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Armengaud Jean. Published 212 articles in journals, including numerous reviews. Works in the area(s) of Biological Sciences with emphasis on omics and multi-omics approaches. In his curriculum Ciência Vitae the most frequent terms in the context of scientific, technological and artistic-cultural output are: proteomics; proteogenomics; metaproteomics; non-model organisms. Expert in proteogenomics, the alliance of genomics and proteomics for the characterization of non-model organisms, as well as in mass spectrometry for the identification and characterization of pathogens, and the definition of biomarkers for medical and environmental purposes. He manages a mass spectrometry research unit located near Avignon in France. His research team develops new methodologies for the study of microbiota and their clinical and environmental applications.
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Identificação

Identificação pessoal

Nome completo
Armengaud Jean

Nomes de citação

  • Jean, Armengaud

Identificadores de autor

Ciência ID
A913-BA47-5664
ORCID iD
0000-0003-1589-445X

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Biologia Molecular

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Francês (Idioma materno)
Inglês Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2)
Espanhol; Castelhano Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2)
Formação
Grau Classificação
1991/10/01 - 1994/10/08
Concluído
 Biology (Doctorat)
Université Grenoble Alpes, França
Percurso profissional

Ciência

2000/12/20 - Atual Investigador principal (carreira) (Investigação)
Commissariat a l'energie atomique et aux energies alternatives Centre de Saclay, França
Projetos

Bolsa

Designação Financiadores
2017 - 2021/12/31 Phylopeptidomics
ANR-17-CE18-0023
Investigador responsável
Agence nationale de la recherche
Produções

