signatures of Gliomas Using Sparse Methods
(Thesis) Main arguer
|
Sofia Matias Coimbra Martins (Master)
Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2022/09/14 | Unravelling longitudinal mitochondrial DNA mutations in Multiple Sclerosis: Association with disease activity and progression
(Thesis) Arguer
|
Filipe Carlos Pereira dos Reis Cortes Figueiredo (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
|
2022/04/15 | Functional interpretation of transcriptome and translatome dynamics in cancer | Marina Reixachs Solé (PhD)
Australian National University, Australia
|
2022/04/12 | SRRM3 regulates a subprogram of highly sensitive microexons important for pancreatic endocrine function
President of the jury
|
Szymon Piotr Bajew (PhD)
Universitat Pompeu Fabra, Spain
Centre de Regulació Genòmica, Spain |
2022/02/09 | Unveiling the regulation of germinal centre responses and antibody production by follicular T cells
(Thesis) Arguer
|
Saumya Dileep Kumar (PhD)
Universidade de Lisboa Faculdade de Medicina, Portugal
|
2022/01/14 | Resolving the complexity of oviduct biology and pathology by comprehensive single-cell sequencing across species
(Thesis) Main arguer
|
Laura Santana González (PhD)
University of Oxford Nuffield Department of Women's & Reproductive Health, United Kingdom
University of Oxford Balliol College, United Kingdom |
2021/12/09 | Unveiling the role of cis-regulatory variation in breast cancer aetiology
(Thesis) Arguer
|
Filipa Alexandra Oleiro Esteves Ribeiros (PhD)
Universidade do Algarve, Portugal
|
2021/06/22 | Effect of the microenvironment on alternative splicing in colorectal cells
(Thesis) Arguer
|
Joana Filipa de Sousa Pereira (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2021/06/16 | Gene Expression and Phenotypical Analysis of Winner and Loser Cells Engaged in Cell Competition
(Thesis) Main arguer
|
Alexandre Miguel Guedes da Silva Afonso (Master)
Universidade de Lisboa Faculdade de Medicina, Portugal
|
2021/02/23 | Network-based sparse regularization for the identification of disease signatures
(Thesis) Arguer
|
André Filipe da Silva Veríssimo (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2021/01/28 | VenCode - A versatile entry code for post-DNA delivery identification of target cel
(Thesis) Arguer
|
André Lopes Martins Macedo (PhD)
Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal
|
2020/07/02 | Epigenetic hotspots in cancer
(Thesis) Main arguer
|
Daniel José Formica Pestana (Master)
Universidade do Algarve, Portugal
|
2020/06/24 | Longitudinal analysis of adipocytes and liver gene expression during T. brucei infection
(Thesis) Main arguer
|
João Francisco Parraga Ribeiro Colaço (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2020/02/28 | Origin and evolution of neural microexons | Antonio Torres Méndez (PhD)
Universitat Pompeu Fabra, Spain
Centre de Regulació Genòmica, Spain |
2019/11/13 | Identification of common gene signatures in microarray and RNA-sequencing data using network-based regularization
(Thesis) Main arguer
|
Maria Inês Cotrim de Vilhena Diegues (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2019/07/23 | Regulation of alternative polyadenylation in Drosophila melanogaster
(Thesis) Main arguer
|
Marta Sofia dos Santos Oliveira (PhD)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
|
2019/02/14 | Alternative splicing dynamics during somatic cell reprogramming
(Thesis) Main arguer
|
Claudia Vivori (PhD)
Universitat Pompeu Fabra, Spain
Centre de Regulació Genòmica, Spain |
2018/12/14 | Functional impact of alternative splicing in vertebrate proteomes across tissues and cell types | Javier Tapial Rodriguez (PhD)
Universitat Pompeu Fabra, Spain
Centre de Regulació Genòmica, Spain |
2018/11/29 | On the Origin, Progression, and Evolution of Ovarian Cancer | Mohammad KaramiNejadRanjbar (PhD)
University of Oxford, United Kingdom
|
2018/11/23 | Network-based Regularisation for Survival Analysis | Pedro Jorge Estrela Martinho (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2018/11/15 | Astrocyte-specific transcriptomic response to PGC-1alpha isoforms | Mariana Messias de Jesus Rufino Ribeiro (Master)
Universidade de Lisboa Faculdade de Farmácia, Portugal
|
