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Armengaud Jean. Published 212 articles in journals, including numerous reviews. Works in the area(s) of Biological Sciences with emphasis on omics and multi-omics approaches. In his curriculum Ciência Vitae the most frequent terms in the context of scientific, technological and artistic-cultural output are: proteomics; proteogenomics; metaproteomics; non-model organisms. Expert in proteogenomics, the alliance of genomics and proteomics for the characterization of non-model organisms, as well as in mass spectrometry for the identification and characterization of pathogens, and the definition of biomarkers for medical and environmental purposes. He manages a mass spectrometry research unit located near Avignon in France. His research team develops new methodologies for the study of microbiota and their clinical and environmental applications.
Identificação

Identificação pessoal

Nome completo
Armengaud Jean

Nomes de citação

  • Jean, Armengaud

Identificadores de autor

Ciência ID
A913-BA47-5664
ORCID iD
0000-0003-1589-445X

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Biologia Molecular

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Francês (Idioma materno)
Inglês Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2)
Espanhol; Castelhano Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2)
Formação
Grau Classificação
1991/10/01 - 1994/10/08
Concluído
Biology (Doctorat)
Université Grenoble Alpes, França
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento
Empregador
2000/12/20 - Atual Investigador principal (carreira) (Investigação) Commissariat a l'energie atomique et aux energies alternatives Centre de Saclay, França
Commissariat a l'energie atomique et aux energies alternatives Centre de Saclay, França
Projetos

Bolsa

Designação Financiadores
2021/01/01 - 2023/12/31 Dynamics of microbiome from an aquatic sentinel species upon toxicants – Dyn-Microbiome
Investigador responsável
Commissariat à l¿énergie atomique et aux énergies alternatives, França
Agence nationale de la recherche
Em curso
2018/01/01 - 2021/12/31 Phylopeptidomics
Investigador responsável
Commissariat à l¿énergie atomique et aux énergies alternatives, França
Agence nationale de la recherche
Concluído
Produções

Publicações

Artigo em revista
  1. Madisson Chabas; Jean Armengaud; Béatrice Alpha-Bazin. "A Simplified Label-Free Method for Proteotyping Sets of Six Isolates in a Single Liquid Chromatography-High-Resolution Tandem Mass Spectrometry Analysis". Journal of Proteome Research (2024): https://doi.org/10.1021/acs.jproteome.3c00535.
    10.1021/acs.jproteome.3c00535
  2. Katharina Runzheimer; Clément Lozano; Diana Boy; Jens Boy; Roberto Godoy; Francisco J. Matus; Denise Engel; et al. "Exploring Andean High-Altitude Lake Extremophiles through Advanced Proteotyping". Journal of Proteome Research (2024): https://doi.org/10.1021/acs.jproteome.3c00538.
    10.1021/acs.jproteome.3c00538
  3. Lise Molinelli; Elodie Drula; Jean-Charles Gaillard; David Navarro; Jean Armengaud; Jean-Guy Berrin; Thierry Tron; Lionel Tarrago; Yvonne Nygård. "Methionine oxidation of carbohydrate-active enzymes during white-rot wood decay". Applied and Environmental Microbiology (2024): https://doi.org/10.1128/aem.01931-23.
    10.1128/aem.01931-23
  4. Madisson Chabas; Jean-Charles Gaillard; Béatrice Alpha-Bazin; Jean Armengaud. "Flash MS/MS proteotyping allows identifying microbial isolates in 36 s of mass spectrometry signal". PROTEOMICS (2024): https://doi.org/10.1002/pmic.202300372.
    10.1002/pmic.202300372
  5. Imed Dorbani; Jean Armengaud; Frédéric Carlin; Catherine Duport. "Proteome of spores from biological indicators in sterilization processes: Bacillus pumilus and Bacillus atrophaeus". PROTEOMICS (2023): https://doi.org/10.1002/pmic.202300293.
    10.1002/pmic.202300293
  6. Léo Schlosser-Perrin; Philippe Holzmuller; Bernard Fernandez; Guylaine Miotello; Noureddine Dahmani; Aymeric Neyret; Stéphane Bertagnoli; et al. "Constitutive proteins of lumpy skin disease virion assessed by next-generation proteomics". Journal of Virology (2023): https://doi.org/10.1128/jvi.00723-23.
    10.1128/jvi.00723-23
  7. Fabrice Bertile; Sabine Matallana-Surget; Andreas Tholey; Susana Cristobal; Jean Armengaud. "Diversifying the concept of model organisms in the age of -omics". Communications Biology (2023): https://doi.org/10.1038/s42003-023-05458-x.
    10.1038/s42003-023-05458-x
  8. Maxime Leprêtre; Arnaud Chaumot; Rayan Aboud; Nicolas Delorme; Anabelle Espeyte; Arnaud Salvador; Sophie Ayciriex; et al. "Dynamic Multiple Reaction Monitoring of amphipod Gammarus fossarum caeca expands molecular information for understanding the impact of contaminants". Science of The Total Environment 893 (2023): 164875-164875. http://dx.doi.org/10.1016/j.scitotenv.2023.164875.
    10.1016/j.scitotenv.2023.164875
  9. Madisson Chabas; Olivier Pible; Jean Armengaud; Béatrice Alpha-Bazin. "Label-Free Multiplex Proteotyping of Microbial Isolates". Analytical Chemistry (2023): https://doi.org/10.1021/acs.analchem.3c01975.
    10.1021/acs.analchem.3c01975
  10. Anne-Soisig Steunou; Marion Babot; Anne Durand; Marie-Line Bourbon; Sylviane Liotenberg; Guylaine Miotello; Jean Armengaud; Soufian Ouchane; Jannell V. Bazurto. "Discriminating Susceptibility of Xanthine Oxidoreductase Family to Metals". Microbiology Spectrum (2023): https://doi.org/10.1128/spectrum.04814-22.
    10.1128/spectrum.04814-22
  11. Pauline Petit; Karim Hayoun; Béatrice Alpha-Bazin; Jean Armengaud; Corinne Rivasseau. "First Isolation and Characterization of Bacteria from the Core’s Cooling Pool of an Operating Nuclear Reactor". Microorganisms (2023): https://doi.org/10.3390/microorganisms11081871.
    10.3390/microorganisms11081871
  12. Benjamin A. R. N. Durand; Catherine Dunyach-Remy; Oumayma El Kaddouri; Riham Daher; Jean-Philippe Lavigne; Jean Armengaud; Lucia Grenga. "Proteomic insights into Helcococcus kunzii in a diabetic foot ulcer-like environment". PROTEOMICS – Clinical Applications (2023): https://doi.org/10.1002/prca.202200069.
    10.1002/prca.202200069
  13. Clément Baratange; Hugo Baali; Véronique Gaillet; Isabelle Bonnard; Laurence Delahaut; Jean-Charles Gaillard; Dominique Grandjean; et al. "Bioaccumulation and molecular effects of carbamazepine and methylmercury co-exposure in males of Dreissena polymorpha". Science of The Total Environment (2023): 165379-165379. http://dx.doi.org/10.1016/j.scitotenv.2023.165379.
    10.1016/j.scitotenv.2023.165379
  14. Anais Defois; Nina Bon; Alexandre Charpentier; Melina Georget; Nicolas Gaigeard; Frederic Blanchard; Antoine Hamel; et al. "Osteoarthritic chondrocytes undergo a glycolysis-related metabolic switch upon exposure to IL-1b or TNF". Cell Communication and Signaling 21 1 (2023): http://dx.doi.org/10.1186/s12964-023-01150-z.
    10.1186/s12964-023-01150-z
  15. Mélanie Gonzales; Laure Plener; Jean Armengaud; Nicholas Armstrong; Éric Chabrière; David Daudé. "Lactonase-mediated inhibition of quorum sensing largely alters phenotypes, proteome, and antimicrobial activities in Burkholderia thailandensis E264". Frontiers in Cellular and Infection Microbiology 13 (2023): http://dx.doi.org/10.3389/fcimb.2023.1190859.
    10.3389/fcimb.2023.1190859
  16. Petar Pujic; Lorena Carro; Pascale Fournier; Jean ARMENGAUD; Guylaine Miotello; Nathalie Dumont; Caroline Bourgeois; et al. "Frankia alni Carbonic Anhydrase Regulates Cytoplasmic pH of Nitrogen-Fixing Vesicles". International Journal of Molecular Sciences 24 11 (2023): 9162-9162. http://dx.doi.org/10.3390/ijms24119162.
    10.3390/ijms24119162
  17. Charlotte Mappa; BEATRICE ALPHA-BAZIN; Olivier Pible; Jean ARMENGAUD. "Mix24X, a Lab-Assembled Reference to Evaluate Interpretation Procedures for Tandem Mass Spectrometry Proteotyping of Complex Samples". International Journal of Molecular Sciences 24 10 (2023): 8634-8634. http://dx.doi.org/10.3390/ijms24108634.
    10.3390/ijms24108634
  18. Abdelali Daddaoua; Consolación Álvarez; Monika Oggerin; Nuria Rodriguez; Estrella Duque; Ricardo Amils; Jean Armengaud; Ana Segura; Juan Luis Ramos. "Rio Tinto as a niche for acidophilus enzymes of industrial relevance". Microbial Biotechnology (2023): https://doi.org/10.1111/1751-7915.14192.
    10.1111/1751-7915.14192
  19. Charlotte Mappa; BEATRICE ALPHA-BAZIN; Olivier Pible; Jean ARMENGAUD. "Evaluation of the Limit of Detection of Bacteria by Tandem Mass Spectrometry Proteotyping and Phylopeptidomics". Microorganisms 11 5 (2023): 1170-1170. http://dx.doi.org/10.3390/microorganisms11051170.
    10.3390/microorganisms11051170
  20. Olivier Pible; Pauline Petit; Gérard Steinmetz; Corinne Rivasseau; Jean Armengaud. "Taxonomical composition and functional analysis of biofilms sampled from a nuclear storage pool". Frontiers in Microbiology 14 (2023): http://dx.doi.org/10.3389/fmicb.2023.1148976.
    10.3389/fmicb.2023.1148976
  21. Alicia Vallet; Jacqueline Martin-Laffon; Adrien Favier; Benoît Revel; Titouan Bonnot; Claude Vidaud; Jean Armengaud; et al. "The plasma membrane-associated cation-binding protein PCaP1 of Arabidopsis thaliana is a uranyl-binding protein". Journal of Hazardous Materials (2023): https://doi.org/10.1016/j.jhazmat.2022.130668.
    10.1016/j.jhazmat.2022.130668
  22. Virginie Bourdin; Philippe Charlier; Stéphane Crevat; Lotfi Slimani; Catherine Chaussain; Mélodie Kielbasa; Olivier Pible; Jean Armengaud. "Deep Paleoproteotyping and Microtomography Revealed No Heart Defect nor Traces of Embalming in the Cardiac Relics of Blessed Pauline Jaricot". International Journal of Molecular Sciences (2023): https://doi.org/10.3390/ijms24033011.
    10.3390/ijms24033011
  23. Clément Lozano; Lucia Grenga; Fabrice Gallais; Guylaine Miotello; Laurent Bellanger; Jean Armengaud. "Mass spectrometry detection of monkeypox virus: Comprehensive coverage for ranking the most responsive peptide markers". PROTEOMICS (2023): https://doi.org/10.1002/pmic.202200253.
    10.1002/pmic.202200253
  24. Jean Armengaud. "Metaproteomics to understand how microbiota function: The crystal ball predicts a promising future". Environmental Microbiology (2023): https://doi.org/10.1111/1462-2920.16238.
    10.1111/1462-2920.16238
  25. Mabondzo, Aloise; Harati, Rania; Broca-Brisson, Lea; Guyot, Anne-Cecile; Costa, Narciso; Cacciante, Francesco; Putignano, Elena; et al. "Dodecyl creatine ester improves cognitive function and identifies key protein drivers including KIF1A and PLCB1 in a mouse model of creatine transporter deficiency". Frontiers in Molecular Neuroscience (2023): https://publons.com/wos-op/publon/56053641/.
    10.3389/FNMOL.2023.1118707
  26. Laurent, Jennifer; Le Berre, Iwan; Armengaud, Jean; Kailasam, Senthilkumar; Couteau, Jerome; Waeles, Matthieu; Le Floch, Stephane; Laroche, Jean; Pichereau, Vianney. "Integration of environmental signatures and omics-based approaches on the European flounder to assist with health assessment of estuarine ecosystems in Brittany, France". Science of the Total Environment (2023): https://publons.com/wos-op/publon/56932179/.
    10.1016/J.SCITOTENV.2023.163195
  27. Hama, Hamadou Oumarou; Chenal, Thomas; Pible, Olivier; Miotello, Guylaine; Armengaud, Jean; Drancourt, Michel. "An ancient coronavirus from individuals in France, circa 16th century". International Journal of Infectious Diseases (2023): https://publons.com/wos-op/publon/56932185/.
    10.1016/J.IJID.2023.03.019
  28. Martinez-Espinosa, Rosa Maria; Armengaud, Jean; Matallana-Surget, Sabine; Olaya-Abril, Alfonso. "Editorial: Environmental omics and their biotechnological applications". Frontiers in Microbiology (2023): https://publons.com/wos-op/publon/56932182/.
    10.3389/FMICB.2023.1165558
  29. Petar Pujic; Nicole Alloisio; Guylaine Miotello; Jean Armengaud; Danis Abrouk; Pascale Fournier; Philippe Normand. "Correction: Pujic et al. The Proteogenome of Symbiotic Frankia alni in Alnus glutinosa Nodules. Microorganisms 2022, 10, 651". Microorganisms (2022): https://doi.org/10.3390/microorganisms10112229.
    10.3390/microorganisms10112229
  30. Jean Armengaud. "Unique Insights into How Plants and Soil Microbiomes Interact Are at Our Fingertips". mSystems (2022): https://doi.org/10.1128/msystems.00589-22.
    10.1128/msystems.00589-22
  31. Yeseul Park; Zohar Eyal; Péter Pekker; Daniel M. Chevrier; Christopher T. Lefèvre; Pascal Arnoux; Jean Armengaud; et al. "Periplasmic Bacterial Biomineralization of Copper Sulfide Nanoparticles". Advanced Science (2022): https://doi.org/10.1002/advs.202203444.
    10.1002/advs.202203444
  32. Subina Mehta; Valdemir M. Carvalho; Andrew Rajczewski; Olivier Pible; Björn A. Grüning; James E. Johnson; Reid Wagner; et al. "Catching the Wave: Detecting Strain-Specific SARS-CoV-2 Peptides in Clinical Samples Collected during Infection Waves from Diverse Geographical Locations". Viruses (2022): https://www.mdpi.com/1999-4915/14/10/2205.