Publicações

Artigo em revista
  1. Lucia Grenga; Jean Armengaud. "Proteomics in the COVID-19 Battlefield: First Semester Check-Up". PROTEOMICS (2021): 2000198-2000198. https://doi.org/10.1002/pmic.202000198.
    10.1002/pmic.202000198
  2. Jean, Armengaud. "Author Correction: Roadmap for naming uncultivated Archaea and Bacteria.". Nature microbiology (2021): https://doi.org/10.1038/s41564-020-00827-2.
    10.1038/s41564-020-00827-2
  3. Jean, Armengaud. "Ionizing-radiation-resistant Kocuria rhizophila PT10 isolated from the Tunisian Sahara xerophyte Panicum turgidum: Polyphasic characterization and proteogenomic arsenal.". Genomics (2020): https://doi.org/10.1016/j.ygeno.2020.11.029.
    10.1016/j.ygeno.2020.11.029
  4. Jean, Armengaud. "Shotgun proteomics analysis of SARS-CoV-2-infected cells and how it can optimize whole viral particle antigen production for vaccines.". Emerging microbes & infections (2020): https://europepmc.org/articles/PMC7473198.
    10.1080/22221751.2020.1791737
  5. Olivier Pible; François Allain; Virginie Jouffret; Karen Culotta; Guylaine Miotello; Jean Armengaud. "Estimating relative biomasses of organisms in microbiota using “phylopeptidomics”". Microbiome (2020): https://doi.org/10.1186/s40168-020-00797-x.
    10.1186/s40168-020-00797-x
  6. Pauline C. M. Petit; Olivier Pible; Valérie Van Eesbeeck; Claude Alban; Gérard Steinmetz; Mohamed Mysara; Pieter Monsieurs; Jean Armengaud; Corinne Rivasseau. "Direct Meta-Analyses Reveal Unexpected Microbial Life in the Highly Radioactive Water of an Operating Nuclear Reactor Core". Microorganisms 8 12 (2020): 1857-1857. https://doi.org/10.3390/microorganisms8121857.
    10.3390/microorganisms8121857
  7. Jean, Armengaud. "Intrinsic non-stomatal resilience to drought of the photosynthetic apparatus in Coffea spp. is strengthened by elevated air [CO2].". Tree physiology (2020): https://doi.org/10.1093/treephys/tpaa158.
    10.1093/treephys/tpaa158
  8. Jean, Armengaud. "Lysine-specific acetylated proteome from the archaeon Thermococcus gammatolerans reveals the presence of acetylated histones.". Journal of proteomics (2020): https://doi.org/10.1016/j.jprot.2020.104044.
    10.1016/j.jprot.2020.104044
  9. Karim Hayoun; Emilie Geersens; Cedric Laczny; Rashi Halder; Carmen Lázaro Sánchez; Abhijit Manna; Françoise Bringel; et al. "Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics". Microorganisms (2020): https://www.mdpi.com/2076-2607/8/12/1876.
    10.3390/microorganisms8121876
  10. Jean, Armengaud. "Bacillus cereus Decreases NHE and CLO Exotoxin Synthesis to Maintain Appropriate Proteome Dynamics During Growth at Low Temperature.". Toxins (2020): https://europepmc.org/articles/PMC7601483.
    10.3390/toxins12100645
  11. Karim Hayoun; Olivier Pible; Pauline Petit; François Allain; Virginie Jouffret; Karen Culotta; Corinne Rivasseau; Jean Armengaud; Béatrice Alpha-Bazin. "Proteotyping Environmental Microorganisms by Phylopeptidomics: Case Study Screening Water from a Radioactive Material Storage Pool". Microorganisms (2020): https://doi.org/10.3390/microorganisms8101525.
    10.3390/microorganisms8101525
  12. Jean, Armengaud. "Groundwater promotes emergence of asporogenic mutants of emetic Bacillus cereus.". Environmental microbiology (2020): https://doi.org/10.1111/1462-2920.15203.
    10.1111/1462-2920.15203
  13. Jean, Armengaud. "Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineral.". Environmental microbiology (2020): https://doi.org/10.1111/1462-2920.15159.
    10.1111/1462-2920.15159
  14. Jean, Armengaud. "Resilient and Sensitive Key Points of the Photosynthetic Machinery of Coffea spp. to the Single and Superimposed Exposure to Severe Drought and Heat Stresses.". Frontiers in plant science (2020): https://europepmc.org/articles/PMC7363965.
    10.3389/fpls.2020.01049
  15. Jean, Armengaud. "BMP-1 disrupts cell adhesion and enhances TGF-ß activation through cleavage of the matricellular protein thrombospondin-1.". Science signaling (2020): https://doi.org/10.1126/scisignal.aba3880.
    10.1126/scisignal.aba3880
  16. Jean, Armengaud. "The proteomics contribution to the counter-bioterrorism toolbox in the post-COVID-19 era.". Expert review of proteomics (2020): https://doi.org/10.1080/14789450.2020.1822745.
    10.1080/14789450.2020.1822745
  17. Jean, Armengaud. "Shortlisting SARS-CoV-2 Peptides for Targeted Studies from Experimental Data-Dependent Acquisition Tandem Mass Spectrometry Data.". Proteomics (2020): https://europepmc.org/articles/PMC7267140.
    10.1002/pmic.202000107
  18. Jean, Armengaud. "Roadmap for naming uncultivated Archaea and Bacteria.". Nature microbiology (2020): https://europepmc.org/articles/PMC7381421.
    10.1038/s41564-020-0733-x
  19. Jean, Armengaud. "Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host.". NPJ biofilms and microbiomes (2020): https://europepmc.org/articles/PMC7275042.
    10.1038/s41522-020-0133-2
  20. Jean, Armengaud. "The importance of naturally attenuated SARS-CoV-2in the fight against COVID-19.". Environmental microbiology (2020): https://europepmc.org/articles/PMC7267670.
    10.1111/1462-2920.15039
  21. Jean, Armengaud. "P084 Quick full-range determination of the composition of the cystic fibrosis lung microbiome from sputum by phylopeptidomics". Journal of Cystic Fibrosis 19 (2020): S79-S79. http://dx.doi.org/10.1016/s1569-1993(20)30419-7.
    10.1016/s1569-1993(20)30419-7
  22. Jean, Armengaud. "Bioactive Potential of Extracts of Labrenzia aggregata Strain USBA 371, a Halophilic Bacterium Isolated from a Terrestrial Source.". Molecules (Basel, Switzerland) (2020): https://europepmc.org/articles/PMC7321072.
    10.3390/molecules25112546
  23. Jean, Armengaud. "The COVID-19 MS Coalition-accelerating diagnostics, prognostics, and treatment.". Lancet (London, England) (2020): https://europepmc.org/articles/PMC7255197.
    10.1016/s0140-6736(20)31211-3
  24. Jean, Armengaud. "Proteogenomics-Guided Evaluation of RNA-Seq Assembly and Protein Database Construction for Emergent Model Organisms.". Proteomics (2020): https://doi.org/10.1002/pmic.201900261.
    10.1002/pmic.201900261
  25. Duarte Gouveia; Lucia Grenga; Olivier Pible; Jean Armengaud. "Quick microbial molecular phenotyping by differential shotgun proteomics". Environmental Microbiology (2020): https://doi.org/10.1111/1462-2920.14975.
    10.1111/1462-2920.14975
  26. Laurent Marichal; Géraldine Klein; Jean Armengaud; Yves Boulard; Stéphane Chédin; Jean Labarre; Serge Pin; Jean-Philippe Renault; Jean-Christophe Aude. "Protein Corona Composition of Silica Nanoparticles in Complex Media: Nanoparticle Size does not Matter". Nanomaterials 10 2 (2020): 240-240. https://doi.org/10.3390/nano10020240.
    10.3390/nano10020240
  27. Mathilde Biola-Clier; Jean-Charles Gaillard; Thierry Rabilloud; Jean Armengaud; Marie Carriere. "Titanium Dioxide Nanoparticles Alter the Cellular Phosphoproteome in A549 Cells". Nanomaterials 10 2 (2020): 185-185. https://doi.org/10.3390/nano10020185.
    10.3390/nano10020185
  28. Jean, Armengaud. "Post-production modifications of murine mesenchymal stem cell (mMSC) derived extracellular vesicles (EVs) and impact on their cellular interaction.". Biomaterials (2019): https://doi.org/10.1016/j.biomaterials.2019.119675.
    10.1016/j.biomaterials.2019.119675
  29. Davide Degli Esposti; Christine Almunia; Marc-Antoine Guery; Natacha Koenig; Jean Armengaud; Arnaud Chaumot; Olivier Geffard. "Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum". Scientific Reports (2019): https://doi.org/10.1038/s41598-019-44203-5.
    10.1038/s41598-019-44203-5
  30. Duarte Gouveia; Yannick Cogne; Jean-Charles Gaillard; Christine Almunia; Olivier Pible; Adeline François; Davide Degli-Esposti; et al. "Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild". Data in Brief 27 (2019): 104650-104650. https://doi.org/10.1016/j.dib.2019.104650.
    10.1016/j.dib.2019.104650
  31. Jean, Armengaud. "Complete Genome Sequences of Four Microbacterium Strains Isolated from Metal- and Radionuclide-Rich Soils.". Microbiology resource announcements (2019): https://europepmc.org/articles/PMC6797525.
    10.1128/mra.00846-19
  32. Jean, Armengaud. "Advanced Proteomics as a Powerful Tool for Studying Toxins of Human Bacterial Pathogens.". Toxins (2019): https://doi.org/10.3390/toxins11100576.
    10.3390/toxins11100576
  33. Jean, Armengaud. "Vaccines inducing immunity to Lassa virus glycoprotein and nucleoprotein protect macaques after a single shot.". Science translational medicine (2019): https://doi.org/10.1126/scitranslmed.aaw3163.
    10.1126/scitranslmed.aaw3163
  34. Jean, Armengaud. "De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups.". Scientific data (2019): http://europepmc.org/articles/PMC6764967.
    10.1038/s41597-019-0192-5
