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I am the Professor of Palaeogenomics at the University of Copenhagen (Denmark), Professor II at NTNU University Museum (Norway), and Director of the Danish National Research Foundation Center for Evolutionary Hologenomics. My research interests span the development and implementation of new techniques in palaeogenomics, to combining host genome alongside their associated microbiome data when addressing questions of both basic and applied scientific relevance. In the context of the collapse and extinction of species, my team are generating and analysed temporal genomic datasets of a range of mammal and bird species, in order to address questions such as how to species specific traits condition the genomic consequences to population collapse, and what are the technical limits to ancient genome reconstruction.
Identificação

Identificação pessoal

Nome completo
Marcus Thomas Pius Gilbert

Nomes de citação

  • Gilbert, Marcus
  • M Thomas P Gilbert

Identificadores de autor

Ciência ID
F11D-DE83-D4EF
ORCID iD
0000-0002-5805-7195

Telefones

Telemóvel
  • (+45) 23712519 (Profissional)

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Biologia da Evolução das Espécies

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Inglês (Idioma materno)
Dinamarquês Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador independente (B2) Utilizador proficiente (C1) Utilizador proficiente (C1)
Formação
Grau Classificação
2003 - 2005
Concluído
Post-doctoral Research Associate (Postgraduate Certificate)
The University of Arizona Department of Ecology and Evolutionary Biology, Estados Unidos
2000 - 2003
Concluído
D.Phil (Doctor of Philosophy)
University of Oxford New College, Reino Unido
"An assessment of the use of human samples in ancient DNA studies" (TESE/DISSERTAÇÃO)
1997 - 2000
Concluído
BA Biological Sciences (Bachelor (1.º ciclo de estudos))
University of Oxford Oriel College, Reino Unido
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento
Empregador
2019 - 2019 Investigador principal (carreira) (Investigação) Københavns Universitet Globe Institute, Dinamarca
2011 - 2018 Investigador principal (carreira) (Investigação) Københavns Universitet Statens Naturhistoriske Museum, Dinamarca
2005 - 2007 Pós-doutorado (Investigação) Københavns Universitet Niels Bohr Instituttets Bibliotek, Dinamarca

Docência no Ensino Superior

Categoria Profissional
Instituição de acolhimento
Empregador
2016 - Atual Professor Catedrático (Docente Universitário) Norges teknisk-naturvitenskapelige universitet Vitenskapsmuseet, Noruega
2011 - 2011 Professor Catedrático (Docente Universitário) Københavns Universitet Statens Naturhistoriske Museum, Dinamarca
2009 - 2010 Professor Associado (Docente Universitário) Københavns Universitet Statens Naturhistoriske Museum, Dinamarca
2008 - 2008 Professor Associado (Docente Universitário) Københavns Universitet Biologisk Institut, Dinamarca

Cargos e Funções

Categoria Profissional
Instituição de acolhimento
Empregador
2020 - 2020 Director de Unidade Orgânica Danmarks Grundforskningsfond, Dinamarca
Produções