    10.3390/v14102205
  33. Amal Ben Ayed; Imen Akrout; Quentin Albert; Stéphane Greff; Charlotte Simmler; Jean Armengaud; Mélodie Kielbasa; et al. "Biotransformation of the Fluoroquinolone, Levofloxacin, by the White-Rot Fungus Coriolopsis gallica". Journal of Fungi (2022): https://doi.org/10.3390/jof8090965.
    10.3390/jof8090965
  34. Clément Lozano; Mélodie Kielbasa; Jean-Charles Gaillard; Guylaine Miotello; Olivier Pible; Jean Armengaud. "Identification and Characterization of Marine Microorganisms by Tandem Mass Spectrometry Proteotyping". Microorganisms (2022): https://doi.org/10.3390/microorganisms10040719.
    10.3390/microorganisms10040719
  35. Petar Pujic; Nicole Alloisio; Guylaine Miotello; Jean Armengaud; Danis Abrouk; Pascale Fournier; Philippe Normand. "The Proteogenome of Symbiotic Frankia alni in Alnus glutinosa Nodules". Microorganisms (2022): https://doi.org/10.3390/microorganisms10030651.
    10.3390/microorganisms10030651
  36. Othmann MERABET; Natalia Pietrosemoli; Emeline Perthame; Jean ARMENGAUD; Jean-Charles Gaillard; Virginie Borges-Cardoso; Maïlys Daniau; et al. "Infection of Human Endothelial Cells with Lassa Virus Induces Early but Transient Activation and Low Type I IFN Response Compared to the Closely-Related Nonpathogenic Mopeia Virus". Viruses (2022): https://www.mdpi.com/1999-4915/14/3/652.
    10.3390/v14030652
  37. Christophe Hirtz; Atef Mahmoud Mannaa; Estelle Moulis; Olivier Pible; Robin O’Flynn; Jean Armengaud; Virginie Jouffret; et al. "Deciphering Black Extrinsic Tooth Stain Composition in Children Using Metaproteomics". ACS Omega (2022): https://doi.org/10.1021/acsomega.1c04770.
    10.1021/acsomega.1c04770
  38. Alice Chateau; Béatrice Alpha-Bazin; Jean Armengaud; Catherine Duport. "Heme A Synthase Deficiency Affects the Ability of Bacillus cereus to Adapt to a Nutrient-Limited Environment". International Journal of Molecular Sciences (2022): https://doi.org/10.3390/ijms23031033.
    10.3390/ijms23031033
  39. Isabel Marques; Duarte Gouveia; Jean-Charles Gaillard; Sónia Martins; Magda C. Semedo; Fernando C. Lidon; Fábio M. DaMatta; et al. "Next-Generation Proteomics Reveals a Greater Antioxidative Response to Drought in Coffea arabica Than in Coffea canephora". Agronomy (2022): https://doi.org/10.3390/agronomy12010148.
    10.3390/agronomy12010148
  40. Hamadou OUMAROU HAMA; Thomas Chenal; Olivier Pible; Guylaine Miotello; Jean Armengaud; Rémi Barbieri; Michel Drancourt. "An Ancient Coronavirus from Individuals in France, Circa 16th Century". SSRN Electronic Journal (2022): http://dx.doi.org/10.2139/ssrn.4272743.
    10.2139/ssrn.4272743
  41. Grosjean, Nicolas; Le Jean, Marie; Chalot, Michel; Mora-Montes, Hector M.; Armengaud, Jean; Gross, Elisabeth M.; Blaudez, Damien. "Genome-Wide Mutant Screening in Yeast Reveals that the Cell Wall is a First Shield to Discriminate Light From Heavy Lanthanides". Frontiers in Microbiology (2022): https://publons.com/wos-op/publon/56932078/.
    10.3389/FMICB.2022.881535
  42. Grosjean, Nicolas; Le Jean, Marie; Armengaud, Jean; Schikora, Adam; Chalot, Michel; Gross, Elisabeth M.; Blaudez, Damien. "Combined omics approaches reveal distinct responses between light and heavy rare earth elements in Saccharomyces cerevisiae". Journal of Hazardous Materials (2022): https://publons.com/wos-op/publon/50948016/.
    10.1016/J.JHAZMAT.2021.127830
  43. Dumas, Thibaut; Courant, Frederique; Almunia, Christine; Boccard, Julien; Rosain, David; Duporte, Geoffroy; Armengaud, Jean; Fenet, Helene; Gomez, Elena. "An integrated metabolomics and proteogenomics approach reveals molecular alterations following carbamazepine exposure in the male mussel Mytilus galloprovincialis". Chemosphere (2022): https://publons.com/wos-op/publon/50406414/.
    10.1016/J.CHEMOSPHERE.2021.131793
  44. Yu, Chungui; Armengaud, Jean; Blaustein, Ryan Andrew; Chen, Kezhen; Ye, Zhe; Xu, Fengjun; Gaillard, Jean-Charles; et al. "Antibiotic tolerance and degradation capacity of the organic pollutant-degrading bacterium Rhodococcus biphenylivorans TG9T". Journal of Hazardous Materials (2022): https://publons.com/wos-op/publon/56932079/.
    10.1016/J.JHAZMAT.2021.127712
  45. Gallois, Nicolas; Alpha-Bazin, Beatrice; Bremond, Nicolas; Ortet, Philippe; Barakat, Mohamed; Piette, Laurie; Ali, Abbas Mohamad; et al. "Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria". The ISME Journal (2022): https://publons.com/wos-op/publon/49513868/.
    10.1038/S41396-021-01113-7
  46. Marques, Isabel; Rodrigues, Ana P.; Gouveia, Duarte; Lidon, Fernando C.; Martins, Sonia; Semedo, Magda C.; Gaillard, Jean-Charles; et al. "High-resolution shotgun proteomics reveals that increased air [CO2] amplifies the acclimation response of Coffea species to drought regarding antioxidative, energy, sugar, and lipid dynamics". Journal of Plant Physiology (2022): https://publons.com/wos-op/publon/53442744/.
    10.1016/J.JPLPH.2022.153788
  47. Gueddou, Abdellatif; Sarker, Indrani; Sen, Arnab; Ghodhbane-Gtari, Faten; Benson, David R.; Armengaud, Jean; Gtari, Maher. "Effect of actinorhizal root exudates on the proteomes of Frankia soli NRRL B-16219, a strain colonizing the root tissues of its actinorhizal host via intercellular pathway". Research in Microbiology (2022): https://publons.com/wos-op/publon/56317165/.
    10.1016/J.RESMIC.2021.103900
  48. Fernandez, Bernard; Armengaud, Jean; Subra, Gilles; Enjalbal, Christine. "MALDI-MS/MS of N-Terminal TMPP-Acyl Peptides: A Worthwhile Tool to Decipher Protein N-Termini". European Journal of Organic Chemistry (2022): https://publons.com/wos-op/publon/51119127/.
    10.1002/EJOC.202101549
  49. Armengaud, Jean. "Protecting our environment, a motivating outdoor game for proteomics!". Proteomics (2022): https://publons.com/wos-op/publon/56932072/.
    10.1002/PMIC.202200055
  50. Hassan, Hamdy A.; d'Enza, Marina; Armengaud, Jean; Pieper, Dietmar H.. "Biochemical and genetic characterization comparison of four extradiol dioxygenases in Rhizorhabdus wittichii RW1". Applied Microbiology and Biotechnology (2022): https://publons.com/wos-op/publon/53435515/.
    10.1007/S00253-022-12099-3
  51. Gallois, Nicolas; Alpha-Bazin, Beatrice; Bremond, Nicolas; Ortet, Philippe; Barakat, Mohamed; Piette, Laurie; Mohamad Ali, Abbas; et al. "Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria (Sept, 10.1038/s41396-021-01113-7, 2021)". The ISME Journal (2022): https://publons.com/wos-op/publon/51083747/.
    10.1038/S41396-021-01164-W
  52. Goncalves, Luis Gafeira; Santos, Susana; Gomes, Laidson Paes; Armengaud, Jean; Miragaia, Maria; Coelho, Ana Varela. "Skin-to-blood pH shift triggers metabolome and proteome global remodelling in Staphylococcus epidermidis". Frontiers in Microbiology (2022): https://publons.com/wos-op/publon/56932077/.
    10.3389/FMICB.2022.1000737
  53. Hardouin, Pauline; Pible, Olivier; Marchandin, Helene; Culotta, Karen; Armengaud, Jean; Chiron, Raphael; Grenga, Lucia. "Quick and wide-range taxonomical repertoire establishment of the cystic fibrosis lung microbiota by tandem mass spectrometry on sputum samples". Frontiers in Microbiology (2022): https://publons.com/wos-op/publon/56932070/.
    10.3389/FMICB.2022.975883
  54. Boutonnet, Cecile; Lyonnais, Sebastien; Alpha-Bazin, Beatrice; Armengaud, Jean; Chateau, Alice; Duport, Catherine. "Dynamic Profile of S-Layer Proteins Controls Surface Properties of Emetic Bacillus cereus AH187 Strain". Frontiers in Microbiology (2022): https://publons.com/wos-op/publon/56932071/.
    10.3389/FMICB.2022.937862
  55. Alicia Vallet; Jacqueline Martin-Laffon; Adrien Favier; Benoît Revel; Titouan Bonnot; Claude Vidaud; Jean Armengaud; et al. "The Plasma Membrane-Associated Cation-Binding Protein Pcap1 of Arabidopsis Thaliana is a Uranyl-Binding Protein". SSRN Electronic Journal (2022): http://dx.doi.org/10.2139/ssrn.4253568.
    10.2139/ssrn.4253568
  56. Grenga, Lucia; Pible, Olivier; Miotello, Guylaine; Culotta, Karen; Ruat, Sylvie; Roncato, Marie-Anne; Gas, Fabienne; et al. "Taxonomical and functional changes in COVID-19 faecal microbiome could be related to SARS-CoV-2 faecal load". Environmental Microbiology (2022): https://publons.com/wos-op/publon/56932086/.
    10.1111/1462-2920.16028
  57. Virginie Jouffret; Guylaine Miotello; Karen Culotta; Sophie Ayrault; Olivier Pible; Jean Armengaud. "Increasing the power of interpretation for soil metaproteomics data". Microbiome (2021): https://doi.org/10.1186/s40168-021-01139-1.
    10.1186/s40168-021-01139-1
  58. Tim Van Den Bossche; Benoit J. Kunath; Kay Schallert; Stephanie S. Schäpe; Paul E. Abraham; Jean Armengaud; Magnus Ø. Arntzen; et al. "Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows". Nature Communications (2021): https://doi.org/10.1038/s41467-021-27542-8.
    10.1038/s41467-021-27542-8
  59. Claudia Cosio; Davide Degli-Esposti; Christine Almunia; Véronique Gaillet; Hervé Sartelet; Jean Armengaud; Arnaud Chaumot; Olivier Geffard; Alain Geffard. "Subcellular Distribution of Dietary Methyl-Mercury in Gammarus fossarum and Its Impact on the Amphipod Proteome". Environmental Science & Technology (2021): https://doi.org/10.1021/acs.est.1c02385.
    10.1021/acs.est.1c02385
  60. Mihaela Tudor; Antoine Gilbert; Charlotte Lepleux; Mihaela Temelie; Sonia Hem; Jean Armengaud; Emilie Brotin; et al. "A Proteomic Study Suggests Stress Granules as New Potential Actors in Radiation-Induced Bystander Effects". International Journal of Molecular Sciences 22 15 (2021): 7957-7957. https://doi.org/10.3390/ijms22157957.
    10.3390/ijms22157957
  61. Fella Hamitouche; Jean Armengaud; Luc Dedieu; Catherine Duport. "Cysteine Proteome Reveals Response to Endogenous Oxidative Stress in Bacillus cereus". International Journal of Molecular Sciences 22 14 (2021): 7550-7550. https://doi.org/10.3390/ijms22147550.
    10.3390/ijms22147550
  62. Pauline Hardouin; Raphael Chiron; Hélène Marchandin; Jean Armengaud; Lucia Grenga. "Metaproteomics to Decipher CF Host-Microbiota Interactions: Overview, Challenges and Future Perspectives". Genes 12 6 (2021): 892-892. https://doi.org/10.3390/genes12060892.
    10.3390/genes12060892
  63. Catherine Duport; Jean-Paul Madeira; Mahsa Farjad; Béatrice Alpha-Bazin; Jean Armengaud. "Methionine Sulfoxide Reductases Contribute to Anaerobic Fermentative Metabolism in Bacillus cereus". Antioxidants (2021): https://doi.org/10.3390/antiox10050819.
    10.3390/antiox10050819
  64. Alpha-Bazin, Béatrice; Gorlas, Aurore; Lagorce, Arnaud; Joulié, Damien; Boyer, Jean-Baptiste; Dutertre, Murielle; Gaillard, Jean-Charles; et al. "Lysine-specific acetylated proteome from the archaeon Thermococcus gammatolerans reveals the presence of acetylated histones". Journal of Proteomics 232 (2021): 104044. http://dx.doi.org/10.1016/j.jprot.2020.104044.
    10.1016/j.jprot.2020.104044
  65. Lucia Grenga; Jean Armengaud. "Proteomics in the COVID-19 Battlefield: First Semester Check-Up". PROTEOMICS (2021): 2000198-2000198. https://doi.org/10.1002/pmic.202000198.
    10.1002/pmic.202000198
  66. Guesmi, Sihem; Pujic, Petar; Nouioui, Imen; Dubost, Audrey; Najjari, Afef; Ghedira, Kais; Igual, José M.; et al. "Ionizing-radiation-resistant Kocuria rhizophila PT10 isolated from the Tunisian Sahara xerophyte Panicum turgidum: Polyphasic characterization and proteogenomic arsenal". Genomics 113 1 (2021): 317-330. http://dx.doi.org/10.1016/j.ygeno.2020.11.029.
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  67. Rosner, Amalia; Armengaud, Jean; Ballarin, Loriano; Barnay-Verdier, Stephanie; Cima, Francesca; Coelho, Ana Varela; Domart-Coulon, Isabelle; et al. "Stem cells of aquatic invertebrates as an advanced tool for assessing ecotoxicological impacts". Science of the Total Environment (2021): https://publons.com/wos-op/publon/42137915/.
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  68. Stimmer, Lev; Confais, Joachim; Jong, Anke't; Veth, Jennifer; Fovet, Claire-Maelle; Horellou, Philippe; Massonneau, Julie; et al. "Recombinant myelin oligodendrocyte glycoprotein quality modifies evolution of experimental autoimmune encephalitis in macaques". Laboratory Investigation (2021): https://publons.com/wos-op/publon/56041929/.