  35. Jean, Armengaud. "Proteases as secreted exoproteins in mycoplasmas from ruminant lungs and impact on surface exposed proteins.". Applied and Environmental Microbiology (2019): https://doi.org/10.1128/AEM.01439-19.
    10.1128/aem.01439-19
  36. Stefanie Elisabeth Heumüller; Maya Talantikite; Manon Napoli; Jean Armengaud; Matthias Mörgelin; Ursula Hartmann; Gerhard Sengle; et al. "C-terminal proteolysis of the collagen VI a3 chain by BMP-1 and proprotein convertase(s) releases endotrophin in fragments of different sizes". Journal of Biological Chemistry (2019): jbc.RA119.008641-jbc.RA119.008641. https://doi.org/10.1074/jbc.RA119.008641.
    10.1074/jbc.RA119.008641
  37. Jean, Armengaud. "Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry.". Frontiers in microbiology (2019): http://europepmc.org/articles/PMC6742703.
    10.3389/fmicb.2019.01985
  38. Jean, Armengaud. "Pathogen proteotyping: A rapidly developing application of mass spectrometry to address clinical concerns". Clinical Mass Spectrometry 14 (2019): 9-17. http://dx.doi.org/10.1016/j.clinms.2019.04.004.
    10.1016/j.clinms.2019.04.004
  39. Jean, Armengaud. "Microbiology and infectious diseases – A wealth of novelty for the clinical laboratory". Clinical Mass Spectrometry 14 (2019): 1-2. http://dx.doi.org/10.1016/j.clinms.2019.04.005.
    10.1016/j.clinms.2019.04.005
  40. Jean, Armengaud. "Coupling caging and proteomics on the European flounder (Platichthys flesus) to assess the estuarine water quality at micro scale.". The Science of the total environment (2019): https://doi.org/10.1016/j.scitotenv.2019.133760.
    10.1016/j.scitotenv.2019.133760
  41. Jean, Armengaud. "C-terminal proteolysis of the collagen VI a3 chain by BMP-1 and proprotein convertase(s) releases endotrophin in fragments of different sizes.". The Journal of biological chemistry (2019): https://doi.org/10.1074/jbc.RA119.008641.
    10.1074/jbc.ra119.008641
  42. Jean, Armengaud. "Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium.". Aquatic toxicology (Amsterdam, Netherlands) (2019): https://doi.org/10.1016/j.aquatox.2019.105244.
    10.1016/j.aquatox.2019.105244
  43. Jean, Armengaud. "Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation.". Research in microbiology (2019): https://doi.org/10.1016/j.resmic.2019.04.002.
    10.1016/j.resmic.2019.04.002
  44. Jean, Armengaud. "The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments.". Journal of proteomics (2019): https://doi.org/10.1016/j.jprot.2019.04.016.
    10.1016/j.jprot.2019.04.016
  45. Jean, Armengaud. "Omics of the early molecular dialogue between Frankia alni and Alnus glutinosa and the cellulase synton.". Environmental microbiology (2019): https://doi.org/10.1111/1462-2920.14606.
    10.1111/1462-2920.14606
  46. Lionel Tarrago; Sandrine Grosse; Marina I. Siponen; David Lemaire; Béatrice Alonso; Guylaine Miotello; Jean Armengaud; et al. "Rhodobacter sphaeroides methionine sulfoxide reductase P reduces R- and S-diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates". Biochemical Journal 475 23 (2018): 3779-3795. https://doi.org/10.1042/BCJ20180706.
    10.1042/BCJ20180706
  47. Jean, Armengaud. "Rhodobacter sphaeroides methionine sulfoxide reductase P reduces R- and S-diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates.". The Biochemical journal (2018): https://doi.org/10.1042/BCJ20180706.
    10.1042/bcj20180706
  48. Jean, Armengaud. "Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment.". Journal of proteomics (2018): https://doi.org/10.1016/j.jprot.2018.12.001.
    10.1016/j.jprot.2018.12.001
  49. Nicolas Gallois; Laurie Piette; Philippe Ortet; Mohamed Barakat; Justine Long; Catherine Berthomieu; Jean Armengaud; Virginie Chapon; Béatrice Alpha-Bazin. "Proteomics data for characterizing Microbacterium oleivorans A9, an uranium-tolerant actinobacterium isolated near the Chernobyl nuclear power plant". Data in Brief 21 (2018): 1125-1129. https://doi.org/10.1016/j.dib.2018.10.136.
    10.1016/j.dib.2018.10.136
  50. Jean, Armengaud. "Assessing the ratio of Bacillus spores and vegetative cells by shotgun proteomics.". Environmental science and pollution research international (2018): https://doi.org/10.1007/s11356-018-3341-z.
    10.1007/s11356-018-3341-z
  51. Jean, Armengaud. "Improving Quality Control of Contagious Caprine Pleuropneumonia Vaccine with Tandem Mass Spectrometry.". Proteomics (2018): https://doi.org/10.1002/pmic.201800088.
    10.1002/pmic.201800088
  52. Jean, Armengaud. "Biosafety of Mesoporous Silica Nanoparticles.". Biomimetics (Basel, Switzerland) (2018): https://europepmc.org/articles/PMC6352691.
    10.3390/biomimetics3030022
  53. Jean, Armengaud. "Digging Deeper Into the Pyriproxyfen-Response of the Amphipod Gammarus fossarum With a Next-Generation Ultra-High-Field Orbitrap Analyser: New Perspectives for Environmental Toxicoproteomics". Frontiers in Environmental Science 6 (2018): http://dx.doi.org/10.3389/fenvs.2018.00054.
    10.3389/fenvs.2018.00054
  54. Jean, Armengaud. "Importance of Post-translational Modifications in the Interaction of Proteins with Mineral Surfaces: The Case of Arginine Methylation and Silica surfaces.". Langmuir : the ACS journal of surfaces and colloids (2018): https://doi.org/10.1021/acs.langmuir.8b00752.
    10.1021/acs.langmuir.8b00752
  55. Jean, Armengaud. "Time-course proteomics dataset to monitor protein-bound methionine oxidation in Bacillus cereus ATCC 14579.". Data in brief (2018): https://europepmc.org/articles/PMC5996235.
    10.1016/j.dib.2018.03.030
  56. Jean, Armengaud. "Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum.". Scientific reports (2018): https://europepmc.org/articles/PMC5830573.
    10.1038/s41598-018-22235-7
  57. Jean, Armengaud. "The PEG-responding desiccome of the alder microsymbiont Frankia alni.". Scientific reports (2018): https://europepmc.org/articles/PMC5768760.
    10.1038/s41598-017-18839-0
  58. Jean, Armengaud. "Proteogenomic insights into uranium tolerance of a Chernobyl's Microbacterium bacterial isolate.". Journal of proteomics (2017): https://doi.org/10.1016/j.jprot.2017.11.021.
    10.1016/j.jprot.2017.11.021
  59. Jean, Armengaud. "Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods.". Environmental science & technology (2017): https://doi.org/10.1021/acs.est.7b03736.
    10.1021/acs.est.7b03736
  60. Jean, Armengaud. "In Vino Veritas: An Invitation for Ambitious, Collaborative Proteogenomics Campaigns on Plant and Animal Models.". Proteomics (2017): https://doi.org/10.1002/pmic.201700324.
    10.1002/pmic.201700324
  61. Jean, Armengaud. "Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1.". Proteomics (2017): https://doi.org/10.1002/pmic.201700211.
    10.1002/pmic.201700211
  62. Jean, Armengaud. "The species origin of the serum in the culture medium influences the in vitro toxicity of silica nanoparticles to HepG2 cells.". PloS one (2017): https://europepmc.org/articles/PMC5552166.
    10.1371/journal.pone.0182906
  63. Jean, Armengaud. "Methionine Residues in Exoproteins and Their Recycling by Methionine Sulfoxide Reductase AB Serve as an Antioxidant Strategy in Bacillus cereus.". Frontiers in microbiology (2017): https://europepmc.org/articles/PMC5526929.
    10.3389/fmicb.2017.01342
  64. Jean, Armengaud. "Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum: A physiological and ecotoxicological study.". Aquatic toxicology (Amsterdam, Netherlands) (2017): https://doi.org/10.1016/j.aquatox.2017.07.007.
    10.1016/j.aquatox.2017.07.007
  65. Jean, Armengaud. "Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants.". Data in brief (2017): https://europepmc.org/articles/PMC5526514.
    10.1016/j.dib.2017.07.009
  66. Jean, Armengaud. "Nutrient recycling facilitates long-term stability of marine microbial phototroph-heterotroph interactions.". Nature microbiology (2017): https://europepmc.org/articles/PMC5495174.
    10.1038/nmicrobiol.2017.100
  67. Jean, Armengaud. "Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.". Nature communications (2017): https://europepmc.org/articles/PMC5440667.
    10.1038/ncomms15300
  68. Jean, Armengaud. "Host Plant Compatibility Shapes the Proteogenome of Frankia coriariae.". Frontiers in microbiology (2017): https://europepmc.org/articles/PMC5411423.
    10.3389/fmicb.2017.00720
  69. Jean, Armengaud. "Experimental separation steps influence the protein content of corona around mesoporous silica nanoparticles.". Nanoscale (2017): https://doi.org/10.1039/c7nr01654a.
    10.1039/c7nr01654a
  70. Jean, Armengaud. "Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry.". Analytical and bioanalytical chemistry (2017): https://doi.org/10.1007/s00216-017-0348-0.
    10.1007/s00216-017-0348-0
  71. Jean, Armengaud. "Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria.". MicrobiologyOpen (2017): https://europepmc.org/articles/PMC5552922.
    10.1002/mbo3.477
  72. Jean, Armengaud. "Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil.". Genome announcements (2017): https://europepmc.org/articles/PMC5383885.