Publicações

Artigo em conferência
  1. James Doonan; K.B. Budde; Albin Lobo; Chatchai Kosawang; R. Verbylaite; A. Pliura; B. Ulaszewski; et al. "Genome-wide re-sequencing reveals the adaptive potential of European ash (Fraxinus excelsior)". 2022.
  2. D. Maghradze; A. Aslanishvili; I. Mdinaradze; D. Tkemaladze; L. Mekhuzla; D. Lordkipanidze; M. Jalabadze; et al. "Progress for research of grape and wine culture in Georgia, the South Caucasus". 2019.
    10.1051/bioconf/20191203003
  3. Anne Lisbeth Schmidt; M Thomas P Gilbert; Enrico Cappellini; Jesper Olsen. "Identification of animal species in skin clothing from museum collections". 2011.
Artigo em revista
  1. Jan Laine; Sarah S.T. Mak; Nuno F.G. Martins; Xihan Chen; M. Thomas P. Gilbert; Felicity C. Jones; Mikkel Winther Pedersen; Anders Romundset; Andrew D. Foote. "Late Pleistocene stickleback environmental genomes reveal the chronology of freshwater adaptation". Current Biology (2024): https://doi.org/10.1016/j.cub.2024.01.056.
    10.1016/j.cub.2024.01.056
  2. Caroline Isabel Kothe; Jacob Agerbo Rasmussen; Sarah Mak; M Thomas P Gilbert; Joshua Evans. "Exploring the microbial diversity of novel misos with metagenomics". Food Microbiology 117 (2024): https://curis.ku.dk/portal/en/publications/exploring-the-microbial-diversity-of-novel-misos-with-metagenomics(9b3a4586-a4a8-422a-87cc-060770cc22f4).html.
    10.1016/j.fm.2023.104372
  3. Cátia Lúcio Pereira; Zeynep Ersoy; M Thomas P Gilbert; Dominique Gravel; Miguel B Araújo; Miguel G Matias. "Future-proofing environmental DNA and trait-based predictions of food webs". BioScience (2023): https://doi.org/10.1093/biosci/biad089.
    10.1093/biosci/biad089
  4. Germán Hernández-Alonso; Jazmín Ramos-Madrigal; Hein van Grouw; Marta Maria Ciucani; Emily Louisa Cavill; Mikkel-Holger S Sinding; Shyam Gopalakrishnan; et al. "Redefining the Evolutionary History of the Rock Dove, Columba livia, Using Whole Genome Sequences". Molecular Biology and Evolution (2023): https://doi.org/10.1093/molbev/msad243.
    10.1093/molbev/msad243
  5. Linett Rasmussen; Claudia Fontsere; Iván D. Soto-Calderón; Rosamira Guillen; Anne Savage; Anders Johannes Hansen; Christina Hvilsom; M. Thomas P. Gilbert. "Assessing the genetic composition of cotton-top tamarins (Saguinus oedipus) before sweeping anthropogenic impact". Molecular Ecology (2023): https://doi.org/10.1111/mec.17130.
    10.1111/mec.17130
  6. Ostaizka Aizpurua; Kees Blijleven; Urvish Trivedi; M. Thomas P. Gilbert; Antton Alberdi. "Unravelling animal–microbiota evolution on a chip". Trends in Microbiology (2023): https://doi.org/10.1016/j.tim.2023.04.010.
    10.1016/j.tim.2023.04.010
  7. Jacob A Rasmussen; Pia Kiilerich; Abdullah S Madhun; Rune Waagbø; Erik-Jan R Lock; Lise Madsen; M Thomas P Gilbert; Karsten Kristiansen; Morten T Limborg. "Co-diversification of an intestinal Mycoplasma and its salmonid host". The ISME Journal (2023): https://doi.org/10.1038/s41396-023-01379-z.
    10.1038/s41396-023-01379-z
  8. Christina Lehmkuhl Noer; Morten T. Limborg; Sandra Breum Andersen; M Thomas P Gilbert; Simon Bahrndorff; Signe Lolle. "Temanummer om hologenomik i Kaskelot". Kaskelot 245 (2023): 12-33. https://curis.ku.dk/portal/en/publications/temanummer-om-hologenomik-i-kaskelot(52155e58-7bff-476f-a2c6-4084ecd67ce8).html.
  9. Ryan R. Germain; Shaohong Feng; Guangji Chen; Gary R. Graves; Joseph A. Tobias; Carsten Rahbek; Fumin Lei; et al. "Species-specific traits mediate avian demographic responses under past climate change". Nature Ecology & Evolution (2023): https://doi.org/10.1038/s41559-023-02055-3.
    10.1038/s41559-023-02055-3
  10. Amanda Bolt Botnen; Mads Bjørn Bjørnsen; Antton Alberdi; M.Thomas P. Gilbert; Ostaizka Aizpurua. "A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies". Heliyon (2023): https://doi.org/10.1016/j.heliyon.2023.e12861.
    10.1016/j.heliyon.2023.e12861
  11. Pnina Cohen; Roberto Bacilieri; Jazmín Ramos-Madrigal; Eyal Privman; Elisabetta Boaretto; Audrey Weber; Daniel Fuks; et al. "Ancient DNA from a lost Negev Highlands desert grape reveals a Late Antiquity wine lineage". PNAS 120 17 (2023): https://curis.ku.dk/portal/en/publications/ancient-dna-from-a-lost-negev-highlands-desert-grape-reveals-a-late-antiquity-wine-lineage(f64e8c6a-6318-4f87-81ea-9530d088a737).html.
    10.1073/pnas.2213563120
  12. Marta Maria Ciucani; Jazmín Ramos-Madrigal; Germán Hernández-Alonso; Alberto Carmagnini; Sabhrina Gita Aninta; Xin Sun; Camilla Hjorth Scharff-Olsen; et al. "The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs". iScience 26 8 (2023): https://curis.ku.dk/portal/en/publications/the-extinct-sicilian-wolf-shows-a-complex-history-of-isolation-and-admixture-with-ancient-dogs(c6ef927d-98cc-4b9d-8972-2f0ddb399b10).html.
    10.1016/j.isci.2023.107307
  13. Fátima Sánchez Barreiro; Binia De Cahsan; Michael V Westbury; Xin Sun; Ashot Margaryan; Claudia Fontsere; Michael W. Bruford; et al. "Historic Sampling of a Vanishing Beast". Molecular Biology and Evolution 40 9 (2023): https://curis.ku.dk/portal/en/publications/historic-sampling-of-a-vanishing-beast(3707d6fd-869f-4a8b-bdd5-a7df842830c9).html.
    10.1093/molbev/msad180
  14. Edward S. Rice; Antton Alberdi; James Alfieri; Giridhar Athrey; Jennifer R. Balacco; Philippe Bardou; Heath Blackmon; et al. "A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants". BMC Biology 21 (2023): https://curis.ku.dk/portal/en/publications/a-pangenome-graph-reference-of-30-chicken-genomes-allows-genotyping-of-large-and-complex-structural-variants(90a96d3d-9104-4710-98a2-0c0602d96a80).html.
    10.1186/s12915-023-01758-0
  15. Xin Sun; Yue Chen Liu; Mikhail P. Tiunov; Dmitry O. Gimranov; Yan Zhuang; Yu Han; Carlos A. Driscoll; et al. "Ancient DNA reveals genetic admixture in China during tiger evolution". Nature Ecology and Evolution 7 11 (2023): 1914-1929. https://curis.ku.dk/portal/en/publications/ancient-dna-reveals-genetic-admixture-in-china-during-tiger-evolution(d9b49fca-84a7-44e2-b9b0-50fff611d50a).html.
    10.1038/s41559-023-02185-8