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  69. Hernandez-Enriquez, Marco; Belle, Loic; Madiot, Hende; Pansieri, Michel; Souteyrand, Geraud; de Poli, Fabiel; Piot, Christophe; et al. "Use and outcomes of thePKPapyrus covered stent in France:SOS PKPapyrus Registry". Catheterization and Cardiovascular Interventions (2021): https://publons.com/wos-op/publon/44133015/.
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  70. Gallais, Fabrice; Pible, Olivier; Gaillard, Jean-Charles; Debroas, Stephanie; Batina, Helene; Ruat, Sylvie; Sandron, Florian; et al. "Heterogeneity of SARS-CoV-2 virus produced in cell culture revealed by shotgun proteomics and supported by genome sequencing". Analytical and Bioanalytical Chemistry (2021): https://publons.com/wos-op/publon/46537933/.
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  71. Armengaud, Jean. "Unleashing immuno-mass spectrometry superpowers to detect SARS-CoV-2". EBioMedicine (2021): https://publons.com/wos-op/publon/56932082/.
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  72. Hamitouche, Fella; Gaillard, Jean-Charles; Schmitt, Philippe; Armengaud, Jean; Duport, Catherine; Dedieu, Luc. "Redox proteomic study of Bacillus cereus thiol proteome during fermentative anaerobic growth". BMC Genomics (2021): https://publons.com/wos-op/publon/56932081/.
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  73. Koenig, Natacha; Almunia, Christine; Bonnal-Conduzorgues, Aurore; Armengaud, Jean; Chaumot, Arnaud; Geffard, Olivier; Degli Esposti, Davide. "Co-expression network analysis identifies novel molecular pathways associated with cadmium and pyriproxyfen testicular toxicity in Gammarus fossarum". Aquatic Toxicology (2021): https://publons.com/wos-op/publon/46950009/.
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  74. Lepretre, Maxime; Faury, Nicole; Segarra, Amelie; Claverol, Stephane; Degremont, Lionel; Palos-Ladeiro, Melissa; Armengaud, Jean; Renault, Tristan; Morga, Benjamin. "Comparative Proteomics of Ostreid Herpesvirus 1 and Pacific Oyster Interactions With Two Families Exhibiting Contrasted Susceptibility to Viral Infection". Frontiers in Immunology (2021): https://publons.com/wos-op/publon/39282463/.
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  75. Torres, Rita; Sobral, Daniel; Fernandes, Ana; Sardoo, Atlas; Bernardes, Miguel; Pinto, Patricia; Santos, Helena; et al. "Molecular Profiling of Radiographic Axial Spondyloarthritis Patients -Reveals an Association Between Innate and Adaptive Cell Populations and Therapeutic Response to Adalimumab". Arthritis & Rheumatology (2021): https://publons.com/wos-op/publon/56932098/.
  76. van den Bossche, Tim; Arntzen, Magnus O.; Becher, Dorte; Benndorf, Dirk; Eijsink, Vincent G. H.; Henry, Celine; Jagtap, Pratik D.; et al. "The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes". Microbiome (2021): https://publons.com/wos-op/publon/50659069/.
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  77. Van Eesbeeck, Valerie; Props, Ruben; Mysara, Mohamed; Petit, Pauline C. M.; Rivasseau, Corinne; Armengaud, Jean; Monsieurs, Pieter; Mahillon, Jacques; Leys, Natalie. "Cyclical Patterns Affect Microbial Dynamics in the Water Basin of a Nuclear Research Reactor". Frontiers in Microbiology (2021): https://publons.com/wos-op/publon/53871327/.
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  78. Boulghobra, Doria; Dubois, Mathilde; Alpha-Bazin, Beatrice; Coste, Florence; Olmos, Maxime; Gayrard, Sandrine; Bornard, Isabelle; et al. "Increased protein S-nitrosylation in mitochondria: a key mechanism of exercise-induced cardioprotection". Basic Research in Cardiology (2021): https://publons.com/wos-op/publon/56932080/.
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  79. Pinel-Cabello, M.; Chapon, V; Ruiz-Fresneda, M. A.; Alpha-Bazin, B.; Berthomieu, C.; Armengaud, J.; Merroun, M. L.. "Delineation of cellular stages and identification of key proteins for reduction and biotransformation of Se(IV) by Stenotrophomonas bentonitica BII-R7". Journal of Hazardous Materials (2021): https://publons.com/wos-op/publon/47494422/.
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  80. Sobral, D.; Fernandes, A. F.; Mashayekhi Sardoo, A.; Bernardes, M.; Pinto, P.; Santos, H.; Gomes, J. L.; et al. "MOLECULAR PROFILING OF RADIOGRAPHIC AXIAL SPONDYLOARTHRITIS PATIENTS REVEALS AN ASSOCIATION BETWEEN INNATE AND ADAPTIVE CELL POPULATIONS AND THERAPEUTIC RESPONSE TO ADALIMUMAB". Annals of the Rheumatic Diseases (2021): https://publons.com/wos-op/publon/51296820/.
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  81. Olivier Pible; François Allain; Virginie Jouffret; Karen Culotta; Guylaine Miotello; Jean Armengaud. "Estimating relative biomasses of organisms in microbiota using “phylopeptidomics”". Microbiome (2020): https://doi.org/10.1186/s40168-020-00797-x.
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  82. Pauline C. M. Petit; Olivier Pible; Valérie Van Eesbeeck; Claude Alban; Gérard Steinmetz; Mohamed Mysara; Pieter Monsieurs; Jean Armengaud; Corinne Rivasseau. "Direct Meta-Analyses Reveal Unexpected Microbial Life in the Highly Radioactive Water of an Operating Nuclear Reactor Core". Microorganisms 8 12 (2020): 1857-1857. https://doi.org/10.3390/microorganisms8121857.
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  83. Semedo, José N; Rodrigues, Ana P; Lidon, Fernando C; Pais, Isabel P; Marques, Isabel; Gouveia, Duarte; Armengaud, Jean; et al. "Intrinsic non-stomatal resilience to drought of the photosynthetic apparatus in Coffea spp. is strengthened by elevated air [CO2]". Tree Physiology 41 5 (2020): 708-727. http://dx.doi.org/10.1093/treephys/tpaa158.
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  84. Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; et al. "Author Correction: Roadmap for naming uncultivated Archaea and Bacteria". Nature Microbiology 6 1 (2020): 136-136. http://dx.doi.org/10.1038/s41564-020-00827-2.
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  85. Karim Hayoun; Emilie Geersens; Cedric Laczny; Rashi Halder; Carmen Lázaro Sánchez; Abhijit Manna; Françoise Bringel; et al. "Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics". Microorganisms (2020): https://www.mdpi.com/2076-2607/8/12/1876.
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  86. Duport, Catherine; Rousset, Ludivine; Alpha-Bazin, Béatrice; Armengaud, Jean. "Bacillus cereus Decreases NHE and CLO Exotoxin Synthesis to Maintain Appropriate Proteome Dynamics During Growth at Low Temperature". Toxins 12 10 (2020): 645. http://dx.doi.org/10.3390/toxins12100645.
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  87. Karim Hayoun; Olivier Pible; Pauline Petit; François Allain; Virginie Jouffret; Karen Culotta; Corinne Rivasseau; Jean Armengaud; Béatrice Alpha-Bazin. "Proteotyping Environmental Microorganisms by Phylopeptidomics: Case Study Screening Water from a Radioactive Material Storage Pool". Microorganisms (2020): https://doi.org/10.3390/microorganisms8101525.
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  88. Rousset, Ludivine; Alpha-Bazin, Béatrice; Château, Alice; Armengaud, Jean; Clavel, Thierry; Berge, Odile; Duport, Catherine; Jean, Armengaud. "Groundwater promotes emergence of asporogenic mutants of emetic Bacillus cereus". Environmental Microbiology 22 12 (2020): 5248-5264. http://dx.doi.org/10.1111/1462-2920.15203.
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  89. Uroz, Stéphane; Picard, Laura; Turpault, Marie-Pierre; Auer, Lucas; Armengaud, Jean; Oger, Phil; Jean, Armengaud. "Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1 (12) and mineral". Environmental Microbiology 22 9 (2020): 3838-3862. http://dx.doi.org/10.1111/1462-2920.15159.
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  90. Dubberstein, Danielly; Lidon, Fernando C.; Rodrigues, Ana P.; Semedo, José N.; Marques, Isabel; Rodrigues, Weverton P.; Gouveia, Duarte; et al. "Resilient and Sensitive Key Points of the Photosynthetic Machinery of Coffea spp. to the Single and Superimposed Exposure to Severe Drought and Heat Stresses". Frontiers in Plant Science 11 (2020): http://dx.doi.org/10.3389/fpls.2020.01049.
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  91. Anastasi, Cyril; Rousselle, Patricia; Talantikite, Maya; Tessier, Agnès; Cluzel, Caroline; Bachmann, Alice; Mariano, Natacha; et al. "BMP-1 disrupts cell adhesion and enhances TGF-ß activation through cleavage of the matricellular protein thrombospondin-1". Science Signaling 13 639 (2020): http://dx.doi.org/10.1126/scisignal.aba3880.
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  92. Jean, Armengaud. "The proteomics contribution to the counter-bioterrorism toolbox in the post-COVID-19 era.". Expert review of proteomics (2020): https://doi.org/10.1080/14789450.2020.1822745.
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  93. Gouveia, Duarte; Grenga, Lucia; Gaillard, Jean-Charles; Gallais, Fabrice; Bellanger, Laurent; Pible, Olivier; Armengaud, Jean. "Shortlisting SARS-CoV-2 Peptides for Targeted Studies from Experimental Data-Dependent Acquisition Tandem Mass Spectrometry Data". PROTEOMICS 20 14 (2020): 2000107. http://dx.doi.org/10.1002/pmic.202000107.
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  94. Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; et al. "Roadmap for naming uncultivated Archaea and Bacteria". Nature Microbiology 5 8 (2020): 987-994. http://dx.doi.org/10.1038/s41564-020-0733-x.
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  95. Gouveia, Duarte; Pible, Olivier; Culotta, Karen; Jouffret, Virginie; Geffard, Olivier; Chaumot, Arnaud; Degli-Esposti, Davide; Armengaud, Jean. "Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host". npj Biofilms and Microbiomes 6 1 (2020): http://dx.doi.org/10.1038/s41522-020-0133-2.
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  96. Hardouin, P.; Pible, O.; Marchandin, H.; Chiron, R.; Armengaud, J.; Grenga, L.. "P084 Quick full-range determination of the composition of the cystic fibrosis lung microbiome from sputum by phylopeptidomics". Journal of Cystic Fibrosis 19 (2020): S79. http://dx.doi.org/10.1016/s1569-1993(20)30419-7.
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  97. Armengaud, Jean; Delaunay-Moisan, Agnès; Thuret, Jean-Yves; Anken, Eelco; Acosta-Alvear, Diego; Aragón, Tomás; Arias, Carolina; et al. "The importance of naturally attenuated SARS-CoV -2 in the fight against COVID -19". Environmental Microbiology 22 6 (2020): 1997-2000. http://dx.doi.org/10.1111/1462-2920.15039.
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  98. Struwe, Weston; Emmott, Edward; Bailey, Melanie; Sharon, Michal; Sinz, Andrea; Corrales, Fernando J; Thalassinos, Kostas; et al. "The COVID-19 MS Coalition—accelerating diagnostics, prognostics, and treatment". The Lancet 395 10239 (2020): 1761-1762. http://dx.doi.org/10.1016/s0140-6736(20)31211-3.
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  99. Díaz-Cárdenas, Carolina; Rojas, Laura Yinneth; Fiorentino, Susana; Cala, Monica P.; Díaz, Jorge I; Ramos, Freddy A.; Armengaud, Jean; Restrepo, Silvia; Baena, Sandra. "Bioactive Potential of Extracts of Labrenzia aggregata Strain USBA 371, a Halophilic Bacterium Isolated from a Terrestrial Source". Molecules 25 11 (2020): 2546. http://dx.doi.org/10.3390/molecules25112546.
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  100. Cogne, Yannick; Gouveia, Duarte; Chaumot, Arnaud; Degli-Esposti, Davide; Geffard, Olivier; Pible, Olivier; Almunia, Christine; Armengaud, Jean; Jean, Armengaud. "Proteogenomics-Guided Evaluation of RNA-Seq Assembly and Protein Database Construction for Emergent Model Organisms". PROTEOMICS 20 10 (2020): 1900261. http://dx.doi.org/10.1002/pmic.201900261.
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  101. Duarte Gouveia; Lucia Grenga; Olivier Pible; Jean Armengaud. "Quick microbial molecular phenotyping by differential shotgun proteomics". Environmental Microbiology (2020): https://doi.org/10.1111/1462-2920.14975.
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  102. Le Saux, Sarah; Aarrass, Hanna; Lai-Kee-Him, Joséphine; Bron, Patrick; Armengaud, Jean; Miotello, Guylaine; Bertrand-Michel, Justine; et al. "Post-production modifications of murine mesenchymal stem cell (mMSC) derived extracellular vesicles (EVs) and impact on their cellular interaction". Biomaterials 231 (2020): 119675. http://dx.doi.org/10.1016/j.biomaterials.2019.119675.
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  103. Laurent Marichal; Géraldine Klein; Jean Armengaud; Yves Boulard; Stéphane Chédin; Jean Labarre; Serge Pin; Jean-Philippe Renault; Jean-Christophe Aude. "Protein Corona Composition of Silica Nanoparticles in Complex Media: Nanoparticle Size does not Matter". Nanomaterials 10 2 (2020): 240-240. https://doi.org/10.3390/nano10020240.
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  104. Mathilde Biola-Clier; Jean-Charles Gaillard; Thierry Rabilloud; Jean Armengaud; Marie Carriere. "Titanium Dioxide Nanoparticles Alter the Cellular Phosphoproteome in A549 Cells". Nanomaterials 10 2 (2020): 185-185. https://doi.org/10.3390/nano10020185.
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  105. Grenga, Lucia; Gallais, Fabrice; Pible, Olivier; Gaillard, Jean-Charles; Gouveia, Duarte; Batina, Hélène; Bazaline, Niza; et al. "Shotgun proteomics analysis of SARS-CoV-2-infected cells and how it can optimize whole viral particle antigen production for vaccines". Emerging Microbes & Infections 9 1 (2020): 1712-1721. http://dx.doi.org/10.1080/22221751.2020.1791737.