    10.1128/genomea.00092-17
  73. Jean, Armengaud. "The timeline of corona formation around silica nanocarriers highlights the role of the protein interactome.". Nanoscale (2017): https://doi.org/10.1039/c6nr04765c.
    10.1039/c6nr04765c
  74. Jean, Armengaud. "Emerin self-assembly mechanism: role of the LEM domain.". The FEBS journal (2017): https://doi.org/10.1111/febs.13983.
    10.1111/febs.13983
  75. Jean, Armengaud. "Defining Diagnostic Biomarkers Using Shotgun Proteomics and MALDI-TOF Mass Spectrometry.". Methods in molecular biology (Clifton, N.J.) (2017): https://doi.org/10.1007/978-1-4939-7037-7_6.
    10.1007/978-1-4939-7037-7_6
  76. Jean, Armengaud. "Striking against bioterrorism with advanced proteomics and reference methods.". Proteomics (2017): https://doi.org/10.1002/pmic.201600412.
    10.1002/pmic.201600412
  77. Jean, Armengaud. "Exoproteomics of Pathogens: Analysis of Toxins and Other Virulence Factors by Proteomics.". Methods in enzymology (2017): https://doi.org/10.1016/bs.mie.2016.09.033.
    10.1016/bs.mie.2016.09.033
  78. Jean, Armengaud. "RNA-binding proteins are a major target of silica nanoparticles in cell extracts.". Nanotoxicology (2016): http://europepmc.org/abstract/med/27705051.
    10.1080/17435390.2016.1244299
  79. Jean, Armengaud. "Oxidative DNA Damage and Repair in the Radioresistant Archaeon Thermococcus gammatolerans.". Chemical research in toxicology (2016): http://europepmc.org/abstract/med/27676238.
    10.1021/acs.chemrestox.6b00128
  80. Jean, Armengaud. "Reannotation of Genomes by Means of Proteomics Data.". Methods in enzymology (2016): https://doi.org/10.1016/bs.mie.2016.09.019.
    10.1016/bs.mie.2016.09.019
  81. Jean, Armengaud. "Deciphering the interactions between the Bacillus cereus linear plasmid, pBClin15, and its host by high-throughput comparative proteomics.". Journal of proteomics (2016): http://europepmc.org/abstract/med/27321915.
    10.1016/j.jprot.2016.06.022
  82. Jean, Armengaud. "High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum.". Journal of proteomics (2016): http://europepmc.org/abstract/med/27404005.
    10.1016/j.jprot.2016.07.007
  83. Jean, Armengaud. "Proteome data to explore the impact of pBClin15 on Bacillus cereus ATCC 14579.". Data in brief (2016): http://europepmc.org/abstract/med/27547804.
    10.1016/j.dib.2016.07.042
  84. Jean, Armengaud. "Ovary and embryo proteogenomic dataset revealing diversity of vitellogenins in the crustacean Gammarus fossarum.". Data in brief (2016): http://europepmc.org/abstract/med/27547807.
    10.1016/j.dib.2016.07.045
  85. Jean, Armengaud. "Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline.". Molecular & cellular proteomics : MCP (2016): http://europepmc.org/abstract/med/26902207.
    10.1074/mcp.m115.050989
  86. Jean, Armengaud. "Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.". Extremophiles : life under extreme conditions (2016): http://europepmc.org/abstract/med/27039108.
    10.1007/s00792-016-0822-1
  87. Jean, Armengaud. "Next-generation proteomics faces new challenges in environmental biotechnology.". Current opinion in biotechnology (2016): http://europepmc.org/abstract/med/26950175.
    10.1016/j.copbio.2016.02.025
  88. Jean, Armengaud. "Post-translational methylations of the archaeal Mre11:Rad50 complex throughout the DNA damage response.". Molecular microbiology (2016): http://europepmc.org/abstract/med/26724682.
    10.1111/mmi.13322
  89. Jean, Armengaud. "Mass spectrometry for the detection of bioterrorism agents: from environmental to clinical applications.". Journal of mass spectrometry : JMS (2016): http://europepmc.org/abstract/med/26956386.
    10.1002/jms.3747
  90. Jean, Armengaud. "Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach.". Microbial biotechnology (2016): http://europepmc.org/abstract/med/26986205.
    10.1111/1751-7915.12328
  91. Jean, Armengaud. "PprA Protein Is Involved in Chromosome Segregation via Its Physical and Functional Interaction with DNA Gyrase in Irradiated Deinococcus radiodurans Bacteria.". mSphere (2016): http://europepmc.org/abstract/med/27303692.
    10.1128/msphere.00036-15
  92. Jean, Armengaud. "Clinical implications of recent advances in proteogenomics.". Expert review of proteomics (2016): http://europepmc.org/abstract/med/26654119.
    10.1586/14789450.2016.1132169
  93. Jean, Armengaud. "Implementation of meiosis prophase I programme requires a conserved retinoid-independent stabilizer of meiotic transcripts.". Nature communications (2016): http://europepmc.org/abstract/med/26742488.
    10.1038/ncomms10324
  94. Jean, Armengaud. "Data for comparative proteomics of ovaries from five non-model, crustacean amphipods.". Data in brief (2015): http://europepmc.org/abstract/med/26380837.
    10.1016/j.dib.2015.07.037
  95. Jean, Armengaud. "Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria.". Molecular microbiology (2015): http://europepmc.org/abstract/med/26337258.
    10.1111/mmi.13209
  96. Jean, Armengaud. "The abundant and essential HU proteins in Deinococcus deserti and Deinococcus radiodurans are translated from leaderless mRNA.". Microbiology (Reading, England) (2015): http://europepmc.org/abstract/med/26385459.
    10.1099/mic.0.000186
  97. Jean, Armengaud. "Proteomics of the Roseobacter clade, a window to the marine microbiology landscape.". Proteomics (2015): http://europepmc.org/abstract/med/26415894.
    10.1002/pmic.201500222
  98. Jean, Armengaud. "Microbiomes - embracing complexity.". Proteomics (2015): http://europepmc.org/abstract/med/26468045.
    10.1002/pmic.201570183
  99. Jean, Armengaud. "Power of positive thinking in quantitative proteomics.". Proteomics (2015): http://europepmc.org/abstract/med/26227558.
    10.1002/pmic.201500307
  100. Trapp J; Almunia C; Gaillard JC; Pible O; Chaumot A; Geffard O; Armengaud J. "Proteogenomic insights into the core-proteome of female reproductive tissues from crustacean amphipods.". (2015): http://europepmc.org/abstract/med/26170043.
    10.1016/j.jprot.2015.06.017
  101. Pible O; Armengaud J. "Improving the quality of genome, protein sequence, and taxonomy databases: a prerequisite for microbiome meta-omics 2.0.". (2015): http://europepmc.org/abstract/med/26038180.
    10.1002/pmic.201500104
  102. Sghaier H; Hezbri K; Ghodhbane-Gtari F; Pujic P; Sen A; Daffonchio D; Boudabous A; et al. "Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes.". (2015): http://europepmc.org/abstract/med/26125681.
    10.1038/ismej.2015.108
  103. Christie-Oleza JA; Armengaud J; Guerin P; Scanlan DJ. "Functional distinctness in the exoproteomes of marine Synechococcus.". (2015): http://europepmc.org/abstract/med/25727668.
    10.1111/1462-2920.12822
  104. Christie-Oleza JA; Scanlan DJ; Armengaud J. ""You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions.". (2015): http://europepmc.org/abstract/med/25728650.
    10.1002/pmic.201400562
  105. Yang YS; Fernandez B; Lagorce A; Aloin V; De Guillen KM; Boyer JB; Dedieu A; et al. "Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans.". (2015): http://europepmc.org/abstract/med/25359407.
    10.1002/pmic.201300535
  106. Trapp J; Armengaud J; Pible O; Gaillard JC; Abbaci K; Habtoul Y; Chaumot A; Geffard O. "Proteomic investigation of male Gammarus fossarum, a freshwater crustacean, in response to endocrine disruptors.". (2015): http://europepmc.org/abstract/med/25363278.
    10.1021/pr500984z
  107. Madeira JP; Alpha-Bazin B; Armengaud J; Duport C. "Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation.". (2015): http://europepmc.org/abstract/med/25954265.
    10.3389/fmicb.2015.00342
  108. Pisani C; Gaillard JC; Nouvel V; Odorico M; Armengaud J; Prat O. "High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells: grasping complex toxicity with a great depth of field.". (2015): http://europepmc.org/abstract/med/25895662.
    10.1186/s12864-015-1521-5
  109. Jean, Armengaud. "Salt Stress Induced Changes in the Exoproteome of the Halotolerant Bacterium Tistlia consotensis Deciphered by Proteogenomics.". PloS one (2015): http://europepmc.org/abstract/med/26287734.
    10.1371/journal.pone.0135065
  110. Jean, Armengaud. "Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors.". Frontiers in microbiology (2015): http://europepmc.org/abstract/med/26500610.
    10.3389/fmicb.2015.01004
  111. Trapp J; Armengaud J; Salvador A; Chaumot A; Geffard O. "Next-generation proteomics: toward customized biomarkers for environmental biomonitoring.". (2014): http://europepmc.org/abstract/med/25345346.
    10.1021/es501673s
  112. Trapp J; Geffard O; Imbert G; Gaillard JC; Davin AH; Chaumot A; Armengaud J. "Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods.". (2014): http://europepmc.org/abstract/med/25293947.
    10.1074/mcp.M114.038851