  16. Marcela Sandoval-Velasco; Anuradha Jagadeesan; Jazmín Ramos-Madrigal; María C. Ávila-Arcos; Cesar A. Fortes-Lima; Judy Watson; Erna Johannesdóttir; et al. "The ancestry and geographical origins of St Helena's liberated Africans". American Journal of Human Genetics 110 9 (2023): 1590-1599. https://curis.ku.dk/portal/en/publications/the-ancestry-and-geographical-origins-of-st-helenas-liberated-africans(c3692449-d429-4d71-b9e4-d685d9de9863).html.
    10.1016/j.ajhg.2023.08.001
  17. Mikkel Skovrind; George Pacheco; Emil Aputsiaq Flindt Christensen; Shyam Gopalakrishnan; Katharina Fietz; Tore Hejl Holm-Hansen; Filipe G Vieira; et al. "Uncovering neutral and adaptive genomic differentiation among European perch with brackish water and freshwater origin in the western Baltic Sea region". Fisheries Research 268 (2023): https://curis.ku.dk/portal/en/publications/uncovering-neutral-and-adaptive-genomic-differentiation-among-european-perch-with-brackish-water-and-freshwater-origin-in-the-western-baltic-sea-region(653dbf33-4edf-473c-b174-e6ea84c40763).html.
    10.1016/j.fishres.2023.106846
  18. Germán Hernández-Alonso; Jazmín Ramos-Madrigal; Xin Sun; Camilla Hjorth Scharff-Olsen; Mikkel-Holger S. Sinding; Nuno F. Martins; Marta Maria Ciucani; et al. "Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing". Ecology and Evolution 13 8 (2023): https://curis.ku.dk/portal/en/publications/conservation-implications-of-elucidating-the-korean-wolf-taxonomic-ambiguity-through-wholegenome-sequencing(46c4f2ff-1273-4689-b107-504e2097da95).html.
    10.1002/ece3.10404
  19. David Díez-del-Molino; Marianne Dehasque; J. Camilo Chacón-Duque; Patrícia Pecnerová; Alexei Tikhonov; Albert Protopopov; Valeri Plotnikov; et al. "Genomics of adaptive evolution in the woolly mammoth". Current Biology 33 9 (2023): https://curis.ku.dk/portal/en/publications/genomics-of-adaptive-evolution-in-the-woolly-mammoth(7b56f2bf-5e04-49b3-b366-7d8b863f4d2d).html.
    10.1016/j.cub.2023.03.084
  20. Søren B. Hansen; Davide Bozzi; Sarah Mak; Cecilie G. Clausen; Tue Nielsen; Miyako Kodama; Lars Hestbjerg Hansen; M Thomas P Gilbert; Morten T. Limborg. "Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition". Genomics 115 3 (2023): https://curis.ku.dk/portal/en/publications/intestinal-epigenotype-of-atlantic-salmon-salmo-salar-associates-with-tenacibaculosis-and-gut-microbiota-composition(2ec5d086-07c2-4d39-b4c9-caab09a8731c).html.
    10.1016/j.ygeno.2023.110629
  21. Pei Zhang; Yuanzhen Zhu; Qunfei Guo; Ji Li; Xiaoyu Zhan; Hao Yu; Nianxia Xie; et al. "On the origin and evolution of RNA editing in metazoans". Cell Reports 42 2 (2023): https://curis.ku.dk/portal/en/publications/on-the-origin-and-evolution-of-rna-editing-in-metazoans(3c0f420b-f62d-48c3-b6aa-64c76767c252).html.
    10.1016/j.celrep.2023.112112
  22. Ricardo Rodríguez-Varela; Kristjan H. S. Moore; S. Sunna Ebenesersdóttir; Gulsah Merve Kilinc; Anna Kjellström; Ludvig Papmehl-Dufay; Clara Alfsdotter; et al. "The genetic history of Scandinavia from the Roman Iron Age to the present". Cell 186 1 (2023): 32-46.e19. https://curis.ku.dk/portal/en/publications/the-genetic-history-of-scandinavia-from-the-roman-iron-age-to-the-present(e3f68ee9-2b38-443d-ab9f-829cb939e994).html.
    10.1016/j.cell.2022.11.024
  23. Ryan Ross Germain; Shaohong Feng; Lucas Buffan; Carlos P. Carmona; Guangii Chen; Gary R. Graves; Joseph A. Tobias; et al. "Changes in the functional diversity of modern bird species over the last million years". PNAS 120 7 (2023): https://curis.ku.dk/portal/en/publications/changes-in-the-functional-diversity-of-modern-bird-species-over-the-last-million-years(db53b3a4-3de6-4924-8024-953f265b57d5).html.
    10.1073/pnas.2201945119
  24. Renita Danabalan; Kevin Merkel; Ida Bærholm Schnell; Mimi Arandjelovic; Christophe Boesch; Gregory Brazzola; Paula Dieguez; et al. "Mammal mitogenomics from invertebrate-derived DNA". Environmental DNA 5 5 (2023): 1004-1015. https://curis.ku.dk/portal/en/publications/mammal-mitogenomics-from-invertebratederived-dna(f4669a36-23ad-4e1b-8dad-ab83de16bdbb).html.
    10.1002/edn3.436
  25. Lucie A. Bergeron; Søren Besenbacher; Jiao Zheng; Panyi Li; Mads Frost Bertelsen; Benoit Quintard; Joseph I. Hoffman; et al. "Evolution of the germline mutation rate across vertebrates". Nature 615 (2023): 285-291. https://curis.ku.dk/portal/en/publications/evolution-of-the-germline-mutation-rate-across-vertebrates(d860ae92-55e6-4e4e-9ee1-480f62617565).html.
    10.1038/s41586-023-05752-y
  26. Charles Christian Riis Hansen; Áki Jarl Láruson; Jacob Agerbo Rasmussen; Jesus Adrian Chimal Ballesteros; Mikkel-Holger S. Sinding; Gunnar T. Hallgrimsson; Menja von Schmalensee; et al. "Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla)". Molecular Ecology 32 8 (2023): 1925-1942. https://curis.ku.dk/portal/en/publications/genomic-diversity-and-differentiation-between-island-and-mainland-populations-of-whitetailed-eagles-haliaeetus-albicilla(a2fb2cfb-b13a-40b4-b661-27d51a378489).html.
    10.1111/mec.16858
  27. Xin Sun; Marta Maria Ciucani; Jacob Agerbo Rasmussen; M. Thomas P. Gilbert; Mikkel-Holger S. Sinding. "Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species". BMC Ecology and Evolution (2022): https://doi.org/10.1186/s12862-022-02062-1.
    10.1186/s12862-022-02062-1
  28. Emily Louisa Cavill; Shanlin Liu; Xin Zhou; M. Thomas P. Gilbert. "To bee, or not to bee? One leg is the question". Molecular Ecology Resources (2022): https://doi.org/10.1111/1755-0998.13578.
    10.1111/1755-0998.13578
  29. Livia V. Patrono; Bram Vrancken; Matthias Budt; Ariane Düx; Sebastian Lequime; Sengül Boral; M. Thomas P. Gilbert; et al. "Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic". Nature Communications (2022): https://doi.org/10.1038/s41467-022-29614-9.
    10.1038/s41467-022-29614-9
  30. Evelyn L. Jensen; David Díez-del-Molino; M. Thomas P. Gilbert; Laura D. Bertola; Filipa Borges; Vlatka Cubric-Curik; Miguel de Navascués; et al. "Ancient and historical DNA in conservation policy". Trends in Ecology & Evolution 37 5 (2022): 420-429. https://doi.org/10.1016/j.tree.2021.12.010.
    10.1016/j.tree.2021.12.010
  31. Antton Alberdi; Sandra B. Andersen; Morten T. Limborg; Robert R. Dunn; M. Thomas P. Gilbert. "Disentangling host–microbiota complexity through hologenomics". Nature Reviews Genetics (2022): https://doi.org/10.1038/s41576-021-00421-0.