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  106. Lepretre, Maxime; Palos-Ladeiro, Melissa; Faugere, Julien; Almunia, Christine; Lemoine, Jerome; Armengaud, Jean; Geffard, Alain; Salvador, Arnaud. "From shotgun to targeted proteomics: rapid Scout-MRM assay development for monitoring potential immunomarkers in Dreissena polymorpha". Analytical and Bioanalytical Chemistry (2020): https://publons.com/wos-op/publon/33768896/.
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  107. Faugere, Julien; Gouveia, Duarte; Ayciriex, Sophie; Chaumot, Arnaud; Almunia, Christine; Francois, Adeline; Armengaud, Jean; et al. "High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics". Journal of Proteomics (2020): https://publons.com/wos-op/publon/33768904/.
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  108. Lepretre, Maxime; Almunia, Christine; Armengaud, Jean; Le Guernic, Antoine; Salvador, Arnaud; Geffard, Alain; Palos-Ladeiro, Melissa. "Identification of immune-related proteins of Dreissena polymorpha hemocytes and plasma involved in host-microbe interactions by differential proteomics". Scientific Reports (2020): https://publons.com/wos-op/publon/38782673/.
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  109. Hayoun, Karim; Gaillard, Jean-Charles; Pible, Olivier; Alpha-Bazin, Beatrice; Armengaud, Jean. "High-throughput proteotyping of bacterial isolates by double barrel chromatography-tandem mass spectrometry based on microplate paramagnetic beads and phylopeptidomics". Journal of Proteomics (2020): https://publons.com/wos-op/publon/46243552/.
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  110. Gouveia, Duarte; Miotello, Guylaine; Gallais, Fabrice; Gaillard, Jean-Charles; Debroas, Stephanie; Bellanger, Laurent; Lavigne, Jean-Philippe; et al. "Proteotyping SARS-CoV-2 Virus from Nasopharyngeal Swabs: A Proof-of-Concept Focused on a 3 Min Mass Spectrometry Window". Journal of Proteome Research (2020): https://publons.com/wos-op/publon/33264427/.
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  112. Davide Degli Esposti; Christine Almunia; Marc-Antoine Guery; Natacha Koenig; Jean Armengaud; Arnaud Chaumot; Olivier Geffard. "Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum". Scientific Reports (2019): https://doi.org/10.1038/s41598-019-44203-5.
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  114. Ganter, Sarah; Miotello, Guylaine; Manso-Silván, Lucía; Armengaud, Jean; Tardy, Florence; Gaurivaud, Patrice; Thiaucourt, François. "Proteases as Secreted Exoproteins in Mycoplasmas from Ruminant Lungs and Their Impact on Surface-Exposed Proteins". Applied and Environmental Microbiology 85 23 (2019): http://dx.doi.org/10.1128/aem.01439-19.
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  115. Borcier, Elodie; Artigaud, Sébastien; Gaillard, Jean-Charles; Armengaud, Jean; Charrier, Grégory; Couteau, Jérôme; Receveur, Justine; et al. "Coupling caging and proteomics on the European flounder (Platichthys flesus) to assess the estuarine water quality at micro scale". Science of The Total Environment 695 (2019): 133760. http://dx.doi.org/10.1016/j.scitotenv.2019.133760.
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  116. Ganter, Sarah; Miotello, Guylaine; Manso-Silván, Lucía; Armengaud, Jean; Tardy, Florence; Gaurivaud, Patrice; Thiaucourt, François. "Proteases as Secreted Exoproteins in Mycoplasmas from Ruminant Lungs and Their Impact on Surface-Exposed Proteins". Applied and Environmental Microbiology 85 23 (2019): http://dx.doi.org/10.1128/aem.01439-19.
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  117. Ortet, Philippe; Gallois, Nicolas; Long, Justine; Zirah, Séverine; Berthomieu, Catherine; Armengaud, Jean; Alpha-Bazin, Béatrice; Barakat, Mohamed; Chapon, Virginie. "Complete Genome Sequences of Four Microbacterium Strains Isolated from Metal- and Radionuclide-Rich Soils". Microbiology Resource Announcements 8 42 (2019): http://dx.doi.org/10.1128/mra.00846-19.
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  118. Duport; Alpha-Bazin; Armengaud; Jean, Armengaud. "Advanced Proteomics as a Powerful Tool for Studying Toxins of Human Bacterial Pathogens". Toxins 11 10 (2019): 576. http://dx.doi.org/10.3390/toxins11100576.
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  120. Cogne, Yannick; Degli-Esposti, Davide; Pible, Olivier; Gouveia, Duarte; François, Adeline; Bouchez, Olivier; Eché, Camille; et al. "De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups". Scientific Data 6 1 (2019): http://dx.doi.org/10.1038/s41597-019-0192-5.
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  122. Jean, Armengaud. "Microbiology and infectious diseases – A wealth of novelty for the clinical laboratory". Clinical Mass Spectrometry 14 (2019): 1-2. http://dx.doi.org/10.1016/j.clinms.2019.04.005.
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  124. Heumüller, Stefanie Elisabeth; Talantikite, Maya; Napoli, Manon; Armengaud, Jean; Mörgelin, Matthias; Hartmann, Ursula; Sengle, Gerhard; et al. "C-terminal proteolysis of the collagen VI a3 chain by BMP-1 and proprotein convertase(s) releases endotrophin in fragments of different sizes". Journal of Biological Chemistry 294 37 (2019): 13769-13780. http://dx.doi.org/10.1074/jbc.ra119.008641.
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  126. Leprêtre, Maxime; Almunia, Christine; Armengaud, Jean; Salvador, Arnaud; Geffard, Alain; Palos-Ladeiro, Mélissa; Jean, Armengaud. "The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments". Journal of Proteomics 202 (2019): 103366. http://dx.doi.org/10.1016/j.jprot.2019.04.016.
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  127. Béthencourt, Lorine; Boubakri, Hasna; Taib, Najwa; Normand, Philippe; Armengaud, Jean; Fournier, Pascale; Brochier-Armanet, Céline; Herrera-Belaroussi, Aude; Jean, Armengaud. "Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation". Research in Microbiology 170 4-5 (2019): 202-213. http://dx.doi.org/10.1016/j.resmic.2019.04.002.
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  128. Pujic, Petar; Alloisio, Nicole; Fournier, Pascale; Roche, David; Sghaier, Haitham; Miotello, Guylaine; Armengaud, Jean; et al. "Omics of the early molecular dialogue betweenFrankia alniandAlnus glutinosaand the cellulase synton". Environmental Microbiology 21 9 (2019): 3328-3345. http://dx.doi.org/10.1111/1462-2920.14606.
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  129. Gouveia, Duarte; Almunia, Christine; Cogne, Yannick; Pible, Olivier; Degli-Esposti, Davide; Salvador, Arnaud; Cristobal, Susana; et al. "Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment". Journal of Proteomics 198 (2019): 66-77. http://dx.doi.org/10.1016/j.jprot.2018.12.001.
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  130. Tarrago, Lionel; Grosse, Sandrine; Siponen, Marina I.; Lemaire, David; Alonso, Béatrice; Miotello, Guylaine; Armengaud, Jean; et al. "Rhodobacter sphaeroides methionine sulfoxide reductase P reduces R- and S-diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates". Biochemical Journal 475 23 (2018): 3779-3795. http://dx.doi.org/10.1042/bcj20180706.
    10.1042/bcj20180706
  131. Nicolas Gallois; Laurie Piette; Philippe Ortet; Mohamed Barakat; Justine Long; Catherine Berthomieu; Jean Armengaud; Virginie Chapon; Béatrice Alpha-Bazin. "Proteomics data for characterizing Microbacterium oleivorans A9, an uranium-tolerant actinobacterium isolated near the Chernobyl nuclear power plant". Data in Brief 21 (2018): 1125-1129. https://doi.org/10.1016/j.dib.2018.10.136.
    10.1016/j.dib.2018.10.136
  132. Mappa, Charlotte; Pible, Olivier; Armengaud, Jean; Alpha-Bazin, Béatrice; Jean, Armengaud. "Assessing the ratio of Bacillus spores and vegetative cells by shotgun proteomics". Environmental Science and Pollution Research 28 20 (2018): 25107-25115. http://dx.doi.org/10.1007/s11356-018-3341-z.
    10.1007/s11356-018-3341-z
  133. Thiaucourt, François; Pible, Olivier; Miotello, Guylaine; Nwankpa, Nick; Armengaud, Jean; Jean, Armengaud. "Improving Quality Control of Contagious Caprine Pleuropneumonia Vaccine with Tandem Mass Spectrometry". PROTEOMICS 18 17 (2018): 1800088. http://dx.doi.org/10.1002/pmic.201800088.
    10.1002/pmic.201800088
  134. Rascol, Estelle; Pisani, Cédric; Dorandeu, Christophe; Nyalosaso, Jeff; Charnay, Clarence; Daurat, Morgane; Silva, Afitz; et al. "Biosafety of Mesoporous Silica Nanoparticles". Biomimetics 3 3 (2018): 22. http://dx.doi.org/10.3390/biomimetics3030022.
    10.3390/biomimetics3030022
  135. Trapp, Judith; Gouveia, Duarte; Almunia, Christine; Pible, Olivier; Degli Esposti, Davide; Gaillard, Jean-Charles; Chaumot, Arnaud; et al. "Digging Deeper Into the Pyriproxyfen-Response of the Amphipod Gammarus fossarum With a Next-Generation Ultra-High-Field Orbitrap Analyser: New Perspectives for Environmental Toxicoproteomics". Frontiers in Environmental Science 6 (2018): http://dx.doi.org/10.3389/fenvs.2018.00054.
    10.3389/fenvs.2018.00054
  136. Madeira, Jean-Paul; Alpha-Bazin, Béatrice; Armengaud, Jean; Duport, Catherine. "Time-course proteomics dataset to monitor protein-bound methionine oxidation in Bacillus cereus ATCC 14579". Data in Brief 18 (2018): 394-398. http://dx.doi.org/10.1016/j.dib.2018.03.030.
    10.1016/j.dib.2018.03.030
  137. Marichal, Laurent; Renault, Jean-Philippe; Chédin, Stéphane; Lagniel, Gilles; Klein, Géraldine; Aude, Jean-Christophe; Tellier-Lebegue, Carine; et al. "Importance of Post-translational Modifications in the Interaction of Proteins with Mineral Surfaces: The Case of Arginine Methylation and Silica surfaces". Langmuir 34 18 (2018): 5312-5322. http://dx.doi.org/10.1021/acs.langmuir.8b00752.
    10.1021/acs.langmuir.8b00752
  138. Gallois, Nicolas; Alpha-Bazin, Béatrice; Ortet, Philippe; Barakat, Mohamed; Piette, Laurie; Long, Justine; Berthomieu, Catherine; et al. "Proteogenomic insights into uranium tolerance of a Chernobyl's Microbacterium bacterial isolate". Journal of Proteomics 177 (2018): 148-157. http://dx.doi.org/10.1016/j.jprot.2017.11.021.
    10.1016/j.jprot.2017.11.021
  139. Gouveia, D.; Bonneton, F.; Almunia, C.; Armengaud, J.; Quéau, H.; Degli-Esposti, D.; Geffard, O.; Chaumot, A.; Jean, Armengaud. "Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum". Scientific Reports 8 1 (2018): http://dx.doi.org/10.1038/s41598-018-22235-7.
    10.1038/s41598-018-22235-7
  140. Ghedira, Kais; Harigua-Souiai, Emna; Ben Hamda, Cherif; Fournier, Pascale; Pujic, Petar; Guesmi, Sihem; Guizani, Ikram; et al. "The PEG-responding desiccome of the alder microsymbiont Frankia alni". Scientific Reports 8 1 (2018): http://dx.doi.org/10.1038/s41598-017-18839-0.
    10.1038/s41598-017-18839-0
  141. Gouveia, Duarte; Chaumot, Arnaud; Charnot, Aurore; Almunia, Christine; François, Adeline; Navarro, Lionel; Armengaud, Jean; et al. "Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods". Environmental Science & Technology 51 22 (2017): 13417-13426. http://dx.doi.org/10.1021/acs.est.7b03736.
    10.1021/acs.est.7b03736
  142. Jean, Armengaud. "In Vino Veritas: An Invitation for Ambitious, Collaborative Proteogenomics Campaigns on Plant and Animal Models.". Proteomics (2017): https://doi.org/10.1002/pmic.201700324.
    10.1002/pmic.201700324
  143. Armengaud, Jean; Pible, Olivier; Gaillard, Jean-Charles; Cian, Amandine; Gantois, Nausicaa; Tan, Kevin S. W.; Chabé, Magali; Viscogliosi, Eric; Jean, Armengaud. "Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1". PROTEOMICS 17 21 (2017): 1700211. http://dx.doi.org/10.1002/pmic.201700211.
    10.1002/pmic.201700211
  144. Miotello, Guylaine; Ktari, Amir; Gueddou, Abdellatif; Nouioui, Imen; Ghodhbane-Gtari, Faten; Armengaud, Jean; Gtari, Maher; Jean, Armengaud. "Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants". Data in Brief 14 (2017): 73-76. http://dx.doi.org/10.1016/j.dib.2017.07.009.
    10.1016/j.dib.2017.07.009
  145. Gouveia, D.; Chaumot, A.; Charnot, A.; Queau, H.; Armengaud, J.; Almunia, C.; Salvador, A.; Geffard, O.; Jean, Armengaud. "Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum: A physiological and ecotoxicological study". Aquatic Toxicology 190 (2017): 199-209. http://dx.doi.org/10.1016/j.aquatox.2017.07.007.
    10.1016/j.aquatox.2017.07.007
  146. Pisani, Cédric; Rascol, Estelle; Dorandeu, Christophe; Gaillard, Jean-Charles; Charnay, Clarence; Guari, Yannick; Chopineau, Joël; et al. "The species origin of the serum in the culture medium influences the in vitro toxicity of silica nanoparticles to HepG2 cells". PLOS ONE 12 8 (2017): e0182906. http://dx.doi.org/10.1371/journal.pone.0182906.
    10.1371/journal.pone.0182906
  147. Madeira, Jean-Paul; Alpha-Bazin, Béatrice M.; Armengaud, Jean; Duport, Catherine; Jean, Armengaud. "Methionine Residues in Exoproteins and Their Recycling by Methionine Sulfoxide Reductase AB Serve as an Antioxidant Strategy in Bacillus cereus". Frontiers in Microbiology 8 (2017): http://dx.doi.org/10.3389/fmicb.2017.01342.
    10.3389/fmicb.2017.01342
  148. Christie-Oleza, Joseph A.; Sousoni, Despoina; Lloyd, Matthew; Armengaud, Jean; Scanlan, David J.; Jean, Armengaud. "Nutrient recycling facilitates long-term stability of marine microbial phototroph–heterotroph interactions". Nature Microbiology 2 9 (2017): http://dx.doi.org/10.1038/nmicrobiol.2017.100.