  113. Hartmann EM; Armengaud J. "N-terminomics and proteogenomics, getting off to a good start.". (2014): http://europepmc.org/abstract/med/25116052.
    10.1002/pmic.201400157
  114. Hartmann EM; Durighello E; Pible O; Nogales B; Beltrametti F; Bosch R; Christie-Oleza JA; Armengaud J. "Proteomics meets blue biotechnology: a wealth of novelties and opportunities.". (2014): http://europepmc.org/abstract/med/24780860.
    10.1016/j.margen.2014.04.003
  115. Durighello E; Bellanger L; Ezan E; Armengaud J. "Proteogenomic biomarkers for identification of Francisella species and subspecies by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry.". (2014): http://europepmc.org/abstract/med/25215633.
    10.1021/ac501840g
  116. Boyer JB; Dedieu A; Armengaud J; Verdié P; Subra G; Martinez J; Enjalbal C. "N- and O-acetylation of threonine residues in the context of proteomics.". (2014): http://europepmc.org/abstract/med/24937263.
    10.1016/j.jprot.2014.06.005
  117. Olivier Pible; Erica M. Hartmann; Gilles Imbert; Jean Armengaud. "The importance of recognizing and reporting sequence database contamination for proteomics". EuPA Open Proteomics 3 (2014): 246-249. http://dx.doi.org/10.1016/j.euprot.2014.04.001.
    10.1016/j.euprot.2014.04.001
  118. Armengaud J; Trapp J; Pible O; Geffard O; Chaumot A; Hartmann EM. "Non-model organisms, a species endangered by proteogenomics.". (2014): http://europepmc.org/abstract/med/24440519.
    10.1016/j.jprot.2014.01.007
  119. Berta P; Bourg G; Hanna N; Saadeh B; Armengaud J; Patey G; O'Callaghan D. "The Brucella suis IbpA heat-shock chaperone is not required for virulence or for expression of the VirB type IV secretion system VirB8 protein.". (2014): http://europepmc.org/abstract/med/24517122.
    10.1111/lam.12231
  120. Bland C; Hartmann EM; Christie-Oleza JA; Fernandez B; Armengaud J. "N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography.". (2014): http://europepmc.org/abstract/med/24536027.
    10.1074/mcp.O113.032854
  121. de Groot A; Roche D; Fernandez B; Ludanyi M; Cruveiller S; Pignol D; Vallenet D; Armengaud J; Blanchard L. "RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti.". (2014): http://europepmc.org/abstract/med/24723731.
    10.1093/gbe/evu069
  122. Bland C; Bellanger L; Armengaud J. "Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.". (2014): http://europepmc.org/abstract/med/24313271.
    10.1021/pr400774z
  123. C. Bland; E. M. Hartmann; J. A. Christie-Oleza; B. Fernandez; J. Armengaud. "N-Terminal-oriented Proteogenomics of the Marine Bacterium Roseobacter Denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) Labeling and Diagonal Chromatography". Molecular & Cellular Proteomics 13 5 (2014): 1369-1381. http://dx.doi.org/10.1074/mcp.o113.032854.
    10.1074/mcp.o113.032854
  124. Rubiano-Labrador C; Bland C; Miotello G; Guérin P; Pible O; Baena S; Armengaud J. "Proteogenomic insights into salt tolerance by a halotolerant alpha-proteobacterium isolated from an Andean saline spring.". (2014): http://europepmc.org/abstract/med/23727365.
    10.1016/j.jprot.2013.05.020
  125. Hartmann EM; Armengaud J. "Shotgun proteomics suggests involvement of additional enzymes in dioxin degradation by Sphingomonas wittichii RW1.". (2014): http://europepmc.org/abstract/med/24118890.
    10.1111/1462-2920.12264
  126. Hartmann EM; Allain F; Gaillard JC; Pible O; Armengaud J. "Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria.". (2014): http://europepmc.org/abstract/med/25172287.
    10.1007/978-1-4939-1261-2_16
  127. Pereira S; Malard V; Ravanat JL; Davin AH; Armengaud J; Foray N; Adam-Guillermin C. "Low doses of gamma-irradiation induce an early bystander effect in zebrafish cells which is sufficient to radioprotect cells.". (2014): http://europepmc.org/abstract/med/24667817.
    10.1371/journal.pone.0092974
  128. Durighello E; Christie-Oleza JA; Armengaud J. "Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395.". (2014): http://europepmc.org/abstract/med/24586966.
    10.1371/journal.pone.0089691
  129. Laouami S; Clair G; Armengaud J; Duport C. "Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579.". (2014): http://europepmc.org/abstract/med/25216269.
    10.1371/journal.pone.0107354
  130. Clair G; Lorphelin A; Armengaud J; Duport C. "OhrRA functions as a redox-responsive system controlling toxinogenesis in Bacillus cereus.". (2013): http://europepmc.org/abstract/med/24184231.
    10.1016/j.jprot.2013.10.024
  131. de la Tour CB; Passot FM; Toueille M; Mirabella B; Guérin P; Blanchard L; Servant P; et al. "Comparative proteomics reveals key proteins recruited at the nucleoid of Deinococcus after irradiation-induced DNA damage.". (2013): http://europepmc.org/abstract/med/24307635.
    10.1002/pmic.201300249
  132. Christie-Oleza JA; Miotello G; Armengaud J. "Proteogenomic definition of biomarkers for the large Roseobacter clade and application for a quick screening of new environmental isolates.". (2013): http://europepmc.org/abstract/med/24044462.
    10.1021/pr400554e
  133. Armengaud J; Hartmann EM; Bland C. "Proteogenomics for environmental microbiology.". (2013): http://europepmc.org/abstract/med/23636904.
    10.1002/pmic.201200576
  134. Suarez S; Ferroni A; Lotz A; Jolley KA; Guérin P; Leto J; Dauphin B; et al. "Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory.". (2013): http://europepmc.org/abstract/med/23916798.
    10.1016/j.mimet.2013.07.021
  135. Darolles C; Sage N; Armengaud J; Malard V. "In vitro assessment of cobalt oxide particle toxicity: identifying and circumventing interference.". (2013): http://europepmc.org/abstract/med/23624240.
    10.1016/j.tiv.2013.04.008
  136. Bahassou-Benamri R; Davin AH; Gaillard JC; Alonso B; Odorico M; Pible O; Armengaud J; Godon C. "Subcellular localization and interaction network of the mRNA decay activator Pat1 upon UV stress.". (2013): http://europepmc.org/abstract/med/23847025.
    10.1002/yea.2968
  137. Alonso B; Beraud C; Meguellati S; Chen SW; Pellequer JL; Armengaud J; Godon C. "Eukaryotic GPN-loop GTPases paralogs use a dimeric assembly reminiscent of archeal GPN.". (2013): http://europepmc.org/abstract/med/23324351.
    10.4161/cc.23367
  138. Armengaud J. "Microbiology and proteomics, getting the best of both worlds!". (2013): http://europepmc.org/abstract/med/22708953.
    10.1111/j.1462-2920.2012.02811.x
  139. Christie-Oleza JA; Piña-Villalonga JM; Guerin P; Miotello G; Bosch R; Nogales B; Armengaud J. "Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus.". (2013): http://europepmc.org/abstract/med/22712501.
    10.1111/j.1462-2920.2012.02812.x
  140. Peyrol J; Thizon C; Gaillard JC; Marchetti C; Armengaud J; Rollin-Genetet F. "Multiple phosphorylable sites in the Zaire Ebolavirus nucleoprotein evidenced by high resolution tandem mass spectrometry.". (2013): http://europepmc.org/abstract/med/23068963.
    10.1016/j.jviromet.2012.10.003
  141. Norais C; Servant P; Bouthier-de-la-Tour C; Coureux PD; Ithurbide S; Vannier F; Guerin PP; et al. "The Deinococcus radiodurans DR1245 protein, a DdrB partner homologous to YbjN proteins and reminiscent of type III secretion system chaperones.". (2013): http://europepmc.org/abstract/med/23441204.
    10.1371/journal.pone.0056558
  142. Dedieu A; Sahinovic E; Guérin P; Blanchard L; Fochesato S; Meunier B; de Groot A; Armengaud J. "Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation.". (2013): http://europepmc.org/abstract/med/23320389.
    10.1186/1477-5956-11-3
  143. Perche-Letuvée P; Kathirvelu V; Berggren G; Clemancey M; Latour JM; Maurel V; Douki T; et al. "4-Demethylwyosine synthase from Pyrococcus abyssi is a radical-S-adenosyl-L-methionine enzyme with an additional [4Fe-4S](+2) cluster that interacts with the pyruvate co-substrate.". (2012): http://europepmc.org/abstract/med/23043105.
    10.1074/jbc.M112.405019
  144. P. Perche-Letuvee; V. Kathirvelu; G. Berggren; M. Clemancey; J.-M. Latour; V. Maurel; T. Douki; et al. "4-Demethylwyosine Synthase from Pyrococcus abyssi Is a Radical-S-adenosyl-L-methionine Enzyme with an Additional [4Fe-4S]+2 Cluster That Interacts with the Pyruvate Co-substrate". Journal of Biological Chemistry 287 49 (2012): 41174-41185. http://dx.doi.org/10.1074/jbc.m112.405019.
    10.1074/jbc.m112.405019
  145. Suarez-Suarez LY; Brunet-Galmes I; Piña-Villalonga JM; Christie-Oleza JA; Peña A; Bennasar A; Armengaud J; Nogales B; Bosch R. "Draft genome sequence of Citreicella aestuarii strain 357, a member of the Roseobacter clade isolated without xenobiotic pressure from a petroleum-polluted beach.". (2012): http://europepmc.org/abstract/med/22965089.
    10.1128/JB.01261-12
  146. Armengaud J; Christie-Oleza JA; Clair G; Malard V; Duport C. "Exoproteomics: exploring the world around biological systems.". (2012): http://europepmc.org/abstract/med/23194272.
    10.1586/epr.12.52