2017/12/04 | Modelling cancer progression through joint models for longitudinal and time-to-event data | Hugo Daniel Paes Loureiro Santos Ambrósio (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2017/10/18 | Epigenetic Regulation of Signalling Pathways in Pancreatic Cancer | Inês Correia da Silva Pires Faleiro (Master)
Universidade de Lisboa Faculdade de Farmácia, Portugal
|
2017/05/11 | Large-scale study of RNA processing alterations in multiple cancers | Babita Singh (PhD)
Universitat Pompeu Fabra, Spain
Centre de Regulació Genòmica, Spain |
2015/05/20 | Outlier Detection in Survival Analysis | João Diogo Pinto (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2015/01/20 | Dissecting Central Nervous System Gene Expression | Margherita Francescatto (PhD)
Universidade do Porto, Portugal
|
2015/01/12 | LincRNA profile in clear cell renal cell carcinoma using RNA-seq data | Ioana Posa (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
Instituto de Medicina Molecular, Portugal |
2014/12/05 | Genome-wide profiling of RNA polymerase II and associated co-transcriptional processes using advanced NET-seq data | Tomás Pires de Carvalho Gomes (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
Association member
Society Organization name | Role | |
---|---|---|
2021/11 - Current | RNA Society | |
2021/11 - Current | ASPIC - Associação Portuguesa de Investigação em Cancro | |
2021/11 - Current | EACR - European Association for Cancer Research | |
2010 - Current | PAPS - Portuguese-American Post-graduate Society | Member of the Executive Committee (2015-2018); Co-leader of the Alumni Chapter (2015-2016); Leader of the Toronto Chapter (2011-2013) |
2008 - Current | PARSUK - Portuguese Association of Researchers and Students in the UK | Member |
2003 - Current | Cambridge University Portuguese Speakers Society | Lifetime member |
Committee member
Activity description Role |
Institution / Organization | |
---|---|---|
2022/07 - Current | PhD thesis of Marta Andolfato
Member
|
Instituto de Medicina Molecular, Portugal |
2022/05 - Current | PhD thesis of Eller Conti
Member
|
Instituto de Medicina Molecular, Portugal |
2021/12 - Current | PhD thesis of Jean-Christophe Lone
Member
|
Instituto de Medicina Molecular, Portugal |
2021/11 - Current | PhD thesis of Bárbara Teixeira
Member
|
Instituto de Medicina Molecular, Portugal |
2021/01 - Current | PhD thesis of Rafael Mamede
Member
|
Universidade de Lisboa Faculdade de Medicina, Portugal |
2021 - Current | PhD thesis of Beatriz Silva
Member
|
Universidade de Lisboa Faculdade de Medicina, Portugal Instituto de Medicina Molecular, Portugal |
2021 - Current | PhD thesis of Rui Bernardino
Member
|
Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal |
2020/01 - Current | PhD thesis of Ana Alão Freitas | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2018/03 - Current | PhD thesis of Inês Faleiro | Instituto de Medicina Molecular, Portugal Universidade de Lisboa Faculdade de Medicina, Portugal |
2015/01 - Current | PhD thesis of Bruno Gonçalves | Universidade de Lisboa Faculdade de Medicina, Portugal |
2015 - Current | Commissioner for the Information Systems Unit | Instituto de Medicina Molecular, Portugal |
2018/11 - 2023/05 | PhD thesis of Federica Mantica | Universitat Pompeu Fabra, Spain Centre de Regulació Genòmica, Spain |
2017/03 - 2023/05 | PhD thesis of Rita Soares | Instituto de Medicina Molecular, Portugal Universidade de Lisboa Faculdade de Medicina, Portugal |
2021/10 - 2023/04 | PhD thesis of Inês Mendes
Member
|
Instituto de Medicina Molecular, Portugal |
2016/05 - 2022/02 | PhD thesis of Saumya Dileep Kumar | Instituto de Medicina Molecular, Portugal Universidade de Lisboa Faculdade de Medicina, Portugal |
2018 - 2022 | PhD thesis of Ana Carolina Peixoto
Member
|
Universidade de Lisboa Instituto Superior Técnico, Portugal |
2014 - 2021 | PhD thesis of André Veríssimo
Member
|
Universidade de Lisboa Instituto Superior Técnico, Portugal |
2016/03 - 2020/06 | PhD thesis of Helena Brigas | Instituto de Medicina Molecular, Portugal Universidade de Lisboa Faculdade de Medicina, Portugal |
2015/03 - 2020/01 | PhD thesis of Vasco Conceição | Instituto de Medicina Molecular, Portugal Universidade de Lisboa Faculdade de Medicina, Portugal |