    10.1038/nmicrobiol.2017.100
  149. Balzergue, Coline; Dartevelle, Thibault; Godon, Christian; Laugier, Edith; Meisrimler, Claudia; Teulon, Jean-Marie; Creff, Audrey; et al. "Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation". Nature Communications 8 1 (2017): http://dx.doi.org/10.1038/ncomms15300.
    10.1038/ncomms15300
  150. Ktari, Amir; Gueddou, Abdellatif; Nouioui, Imen; Miotello, Guylaine; Sarkar, Indrani; Ghodhbane-Gtari, Faten; Sen, Arnab; et al. "Host Plant Compatibility Shapes the Proteogenome of Frankia coriariae". Frontiers in Microbiology 8 (2017): http://dx.doi.org/10.3389/fmicb.2017.00720.
    10.3389/fmicb.2017.00720
  151. Charnot, Aurore; Gouveia, Duarte; Armengaud, Jean; Almunia, Christine; Chaumot, Arnaud; Lemoine, Jérôme; Geffard, Olivier; Salvador, Arnaud; Jean, Armengaud. "Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry". Analytical and Bioanalytical Chemistry 409 16 (2017): 3969-3991. http://dx.doi.org/10.1007/s00216-017-0348-0.
    10.1007/s00216-017-0348-0
  152. Blanchard, Laurence; Guérin, Philippe; Roche, David; Cruveiller, Stéphane; Pignol, David; Vallenet, David; Armengaud, Jean; de Groot, Arjan; Jean, Armengaud. "Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria". MicrobiologyOpen 6 4 (2017): e00477. http://dx.doi.org/10.1002/mbo3.477.
    10.1002/mbo3.477
  153. Ortet, Philippe; Gallois, Nicolas; Piette, Laurie; Long, Justine; Berthomieu, Catherine; Armengaud, Jean; Barakat, Mohamed; Chapon, Virginie; Jean, Armengaud. "Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil". Genome Announcements 5 14 (2017): http://dx.doi.org/10.1128/genomea.00092-17.
    10.1128/genomea.00092-17
  154. Jean, Armengaud. "Defining Diagnostic Biomarkers Using Shotgun Proteomics and MALDI-TOF Mass Spectrometry.". Methods in molecular biology (Clifton, N.J.) (2017): https://doi.org/10.1007/978-1-4939-7037-7_6.
    10.1007/978-1-4939-7037-7_6
  155. Jean, Armengaud. "Striking against bioterrorism with advanced proteomics and reference methods.". Proteomics (2017): https://doi.org/10.1002/pmic.201600412.
    10.1002/pmic.201600412
  156. Jean, Armengaud. "Exoproteomics of Pathogens: Analysis of Toxins and Other Virulence Factors by Proteomics.". Methods in enzymology (2017): https://doi.org/10.1016/bs.mie.2016.09.033.
    10.1016/bs.mie.2016.09.033
  157. Samson, Camille; Celli, Florian; Hendriks, Kitty; Zinke, Maximilian; Essawy, Nada; Herrada, Isaline; Arteni, Ana-Andreea; et al. "Emerin self-assembly mechanism: role of the LEM domain". The FEBS Journal 284 2 (2017): 338-352. http://dx.doi.org/10.1111/febs.13983.
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  158. Pisani, Cédric; Gaillard, Jean-Charles; Odorico, Michaël; Nyalosaso, Jeff L.; Charnay, Clarence; Guari, Yannick; Chopineau, Joël; et al. "The timeline of corona formation around silica nanocarriers highlights the role of the protein interactome". Nanoscale 9 5 (2017): 1840-1851. http://dx.doi.org/10.1039/c6nr04765c.
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  159. Pisani, C.; Gaillard, J. C.; Dorandeu, C.; Charnay, C.; Guari, Y.; Chopineau, J.; Devoisselle, J. M.; et al. "Experimental separation steps influence the protein content of corona around mesoporous silica nanoparticles". Nanoscale 9 18 (2017): 5769-5772. http://dx.doi.org/10.1039/c7nr01654a.
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  160. Didier, Romain; Morice, Marie Claude; Barragan, Paul; Noryani, Arif A. L.; Noor, Hussam A.; Majwal, Talib; Hovasse, Thomas; et al. "6-Versus 24-Month Dual Antiplatelet Therapy After Implantation of Drug-Eluting Stents in Patients Nonresistant to Aspirin Final Results of the ITALIC Trial (Is There a Life for DES After Discontinuation of Clopidogrel)". JACC: Cardiovascular Interventions (2017): https://publons.com/wos-op/publon/35054558/.
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  161. Klein, Géraldine; Mathé, Christelle; Biola-Clier, Mathilde; Devineau, Stéphanie; Drouineau, Emilie; Hatem, Elie; Marichal, Laurent; et al. "RNA-binding proteins are a major target of silica nanoparticles in cell extracts". Nanotoxicology 10 10 (2016): 1555-1564. http://dx.doi.org/10.1080/17435390.2016.1244299.
    10.1080/17435390.2016.1244299
  162. Jean, Armengaud. "Reannotation of Genomes by Means of Proteomics Data.". Methods in enzymology (2016): https://doi.org/10.1016/bs.mie.2016.09.019.
    10.1016/bs.mie.2016.09.019
  163. Barbier, Ewa; Lagorce, Arnaud; Hachemi, Amine; Dutertre, Murielle; Gorlas, Aurore; Morand, Lucie; Saint-Pierre, Christine; et al. "Oxidative DNA Damage and Repair in the Radioresistant Archaeon Thermococcus gammatolerans". Chemical Research in Toxicology 29 11 (2016): 1796-1809. http://dx.doi.org/10.1021/acs.chemrestox.6b00128.
    10.1021/acs.chemrestox.6b00128
  164. Trapp, Judith; Gaillard, Jean-Charles; Chaumot, Arnaud; Geffard, Olivier; Pible, Olivier; Armengaud, Jean; Jean, Armengaud. "Ovary and embryo proteogenomic dataset revealing diversity of vitellogenins in the crustacean Gammarus fossarum". Data in Brief 8 (2016): 1259-1262. http://dx.doi.org/10.1016/j.dib.2016.07.045.
    10.1016/j.dib.2016.07.045
  165. Madeira, Jean-Paul; Alpha-Bazin, Béatrice; Armengaud, Jean; Omer, Hélène; Duport, Catherine. "Proteome data to explore the impact of pBClin15 on Bacillus cereus ATCC 14579". Data in Brief 8 (2016): 1243-1246. http://dx.doi.org/10.1016/j.dib.2016.07.042.
    10.1016/j.dib.2016.07.042
  166. Trapp, Judith; Armengaud, Jean; Gaillard, Jean-Charles; Pible, Olivier; Chaumot, Arnaud; Geffard, Olivier; Jean, Armengaud. "High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum". Journal of Proteomics 146 (2016): 207-214. http://dx.doi.org/10.1016/j.jprot.2016.07.007.
    10.1016/j.jprot.2016.07.007
  167. Madeira, Jean-Paul; Omer, Hélène; Alpha-Bazin, Béatrice; Armengaud, Jean; Duport, Catherine; Jean, Armengaud. "Deciphering the interactions between the Bacillus cereus linear plasmid, pBClin15, and its host by high-throughput comparative proteomics". Journal of Proteomics 146 (2016): 25-33. http://dx.doi.org/10.1016/j.jprot.2016.06.022.
    10.1016/j.jprot.2016.06.022
  168. Zhu, Xun; Xie, Shangbo; Armengaud, Jean; Xie, Wen; Guo, Zhaojiang; Kang, Shi; Wu, Qingjun; et al. "Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline". Molecular & Cellular Proteomics 15 6 (2016): 1791-1807. http://dx.doi.org/10.1074/mcp.m115.050989.
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  169. Zhang, Sheng-Da; Santini, Claire-Lise; Zhang, Wei-Jia; Barbe, Valérie; Mangenot, Sophie; Guyomar, Charlotte; Garel, Marc; et al. "Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200". Extremophiles 20 3 (2016): 301-310. http://dx.doi.org/10.1007/s00792-016-0822-1.
    10.1007/s00792-016-0822-1
  170. Jean, Armengaud. "Next-generation proteomics faces new challenges in environmental biotechnology.". Current opinion in biotechnology (2016): http://europepmc.org/abstract/med/26950175.
    10.1016/j.copbio.2016.02.025
  171. Duriez, Elodie; Armengaud, Jean; Fenaille, François; Ezan, Eric; Jean, Armengaud. "Mass spectrometry for the detection of bioterrorism agents: from environmental to clinical applications". Journal of Mass Spectrometry 51 3 (2016): 183-199. http://dx.doi.org/10.1002/jms.3747.
    10.1002/jms.3747
  172. Devigne, Alice; Guérin, Philippe; Lisboa, Johnny; Quevillon-Cheruel, Sophie; Armengaud, Jean; Sommer, Suzanne; Bouthier de la Tour, Claire; Servant, Pascale; Jean, Armengaud. "PprA Protein Is Involved in Chromosome Segregation via Its Physical and Functional Interaction with DNA Gyrase in Irradiated Deinococcus radiodurans Bacteria". mSphere 1 1 (2016): http://dx.doi.org/10.1128/msphere.00036-15.
    10.1128/msphere.00036-15
  173. Kish, Adrienne; Gaillard, Jean-Charles; Armengaud, Jean; Elie, Christiane; Jean, Armengaud. "Post-translational methylations of the archaeal Mre11:Rad50 complex throughout the DNA damage response". Molecular Microbiology 100 2 (2016): 362-378. http://dx.doi.org/10.1111/mmi.13322.
    10.1111/mmi.13322
  174. Locard-Paulet, Marie; Pible, Olivier; Gonzalez de Peredo, Anne; Alpha-Bazin, Béatrice; Almunia, Christine; Burlet-Schiltz, Odile; Armengaud, Jean; Jean, Armengaud. "Clinical implications of recent advances in proteogenomics". Expert Review of Proteomics 13 2 (2016): 185-199. http://dx.doi.org/10.1586/14789450.2016.1132169.
    10.1586/14789450.2016.1132169
  175. Abby, Emilie; Tourpin, Sophie; Ribeiro, Jonathan; Daniel, Katrin; Messiaen, Sébastien; Moison, Delphine; Guerquin, Justine; et al. "Implementation of meiosis prophase I programme requires a conserved retinoid-independent stabilizer of meiotic transcripts". Nature Communications 7 1 (2016): http://dx.doi.org/10.1038/ncomms10324.
    10.1038/ncomms10324
  176. Cuenca, María del Sol; Roca, Amalia; Molina-Santiago, Carlos; Duque, Estrella; Armengaud, Jean; Gómez-Garcia, María R.; Ramos, Juan L.. "Understanding butanol tolerance and assimilation in P seudomonas putida BIRD -1: an integrated omics approach". Microbial Biotechnology 9 1 (2016): 100-115. http://dx.doi.org/10.1111/1751-7915.12328.
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  177. Pisani, C.; Gaillard, J.; Odorico, M.; Nyalosaso, J.; Charnay, C.; Guari, Y.; Chopineau, J.; et al. "Corona interactome: A key for deciphering protein adsorption kinetics on silica nanocarriers surface". Toxicology Letters (2016): https://publons.com/wos-op/publon/3425726/.
    10.1016/J.TOXLET.2016.06.1980
  178. Bouthier de la Tour, Claire; Armengaud, Jean; Dulermo, Rémi; Blanchard, Laurence; Devigne, Alice; de Groot, Arjan; Ludanyi, Monika; Sommer, Suzanne; Jean, Armengaud. "The abundant and essential HU proteins in Deinococcus deserti and Deinococcus radiodurans are translated from leaderless mRNA". Microbiology 161 12 (2015): 2410-2422. http://dx.doi.org/10.1099/mic.0.000186.
    10.1099/mic.0.000186
  179. Trapp, Judith; Almunia, Christine; Gaillard, Jean-Charles; Pible, Olivier; Chaumot, Arnaud; Geffard, Olivier; Armengaud, Jean; Jean, Armengaud. "Data for comparative proteomics of ovaries from five non-model, crustacean amphipods". Data in Brief 5 (2015): 1-6. http://dx.doi.org/10.1016/j.dib.2015.07.037.
    10.1016/j.dib.2015.07.037
  180. Christie-Oleza, Joseph A.; Armengaud, Jean; Jean, Armengaud. "Proteomics of theRoseobacterclade, a window to the marine microbiology landscape". PROTEOMICS 15 23-24 (2015): 3928-3942. http://dx.doi.org/10.1002/pmic.201500222.
    10.1002/pmic.201500222
  181. Omer, Hélène; Alpha-Bazin, Béatrice; Brunet, Jean-Luc; Armengaud, Jean; Duport, Catherine; Jean, Armengaud. "Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors". Frontiers in Microbiology 6 (2015): http://dx.doi.org/10.3389/fmicb.2015.01004.
    10.3389/fmicb.2015.01004
  182. Thiaville, Patrick C.; El Yacoubi, Basma; Köhrer, Caroline; Thiaville, Jennifer J.; Deutsch, Chris; Iwata-Reuyl, Dirk; Bacusmo, Jo Marie; et al. "Essentiality of threonylcarbamoyladenosine (t6A), a universal tRNA modification, in bacteria". Molecular Microbiology 98 6 (2015): 1199-1221. http://dx.doi.org/10.1111/mmi.13209.
    10.1111/mmi.13209
  183. Jagtap, Pratik; Griffin, Tim; Armengaud, Jean; Jean, Armengaud. "Microbiomes - Embracing complexity". PROTEOMICS 15 20 (2015): 3405-3406. http://dx.doi.org/10.1002/pmic.201570183.
    10.1002/pmic.201570183
  184. Jean, Armengaud. "Power of positive thinking in quantitative proteomics.". Proteomics (2015): http://europepmc.org/abstract/med/26227558.
    10.1002/pmic.201500307
  185. Rubiano-Labrador, Carolina; Bland, Céline; Miotello, Guylaine; Armengaud, Jean; Baena, Sandra; Jean, Armengaud. "Salt Stress Induced Changes in the Exoproteome of the Halotolerant Bacterium Tistlia consotensis Deciphered by Proteogenomics". PLOS ONE 10 8 (2015): e0135065. http://dx.doi.org/10.1371/journal.pone.0135065.
    10.1371/journal.pone.0135065
  186. Trapp J; Almunia C; Gaillard JC; Pible O; Chaumot A; Geffard O; Armengaud J. "Proteogenomic insights into the core-proteome of female reproductive tissues from crustacean amphipods.". (2015): http://europepmc.org/abstract/med/26170043.