  147. L. Y. Suarez-Suarez; I. Brunet-Galmes; J. M. Pina-Villalonga; J. A. Christie-Oleza; A. Pena; A. Bennasar; J. Armengaud; B. Nogales; R. Bosch. "Draft Genome Sequence of Citreicella aestuarii Strain 357, a Member of the Roseobacter Clade Isolated without Xenobiotic Pressure from a Petroleum-Polluted Beach". Journal of Bacteriology 194 19 (2012): 5464-5465. http://dx.doi.org/10.1128/jb.01261-12.
    10.1128/jb.01261-12
  148. Clair G; Armengaud J; Duport C. "Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus.". (2012): http://europepmc.org/abstract/med/22232490.
    10.1074/mcp.M111.013102
  149. Toueille M; Mirabella B; Guérin P; Bouthier de la Tour C; Boisnard S; Nguyen HH; Blanchard L; et al. "A comparative proteomic approach to better define Deinococcus nucleoid specificities.". (2012): http://europepmc.org/abstract/med/22446890.
    10.1016/j.jprot.2012.03.002
  150. Christie-Oleza JA; Piña-Villalonga JM; Bosch R; Nogales B; Armengaud J. "Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria.". (2012): http://europepmc.org/abstract/med/22122883.
    10.1074/mcp.M111.013110
  151. G. Clair; J. Armengaud; C. Duport. "Restricting Fermentative Potential by Proteome Remodeling: AN ADAPTIVE STRATEGY EVIDENCED IN BACILLUS CEREUS". Molecular & Cellular Proteomics 11 6 (2012): M111.013102-M111.013102. http://dx.doi.org/10.1074/mcp.m111.013102.
    10.1074/mcp.m111.013102
  152. Malard V; Chardan L; Roussi S; Darolles C; Sage N; Gaillard JC; Armengaud J. "Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics.". (2012): http://europepmc.org/abstract/med/22079246.
    10.1016/j.jprot.2011.10.025
  153. Christie-Oleza JA; Fernandez B; Nogales B; Bosch R; Armengaud J. "Proteomic insights into the lifestyle of an environmentally relevant marine bacterium.". (2012): http://europepmc.org/abstract/med/21776030.
    10.1038/ismej.2011.86
  154. Christie-Oleza JA; Miotello G; Armengaud J. "High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.". (2012): http://europepmc.org/abstract/med/22336032.
    10.1186/1471-2164-13-73
  155. J. A. Christie-Oleza; J. M. Pina-Villalonga; R. Bosch; B. Nogales; J. Armengaud. "Comparative Proteogenomics of Twelve Roseobacter Exoproteomes Reveals Different Adaptive Strategies Among These Marine Bacteria". Molecular & Cellular Proteomics 11 2 (2011): M111.013110-M111.013110. http://dx.doi.org/10.1074/mcp.m111.013110.
    10.1074/mcp.m111.013110
  156. Béatrice Alonso; Guylaine Chaussinand; Jean Armengaud; Christian Godon. "A role for GPN-loop GTPase yGPN1 in sister chromatid cohesion". Cell Cycle 10 11 (2011): 1828-1837. http://dx.doi.org/10.4161/cc.10.11.15763.
    10.4161/cc.10.11.15763
  157. Alonso B; Chaussinand G; Armengaud J; Godon C. "A role for GPN-loop GTPase yGPN1 in sister chromatid cohesion.". (2011): http://europepmc.org/abstract/med/21532343.
  158. Dedieu A; Gaillard JC; Pourcher T; Darrouzet E; Armengaud J. "Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy.". (2011): http://europepmc.org/abstract/med/20978121.
    10.1074/jbc.M110.159483
  159. Ozdemir V; Armengaud J; Dubé L; Aziz RK; Knoppers BM. "Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value.". (2010): http://europepmc.org/abstract/med/21399751.
    10.2174/187569210793368230
  160. A. Dedieu; J.-C. Gaillard; T. Pourcher; E. Darrouzet; J. Armengaud. "Revisiting Iodination Sites in Thyroglobulin with an Organ-oriented Shotgun Strategy". Journal of Biological Chemistry 286 1 (2010): 259-269. http://dx.doi.org/10.1074/jbc.m110.159483.
    10.1074/jbc.m110.159483
  161. de Crécy-Lagard V; Brochier-Armanet C; Urbonavicius J; Fernandez B; Phillips G; Lyons B; Noma A; et al. "Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea.". (2010): http://europepmc.org/abstract/med/20382657.
    10.1093/molbev/msq096
  162. V. Malard; N. Sage; P. Gueraud; W. Naudin; M. Floriani; J. Armengaud; E. Quemeneur. "Particulate cobalt and soluble cobalt: Same metal but different toxicities as assessed by cellular biology and innovative proteomic approaches". Toxicology Letters 196 (2010): S305-S305. http://dx.doi.org/10.1016/j.toxlet.2010.03.964.
    10.1016/j.toxlet.2010.03.964
  163. Clair G; Roussi S; Armengaud J; Duport C. "Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions.". (2010): http://europepmc.org/abstract/med/20368289.
    10.1074/mcp.M000027-MCP201
  164. G. Clair; S. Roussi; J. Armengaud; C. Duport. "Expanding the Known Repertoire of Virulence Factors Produced by Bacillus cereus through Early Secretome Profiling in Three Redox Conditions". Molecular & Cellular Proteomics 9 7 (2010): 1486-1498. http://dx.doi.org/10.1074/mcp.m000027-mcp201.
    10.1074/mcp.m000027-mcp201
  165. Baudet M; Ortet P; Gaillard JC; Fernandez B; Guérin P; Enjalbal C; Subra G; et al. "Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.". (2010): http://europepmc.org/abstract/med/19875382.
    10.1074/mcp.M900359-MCP200
  166. Armengaud J. "Proteogenomics and systems biology: quest for the ultimate missing parts.". (2010): http://europepmc.org/abstract/med/20121477.
    10.1586/epr.09.104
  167. Jean Armengaud. "Systems Biology and Synthetic Biology: Understanding Biological Complexity on the Critical Path to Personalized Medicine". CPPM 8 4 (2010): 257-267. http://dx.doi.org/10.2174/187569210793368186.
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  168. Christie-Oleza JA; Armengaud J. "In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study.". (2010): http://europepmc.org/abstract/med/20948905.
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  169. M. Baudet; P. Ortet; J.-C. Gaillard; B. Fernandez; P. Guerin; C. Enjalbal; G. Subra; et al. "Proteomics-based Refinement of Deinococcus deserti Genome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons". Molecular & Cellular Proteomics 9 2 (2009): 415-426. http://dx.doi.org/10.1074/mcp.m900359-mcp200.
    10.1074/mcp.m900359-mcp200
  170. Véronique Malard; Jean-Charles Gaillard; Frédéric Bérenguer; Nicole Sage; Jean Armengaud; Eric Quéméneur. "Novel quantitative proteomic strategies for assessing metals nephrotoxicity in rats". Toxicology Letters 189 (2009): S95-S95. http://dx.doi.org/10.1016/j.toxlet.2009.06.286.
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  171. Esbelin J; Armengaud J; Zigha A; Duport C. "ResDE-dependent regulation of enterotoxin gene expression in Bacillus cereus: evidence for multiple modes of binding for ResD and interaction with Fnr.". (2009): http://europepmc.org/abstract/med/19395489.
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  172. Armengaud J. "A perfect genome annotation is within reach with the proteomics and genomics alliance.". (2009): http://europepmc.org/abstract/med/19410500.
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  173. J. Esbelin; J. Armengaud; A. Zigha; C. Duport. "ResDE-Dependent Regulation of Enterotoxin Gene Expression in Bacillus cereus: Evidence for Multiple Modes of Binding for ResD and Interaction with Fnr". Journal of Bacteriology (2009):
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  174. de Groot A; Dulermo R; Ortet P; Blanchard L; Guérin P; Fernandez B; Vacherie B; et al. "Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti.". (2009): http://europepmc.org/abstract/med/19370165.
    10.1371/journal.pgen.1000434
  175. Zivanovic Y; Armengaud J; Lagorce A; Leplat C; Guérin P; Dutertre M; Anthouard V; et al. "Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea.". (2009): http://europepmc.org/abstract/med/19558674.
    10.1186/gb-2009-10-6-r70
  176. Esbelin J; Jouanneau Y; Armengaud J; Duport C. "ApoFnr binds as a monomer to promoters regulating the expression of enterotoxin genes of Bacillus cereus.". (2008): http://europepmc.org/abstract/med/18424517.
    10.1128/JB.00336-08
  177. J. Esbelin; Y. Jouanneau; J. Armengaud; C. Duport. "ApoFnr Binds as a Monomer to Promoters Regulating the Expression of Enterotoxin Genes of Bacillus cereus". Journal of Bacteriology 190 12 (2008): 4242-4251. http://dx.doi.org/10.1128/jb.00336-08.
    10.1128/jb.00336-08
  178. Gabant G; Augier J; Armengaud J. "Assessment of solvent residues accessibility using three Sulfo-NHS-biotin reagents in parallel: application to footprint changes of a methyltransferase upon binding its substrate.". (2008): http://europepmc.org/abstract/med/17968972.
    10.1002/jms.1328
  179. Habauzit D; Armengaud J; Roig B; Chopineau J. "Determination of estrogen presence in water by SPR using estrogen receptor dimerization.". (2008): http://europepmc.org/abstract/med/18026938.
    10.1007/s00216-007-1725-x
  180. Gras S; Chaumont V; Fernandez B; Carpentier P; Charrier-Savournin F; Schmitt S; Pineau C; et al. "Structural insights into a new homodimeric self-activated GTPase family.". (2007): http://europepmc.org/abstract/med/17468740.
    10.1038/sj.embor.7400958