2014/10 - 2015/11 | PhD thesis of Hugo Santos | Universidade de Lisboa Faculdade de Ciências, Portugal |
2013/12 - 2015 | PhD thesis of Fernando Martins | Universidade de Lisboa Faculdade de Medicina, Portugal |
2012 - 2013 | Toronto Bioinformatics User Group (TorBUG) | Terrence Donnelly Centre for Cellular and Biomolecular Research, Canada |
Consulting
Activity description | Institution / Organization | |
---|---|---|
2021 - Current | PhD Scholarship reviewer | Fundação para a Ciência e a Tecnologia, Portugal |
2016 - Current | Grant reviewer | Medical Research Council, United Kingdom Agence nationale de la recherche, France Israel Science Foundation, Israel Biotechnology and Biological Sciences Research Council, United Kingdom Fundação para a Ciência e a Tecnologia, Portugal Worldwide Cancer Research, United Kingdom Narodowe Centrum Nauki, Poland |
Course / Discipline taught
Academic session | Degree Subject (Type) | Institution / Organization | |
---|---|---|---|
2024/02/06 - Current | Systems Biology - Human transcriptomes and cognitive biases | Biociências Moleculares (Doutoramento) | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2023/12/19 - Current | Neuroethics - Biases and incentives in the quest for reproducible science | Neurociências (Mestrado integrado) | Universidade de Lisboa Faculdade de Medicina, Portugal |
2023/10/10 - Current | Bioinformatics - Computational biology in the translation of cancer "omics" | Investigação Biomédica (Mestrado integrado) | Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal |
2023/01/10 - Current | Computational biology and what transcriptomes tell us about disease | Biomedical and Clinical Science (Doutoramento) | Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal |
2022/10/17 - Current | Bioinformatics - Computational biology in the translation of cancer "omics" | Investigação Biomédica (Mestrado integrado) | Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal |
2022/10/14 - Current | Perspectives in Computational Biology - What transcriptomic data tell us about ageing | Biologia Computacional e Bioinformática (Mestrado integrado) | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2021/11/19 - Current | Perspectives in Computational Biology - What transcriptomic data tell us about ageing | Biologia Computacional e Bioinformática (Mestrado) | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2021/01 - Current | Bioinformatics Course | Investigação Biomédica (Mestrado integrado) | Universidade de Lisboa Faculdade de Medicina, Portugal |
2019/12 - Current | Computational Biology | Engenharia Biomédica (Mestrado integrado) | Universidade de Lisboa Instituto Superior Técnico, Portugal |
2018/11 - Current | Bioinformatics Course | Oncobiologia (Mestrado) | Universidade de Lisboa Faculdade de Medicina, Portugal |
2023/04/03 - 2023/04/03 | Applied Computational Multi-Omics - Biologist-intelligible alternative splicing analysis of RNA-seq data | Biologia Computacional e Bioinformática (Mestrado integrado) | Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia, Portugal |
2023/02/07 - 2023/02/07 | Systems Biology - What (single cell) transcriptomes tell us about human disease | Biociências Moleculares (Doutoramento) | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2022/11/09 - 2022/11/09 | Computational Biology in Cancer - Single cell transcriptomics | Neuroscience and Cancer (Doutoramento) | Centro Champalimaud, Portugal |
2022/06/23 - 2022/06/23 | RiboMed Summer School on Modelling Biological Data - Statistical modelling for splicing analyses | Instituto de Medicina Molecular, Portugal | |
2022/04/11 - 2022/04/11 | Applied Computational Multi-Omics - Biologist-intelligible alternative splicing analysis of RNA-seq data | Biologia Computacional e Bioinformática (Mestrado integrado) | Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia, Portugal |
2022/02/17 - 2022/02/17 | Computational biology and what transcriptomes tell us about disease | Biomedical and Clinical Research (Doutoramento) | Instituto de Medicina Molecular, Portugal |