    10.1016/j.jprot.2015.06.017
  187. Pible O; Armengaud J. "Improving the quality of genome, protein sequence, and taxonomy databases: a prerequisite for microbiome meta-omics 2.0.". (2015): http://europepmc.org/abstract/med/26038180.
    10.1002/pmic.201500104
  188. Sghaier H; Hezbri K; Ghodhbane-Gtari F; Pujic P; Sen A; Daffonchio D; Boudabous A; et al. "Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes.". (2015): http://europepmc.org/abstract/med/26125681.
    10.1038/ismej.2015.108
  189. Christie-Oleza JA; Armengaud J; Guerin P; Scanlan DJ. "Functional distinctness in the exoproteomes of marine Synechococcus.". (2015): http://europepmc.org/abstract/med/25727668.
    10.1111/1462-2920.12822
  190. Christie-Oleza JA; Scanlan DJ; Armengaud J. ""You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions.". (2015): http://europepmc.org/abstract/med/25728650.
    10.1002/pmic.201400562
  191. Yang YS; Fernandez B; Lagorce A; Aloin V; De Guillen KM; Boyer JB; Dedieu A; et al. "Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans.". (2015): http://europepmc.org/abstract/med/25359407.
    10.1002/pmic.201300535
  192. Trapp J; Armengaud J; Pible O; Gaillard JC; Abbaci K; Habtoul Y; Chaumot A; Geffard O. "Proteomic investigation of male Gammarus fossarum, a freshwater crustacean, in response to endocrine disruptors.". (2015): http://europepmc.org/abstract/med/25363278.
    10.1021/pr500984z
  193. Madeira JP; Alpha-Bazin B; Armengaud J; Duport C. "Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation.". (2015): http://europepmc.org/abstract/med/25954265.
    10.3389/fmicb.2015.00342
  194. Pisani C; Gaillard JC; Nouvel V; Odorico M; Armengaud J; Prat O. "High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells: grasping complex toxicity with a great depth of field.". (2015): http://europepmc.org/abstract/med/25895662.
    10.1186/s12864-015-1521-5
  195. Gilard, Martine; Barragan, Paul; Noryani, Arif A. L.; Noor, Hussam A.; Majwal, Talib; Hovasse, Thomas; Castellant, Philippe; et al. "6-Versus 24-Month Dual Antiplatelet Therapy After Implantation of Drug-Eluting Stents in Patients Nonresistant to Aspirin The Randomized, Multicenter ITALIC Trial". JACC: Journal of the American College of Cardiology (2015): https://publons.com/wos-op/publon/6439440/.
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  196. Pisani, C.; Gaillard, J. -C.; Nouvel, V.; Odorico, M.; Armengaud, J.; Prat, O.. "High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells: Grasping complex toxicity with a great depth of field". Toxicology Letters (2015): https://publons.com/wos-op/publon/56932099/.
    10.1016/J.TOXLET.2015.08.678
  197. Omer, Helene; Alpha-Bazin, Beatrice; Brunet, Jean-Luc; Armengaud, Jean; Duport, Catherine. "Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors". Frontiers in Microbiology (2015): https://publons.com/wos-op/publon/472174/.
    10.3189/FMICB.2015.01004
  198. Trapp J; Armengaud J; Salvador A; Chaumot A; Geffard O. "Next-generation proteomics: toward customized biomarkers for environmental biomonitoring.". (2014): http://europepmc.org/abstract/med/25345346.
    10.1021/es501673s
  199. Trapp J; Geffard O; Imbert G; Gaillard JC; Davin AH; Chaumot A; Armengaud J. "Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods.". (2014): http://europepmc.org/abstract/med/25293947.
    10.1074/mcp.M114.038851
  200. Hartmann EM; Armengaud J. "N-terminomics and proteogenomics, getting off to a good start.". (2014): http://europepmc.org/abstract/med/25116052.
    10.1002/pmic.201400157
  201. Hartmann EM; Durighello E; Pible O; Nogales B; Beltrametti F; Bosch R; Christie-Oleza JA; Armengaud J. "Proteomics meets blue biotechnology: a wealth of novelties and opportunities.". (2014): http://europepmc.org/abstract/med/24780860.
    10.1016/j.margen.2014.04.003
  202. Durighello E; Bellanger L; Ezan E; Armengaud J. "Proteogenomic biomarkers for identification of Francisella species and subspecies by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry.". (2014): http://europepmc.org/abstract/med/25215633.
    10.1021/ac501840g
  203. Boyer JB; Dedieu A; Armengaud J; Verdié P; Subra G; Martinez J; Enjalbal C. "N- and O-acetylation of threonine residues in the context of proteomics.". (2014): http://europepmc.org/abstract/med/24937263.
    10.1016/j.jprot.2014.06.005
  204. Olivier Pible; Erica M. Hartmann; Gilles Imbert; Jean Armengaud. "The importance of recognizing and reporting sequence database contamination for proteomics". EuPA Open Proteomics 3 (2014): 246-249. http://dx.doi.org/10.1016/j.euprot.2014.04.001.
    10.1016/j.euprot.2014.04.001
  205. Armengaud J; Trapp J; Pible O; Geffard O; Chaumot A; Hartmann EM. "Non-model organisms, a species endangered by proteogenomics.". (2014): http://europepmc.org/abstract/med/24440519.
    10.1016/j.jprot.2014.01.007
  206. Berta P; Bourg G; Hanna N; Saadeh B; Armengaud J; Patey G; O'Callaghan D. "The Brucella suis IbpA heat-shock chaperone is not required for virulence or for expression of the VirB type IV secretion system VirB8 protein.". (2014): http://europepmc.org/abstract/med/24517122.
    10.1111/lam.12231
  207. Bland C; Hartmann EM; Christie-Oleza JA; Fernandez B; Armengaud J; C. Bland; E. M. Hartmann; et al. "N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography.". Molecular & Cellular Proteomics 13 5 (2014): 1369-1381. http://europepmc.org/abstract/med/24536027.
    10.1074/mcp.O113.032854
  208. de Groot A; Roche D; Fernandez B; Ludanyi M; Cruveiller S; Pignol D; Vallenet D; Armengaud J; Blanchard L. "RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti.". (2014): http://europepmc.org/abstract/med/24723731.
    10.1093/gbe/evu069
  209. Bland C; Bellanger L; Armengaud J. "Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.". (2014): http://europepmc.org/abstract/med/24313271.
    10.1021/pr400774z
  210. Rubiano-Labrador C; Bland C; Miotello G; Guérin P; Pible O; Baena S; Armengaud J. "Proteogenomic insights into salt tolerance by a halotolerant alpha-proteobacterium isolated from an Andean saline spring.". (2014): http://europepmc.org/abstract/med/23727365.
    10.1016/j.jprot.2013.05.020
  211. Hartmann EM; Armengaud J. "Shotgun proteomics suggests involvement of additional enzymes in dioxin degradation by Sphingomonas wittichii RW1.". (2014): http://europepmc.org/abstract/med/24118890.
    10.1111/1462-2920.12264
  212. Hartmann EM; Allain F; Gaillard JC; Pible O; Armengaud J. "Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria.". (2014): http://europepmc.org/abstract/med/25172287.
    10.1007/978-1-4939-1261-2_16
  213. Pereira S; Malard V; Ravanat JL; Davin AH; Armengaud J; Foray N; Adam-Guillermin C. "Low doses of gamma-irradiation induce an early bystander effect in zebrafish cells which is sufficient to radioprotect cells.". (2014): http://europepmc.org/abstract/med/24667817.
    10.1371/journal.pone.0092974
  214. Durighello E; Christie-Oleza JA; Armengaud J. "Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395.". (2014): http://europepmc.org/abstract/med/24586966.
    10.1371/journal.pone.0089691
  215. Laouami S; Clair G; Armengaud J; Duport C. "Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579.". (2014): http://europepmc.org/abstract/med/25216269.
    10.1371/journal.pone.0107354
  216. Clair G; Lorphelin A; Armengaud J; Duport C. "OhrRA functions as a redox-responsive system controlling toxinogenesis in Bacillus cereus.". (2013): http://europepmc.org/abstract/med/24184231.
    10.1016/j.jprot.2013.10.024
  217. de la Tour CB; Passot FM; Toueille M; Mirabella B; Guérin P; Blanchard L; Servant P; et al. "Comparative proteomics reveals key proteins recruited at the nucleoid of Deinococcus after irradiation-induced DNA damage.". (2013): http://europepmc.org/abstract/med/24307635.
    10.1002/pmic.201300249
  218. Christie-Oleza JA; Miotello G; Armengaud J. "Proteogenomic definition of biomarkers for the large Roseobacter clade and application for a quick screening of new environmental isolates.". (2013): http://europepmc.org/abstract/med/24044462.
    10.1021/pr400554e
  219. Armengaud J; Hartmann EM; Bland C. "Proteogenomics for environmental microbiology.". (2013): http://europepmc.org/abstract/med/23636904.
    10.1002/pmic.201200576
  220. Suarez S; Ferroni A; Lotz A; Jolley KA; Guérin P; Leto J; Dauphin B; et al. "Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory.". (2013): http://europepmc.org/abstract/med/23916798.
    10.1016/j.mimet.2013.07.021
  221. Darolles C; Sage N; Armengaud J; Malard V. "In vitro assessment of cobalt oxide particle toxicity: identifying and circumventing interference.". (2013): http://europepmc.org/abstract/med/23624240.
    10.1016/j.tiv.2013.04.008
  222. Bahassou-Benamri R; Davin AH; Gaillard JC; Alonso B; Odorico M; Pible O; Armengaud J; Godon C. "Subcellular localization and interaction network of the mRNA decay activator Pat1 upon UV stress.". (2013): http://europepmc.org/abstract/med/23847025.
    10.1002/yea.2968
  223. Alonso B; Beraud C; Meguellati S; Chen SW; Pellequer JL; Armengaud J; Godon C. "Eukaryotic GPN-loop GTPases paralogs use a dimeric assembly reminiscent of archeal GPN.". (2013): http://europepmc.org/abstract/med/23324351.
    10.4161/cc.23367
  224. Armengaud J. "Microbiology and proteomics, getting the best of both worlds!". (2013): http://europepmc.org/abstract/med/22708953.
    10.1111/j.1462-2920.2012.02811.x
  225. Christie-Oleza JA; Piña-Villalonga JM; Guerin P; Miotello G; Bosch R; Nogales B; Armengaud J. "Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus.". (2013): http://europepmc.org/abstract/med/22712501.
    10.1111/j.1462-2920.2012.02812.x
  226. Peyrol J; Thizon C; Gaillard JC; Marchetti C; Armengaud J; Rollin-Genetet F. "Multiple phosphorylable sites in the Zaire Ebolavirus nucleoprotein evidenced by high resolution tandem mass spectrometry.". (2013): http://europepmc.org/abstract/med/23068963.
    10.1016/j.jviromet.2012.10.003
  227. Norais C; Servant P; Bouthier-de-la-Tour C; Coureux PD; Ithurbide S; Vannier F; Guerin PP; et al. "The Deinococcus radiodurans DR1245 protein, a DdrB partner homologous to YbjN proteins and reminiscent of type III secretion system chaperones.". (2013): http://europepmc.org/abstract/med/23441204.
    10.1371/journal.pone.0056558
  228. Dedieu A; Sahinovic E; Guérin P; Blanchard L; Fochesato S; Meunier B; de Groot A; Armengaud J. "Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation.". (2013): http://europepmc.org/abstract/med/23320389.
    10.1186/1477-5956-11-3
  229. Perche-Letuvée P; Kathirvelu V; Berggren G; Clemancey M; Latour JM; Maurel V; Douki T; et al. "4-Demethylwyosine synthase from Pyrococcus abyssi is a radical-S-adenosyl-L-methionine enzyme with an additional [4Fe-4S](+2) cluster that interacts with the pyruvate co-substrate.". Journal of Biological Chemistry 287 49 (2012): 41174-41185. http://europepmc.org/abstract/med/23043105.
    10.1074/jbc.M112.405019
  230. Suarez-Suarez LY; Brunet-Galmes I; Piña-Villalonga JM; Christie-Oleza JA; Peña A; Bennasar A; Armengaud J; Nogales B; Bosch R. "Draft genome sequence of Citreicella aestuarii strain 357, a member of the Roseobacter clade isolated without xenobiotic pressure from a petroleum-polluted beach.". (2012): http://europepmc.org/abstract/med/22965089.
    10.1128/JB.01261-12
  231. Armengaud J; Christie-Oleza JA; Clair G; Malard V; Duport C. "Exoproteomics: exploring the world around biological systems.". (2012): http://europepmc.org/abstract/med/23194272.
    10.1586/epr.12.52
  232. L. Y. Suarez-Suarez; I. Brunet-Galmes; J. M. Pina-Villalonga; J. A. Christie-Oleza; A. Pena; A. Bennasar; J. Armengaud; B. Nogales; R. Bosch. "Draft Genome Sequence of Citreicella aestuarii Strain 357, a Member of the Roseobacter Clade Isolated without Xenobiotic Pressure from a Petroleum-Polluted Beach". Journal of Bacteriology 194 19 (2012): 5464-5465. http://dx.doi.org/10.1128/jb.01261-12.
    10.1128/jb.01261-12
  233. Clair G; Armengaud J; Duport C. "Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus.". (2012): http://europepmc.org/abstract/med/22232490.
    10.1074/mcp.M111.013102
  234. Toueille M; Mirabella B; Guérin P; Bouthier de la Tour C; Boisnard S; Nguyen HH; Blanchard L; et al. "A comparative proteomic approach to better define Deinococcus nucleoid specificities.". (2012): http://europepmc.org/abstract/med/22446890.
    10.1016/j.jprot.2012.03.002
  235. Christie-Oleza JA; Piña-Villalonga JM; Bosch R; Nogales B; Armengaud J. "Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria.". (2012): http://europepmc.org/abstract/med/22122883.
    10.1074/mcp.M111.013110
  236. G. Clair; J. Armengaud; C. Duport. "Restricting Fermentative Potential by Proteome Remodeling: AN ADAPTIVE STRATEGY EVIDENCED IN BACILLUS CEREUS". Molecular & Cellular Proteomics 11 6 (2012): M111.013102-M111.013102. http://dx.doi.org/10.1074/mcp.m111.013102.
    10.1074/mcp.m111.013102
  237. Malard V; Chardan L; Roussi S; Darolles C; Sage N; Gaillard JC; Armengaud J. "Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics.". (2012): http://europepmc.org/abstract/med/22079246.
    10.1016/j.jprot.2011.10.025
  238. Christie-Oleza JA; Fernandez B; Nogales B; Bosch R; Armengaud J. "Proteomic insights into the lifestyle of an environmentally relevant marine bacterium.". (2012): http://europepmc.org/abstract/med/21776030.