  181. Sainz G; Jakoncic J; Sieker LC; Stojanoff V; Sanishvili N; Asso M; Bertrand P; Armengaud J; Jouanneau Y. "Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction.". (2006): http://europepmc.org/abstract/med/16402206.
    10.1007/s00775-005-0069-2
  182. Urbonavicius J; Armengaud J; Grosjean H. "Identity elements required for enzymatic formation of N2,N2-dimethylguanosine from N2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA.". (2006): http://europepmc.org/abstract/med/16434050.
    10.1016/j.jmb.2005.12.087
  183. Gabant G; Auxilien S; Tuszynska I; Locard M; Gajda MJ; Chaussinand G; Fernandez B; et al. "THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain.". (2006): http://europepmc.org/abstract/med/16687654.
    10.1093/nar/gkl145
  184. S. Gras; B. Fernandez; V. Chaumont; P. Carpentier; J. Armengaud; D. Housset. "Structure of a PACE protein: PAB0955, first member of new GTPase family". Acta Crystallogr Sect A Found Crystallogr 61 a1 (2005): c498-c498. http://dx.doi.org/10.1107/s0108767305079468.
    10.1107/s0108767305079468
  185. Gras S; Fernandez B; Chaumont V; Carpentier P; Armengaud J; Housset D. "Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product.". (2005): http://europepmc.org/abstract/med/16510996.
    10.1107/S1744309105000035
  186. Stéphanie Gras; Bernard Fernandez; Valérie Chaumont; Philippe Carpentier; Jean Armengaud; Dominique Housset. "Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product". Acta Cryst Sect F Struct Biol Cryst Commun 61 2 (2005): 208-211. http://dx.doi.org/10.1107/s1744309105000035.
    10.1107/s1744309105000035
  187. Armengaud J; Dedieu A; Solques O; Pellequer JL; Quemeneur E. "Deciphering structure and topology of conserved COG2042 orphan proteins.". (2005): http://europepmc.org/abstract/med/15701177.
    10.1186/1472-6807-5-3
  188. Armengaud J; Urbonavicius J; Fernandez B; Chaussinand G; Bujnicki JM; Grosjean H. "N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota.". (2004): http://europepmc.org/abstract/med/15210688.
    10.1074/jbc.M403845200
  189. S. Gras; P. Carpentier; B. Fernandez; J. Armengaud; P. Forterre; D. Housset. "Structure of PACE12, an archaebacterial protein with GTPase activity and of unknown biological function". Acta Crystallogr Sect A Found Crystallogr 60 a1 (2004): s127-s127. http://dx.doi.org/10.1107/s0108767304097491.
    10.1107/s0108767304097491
  190. J. Armengaud; J. Urbonavicius; B. Fernandez; G. Chaussinand; J. M. Bujnicki; H. Grosjean. "N2-Methylation of Guanosine at Position 10 in tRNA Is Catalyzed by a THUMP Domain-containing, S-Adenosylmethionine-dependent Methyltransferase, Conserved in Archaea and Eukaryota". Journal of Biological Chemistry 279 35 (2004): 37142-37152. http://dx.doi.org/10.1074/jbc.m403845200.
    10.1074/jbc.m403845200
  191. Armengaud J; Fernandez B; Chaumont V; Rollin-Genetet F; Finet S; Marchetti C; Myllykallio H; et al. "Identification, purification, and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (coenzyme A biosynthetic pathway) in the hyperthermophilic archaeon Pyrococcus abyssi.". (2003): http://europepmc.org/abstract/med/12756245.
    10.1074/jbc.M301891200
  192. J. Armengaud; B. Fernandez; V. Chaumont; F. Rollin-Genetet; S. Finet; C. Marchetti; H. Myllykallio; et al. "Identification, Purification, and Characterization of an Eukaryotic-like Phosphopantetheine Adenylyltransferase (Coenzyme A Biosynthetic Pathway) in the Hyperthermophilic Archaeon Pyrococcus abyssi". Journal of Biological Chemistry 278 33 (2003): 31078-31087. http://dx.doi.org/10.1074/jbc.m301891200.
    10.1074/jbc.m301891200
  193. Tropel D; Meyer C; Armengaud J; Jouanneau Y. "Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31.". (2002): http://europepmc.org/abstract/med/11889489.
    10.1007/s00203-002-0399-1
  194. Ugrinova I; Pasheva EA; Armengaud J; Pashev IG. "In vivo acetylation of HMG1 protein enhances its binding affinity to distorted DNA structures.". (2001): http://europepmc.org/abstract/med/11724579.
    10.1021/bi0113364
  195. T. Potrawfke; J. Armengaud; R.-M. Wittich. "Chlorocatechols Substituted at Positions 4 and 5 Are Substrates of the Broad-Spectrum Chlorocatechol 1,2-Dioxygenase of Pseudomonas chlororaphis RW71". Journal of Bacteriology 183 3 (2001): 997-1011. http://dx.doi.org/10.1128/jb.183.3.997-1011.2001.
    10.1128/jb.183.3.997-1011.2001
  196. Jean Armengaud; Germaine Sainz; Yves Jouanneau; Larry C. Sieker. "Crystallization and preliminary X-ray diffraction analysis of a [2Fe–2S] ferredoxin (FdVI) from Rhodobacter capsulatus". Acta Crystallogr D Biol Cryst 57 2 (2001): 301-303. http://dx.doi.org/10.1107/s0907444900017832.
    10.1107/s0907444900017832
  197. Armengaud J; Sainz G; Jouanneau Y; Sieker LC. "Crystallization and preliminary X-ray diffraction analysis of a [2Fe-2S] ferredoxin (FdVI) from Rhodobacter capsulatus.". (2001): http://europepmc.org/abstract/med/11173487.
    10.1107/S0907444900017832
  198. Potrawfke T; Armengaud J; Wittich RM. "Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71.". (2001): http://europepmc.org/abstract/med/11208799.
    10.1128/JB.183.3.997-1011.2001
  199. N. Hugo; C. Meyer; J. Armengaud; J. Gaillard; K. N. Timmis; Y. Jouanneau. "Characterization of Three XylT-Like [2Fe-2S] Ferredoxins Associated with Catabolism of Cresols or Naphthalene: Evidence for Their Involvement in Catechol Dioxygenase Reactivation". Journal of Bacteriology 182 19 (2000): 5580-5585. http://dx.doi.org/10.1128/jb.182.19.5580-5585.2000.
    10.1128/jb.182.19.5580-5585.2000
  200. Hugo N; Meyer C; Armengaud J; Gaillard J; Timmis KN; Jouanneau Y. "Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: evidence for their involvement in catechol dioxygenase reactivation.". (2000): http://europepmc.org/abstract/med/10986264.
    10.1128/JB.182.19.5580-5585.2000
  201. J. Armengaud; J. Gaillard; K. N. Timmis. "A Second [2Fe-2S] Ferredoxin from Sphingomonas sp. Strain RW1 Can Function as an Electron Donor for the Dioxin Dioxygenase". Journal of Bacteriology 182 8 (2000): 2238-2244. http://dx.doi.org/10.1128/jb.182.8.2238-2244.2000.
    10.1128/jb.182.8.2238-2244.2000
  202. Armengaud J; Gaillard J; Timmis KN. "A second [2Fe-2S] ferredoxin from Sphingomonas sp. Strain RW1 can function as an electron donor for the dioxin dioxygenase.". (2000): http://europepmc.org/abstract/med/10735867.
    10.1128/JB.182.8.2238-2244.2000
  203. Armengaud J; Timmis KN; Wittich RM. "A functional 4-hydroxysalicylate/hydroxyquinol degradative pathway gene cluster is linked to the initial dibenzo-p-dioxin pathway genes in Sphingomonas sp. strain RW1.". (1999): http://europepmc.org/abstract/med/10348858.
  204. Armengaud J; Happe B; Timmis KN. "Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: catabolic genes dispersed on the genome.". (1998): http://europepmc.org/abstract/med/9683494.
  205. Armengaud J; Timmis KN. "The reductase RedA2 of the multi-component dioxin dioxygenase system of Sphingomonas sp. RW1 is related to class-I cytochrome P450-type reductases.". (1998): http://europepmc.org/abstract/med/9654094.
    10.1046/j.1432-1327.1998.2530437.x
  206. Hugo N; Armengaud J; Gaillard J; Timmis KN; Jouanneau Y. "A novel -2Fe-2S- ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase.". (1998): http://europepmc.org/abstract/med/9545294.
    10.1074/jbc.273.16.9622
  207. Armengaud J; Timmis KN. "Molecular characterization of Fdx1, a putidaredoxin-type [2Fe-2S] ferredoxin able to transfer electrons to the dioxin dioxygenase of Sphingomonas sp. RW1.". (1997): http://europepmc.org/abstract/med/9288905.
    10.1111/j.1432-1033.1997.00833.x
  208. Armengaud J; Meyer C; Jouanneau Y. "A [2Fe-2S] ferredoxin (FdVI) is essential for growth of the photosynthetic bacterium Rhodobacter capsulatus.". (1997): http://europepmc.org/abstract/med/9150228.
  209. Armengaud J; Gaillard J; Forest E; Jouanneau Y. "Characterization of a 2[4Fe-4S] ferredoxin obtained by chemical insertion of the Fe-S clusters into the apoferredoxin II from Rhodobacter capsulatus.". (1995): http://europepmc.org/abstract/med/7635151.
    10.1111/j.1432-1033.1995.tb20712.x
  210. Armengaud J; Jouanneau Y. "Overexpression in Escherichia coli of the fdxA gene encoding Rhodobacter capsulatus ferredoxin II.". (1995): http://europepmc.org/abstract/med/7606166.
    10.1006/prep.1995.1022
  211. Armengaud J; Meyer C; Jouanneau Y. "Recombinant expression of the fdxD gene of Rhodobacter capsulatus and characterization of its product, a [2Fe-2S] ferredoxin.". (1994): http://europepmc.org/abstract/med/8002946.
  212. Armengaud J; Jouanneau Y. "Addition of a class IIS enzyme site in the mutagenic primer to improve two-step PCR-based targeted mutagenesis.". (1993): http://europepmc.org/abstract/med/8415019.
    10.1093/nar/21.18.4424
  213. Armengaud J; de Nuova Perez L; Lemay P; Masson JM. "Production of a full length Tat protein in E. coli and its purification.". (1991): http://europepmc.org/abstract/med/2026253.
    10.1016/0014-5793(91)80467-H