    10.1038/s41576-021-00421-0
  32. Jacob Agerbo Rasmussen; Kasper Rømer Villumsen; Madeleine Ernst; Martin Hansen; Torunn Forberg; Shyam Gopalakrishnan; M. Thomas P. Gilbert; et al. "A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)". Microbiome (2022): https://doi.org/10.1186/s40168-021-01221-8.
    10.1186/s40168-021-01221-8
  33. Ricardo Cardoso Neves; Ask Møbjerg; Miyako Kodama; Jazmín Ramos-Madrigal; M Thomas P Gilbert; Nadja Møbjerg. "Differential expression profiling of heat stressed tardigrades reveals major shift in the transcriptome". Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology 267 (2022): https://curis.ku.dk/portal/en/publications/differential-expression-profiling-of-heat-stressed-tardigrades-reveals-major-shift-in-the-transcriptome(e6ac5cd2-5070-4c87-b047-f9cb8cfcc4df).html.
    10.1016/j.cbpa.2022.111169
  34. Beatrice Demarchi; Josefin Stiller; Alicia Grealy; Meaghan Mackie; Yuan Deng; M Thomas P Gilbert; Julia Clarke; et al. "Ancient proteins resolve controversy over the identity of Genyornis eggshell". PNAS 119 43 (2022): https://curis.ku.dk/portal/en/publications/ancient-proteins-resolve-controversy-over-the-identity-of-genyornis-eggshell(562fc0a1-e407-4a52-ad24-732d85e8a5ff).html.
    10.1073/pnas.2109326119
  35. Anders Bergström; David W. G. Stanton; Ulrike H. Taron; Laurent Frantz; Mikkel-Holger S. Sinding; Erik Ersmark; Saskia Pfrengle; et al. "Grey wolf genomic history reveals a dual ancestry of dogs". Nature 607 7918 (2022): 313-320. https://curis.ku.dk/portal/en/publications/grey-wolf-genomic-history-reveals-a-dual-ancestry-of-dogs(56acb259-71bf-4a15-8ca4-ec29700175a3).html.
    10.1038/s41586-022-04824-9
  36. Ask Møbjerg; Miyako Kodama; Jazmín Ramos-Madrigal; Ricardo Cardoso Neves; Aslak Jørgensen; Morten Schiøtt; M Thomas P Gilbert; Nadja Møbjerg. "Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription". Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology 271 (2022): https://curis.ku.dk/portal/en/publications/extreme-freezetolerance-in-cryophilic-tardigrades-relies-on-controlled-ice-formation-but-does-not-involve-significant-change-in-transcription(af6380e4-d3f9-4039-97d6-332a5abc35d9).html.
    10.1016/j.cbpa.2022.111245
  37. Adam Koziol; Iñaki Odriozola; Lasse Nyholm; Aoife Leonard; Carlos San Jose; Joana Pauperio; Clara Ferreira; et al. "Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals". MicrobiologyOpen 11 5 (2022): https://curis.ku.dk/portal/en/publications/enriching-captivity-conditions-with-natural-elements-does-not-prevent-the-loss-of-wildlike-gut-microbiota-but-shapes-its-compositional-variation-in-two-small-mammals(8bd54553-b599-446b-9adb-0df95d7f107e).html.
    10.1002/mbo3.1318
  38. Matt A. Field; Sonu Yadav; Olga Dudchenko; Meera Esvaran; Benjamin D. Rosen; Ksenia Skvortsova; Richard J. Edwards; et al. "The Australian dingo is an early offshoot of modern breed dogs". Science Advances 8 16 (2022): https://curis.ku.dk/portal/en/publications/the-australian-dingo-is-an-early-offshoot-of-modern-breed-dogs(d7022251-61dd-490f-be60-3a5c053a18f4).html.
    10.1126/sciadv.abm5944
  39. Christina Lynggaard; Alejandro Oceguera-Figueroa; Sebastian Kvist; M Thomas P Gilbert; Kristine Bohmann. "The potential of aquatic bloodfeeding and nonbloodfeeding leeches as a tool for iDNA characterisation". Molecular Ecology Resources 22 2 (2022): 539-553. https://curis.ku.dk/portal/en/publications/the-potential-of-aquatic-bloodfeeding-and-nonbloodfeeding-leeches-as-a-tool-for-idna-characterisation(35c4a1b9-4ca6-419b-a171-ef9385ee2c06).html.
    10.1111/1755-0998.13486
  40. Vanessa C. Bieker; Paul Battlay; Bent Petersen; Xin Sun; Jonathan Wilson; Jaelle C. Brealey; François Bretagnolle; et al. "Uncovering the genomic basis of an extraordinary plant invasion". Science Advances 8 34 (2022): https://curis.ku.dk/portal/en/publications/uncovering-the-genomic-basis-of-an-extraordinary-plant-invasion(ace550fd-44b6-4748-93d3-4224846d6555).html.
    10.1126/sciadv.abo5115
  41. José Cerca; Bent Petersen; José Miguel Lazaro-Guevara; Angel Rivera-Colón; Siri Birkeland; Joel Vizueta; Siyu Li; et al. "The genomic basis of the plant island syndrome in Darwin’s giant daisies". Nature Communications 13 (2022): https://curis.ku.dk/portal/en/publications/the-genomic-basis-of-the-plant-island-syndrome-in-darwins-giant-daisies(dc65f041-f8b7-4375-b1bb-2fc5fdd01abc).html.
    10.1038/s41467-022-31280-w
  42. Núria Tous; Sofia Marcos; Farshad Goodarzi Boroojeni; Ana Pérez de Rozas; Jürgen Zentek; Andone Estonba; Dorthe Sandvang; et al. "Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics". Frontiers in Physiology 13 (2022): https://curis.ku.dk/portal/en/publications/novel-strategies-to-improve-chicken-performance-and-welfare-by-unveiling-hostmicrobiota-interactions-through-hologenomics(17088842-461d-4754-8c1c-348512aacb5b).html.
    10.3389/fphys.2022.884925
  43. Giulio Formenti; Kathrin Theissinger; Carlos Fernandes; Iliana Bista; Aureliano Bombarely; Christoph Bleidorn; Claudio Ciofi; et al. "The era of reference genomes in conservation genomics". Trends in Ecology and Evolution 37 3 (2022): 197-202. https://curis.ku.dk/portal/en/publications/the-era-of-reference-genomes-in-conservation-genomics(ecbe7ef3-aa3c-47f7-95da-661c294407ad).html.
    10.1016/j.tree.2021.11.008
  44. Jianqing Lin; David A. Duchêne; Christian Carøe; Oliver Smith; Marta Maria Ciucani; Jonas Niemann; Douglas Richmond; et al. "Probing the genomic limits of de-extinction in the Christmas Island rat". Current Biology 32 7 (2022): 1650-1656.e3. https://curis.ku.dk/portal/en/publications/probing-the-genomic-limits-of-deextinction-in-the-christmas-island-rat(dcd4798b-6fa0-4ba1-85ca-28dbe05ae313).html.
    10.1016/j.cub.2022.02.027
  45. Natalie Iwanycki Ahlstrand; Shyam Gopalakrishnan; Filipe G Vieira; Vanessa C. Bieker; Heidi M. Meudt; Stephanie Dunbar-Co; Carl J. Rothfels; et al. "Travel Tales of a Worldwide Weed". Frontiers in Plant Science 13 (2022): https://curis.ku.dk/portal/en/publications/travel-tales-of-a-worldwide-weed(41d2d4e5-2332-46ec-af9c-c4da7cc95336).html.
    10.3389/fpls.2022.838166