    10.1038/ismej.2011.86
  239. Christie-Oleza JA; Miotello G; Armengaud J. "High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.". (2012): http://europepmc.org/abstract/med/22336032.
    10.1186/1471-2164-13-73
  240. J. A. Christie-Oleza; J. M. Pina-Villalonga; R. Bosch; B. Nogales; J. Armengaud. "Comparative Proteogenomics of Twelve Roseobacter Exoproteomes Reveals Different Adaptive Strategies Among These Marine Bacteria". Molecular & Cellular Proteomics 11 2 (2011): M111.013110-M111.013110. http://dx.doi.org/10.1074/mcp.m111.013110.
    10.1074/mcp.m111.013110
  241. Béatrice Alonso; Guylaine Chaussinand; Jean Armengaud; Christian Godon; Alonso B; Chaussinand G; Armengaud J; Godon C. "A role for GPN-loop GTPase yGPN1 in sister chromatid cohesion". Cell Cycle 10 11 (2011): 1828-1837. http://dx.doi.org/10.4161/cc.10.11.15763.
    10.4161/cc.10.11.15763
  242. Dedieu A; Gaillard JC; Pourcher T; Darrouzet E; Armengaud J. "Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy.". (2011): http://europepmc.org/abstract/med/20978121.
    10.1074/jbc.M110.159483
  243. Ozdemir V; Armengaud J; Dubé L; Aziz RK; Knoppers BM. "Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value.". (2010): http://europepmc.org/abstract/med/21399751.
    10.2174/187569210793368230
  244. A. Dedieu; J.-C. Gaillard; T. Pourcher; E. Darrouzet; J. Armengaud. "Revisiting Iodination Sites in Thyroglobulin with an Organ-oriented Shotgun Strategy". Journal of Biological Chemistry 286 1 (2010): 259-269. http://dx.doi.org/10.1074/jbc.m110.159483.
    10.1074/jbc.m110.159483
  245. de Crécy-Lagard V; Brochier-Armanet C; Urbonavicius J; Fernandez B; Phillips G; Lyons B; Noma A; et al. "Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea.". (2010): http://europepmc.org/abstract/med/20382657.
    10.1093/molbev/msq096
  246. V. Malard; N. Sage; P. Gueraud; W. Naudin; M. Floriani; J. Armengaud; E. Quemeneur. "Particulate cobalt and soluble cobalt: Same metal but different toxicities as assessed by cellular biology and innovative proteomic approaches". Toxicology Letters 196 (2010): S305-S305. http://dx.doi.org/10.1016/j.toxlet.2010.03.964.
    10.1016/j.toxlet.2010.03.964
  247. Clair G; Roussi S; Armengaud J; Duport C. "Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions.". (2010): http://europepmc.org/abstract/med/20368289.
    10.1074/mcp.M000027-MCP201
  248. G. Clair; S. Roussi; J. Armengaud; C. Duport. "Expanding the Known Repertoire of Virulence Factors Produced by Bacillus cereus through Early Secretome Profiling in Three Redox Conditions". Molecular & Cellular Proteomics 9 7 (2010): 1486-1498. http://dx.doi.org/10.1074/mcp.m000027-mcp201.
    10.1074/mcp.m000027-mcp201
  249. Baudet M; Ortet P; Gaillard JC; Fernandez B; Guérin P; Enjalbal C; Subra G; et al. "Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.". (2010): http://europepmc.org/abstract/med/19875382.
    10.1074/mcp.M900359-MCP200
  250. Armengaud J. "Proteogenomics and systems biology: quest for the ultimate missing parts.". (2010): http://europepmc.org/abstract/med/20121477.
    10.1586/epr.09.104
  251. Jean Armengaud. "Systems Biology and Synthetic Biology: Understanding Biological Complexity on the Critical Path to Personalized Medicine". CPPM 8 4 (2010): 257-267. http://dx.doi.org/10.2174/187569210793368186.
    10.2174/187569210793368186
  252. Christie-Oleza JA; Armengaud J. "In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study.". (2010): http://europepmc.org/abstract/med/20948905.
    10.3390/md8082223
  253. M. Baudet; P. Ortet; J.-C. Gaillard; B. Fernandez; P. Guerin; C. Enjalbal; G. Subra; et al. "Proteomics-based Refinement of Deinococcus deserti Genome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons". Molecular & Cellular Proteomics 9 2 (2009): 415-426. http://dx.doi.org/10.1074/mcp.m900359-mcp200.
    10.1074/mcp.m900359-mcp200
  254. Véronique Malard; Jean-Charles Gaillard; Frédéric Bérenguer; Nicole Sage; Jean Armengaud; Eric Quéméneur. "Novel quantitative proteomic strategies for assessing metals nephrotoxicity in rats". Toxicology Letters 189 (2009): S95-S95. http://dx.doi.org/10.1016/j.toxlet.2009.06.286.
    10.1016/j.toxlet.2009.06.286
  255. Esbelin J; Armengaud J; Zigha A; Duport C. "ResDE-dependent regulation of enterotoxin gene expression in Bacillus cereus: evidence for multiple modes of binding for ResD and interaction with Fnr.". (2009): http://europepmc.org/abstract/med/19395489.
    10.1128/JB.00321-09
  256. Armengaud J. "A perfect genome annotation is within reach with the proteomics and genomics alliance.". (2009): http://europepmc.org/abstract/med/19410500.
    10.1016/j.mib.2009.03.005
  257. J. Esbelin; J. Armengaud; A. Zigha; C. Duport. "ResDE-Dependent Regulation of Enterotoxin Gene Expression in Bacillus cereus: Evidence for Multiple Modes of Binding for ResD and Interaction with Fnr". Journal of Bacteriology (2009):
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  258. de Groot A; Dulermo R; Ortet P; Blanchard L; Guérin P; Fernandez B; Vacherie B; et al. "Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti.". (2009): http://europepmc.org/abstract/med/19370165.
    10.1371/journal.pgen.1000434
  259. Zivanovic Y; Armengaud J; Lagorce A; Leplat C; Guérin P; Dutertre M; Anthouard V; et al. "Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea.". (2009): http://europepmc.org/abstract/med/19558674.
    10.1186/gb-2009-10-6-r70
  260. Esbelin J; Jouanneau Y; Armengaud J; Duport C. "ApoFnr binds as a monomer to promoters regulating the expression of enterotoxin genes of Bacillus cereus.". (2008): http://europepmc.org/abstract/med/18424517.
    10.1128/JB.00336-08
  261. J. Esbelin; Y. Jouanneau; J. Armengaud; C. Duport. "ApoFnr Binds as a Monomer to Promoters Regulating the Expression of Enterotoxin Genes of Bacillus cereus". Journal of Bacteriology 190 12 (2008): 4242-4251. http://dx.doi.org/10.1128/jb.00336-08.
    10.1128/jb.00336-08
  262. Gabant G; Augier J; Armengaud J. "Assessment of solvent residues accessibility using three Sulfo-NHS-biotin reagents in parallel: application to footprint changes of a methyltransferase upon binding its substrate.". (2008): http://europepmc.org/abstract/med/17968972.
    10.1002/jms.1328
  263. Habauzit D; Armengaud J; Roig B; Chopineau J. "Determination of estrogen presence in water by SPR using estrogen receptor dimerization.". (2008): http://europepmc.org/abstract/med/18026938.
    10.1007/s00216-007-1725-x
  264. Gras S; Chaumont V; Fernandez B; Carpentier P; Charrier-Savournin F; Schmitt S; Pineau C; et al. "Structural insights into a new homodimeric self-activated GTPase family.". (2007): http://europepmc.org/abstract/med/17468740.
    10.1038/sj.embor.7400958
  265. Sainz G; Jakoncic J; Sieker LC; Stojanoff V; Sanishvili N; Asso M; Bertrand P; Armengaud J; Jouanneau Y. "Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction.". (2006): http://europepmc.org/abstract/med/16402206.
    10.1007/s00775-005-0069-2
  266. Urbonavicius J; Armengaud J; Grosjean H. "Identity elements required for enzymatic formation of N2,N2-dimethylguanosine from N2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA.". (2006): http://europepmc.org/abstract/med/16434050.
    10.1016/j.jmb.2005.12.087
  267. Gabant G; Auxilien S; Tuszynska I; Locard M; Gajda MJ; Chaussinand G; Fernandez B; et al. "THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain.". (2006): http://europepmc.org/abstract/med/16687654.
    10.1093/nar/gkl145
  268. S. Gras; B. Fernandez; V. Chaumont; P. Carpentier; J. Armengaud; D. Housset. "Structure of a PACE protein: PAB0955, first member of new GTPase family". Acta Crystallogr Sect A Found Crystallogr 61 a1 (2005): c498-c498. http://dx.doi.org/10.1107/s0108767305079468.
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  269. Gras S; Fernandez B; Chaumont V; Carpentier P; Armengaud J; Housset D; Stéphanie Gras; et al. "Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product.". Acta Cryst Sect F Struct Biol Cryst Commun 61 2 (2005): 208-211. http://europepmc.org/abstract/med/16510996.
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  270. Armengaud J; Dedieu A; Solques O; Pellequer JL; Quemeneur E. "Deciphering structure and topology of conserved COG2042 orphan proteins.". (2005): http://europepmc.org/abstract/med/15701177.
    10.1186/1472-6807-5-3
  271. Armengaud, J; Chaussinand, G; Fernandez, B. "PAB1725 is not what we thought: a contribution from a << post-genomic biochemistry >> program". The FEBS Journal (2005): https://publons.com/wos-op/publon/56932108/.
  272. Armengaud J; Urbonavicius J; Fernandez B; Chaussinand G; Bujnicki JM; Grosjean H. "N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota.". (2004): http://europepmc.org/abstract/med/15210688.
    10.1074/jbc.M403845200
  273. S. Gras; P. Carpentier; B. Fernandez; J. Armengaud; P. Forterre; D. Housset. "Structure of PACE12, an archaebacterial protein with GTPase activity and of unknown biological function". Acta Crystallogr Sect A Found Crystallogr 60 a1 (2004): s127-s127. http://dx.doi.org/10.1107/s0108767304097491.
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  274. J. Armengaud; J. Urbonavicius; B. Fernandez; G. Chaussinand; J. M. Bujnicki; H. Grosjean. "N2-Methylation of Guanosine at Position 10 in tRNA Is Catalyzed by a THUMP Domain-containing, S-Adenosylmethionine-dependent Methyltransferase, Conserved in Archaea and Eukaryota". Journal of Biological Chemistry 279 35 (2004): 37142-37152. http://dx.doi.org/10.1074/jbc.m403845200.
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  275. Armengaud J; Fernandez B; Chaumont V; Rollin-Genetet F; Finet S; Marchetti C; Myllykallio H; et al. "Identification, purification, and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (coenzyme A biosynthetic pathway) in the hyperthermophilic archaeon Pyrococcus abyssi.". (2003): http://europepmc.org/abstract/med/12756245.
    10.1074/jbc.M301891200
  276. J. Armengaud; B. Fernandez; V. Chaumont; F. Rollin-Genetet; S. Finet; C. Marchetti; H. Myllykallio; et al. "Identification, Purification, and Characterization of an Eukaryotic-like Phosphopantetheine Adenylyltransferase (Coenzyme A Biosynthetic Pathway) in the Hyperthermophilic Archaeon Pyrococcus abyssi". Journal of Biological Chemistry 278 33 (2003): 31078-31087. http://dx.doi.org/10.1074/jbc.m301891200.
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  277. Tropel D; Meyer C; Armengaud J; Jouanneau Y. "Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31.". (2002): http://europepmc.org/abstract/med/11889489.
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  278. Ugrinova I; Pasheva EA; Armengaud J; Pashev IG. "In vivo acetylation of HMG1 protein enhances its binding affinity to distorted DNA structures.". (2001): http://europepmc.org/abstract/med/11724579.
    10.1021/bi0113364
  279. T. Potrawfke; J. Armengaud; R.-M. Wittich. "Chlorocatechols Substituted at Positions 4 and 5 Are Substrates of the Broad-Spectrum Chlorocatechol 1,2-Dioxygenase of Pseudomonas chlororaphis RW71". Journal of Bacteriology 183 3 (2001): 997-1011. http://dx.doi.org/10.1128/jb.183.3.997-1011.2001.
    10.1128/jb.183.3.997-1011.2001
  280. Jean Armengaud; Germaine Sainz; Yves Jouanneau; Larry C. Sieker; Armengaud J; Sainz G; Jouanneau Y; Sieker LC. "Crystallization and preliminary X-ray diffraction analysis of a [2Fe–2S] ferredoxin (FdVI) from Rhodobacter capsulatus". Acta Crystallogr D Biol Cryst 57 2 (2001): 301-303. http://dx.doi.org/10.1107/s0907444900017832.
    10.1107/s0907444900017832
  281. Potrawfke T; Armengaud J; Wittich RM. "Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71.". (2001): http://europepmc.org/abstract/med/11208799.
    10.1128/JB.183.3.997-1011.2001
  282. Vuilleumier, S; Ucurum, Z; Oelhafen, S; Leisinger, T; Armengaud, J; Wittich, RM; Timmis, KN. "The glutathione S-transferase OrfE3 of the dioxin-degrading bacterium sphingomonas sp RW1 displays maleylpyruvate isomerase activity". Chemico-Biological Interactions (2001): https://publons.com/wos-op/publon/13568882/.
  283. N. Hugo; C. Meyer; J. Armengaud; J. Gaillard; K. N. Timmis; Y. Jouanneau. "Characterization of Three XylT-Like [2Fe-2S] Ferredoxins Associated with Catabolism of Cresols or Naphthalene: Evidence for Their Involvement in Catechol Dioxygenase Reactivation". Journal of Bacteriology 182 19 (2000): 5580-5585. http://dx.doi.org/10.1128/jb.182.19.5580-5585.2000.
    10.1128/jb.182.19.5580-5585.2000
  284. Hugo N; Meyer C; Armengaud J; Gaillard J; Timmis KN; Jouanneau Y. "Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: evidence for their involvement in catechol dioxygenase reactivation.". (2000): http://europepmc.org/abstract/med/10986264.
    10.1128/JB.182.19.5580-5585.2000
  285. J. Armengaud; J. Gaillard; K. N. Timmis. "A Second [2Fe-2S] Ferredoxin from Sphingomonas sp. Strain RW1 Can Function as an Electron Donor for the Dioxin Dioxygenase". Journal of Bacteriology 182 8 (2000): 2238-2244. http://dx.doi.org/10.1128/jb.182.8.2238-2244.2000.