2022/02/08 - 2022/02/08 | Systems Biology - What (single cell) transcriptomes tell us about human disease | Biociências Moleculares (Doutoramento) | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2022/01/31 - 2022/01/31 | Systems Bioengineering - What (single cell) transcriptomes tell us about human disease | Engenharia Biológica (Mestrado integrado) | Universidade de Lisboa Instituto Superior Técnico, Portugal |
2021/10/12 - 2021/10/12 | Bioinformatics - Computational biology in the translation of cancer "omics" | Investigação Biomédica (Mestrado integrado) | Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal |
2021/09/30 - 2021/10/08 | Course in “Ageing Cognition” - The CAJAL advanced neuroscience training programme, Bordeaux School of Neuroscience | Fédération Bordeaux Neurocampus, France | |
2021/04/26 - 2021/04/26 | Computational biology and what transcriptomes tell us about disease | Biomedical and Clinical Research (Doutoramento) | Instituto de Medicina Molecular, Portugal |
2021/03/15 - 2021/03/15 | Computational biology in the translation of disease "omics" | Ciências Biofarmacêuticas (Mestrado integrado) | Universidade de Lisboa Faculdade de Farmácia, Portugal |
2021/02/09 - 2021/02/09 | What transcriptomes tell us about diseases | Biociências Moleculares (Doutoramento) | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2020/10/14 - 2020/10/14 | Bioinformatics - Computational biology in the translation of cancer "omics" | Investigação Biomédica (Mestrado integrado) | Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal |
2020/04/24 - 2020/04/24 | Computational biology in the translation of disease "omics" | Ciências Biofarmacêuticas (Mestrado) | Universidade de Lisboa Faculdade de Farmácia, Portugal |
2020/04/23 - 2020/04/23 | Computational biology in the translation of disease "omics" | Tecnologias Moleculares em Saúde (Mestrado integrado) | Instituto Politécnico de Lisboa Escola Superior de Tecnologia da Saúde de Lisboa, Portugal |
2020/03/03 - 2020/03/03 | Computational biology and what transcriptomes tell us about disease | Biomedical and Clinical Research (Doutoramento) | Instituto de Medicina Molecular, Portugal |
2019/10/18 - 2019/10/18 | Bioinformatics - Computational biology in the translation of cancer "omics" | Investigação Biomédica (Mestrado integrado) | Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal |
2019/10/09 - 2019/10/09 | What transcriptomes tell us about ageing and associated diseases | Biociências Moleculares (Doutoramento) | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2019/05/08 - 2019/05/08 | Bioinformatics - Computational biology in the translation of cancer “omics" | Ciências Biofarmacêuticas (Mestrado) | Universidade de Lisboa Faculdade de Farmácia, Portugal |
2018/10/08 - 2018/10/08 | Bioinformatics - Computational biology in the translation of cancer "omics" | Investigação Biomédica (Mestrado) | Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal |
2018/04/05 - 2018/04/05 | Bioinformatics - Computational biology in the translation of cancer "omics" | Ciências Biofarmacêuticas (Mestrado) | Universidade de Lisboa Faculdade de Farmácia, Portugal |
2018/01/09 - 2018/01/09 | Computational biology and disease transcriptomics | Biomedical and Clinical Research (Doutoramento) | Instituto de Medicina Molecular, Portugal |
2018/01/05 - 2018/01/05 | Bioinformatics - Computational biology in the translation of cancer "omics" | Investigação Biomédica (Mestrado) | Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal |
2017/02/06 - 2017/02/10 | Bioinformatics Course | PGCD, Graduate Program Science for Development (Curso de doutoramento (conclusão de unidades curriculares)) | Instituto Gulbenkian de Ciência, Portugal Universidade de Cabo Verde, Cape Verde |
2017/01/10 - 2017/01/10 | Computational biology and disease transcriptomics | Biomedical and Clinical Research (Doutoramento) | Instituto de Medicina Molecular, Portugal |
2016/10/29 - 2016/10/29 | Biologia Computacional: splicing & cancro | Oncobiologia (Mestrado) | Universidade de Lisboa Faculdade de Medicina, Portugal Instituto de Medicina Molecular, Portugal |
2016/03/30 - 2016/03/31 | NGS Data Analysis, RNAseq, ChIPseq | (Outros) | Instituto Gulbenkian de Ciência, Portugal |
2016/02/22 - 2016/02/26 | Bioinformatics Course | PGCD, Graduate Program Science for Development (Curso de doutoramento (conclusão de unidades curriculares)) | Instituto Gulbenkian de Ciência, Portugal Universidade de Cabo Verde, Cape Verde |