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  415. Haile, James; Holdaway, Richard; Oliver, Karen; Bunce, Michael; Gilbert, M. Thomas P.; Nielsen, Rasmus; Munch, Kasper; et al. "Ancient DNA chronology within sediment deposits: Are paleobiological reconstructions possible and is DNA leaching a factor?". Molecular Biology and Evolution 24 4 (2007): 982-989. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000245353200011&KeyUID=WOS:000245353200011.
    10.1093/molbev/msm016
  416. Toepf, A. L.; Gilbert, M. T. P.; Fleischer, R. C.; Hoelzel, A. R.. "Ancient human mtDNA genotypes from England reveal lost variation over the last millennium". Biology Letters 3 5 (2007): 550-553. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000249421800028&KeyUID=WOS:000249421800028.
    10.1098/rsbl.2007.0269
  417. Gilbert, M. Thomas P.; Moore, Wendy; Melchior, Linea; Worobey, Michael. "DNA Extraction from Dry Museum Beetles without Conferring External Morphological Damage". Plos One 2 3 (2007): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000207444700007&KeyUID=WOS:000207444700007.
    10.1371/journal.pone.0000272
  418. Hebsgaard, Martin B.; Wiuf, Carsten; Gilbert, M. Thomas P.; Glenner, Henrik; Willerslev, Eske. "Evaluating neanderthal genetics and phylogeny". Journal of Molecular Evolution 64 1 (2007): 50-60. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000243047800005&KeyUID=WOS:000243047800005.
    10.1007/s00239-006-0017-y
  419. Malmstrom, Helena; Svensson, Emma M.; Gilbert, M. Thomas P.; Willerslev, Eske; Gotherstrom, Anders; Holmlund, Gunilla. "More on contamination: The use of asymmetric molecular behavior to identify authentic ancient human DNA". Molecular Biology and Evolution 24 4 (2007): 998-1004. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000245353200013&KeyUID=WOS:000245353200013.
    10.1093/molbev/msm015
  420. Binladen, Jonas; Gilbert, M. Thomas P.; Campos, Paula F.; Willerslev, Eske. "5 '-Tailed sequencing primers improve sequencing quality of PCR products". Biotechniques 42 2 (2007): 172-+. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000248949000017&KeyUID=WOS:000248949000017.
    10.2144/000112316
  421. Binladen, Jonas; Gilbert, M. Thomas P.; Willerslev, Eske. "800000 year old mammoth DNA, modern elephant DNA or PCR artefact?". Biology Letters 3 1 (2007): 55-56. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000243485800016&KeyUID=WOS:000243485800016.
    10.1098/rsbl.2006.0537
  422. Gilbert, M.T.P.; Djurhuus, D.; Melchior, L.; Lynnerup, N.; Worobey, M.; Wilson, A.S.; Andreasen, C.; Dissing, J.. "Erratum: mtDNA from hair and nail clarifies the genetic relationship of the 15th century Qilakitsoq Inuit mummies (American Journal of Physical Anthropology (2007) 133, (847-853))". American Journal of Physical Anthropology 133 4 (2007): http://www.scopus.com/inward/record.url?eid=2-s2.0-34547431146&partnerID=MN8TOARS.
    10.1002/ajpa.20675
  423. Johnson, S.S.; Hebsgaard, M.B.; Christensen, T.R.; Mastepanov, M.; Nielsen, R.; Munch, K.; Brand, T.; et al. "Ancient bacteria show evidence of DNA repair". Proceedings of the National Academy of Sciences of the United States of America 104 36 (2007): 14401-14405. http://www.scopus.com/inward/record.url?eid=2-s2.0-35448994420&partnerID=MN8TOARS.
    10.1073/pnas.0706787104
  424. A. Vuissoz; M. Worobey; N. Odegaard; M. Bunce; C.A. Machado; Niels Lynnerup; E.E. Peacock; M Thomas P Gilbert. "The survival of PCR-amplifiable DNA in cow leather15". Journal of Archaeological Science 34 5 (2007): 823-829. https://curis.ku.dk/portal/en/publications/the-survival-of-pcramplifiable-dna-in-cow-leather15(5ddedc00-20ec-11dd-bc23-000ea68e967b).html.
  425. Gilbert, M. Thomas P.; Djurhuus, Durita; Melchior, Linea; Lynnerup, Niels; Worobey, Michael; Wilson, Andrew S.; Andreasen, Claus; Dissing, Jørgen. "mtDNA from hair and nail clarifies the genetic relationship of the 15th century Qilakitsoq Inuit mummies". American Journal of Physical Anthropology 133 2 (2007): 847-853. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000246657300012&KeyUID=WOS:000246657300012.
    10.1002/ajpa.20602
  426. Binladen, Jonas; Gilbert, M. Thomas P.; Bollback, Jonathan P.; Panitz, Frank; Bendixen, Christian; Nielsen, Rasmus; Willerslev, Eske. "The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing". Plos One 2 2 (2007): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000207444400002&KeyUID=WOS:000207444400002.
    10.1371/journal.pone.0000197
  427. Gilbert, M. Thomas P.; Tomsho, Lynn P.; Rendulic, Snjezana; Packard, Michael; Drautz, Daniela I.; Sher, Andrei; Tikhonov, Alexei; et al. "Whole-genome shotgun sequencing of mitochondria from ancient hair shafts". Science 317 5846 (2007): 1927-1930. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000249764300041&KeyUID=WOS:000249764300041.
    10.1126/science.1146971
  428. Gilbert, M.T.; Willerslev, E.. "Authenticity in ancient DNA studies.". Medicina nei secoli 18 3 (2006): 701-723. http://www.scopus.com/inward/record.url?eid=2-s2.0-38949163103&partnerID=MN8TOARS.
  429. Topf, AL; Gilbert, MTP; Dumbacher, JP; Hoelzel, AR. "Tracing the phylogeography of human populations in Britain based on 4th-11th century mtDNA genotypes". Molecular Biology and Evolution 23 1 (2006): 152-161. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000233843900018&KeyUID=WOS:000233843900018.
    10.1093/molbev/msj013
  430. Sampietro, Maria Lourdes; Gilbert, M. Thomas P.; Lao, Oscar; Caramelli, David; Lari, Martina; Bertranpetit, Jaume; Lalueza-Fox, Carles. "Tracking down human contamination in ancient human teeth". Molecular Biology and Evolution 23 9 (2006): 1801-1807. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000239905100019&KeyUID=WOS:000239905100019.
    10.1093/molbev/msl047
  431. Gilbert, M. T. P.; Willerslev, E.. "Ancient Plant DNA". Encyclopedia of Quaternary Sciences (2006):
    papers2://publication/uuid/5609DAA9-D42B-4B56-A260-A1C1142E0F91
  432. Binladen, J; Wiuf, C; Gilbert, MTP; Bunce, M; Barnett, R; Larson, G; Greenwood, AD; et al. "Assessing the fidelity of ancient DNA sequences amplified from nuclear genes". Genetics 172 2 (2006): 733-741. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000236178800005&KeyUID=WOS:000236178800005.