    10.1128/jb.182.8.2238-2244.2000
  286. Armengaud J; Gaillard J; Timmis KN. "A second [2Fe-2S] ferredoxin from Sphingomonas sp. Strain RW1 can function as an electron donor for the dioxin dioxygenase.". (2000): http://europepmc.org/abstract/med/10735867.
    10.1128/JB.182.8.2238-2244.2000
  287. Armengaud J; Timmis KN; Wittich RM. "A functional 4-hydroxysalicylate/hydroxyquinol degradative pathway gene cluster is linked to the initial dibenzo-p-dioxin pathway genes in Sphingomonas sp. strain RW1.". (1999): http://europepmc.org/abstract/med/10348858.
  288. Armengaud, J; Timmis, KN; Wittich, RM. "A functional 4-hydroxysalicylate/hydroxyquinol degradative pathway gene cluster is linked to the initial dibenzo-p-dioxin pathway genes in Sphingomonas sp strain RW1". Journal of Bacteriology (1999): https://publons.com/wos-op/publon/56932125/.
    10.1128/JB.181.11.3452-3461.1999
  289. Armengaud J; Happe B; Timmis KN. "Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: catabolic genes dispersed on the genome.". (1998): http://europepmc.org/abstract/med/9683494.
  290. Armengaud J; Timmis KN. "The reductase RedA2 of the multi-component dioxin dioxygenase system of Sphingomonas sp. RW1 is related to class-I cytochrome P450-type reductases.". (1998): http://europepmc.org/abstract/med/9654094.
    10.1046/j.1432-1327.1998.2530437.x
  291. Hugo N; Armengaud J; Gaillard J; Timmis KN; Jouanneau Y. "A novel -2Fe-2S- ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase.". (1998): http://europepmc.org/abstract/med/9545294.
    10.1074/jbc.273.16.9622
  292. Galinier, M; Boveda, S; Alhabaj, S; Armengaud, J; Cabrol, P; Dongay, B; Massabuau, P; Fauvel, JM; Bounhoure, JP. "Sudden death and chronic cardiac failure". Archives des Maladies du Coeur et des Vaisseaux (1998): https://publons.com/wos-op/publon/56932106/.
  293. Armengaud, J; Happe, B; Timmis, KN. "Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: Catabolic genes dispersed on the genome". Journal of Bacteriology (1998): https://publons.com/wos-op/publon/47348209/.
    10.1128/JB.180.15.3954-3966.1998
  294. Armengaud J; Timmis KN. "Molecular characterization of Fdx1, a putidaredoxin-type [2Fe-2S] ferredoxin able to transfer electrons to the dioxin dioxygenase of Sphingomonas sp. RW1.". (1997): http://europepmc.org/abstract/med/9288905.
    10.1111/j.1432-1033.1997.00833.x
  295. Armengaud J; Meyer C; Jouanneau Y. "A [2Fe-2S] ferredoxin (FdVI) is essential for growth of the photosynthetic bacterium Rhodobacter capsulatus.". (1997): http://europepmc.org/abstract/med/9150228.
  296. Armengaud, J; Meyer, C; Jouanneau, Y. "A [2Fe-2S] ferredoxin (FdVI) is essential for growth of the photosynthetic bacterium Rhodobacter capsulatus". Journal of Bacteriology (1997): https://publons.com/wos-op/publon/56932114/.
    10.1128/JB.179.10.3304-3309.1997
  297. Armengaud, J; Timmis, KN. "Biodegradation of dibenzo-p-dioxin and dibenzofuran by bacteria". Journal of Microbiology (1997): https://publons.com/wos-op/publon/56932115/.
  298. Armengaud J; Gaillard J; Forest E; Jouanneau Y. "Characterization of a 2[4Fe-4S] ferredoxin obtained by chemical insertion of the Fe-S clusters into the apoferredoxin II from Rhodobacter capsulatus.". (1995): http://europepmc.org/abstract/med/7635151.
    10.1111/j.1432-1033.1995.tb20712.x
  299. Armengaud J; Jouanneau Y. "Overexpression in Escherichia coli of the fdxA gene encoding Rhodobacter capsulatus ferredoxin II.". (1995): http://europepmc.org/abstract/med/7606166.
    10.1006/prep.1995.1022
  300. Jouanneau, Y; Hugo, N; Armengaud, J; Naud, I; Meyer, C; Willison, JC. "Electron transport to nitrogenase in the photosynthetic bacterium Rhodobacter capsulatus". Photosynthesis: from Light to Biosphere, Vol Ii (1995): https://publons.com/wos-op/publon/56932107/.
  301. Armengaud J; Meyer C; Jouanneau Y. "Recombinant expression of the fdxD gene of Rhodobacter capsulatus and characterization of its product, a [2Fe-2S] ferredoxin.". (1994): http://europepmc.org/abstract/med/8002946.
  302. ARMENGAUD, J; MEYER, C; JOUANNEAU, Y. "RECOMBINANT EXPRESSION OF THE FDXD GENE OF RHODOBACTER-CAPSULATUS AND CHARACTERIZATION OF ITS PRODUCT, A [2FE-2S] FERREDOXIN". Biochemical Journal (1994): https://publons.com/wos-op/publon/56932119/.
    10.1042/BJ3000413
  303. Armengaud J; Jouanneau Y. "Addition of a class IIS enzyme site in the mutagenic primer to improve two-step PCR-based targeted mutagenesis.". (1993): http://europepmc.org/abstract/med/8415019.
    10.1093/nar/21.18.4424
  304. Armengaud J; de Nuova Perez L; Lemay P; Masson JM. "Production of a full length Tat protein in E. coli and its purification.". (1991): http://europepmc.org/abstract/med/2026253.
    10.1016/0014-5793(91)80467-H
Capítulo de livro
  1. Laidson Paes Gomes; Catarina Gouveia e Silva; Jean-Charles Gaillard; Jean Armengaud; Ana Varela Coelho. "Characterization of Soluble Cell-Free Coelomic Fluid Proteome from the Starfish Marthasterias glacialis". 2022.
    10.1007/978-1-0716-2172-1_31
Pré-impressão
  1. Lise Molinelli; Elodie Drula; Jean-Charles Gaillard; David Navarro; Jean Armengaud; Jean-Guy Berrin; Thierry Tron; Lionel Tarrago. "Methionine oxidation of Carbohydrate-Active enZymes during white-rot wood decay". 2023. https://doi.org/10.1101/2023.10.24.563746.
    10.1101/2023.10.24.563746
  2. Jennifer LAURENT; Iwan Le Berre; Jean Armengaud; Senthilkumar Kailasam; Jérôme Couteau; Matthieu Waeles; Stéphane Le Floch; Jean Laroche; Vianney Pichereau. "Integration of Environmental Signatures and -Omics Approaches on the European Flounder to Assess the Health Status of Small-Size Estuarine Systems". 2023. http://dx.doi.org/10.2139/ssrn.4340999.
    10.2139/ssrn.4340999
  3. Maxime Lepretre; Arnaud Chaumot; Rayan Aboud; Nicolas Delorme; Anabelle Espeyte; Arnaud Salvador; Sophie Ayciriex; et al. "Dynamic Multiple Reaction Monitoring of Amphipod Gammarus Fossarum Caeca Expands Molecular Information for Understanding the Impact of Contaminants". 2023. http://dx.doi.org/10.2139/ssrn.4379443.
    10.2139/ssrn.4379443
  4. Clement Baratange; Hugo Baali; Veronique Gaillet; Isabelle Bonnard; Laurence Delahaut; Jean-Charles Gaillard; Dominique Grandjean; et al. "Bioaccumulation and Molecular Effects of Carbamazepine and Methylmercury Co-Exposure in Males of Dreissena Polymorpha". 2023. http://dx.doi.org/10.2139/ssrn.4410854.
    10.2139/ssrn.4410854
  5. Léa Broca-Brisson; Rania Harati; Clémence Disdier; Orsolya Mozner; Romane Gaston-Breton; Auriane Maïza; Narciso Costa; et al. "Deciphering Neuronal Deficit and Protein Profile Changes in Human Brain Organoids from Patients with Creatine Transporter Deficiency". 2023. http://dx.doi.org/10.1101/2023.06.01.543271.
    10.1101/2023.06.01.543271
  6. Aloise Mabondzo; Rania Harati; Léa Broca-Brisson; Anne-Cécile Guyot; Narciso Costa; Francesco Cacciante; Elena Putignano; et al. "Dodecyl Creatine Ester Improves Cognitive Function and Identifies Drivers of Creatine Deficiency". 2022. http://dx.doi.org/10.1101/2022.11.03.514982.
    10.1101/2022.11.03.514982
  7. Yeseul Park; Zohar Eyal; Péter Pekker; Daniel M. Chevrier; Christopher T. Lefèvre; Pascal Arnoux; Jean Armengaud; et al. "Periplasmic bacterial biomineralization of copper sulfide nanoparticles". 2022. http://dx.doi.org/10.26434/chemrxiv-2022-9q05h.
    10.26434/chemrxiv-2022-9q05h
  8. Daniel Sobral; Ana F Fernandes; Atlas Sardoo; Miguel Bernardes; Patrícia Pinto; Helena Santos; João Lagoas-Gomes; et al. "MULTI-OMICS TEMPORAL PROFILING OF AXIAL SPONDYLOARTHRITIS PATIENTS REVEALS AN ASSOCIATION OF THERAPEUTIC RESPONSE TO ADALIMUMAB WITH DISEASE ACTIVITY AND INNATE / ADAPTIVE IMMUNITY". 2022. http://dx.doi.org/10.1101/2022.08.02.22278314.
    10.1101/2022.08.02.22278314
  9. Duarte Gouveia; Guylaine Miotello; Fabrice Gallais; Jean-Charles Gaillard; Stéphanie Debroas; Laurent Bellanger; Jean-Philippe Lavigne; et al. "Proteotyping SARS-CoV-2 virus from nasopharyngeal swabs: a proof-of-concept focused on a 3 min mass spectrometry window". 2020. http://dx.doi.org/10.1101/2020.06.19.161000.
    10.1101/2020.06.19.161000

Outros

Conjunto de dados
  1. Jean, Armengaud. Proteogenomics annotation of Thermococcus gammatolerans.
Outra produção
  1. Taxonomical and functional changes in COVID-19 faecal microbiome are related to SARS-CoV-2 faecal load. 2021. Jean Armengaud; Lucia Grenga; Olivier Pible; Guylaine Miotello; Karen Culotta; Sylvie Ruat; Marie-Anne Roncato; et al. https://doi.org/10.21203/rs.3.rs-414136/v1.
    10.21203/rs.3.rs-414136/v1
  2. Critical Assessment of Metaproteome Investigation (CAMPI): a Multi-Lab Comparison of Established Workflows. 2021. Tim Van Den Bossche; Benoit J. Kunath; Kay Schallert; Stephanie S. Schäpe; Paul E. Abraham; Jean Armengaud; Magnus Ø. Arntzen; et al. https://doi.org/10.1101/2021.03.05.433915.
    10.1101/2021.03.05.433915
  3. Shotgun proteomics of SARS-CoV-2 infected cells and its application to the optimisation of whole viral particle antigen production for vaccines. 2020. Grenga L; Gallais F; Pible O; Gaillard J; Gouveia D; Batina H; Bazaline N; et al. http://europepmc.org/abstract/PPR/PPR152259.
    10.1101/2020.04.17.046193
  4. The Rhodobacter sphaeroides methionine sulfoxide reductase MsrP can reduce R- and S-diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates. 2018. Lionel Tarrago; Sandrine Grosse; Marina I. Siponen; David Lemaire; Béatrice Alonso; Guylaine Miotello; Jean Armengaud; et al. https://doi.org/10.1101/243626.
    10.1101/243626
  5. Contributors. 2015. Jean-Claude Amiard; Rachid Amara; Claude Amiard-Triquet; Jean Armengaud; M.J. Bebianno; Brigitte Berthet; Angel Borja; et al. http://dx.doi.org/10.1016/b978-0-12-800949-9.01002-0.
    10.1016/b978-0-12-800949-9.01002-0
  6. Gammarids as Reference Species for Freshwater Monitoring. 2015. Arnaud Chaumot; Olivier Geffard; Jean Armengaud; Lorraine Maltby. http://dx.doi.org/10.1016/b978-0-12-800949-9.00011-5.
    10.1016/b978-0-12-800949-9.00011-5
  7. Proteogenomics for the Enhanced Discovery of Bacterial Biomarkers. 2014. Erica M. Hartmann; Jean Armengaud. http://dx.doi.org/10.1007/978-94-017-9238-7_11.
    10.1007/978-94-017-9238-7_11
  8. Crystal Structure of DR_1245 from Deinococcus radiodurans. 2013. C. Norais; P. Servant; C. Bouthier-de-la-Tour; P.D. Coureux; S. Ithurbide; F. Vannier; P. Guerin; et al. http://dx.doi.org/10.2210/pdb4h5b/pdb.
    10.2210/pdb4h5b/pdb
  9. PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi (after GTP hydrolysis). 2007. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb2oxr/pdb.
    10.2210/pdb2oxr/pdb
  10. PAB0955 crystal structure : a GTPase in GTP-gamma-S bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yr7/pdb.
    10.2210/pdb1yr7/pdb
  11. PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yr6/pdb.
    10.2210/pdb1yr6/pdb
  12. PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yr9/pdb.
    10.2210/pdb1yr9/pdb
  13. PAB0955 crystal structure : a GTPase in GTP bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yr8/pdb.
    10.2210/pdb1yr8/pdb
  14. PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yrb/pdb.
    10.2210/pdb1yrb/pdb
  15. PAB0955 crystal structure : a GTPase in GDP bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yra/pdb.
    10.2210/pdb1yra/pdb
  16. Ferredoxin-Mediated Reactivation of Catechol Dioxygenase Improves Aromatic Ring Cleavage in Pseudomonads. 1999. Y. Jouanneau; J. Armengaud; N. Hugo; C. Meyer; K. N. Timmis. http://dx.doi.org/10.1007/978-1-4615-4749-5_12.
    10.1007/978-1-4615-4749-5_12
  17. Molecular Genetics of the Degradation of Dioxins by Bacteria. 1998. Jean Armengaud; Kenneth N. Timmis. http://dx.doi.org/10.1007/978-3-662-06068-1_4.
    10.1007/978-3-662-06068-1_4
  18. Electron Transport to Nitrogenase in the Photosynthetic Bacterium Rhodobacter Capsulatus. 1995. Y. Jouanneau; N. Hugo; J. Armengaud; I. Naud; C. Meyer; J. C. Willison. http://dx.doi.org/10.1007/978-94-009-0173-5_417.
    10.1007/978-94-009-0173-5_417