2016/01/05 - 2016/01/05 | Computational biology and disease transcriptomics | Biomedical and Clinical Research (Doutoramento) | Instituto de Medicina Molecular, Portugal |
2015/09/15 - 2015/09/15 | RNA-Seq and disease transcriptomics | Medicines and Pharmaceutical Innovation (i3DU) (Doutoramento) | Universidade de Lisboa Faculdade de Farmácia, Portugal |
2015/07/23 - 2015/07/23 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | Bioinformática e Biologia Computacional (Mestrado) | Universidade de Lisboa Faculdade de Ciências, Portugal |
2015/04/21 - 2015/04/22 | R and Bioconductor Workshop (Computational Biology course) | Ciências Biomédicas (Mestrado integrado) | Universidade do Algarve, Portugal |
2015/01/30 - 2015/01/30 | Alternative splicing in evolution and cancer | Integrative Biology and Biomedicine (Doutoramento) | Instituto Gulbenkian de Ciência, Portugal |
2015/01/07 - 2015/01/07 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | Biomedical and Clinical Research (Doutoramento) | Instituto de Medicina Molecular, Portugal |
2014/07/17 - 2014/07/17 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | Bioinformática e Biologia Computacional (Mestrado) | Universidade de Lisboa Faculdade de Ciências, Portugal |
2014/04/17 - 2014/04/17 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | BioEngineering - Cell Therapies & Regenerative Medicine (Doutoramento) | Instituto de Medicina Molecular, Portugal |
2014/02/27 - 2014/02/27 | Analysis of Transcriptional Regulation and RNA Processing from RNA-Seq Data | Biomedical and Clinical Research (Doutoramento) | Instituto de Medicina Molecular, Portugal |
2014/01/30 - 2014/01/31 | X Summer Bioinformatics Course | Bioinformatics | Universidade de São Paulo Faculdade de Medicina de Ribeirão Preto, Brazil |
2013/07/25 - 2013/07/25 | The evolutionary landscape of alternative splicing in vertebrate species | Bioinformática e Biologia Computacional (Mestrado) | Universidade de Lisboa Faculdade de Ciências, Portugal |
2010/09/06 - 2010/09/10 | Microarray Data Analysis using R and Bioconductor | (Outros) | Instituto Gulbenkian de Ciência, Portugal |
2010/02/24 - 2010/02/26 | Microarray Data Analysis using R and Bioconductor | University of Cambridge Department of Genetics, United Kingdom | |
2010/02/02 - 2010/02/02 | Microarray and high throughput sequencing data analysis with Bioconductor | European Bioinformatics Institute, United Kingdom | |
2010/01/10 - 2010/01/11 | Course in "Microarray Data Analysis using R and BioConductor" | M1GPBIDM option Biotechnology | Université de Poitiers, France |
2009 - 2010 | Systems Biology course - Engineering for Life Sciences | Engineering Tripos | University of Cambridge Department of Engineering, United Kingdom |
2007 - 2010 | Functional Genomics course | MPhil in Computational Biology | University of Cambridge Department of Pure Mathematics and Mathematical Statistics, United Kingdom |
2009/10/12 - 2009/10/17 | EMBO Practical Course on Analysis and Informatics of Microarray Data | European Bioinformatics Institute, United Kingdom | |
2009/09/14 - 2009/09/18 | Microarray Data Analysis using R and Bioconductor | (Outros) | Instituto Gulbenkian de Ciência, Portugal |
2009/06/01 - 2009/06/03 | Microarray Data Analysis using R and Bioconductor | University of Cambridge Department of Genetics, United Kingdom | |
2009/04/13 - 2009/04/17 | Bioinformatics module - Course in "Regulation of Gene Expression" | Basic and Applied Biology (Doutoramento) | Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal |
2009/04/15 - 2009/04/15 | Workshop on Gene Expression: From Genes to Systems | Basic and Applied Biology (Doutoramento) | Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal |
2009/03/11 - 2009/03/13 | Course in "Analysis of DNA expression microarrays" | Computational Biology (Doutoramento) | Instituto Gulbenkian de Ciência, Portugal |
2009/01/19 - 2009/01/22 | Hands-on training at EBI - Transcriptomics | European Bioinformatics Institute, United Kingdom | |
2008/12/01 - 2008/12/03 | Microarray Data Analysis using R and Bioconductor | Universitetet i Oslo, Norway | |