    10.1534/genetics.105.049718
  433. Gilbert, M. T. P.; Janaway, R. C.; Tobin, D. J.; Cooper, A.; Wilson, A. S.. "Histological correlates of post mortem mitochondrial DNA damage in degraded hair". Forensic Science International 156 2-3 (2006): 201-207. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000235196200018&KeyUID=WOS:000235196200018.
    10.1016/j.forsciint.2005.02.019
  434. Gilbert, MTP; Hansen, AJ; Willerslev, E; Turner-Walker, G; Collins, M. "Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA". International Journal of Osteoarchaeology 16 2 (2006): 156-164. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000237365200007&KeyUID=WOS:000237365200007.
    10.1002/oa.832
  435. Shapiro, Beth; Rambaut, Andrew; Gilbert, M. Thomas P.. "No proof that typhoid caused the Plague of Athens (a reply to Papagrigorakis et al.)". International Journal of Infectious Diseases 10 4 (2006): 334-335. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000239341400015&KeyUID=WOS:000239341400015.
    10.1016/j.ijid.2006.02.006
  436. Gilbert, MTP; Menez, L; Janaway, RC; Tobin, DJ; Cooper, A; Wilson, AS. "Resistance of degraded hair shafts to contaminant DNA". Forensic Science International 156 2-3 (2006): 208-212. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000235196200019&KeyUID=WOS:000235196200019.
    10.1016/j.forsciint.2005.02.021
  437. Gilbert, MTP; Shapiro, B; Drummond, A; Cooper, A. "Post-mortem DNA damage hotspots in Bison (Bison bison) provide evidence for both damage and mutational hotspots in human mitochondrial DNA". Journal of Archaeological Science 32 7 (2005): 1053-1060. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000229879900009&KeyUID=WOS:000229879900009.
    10.1016/j.jas.2005.02.006
  438. Gilbert, MTP; Bandelt, HJ; Hofreiter, M; Barnes, I. "Assessing ancient DNA studies". Trends in Ecology & Evolution 20 10 (2005): 541-544. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000232606900005&KeyUID=WOS:000232606900005.
    10.1016/j.tree.2005.07.005
  439. Lydolph, MC; Jacobsen, J; Arctander, P; Gilbert, MTP; Gilichinsky, DA; Hansen, AJ; Willerslev, E; Lange, L. "Beringian paleoecology inferred from permafrost-preserved fungal DNA". Applied and Environmental Microbiology 71 2 (2005): 1012-1017. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000227043400053&KeyUID=WOS:000227043400053.
    10.1128/AEM.71.2.1012-1017.2005
  440. Gilbert, MTP; Rudbeck, L; Willerslev, E; Hansen, AJ; Smith, C; Penkman, KEH; Prangenberg, K; et al. "Biochemical and physical correlates of DNA contamination in archaeological human bones and teeth excavated at Matera, Italy". Journal of Archaeological Science 32 5 (2005): 785-793. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000228307700012&KeyUID=WOS:000228307700012.
    10.1016/j.jas.2004.12.008
  441. Machado, Carlos A.; Robbins, Nancy; Gilbert, M. Thomas P.; Herre, Edward Allen. "Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualism". Proceedings of the National Academy of Sciences of the United States of America 102 Suppl (2005): 6558-6565. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000229023700008&KeyUID=WOS:000229023700008.
    10.1073/pnas.0501840102
  442. Gilbert, MTP; Barnes, I; Collins, MJ; Smith, C; Eklund, J; Goudsmit, J; Poinar, H; Cooper, A. "Long-term survival of ancient DNA in Egypt: Response to Zink and Nerlich (2003)". American Journal of Physical Anthropology 128 1 (2005): 110-114. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000231617400010&KeyUID=WOS:000231617400010.
    10.1002/ajpa.20045
  443. Rudbeck, L; Gilbert, MTP; Willerslev, E; Hansen, AJ; Lynnerup, N; Christensen, T; Dissing, J. "mtDNA analysis of human remains from an early Danish Christian cemetery". American Journal of Physical Anthropology 128 2 (2005): 424-429. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000232239800017&KeyUID=WOS:000232239800017.
    10.1002/ajpa.20294
  444. Metspalu, M; Kivisild, T; Metspalu, E; Parik, J; Hudjashov, G; Kaldma, K; Serk, P; et al. "Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans". Bmc Genetics 5 (2004): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000223865600001&KeyUID=WOS:000223865600001.
    10.1186/1471-2156-5-26
  445. Gilbert, MTP; Cuccui, J; White, W; Lynnerup, N; Titball, RW; Cooper, A; Prentice, MB. "Response to Drancourt and Raoult". Microbiology-Sgm 150 (2004): 264-265. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000188841500003&KeyUID=WOS:000188841500003.
    10.1099/mic.0.26959-0
  446. Shapiro, B; Drummond, AJ; Rambaut, A; Wilson, MC; Matheus, PE; Sher, AV; Pybus, OG; et al. "Rise and fall of the Beringian steppe bison". Science 306 5701 (2004): 1561-1565. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000225442700061&KeyUID=WOS:000225442700061.
    10.1126/science.1101074
  447. Lalueza-Fox, C; Sampietro, ML; Gilbert, MTP; Castri, L; Facchini, F; Pettener, D; Bertranpetit, J. "Unravelling migrations in the steppe: mitochondrial DNA sequences from ancient Central Asians". Proceedings of the Royal Society B-Biological Sciences 271 1542 (2004): 941-947. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000221199600008&KeyUID=WOS:000221199600008.
    10.1098/rspb.2004.2698
  448. Prentice, M; Gilbert, T; Cooper, A. "Was the Black Death caused by Yersinia pestis?". Lancet Infectious Diseases 4 2 (2004): 72-72. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000188766100015&KeyUID=WOS:000188766100015.
    10.1016/S1473-3099(04)00923-5
  449. M Thomas P Gilbert; J Cuccui; W White; Niels Lynnerup; RW Titball; A. Cooper; MB Prentice. "Abscence of Yersinia pestis-specific dna in human teeth from five European excavations of putative plague victims". Microbiology 150 2 (2004): 341-354. https://curis.ku.dk/portal/en/publications/abscence-of-yersinia-pestisspecific-dna-in-human-teeth-from-five-european-excavations-of-putative-plague-victims(ca346e00-74c3-11db-bee9-02004c4f4f50).html.
  450. Drancourt, M.; Raoult, D.; Gilbert, M.T.P.; Cuccui, J.; White, W.; Lynnerup, N.; Titball, R.W.; Cooper, A.; Prentice, M.B.. "Molecular detection of Yersinia pestis in dental pulp". Microbiology 150 2 (2004): 263-265. http://www.scopus.com/inward/record.url?eid=2-s2.0-1242296239&partnerID=MN8TOARS.