Outros

Conjunto de dados
  1. Proteogenomics annotation of Thermococcus gammatolerans.
Outra produção
  1. Tim Van Den Bossche; Benoit J. Kunath; Kay Schallert; Stephanie S. Schäpe; Paul E. Abraham; Jean Armengaud; Magnus Ø. Arntzen; et al. 2021. Critical Assessment of Metaproteome Investigation (CAMPI): a Multi-Lab Comparison of Established Workflows. https://doi.org/10.1101/2021.03.05.433915.
    10.1101/2021.03.05.433915
  2. Grenga L; Gallais F; Pible O; Gaillard J; Gouveia D; Batina H; Bazaline N; et al. 2020. Shotgun proteomics of SARS-CoV-2 infected cells and its application to the optimisation of whole viral particle antigen production for vaccines. http://europepmc.org/abstract/PPR/PPR152259.
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  3. Lionel Tarrago; Sandrine Grosse; Marina I. Siponen; David Lemaire; Béatrice Alonso; Guylaine Miotello; Jean Armengaud; et al. 2018. The Rhodobacter sphaeroides methionine sulfoxide reductase MsrP can reduce R- and S-diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates. https://doi.org/10.1101/243626.
    10.1101/243626
  4. Jean-Claude Amiard; Rachid Amara; Claude Amiard-Triquet; Jean Armengaud; M.J. Bebianno; Brigitte Berthet; Angel Borja; et al. 2015. Contributors. http://dx.doi.org/10.1016/b978-0-12-800949-9.01002-0.
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  5. Arnaud Chaumot; Olivier Geffard; Jean Armengaud; Lorraine Maltby. 2015. Gammarids as Reference Species for Freshwater Monitoring. http://dx.doi.org/10.1016/b978-0-12-800949-9.00011-5.
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  6. Erica M. Hartmann; Jean Armengaud. 2014. Proteogenomics for the Enhanced Discovery of Bacterial Biomarkers. http://dx.doi.org/10.1007/978-94-017-9238-7_11.
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  7. C. Norais; P. Servant; C. Bouthier-de-la-Tour; P.D. Coureux; S. Ithurbide; F. Vannier; P. Guerin; et al. 2013. Crystal Structure of DR_1245 from Deinococcus radiodurans. http://dx.doi.org/10.2210/pdb4h5b/pdb.
    10.2210/pdb4h5b/pdb
  8. S. Gras; P. Carpentier; J. Armengaud; D. Housset. 2007. PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi (after GTP hydrolysis). http://dx.doi.org/10.2210/pdb2oxr/pdb.
    10.2210/pdb2oxr/pdb
  9. S. Gras; P. Carpentier; J. Armengaud; D. Housset. 2006. PAB0955 crystal structure : a GTPase in GTP-gamma-S bound form from Pyrococcus abyssi. http://dx.doi.org/10.2210/pdb1yr7/pdb.
    10.2210/pdb1yr7/pdb
  10. S. Gras; P. Carpentier; J. Armengaud; D. Housset. 2006. PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi. http://dx.doi.org/10.2210/pdb1yr6/pdb.
    10.2210/pdb1yr6/pdb
  11. S. Gras; P. Carpentier; J. Armengaud; D. Housset. 2006. PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from Pyrococcus abyssi. http://dx.doi.org/10.2210/pdb1yr9/pdb.
    10.2210/pdb1yr9/pdb
  12. S. Gras; P. Carpentier; J. Armengaud; D. Housset. 2006. PAB0955 crystal structure : a GTPase in GTP bound form from Pyrococcus abyssi. http://dx.doi.org/10.2210/pdb1yr8/pdb.
    10.2210/pdb1yr8/pdb
  13. S. Gras; P. Carpentier; J. Armengaud; D. Housset. 2006. PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi. http://dx.doi.org/10.2210/pdb1yrb/pdb.
    10.2210/pdb1yrb/pdb
  14. S. Gras; P. Carpentier; J. Armengaud; D. Housset. 2006. PAB0955 crystal structure : a GTPase in GDP bound form from Pyrococcus abyssi. http://dx.doi.org/10.2210/pdb1yra/pdb.
    10.2210/pdb1yra/pdb
  15. Y. Jouanneau; J. Armengaud; N. Hugo; C. Meyer; K. N. Timmis. 1999. Ferredoxin-Mediated Reactivation of Catechol Dioxygenase Improves Aromatic Ring Cleavage in Pseudomonads. http://dx.doi.org/10.1007/978-1-4615-4749-5_12.
    10.1007/978-1-4615-4749-5_12
  16. Jean Armengaud; Kenneth N. Timmis. 1998. Molecular Genetics of the Degradation of Dioxins by Bacteria. http://dx.doi.org/10.1007/978-3-662-06068-1_4.
    10.1007/978-3-662-06068-1_4
  17. Y. Jouanneau; N. Hugo; J. Armengaud; I. Naud; C. Meyer; J. C. Willison. 1995. Electron Transport to Nitrogenase in the Photosynthetic Bacterium Rhodobacter Capsulatus. http://dx.doi.org/10.1007/978-94-009-0173-5_417.
    10.1007/978-94-009-0173-5_417