2008/09/29 - 2008/10/03 | Microarray Data Analysis using R and Bioconductor | (Outros) | Instituto Gulbenkian de Ciência, Portugal |
2008/07/21 - 2008/07/25 | Advanced course on mRNA profiling using DNA microarrays | Molecular Genomics (Outros) | Universidade de Aveiro, Portugal |
2007/04 - 2008/02 | Four 3-day introductory microarray analysis courses | Cancer Research UK Cambridge Research Institute, United Kingdom | |
2008/01/29 - 2008/01/29 | Hands-on training at EBI - Transcriptomics | European Bioinformatics Institute, United Kingdom | |
2007/10/15 - 2007/10/19 | Introductory Course on Microarray Data Analysis | (Outros) | Instituto Gulbenkian de Ciência, Portugal |
2007/05/24 - 2007/05/24 | R and Bioconductor | Microarray Data Analysis (The Norwegian Microarray Consortium) | Universitetet i Oslo, Norway |
2006/08/28 - 2006/09/01 | "Microarray Technology and Bioinformatics" Summer School | Università degli Studi di Camerino, Italy | |
2004/10/13 - 2004/10/19 | "Splicing & Bioinformatics" module - Course in "mRNA biogenesis" | Biomedicine (Doutoramento) | Instituto Gulbenkian de Ciência, Portugal |
2004/03/15 - 2004/03/19 | "Splicing & Bioinformatics" module - Course in "Genetic Evolution" | Basic and Applied Biology (Doutoramento) | Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal |
2004/01/07 - 2004/01/07 | Splicing & Bioinformatics | Engenharia Biomédica e Biofísica (Curso de mestrado (conclusão do curso de especialização)) | Universidade de Lisboa Faculdade de Ciências, Portugal |
2003/10/14 - 2003/10/17 | "Splicing & Bioinformatics" module - Course in "mRNA biogenesis" | Biomedicine (Doutoramento) | Instituto Gulbenkian de Ciência, Portugal |
1999 - 2001 | Circuit Theory and Fundamentals of Electronics | Physics Engineering (Licenciatura) | Universidade de Lisboa Instituto Superior Técnico, Portugal |
Journal scientific committee
Journal title (ISSN) | Publisher | |
---|---|---|
2010 - 2022 | BMC Bioinformatics (1471-2105) | Springer (Biomed Central Ltd.) |
2010 - 2021 | BMC Cancer (1471-2407) | Springer (Biomed Central Ltd.) |
Mentoring / Tutoring
Topic | Student name | |
---|---|---|
2022/09 - 2022/11 | Visiting fellow | Claudia Cifuentes |
2020/03 - 2021/12 | GenomePT Fellowship | Rita Belo |
2019/03 - 2020/01 | Volunteer trainee | Ana Sofia Borges |
2018/04 - 2018/06 | Visiting fellow | Javier Tapial |
2015/11 - 2018 | Postdoc (FCT fellow) co-supervisor | Joana Xavier |
2015 - 2018 | Postdoc supervisor | Lina Gallego-Paez |
2016/04 - 2016/07 | Visiting fellow | Juan Carlos Gomez Verjan |
2015/07 - 2015/09 | Summer trainee | Mariana Ascensão Ferreira |
2007 - 2007 | Summer project of MPhil in Computational Biology, University of Cambridge, UK | Julie Addison |
2001 - 2002 | Mentor of Biomedical Engineering 1st year students | 1st year students, Biomedical Engineering - Instituto Superior Técnico |
Other jury / evaluation
Activity description | Institution / Organization | |
---|---|---|
2023/11/23 - 2023/11/25 | Abstract and oral presentation evaluator, 27th Annual Meeting of the Portuguese Human Genetics Society, Lisbon, Portugal | Sociedade Portuguesa de Genética Humana, Portugal |
2021 - 2021 | Abstract evaluator, iMed Conference 13.0 | Universidade Nova de Lisboa Faculdade de Ciências Médicas, Portugal |
2015/08/05 - 2015/08/08 | Poster judge, 5th EMBO Meeting, Birmingham UK | European Molecular Biology Organization, Germany |
Distinctions
Title
2021 | Citizen of Merit
Câmara Municipal de Viana do Castelo, Portugal
|
Other distinction
2020 | FCT Stimulus of Scientific Employment, Individual Support - Assistant Researcher
Fundação para a Ciência e a Tecnologia, Portugal
|
2014 | Investigador FCT - Starting Grant
Fundação para a Ciência e a Tecnologia, Portugal
|
2014 | EMBO Installation Grant
European Molecular Biology Organization, Germany
|
2011 | Marie Curie International Outgoing Fellowship
European Commission, Belgium
|
2010 | CIHR Postdoctoral Fellowship
Canadian Institutes of Health Research, Canada
|
2005 | EMBO Short-Term Fellowship
European Molecular Biology Organization, Germany
|
2000 | Fellowship PRAXIS XXI SFRH/BD (PhD)
Fundação para a Ciência e a Tecnologia, Portugal
|
2000 | Fellowship “Programa de Estágios no Ensino Superior”
European Social Fund, Belgium
Ministério da Educação, Portugal |