  451. Gilbert, MTP; Cuccui, J; White, W; Lynnerup, N; Titball, RW; Cooper, A; Prentice, MB. "Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims". Microbiology-Sgm 150 (2004): 341-354. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000188841500012&KeyUID=WOS:000188841500012.
    10.1099/mic.0.26594-0
  452. Gilbert, MTP; Wilson, AS; Bunce, M; Hansen, AJ; Willerslev, E; Shapiro, B; Higham, TFG; et al. "Ancient mitochondrial DNA from hair". Current Biology 14 12 (2004): R463-R464. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000222305500007&KeyUID=WOS:000222305500007.
    10.1016/j.cub.2004.06.008
  453. Gilbert, MTP; Hansen, AJ; Willerslev, E; Rudbeck, L; Barnes, I; Lynnerup, N; Cooper, A. "Characterization of genetic miscoding lesions caused by postmortem damage". American Journal of Human Genetics 72 1 (2003): 48-61. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000180186800005&KeyUID=WOS:000180186800005.
    10.1086/345379
  454. Gilbert, MTP; Willerslev, E; Hansen, AJ; Barnes, I; Rudbeck, L; Lynnerup, N; Cooper, A. "Distribution patterns of postmortem damage in human mitochondrial DNA". American Journal of Human Genetics 72 1 (2003): 32-47. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000180186800004&KeyUID=WOS:000180186800004.
    10.1086/345378
  455. Willerslev, E; Hansen, AJ; Binladen, J; Brand, TB; Gilbert, MTP; Shapiro, B; Bunce, M; et al. "Diverse plant and animal genetic records from Holocene and Pleistocene sediments". Science 300 5620 (2003): 791-795. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000182579800049&KeyUID=WOS:000182579800049.
    10.1126/science.1084114
  456. Jaenicke-Despres, V; Buckler, ES; Smith, BD; Gilbert, MTP; Cooper, A; Doebley, J; Paabo, S. "Early allelic selection in maize as revealed by ancient DNA". Science 302 5648 (2003): 1206-1208. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000186544300053&KeyUID=WOS:000186544300053.
    10.1126/science.1089056
  457. Lalueza-Fox, C; Gilbert, MTP; Martinez-Fuentes, AJ; Calafell, F; Bertranpetit, J. "Mitochondrial DNA from pre-Columbian Ciboneys from Cuba and the prehistoric colonization of the Caribbean". American Journal of Physical Anthropology 121 2 (2003): 97-108. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000183084700001&KeyUID=WOS:000183084700001.
    10.1002/ajpa.10236
  458. Endicott, P; Gilbert, MTP; Stringer, C; Lalueza-Fox, C; Willerslev, E; Hansen, AJ; Cooper, A. "The genetic origins of the Andaman Islanders". American Journal of Human Genetics 72 1 (2003): 178-184. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000180186800018&KeyUID=WOS:000180186800018.
    10.1086/345487
Capítulo de livro
  1. Paula F. Campos; M Thomas P Gilbert. "DNA extraction from keratin and chitin". 57-63. Humana Press, 2019.
    10.1007/978-1-4939-9176-1_7
  2. Andrew David Foote; M Thomas P Gilbert; Jennifer A. Jackson. "Ecological and evolutionary divergence in whales and dolphins". editado por Murray, {Craig A., 89-112. Nova Science Publishers, 2010.
  3. Thomas, M.; Gilbert, P.. "Postmortem Damage of Mitochondrial DNA". In Human Mitochondrial DNA and the Evolution of Homo sapiens, 91-115. Springer Berlin Heidelberg, 2006.
    10.1007/3-540-31789-9_5
Livro
  1. Charlier, Philippe; Huynh-Charlier, Isabelle; Poupon, Joël; Keyser, Christine; Lancelot, Eloïse; Favier, Dominique; Vignal, Jean-Noël; et al. Multidisciplinary medical identification of a French king's head (Henri IV). 2010.
    papers2://publication/uuid/1F2B862B-0E48-45EF-AEC1-53A385F55105
  2. Gilbert, M.T.P.. Paleogenomics Using the 454 Sequencing Platform. 2008.
    10.1002/9783527625130.ch14
Pré-impressão
  1. Sofia Marcos; Iñaki Odriozola; Raphael Eisenhofer; Ostaizka Aizpurua; Joan Tarradas; Garazi Martin; Andone Estonba; et al. "Reduced metabolic capacity of the gut microbiota associates with host growth in broiler chickens". 2023. https://doi.org/10.21203/rs.3.rs-2885808/v1.
    10.21203/rs.3.rs-2885808/v1
  2. Emily L. Cavill; Germán Hernández-Alonso; Rob Ogden; M. Thomas. P. Gilbert. "Never judge a bird by its feathers: genetics unveils the true target of trafficking in morphologically similarCopsychusspecies". 2023. https://doi.org/10.1101/2023.04.14.536889.
    10.1101/2023.04.14.536889
  3. Georgette Femerling; Cock van Oosterhout; Shaohong Feng; Rachel M. Bristol; Guojie Zhang; Jim Groombridge; M. Thomas P. Gilbert; Hernán E. Morales. "Genetic load and adaptive potential of a recovered avian species that narrowly avoided extinction". 2022. https://doi.org/10.1101/2022.12.20.521169.
    10.1101/2022.12.20.521169
  4. Mikkel Skovrind; George Pacheco; Emil Aputsiaq Flindt Christensen; Shyam Gopalakrishnan; Katharina Fietz; Tore Hejl Holm-Hansen; Filipe Garrett Vieira; et al. "Genomic differentiation among European perch in the western Baltic Sea reflects colonisation history and local adaptation". 2022. https://doi.org/10.1101/2022.11.23.516742.
    10.1101/2022.11.23.516742
  5. Jacob Rasmussen; Pia Kiilerich; Rune Waagbø; Erik-Jan Lock; Madsen Lise; M Thomas P Gilbert; Karsten Kristiansen; Morten Limborg. "Hologenomic insights demonstrate co-evolution between an intestinal Mycoplasma and its salmonid host". 2022. https://doi.org/10.21203/rs.3.rs-1814912/v1.
    10.21203/rs.3.rs-1814912/v1
Resumo em conferência
  1. Ashild J. Vagene; Anna Fotakis; Sean D. Denham; Miren Orbegozo; Meaghan Mackie; Jesper Olsen; Enrico Cappellini; Axel Christophersen; M Thomas P Gilbert. "Genomic and proteomic evidence for Mycobacterium leprae in human medieval dental calculus from Trondheim, Norway". 2020.
    10.1002/ajpa.24023
  2. Shahab Sarmashghi; Kristine Bohmann; M Thomas P Gilbert; Vineet Bafna; Siavash Mirarab. "Assembly-free and alignment-free sample identification using genome skims". 2018.
    10.1007/978-3-319-89929-9
  3. Christina Warinner; Jessica Hendy; Camilla Speller; Enrico Cappellini; Roman Fischer; Christian Trachsel; Jette Arneborg; et al. "Direct evidence of milk consumption from ancient human dental calculus". 2015.
    10.1002/ajpa.22718

Outros

Outra produção
  1. The potential of aquatic haematophagous, liquidosomatophagous and macrophagous leeches as a tool for iDNA characterisation. 2021. Christina Lynggaard; Alejandro Oceguera-Figueroa; Sebastian Kvist; M Thomas P Gilbert; Kristine Bohmann. https://doi.org/10.1101/2021.05.01.442262.
    10.1101/2021.05.01.442262
  2. The pangenome of the fungal pathogen Neonectria neomacrospora. 2021. Knud Nor Nielsen; Kimmo Sirén; Bent Petersen; Thomas Sicheritz-Pontén; M. Thomas P. Gilbert; Thorfinn Sand Korneliussen; Ole Kim Hansen. https://doi.org/10.1101/2021.03.11.434922.
    10.1101/2021.03.11.434922
  3. Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts. 2021. Jacob Agerbo Rasmussen; Kasper Rømer Villumsen; David A. Duchêne; Lara Christine Puetz; Tom O. Delmont; Harald Sveier; Kim Præbel; et al. https://doi.org/10.21203/rs.3.rs-269923/v1.
    10.21203/rs.3.rs-269923/v1
  4. Genome-Resolved Metagenomics Suggests A Mutualistic Relationship Between Mycoplasma and Salmonid Hosts. 2020. Jacob Rasmussen; Kasper Villumsen; David Duchêne; Lara Puetz; Tom Delmont; Harald Sveier; Kim Præbel; et al. https://doi.org/10.21203/rs.3.rs-97276/v1.
    10.21203/rs.3.rs-97276/v1
  5. Rapid discovery of novel prophages using biological feature engineering and machine learning. 2020. Kimmo Sirén; Andrew Millard; Bent Petersen; M Thomas P Gilbert; Martha RJ Clokie; Thomas Sicheritz-Pontén. https://doi.org/10.1101/2020.08.09.243022.
    10.1101/2020.08.09.243022
  6. Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival. 2019. Oliver Smith; Glenn Dunshea; Mikkel-Holger S. Sinding; Sergey Fedorov; Mietje Germonpre; Hervé Bocherens; M.T.P. Gilbert. https://doi.org/10.1101/546820.
    10.1101/546820
  7. hilldiv: an R package for the integral analysis of diversity based on Hill numbers. 2019. Antton Alberdi; M Thomas P Gilbert. https://doi.org/10.1101/545665.
    10.1101/545665
  8. DNA metabarcoding - need for robust experimental designs to draw sound ecological conclusions. 2019. Lucie Zinger; Aurélie Bonin; Inger G. Alsos; Miklós Bálint; Holly Bik; Frédéric Boyer; Anthony A. Chariton; et al. https://curis.ku.dk/portal/en/publications/dna-metabarcoding--need-for-robust-experimental-designs-to-draw-sound-ecological-conclusions(c0e2632e-28e0-41c0-ba70-ecc3be44b351).html.
    10.1111/mec.15060
  9. Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin. 2018. https://doi.org/10.1101/282038.
    10.1101/282038
  10. Early Pleistocene enamel proteome sequences from Dmanisi resolve Stephanorhinus phylogeny. 2018. https://doi.org/10.1101/407692.
    10.1101/407692
  11. A flock of Genomes. 2014. Guojie Zhang; Erich D. Jarvis; M Thomas P Gilbert. https://curis.ku.dk/portal/en/publications/a-flock-of-genomes(126e8560-e6b1-4647-8bb2-e74d56efb2eb).html.
    10.1126/science.346.6215.1308
Atividades

Organização de evento

Nome do evento
Tipo de evento (Tipo de participação)
Instituição / Organização
2024 - Atual 2nd Applied Hologenomics Conference (2024)
2024 - Atual Symposium on Ancient RNA (2024)
2023 - Atual CEH-PSU Symposium on Hologenomics (2023)
2022 - Atual 1st Applied Hologenomics Conference (2022)
2022 - Atual Symposium on Ancient Plant DNA (2022)
2010 - Atual International Symposia of Biomolecular Archaeology IV (2010)
2007 - Atual International Symposium on Ancient DNA (2007)
2002 - Atual Ancient DNA – Damage, Retrieval and Repair (2002)
Distinções

Prémio

2014 Young Scientist Award
Lundbeckfonden, Dinamarca
2003 Wellcome Trust Prize PhD Studentship in Bioarchaeology
Wellcome Foundation Ltd, Reino Unido
2000 Academic Scholar
University of Oxford Oriel College, Reino Unido

Título

2017 Videnskabernes Selskab’s Silver Medal
Kongelige Danske Videnskabernes Selskab, Dinamarca