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Rodrigo Costa is Associate Professor (since 2020) at the Department of Bioengineering (DBE) of Instituto Superior Técnico (IST), University of Lisbon. He graduated in Biological Sciences at the Federal University of Rio de Janeiro, Brazil, in 1998 and obtained his M.Sc. degree in Ecology from this same University in 2001. He acquired his Ph.D. degree in Life Sciences from the Technical University of Braunschweig, Germany, in 2006, and was a post-doctoral fellow at the University of Groningen, The Netherlands, from 2006 to 2008. He was then awarded the Research Scientist contracts “Ciência” (2008) and “FCT Investigator” (2015) from the Portuguese Foundation for Science and Technology (FCT). During this period, he founded and led the “Microbial Ecology and Evolution Research Group” (MicroEcoEvo) at the Centre of Marine Sciences (CCMar), Algarve University, Portugal, where he built a novel molecular microbiology laboratory acquired through extramural funding. Prof. Rodrigo Costa was an invited affiliate (Research Scientist) of the Lawrence Berkeley National Laboratory (LBNL), University of California at Berkeley, USA (March 2019-August 2021), and of the Centre of Marine Sciences (CCMAR), the foremost marine research center in Portugal, part of the European Marine Biological Research Centre (EMBRC) infrastructure. He holds the position (by invitation) of Ambassador of the International Society for Microbial Ecology (ISME) in Portugal, is an invited member of the Editorial Board of Scientific Reports, and member of three academic societies. In 2019, he chaired the International Symposium on Bacterial Genetics and Ecology (BAGECO) in Lisbon, Portugal. Prof. Costa has authored > 80 scientific publications encompassing original research articles in international journals, conference proceedings, book chapters and theses. His published work has been cited over 5,300 times, featuring an h-index of 34 and an i-10 index of 57. Prof. Costa participated in over 150 communications (60 oral) in scientific conferences, workshops, and colloquia. Since 2010, he supervised > 60 individuals - among post-doctoral fellows, Ph.D., M.Sc., and undergraduate students - in the framework of 18 R&D projects (8 as PI / Co-PI), leading three PhD thesis (07 ongoing) and 24 Master thesis completions. Prof. Rodrigo Costa is the coordinator of the course units “Fundamentals of Ecology” and “Microbiomes” at IST-ULisboa. His research addresses the diversity and function of microorganisms in natural and fabricated biomes - with emphasis on Eukaryote-Prokaryote symbioses studied with metagenomics approaches -, their implications to host/ecosystem health and climate regulation, and potential use as renewable sources of innovative biotechnological appliances.
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Identificação

Identificação pessoal

Nome completo
Rodrigo da Silva Costa

Nomes de citação

  • Costa, Rodrigo

Identificadores de autor

Ciência ID
5917-D500-D251
ORCID iD
0000-0002-5932-4101

Telefones

Telefone
  • 218417339 Ext.: 1339 (Profissional)

Moradas

  • Av Rovisco Pais 1, Instituto Superior Técnico, Dep. de Bioengenharia, Alameda Campus, 1049-001, Lisbon, Lisbon, Portugal (Profissional)

Websites

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Biologia

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Português (Idioma materno)
Inglês Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2)
Alemão Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador proficiente (C1)
Formação
Grau Classificação
2002 - 2006
Concluído
 Natural Sciences (Doctor)
Technische Universität Braunschweig, Alemanha
 Magna cum laude
1999 - 2001
Concluído
 Ecology (Master)
Universidade Federal do Rio de Janeiro, Brasil
 Summa cum laude
1995 - 1998
Concluído
 Biological Sciences (Bachelor)
Especialização em Ecology
Universidade Federal do Rio de Janeiro, Brasil
 Cum laude (8.4 in 10)
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento 		Empregador
2014/10 - 2016/03 Investigador principal (carreira) (Investigação) Centro de Ciências do Mar, Portugal
Centro de Ciências do Mar, Portugal
2008/10 - 2013/09 Investigador Auxiliar (carreira) (Investigação) Centro de Ciências do Mar, Portugal
Centro de Ciências do Mar, Portugal
2006/08 - 2008/09 Pós-doutorado (Investigação) Rijksuniversiteit Groningen, Países Baixos
Rijksuniversiteit Groningen, Países Baixos

Docência no Ensino Superior

Categoria Profissional
Instituição de acolhimento 		Empregador
2020/08/01 - Atual Professor Associado (Docente Universitário) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016/04 - Atual Professor Auxiliar (Docente Universitário) Universidade de Lisboa Instituto Superior Técnico, Portugal
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Projetos

Bolsa

Designação Financiadores
2022/01/01 - Atual ChicoBionts - Harnessing the catalyst power of host-microbe interactions: a quest for novel chitinases from octocoral symbionts
EXPL/BIA-MIC/0286/2021
Investigador
Fundação para a Ciência e a Tecnologia
Em curso
2019/10 - 2021/09 “SymbioReactor: sustainable production of bioactive metabolites from microbial symbionts of marine sponges and corals”
FA_05_2017_032
Investigador responsável
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Universidade de Lisboa Instituto Superior Técnico, Portugal
Direção-Geral de Política do Mar - Ministério do Mar
Em curso
2018/08 - 2021/07 MicroControl: Exploiting the healing capacity of nature´s microbiomes for improved fish larviculture"
031996
Investigador responsável
Universidade de Lisboa Instituto Superior Técnico, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Portuguese Foundation for Science and Technology
Em curso
2016/07 - 2020/06 Harnessing the power of the microbial metamobilome: using marine sponges as models to uncover novel biotechnological appliances from symbiont communities
Provided by PTCRIS: 140172
Investigador responsável
Universidade de Lisboa Instituto Superior Técnico, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Fundação para a Ciência e a Tecnologia
2015/01 - 2015/12 Functional and taxonomic profiling of microbial communities in caves of the Algarve, Southern Portugal
Not applicable
Orientador
National Speleological Foundation
2014/08 - 2015/08 Deciphering the codes of communication between marine sponges and their symbionts: an integrative metabolomics-transcriptomics approach (additional support for Europe)
810402
Investigador
VolkswagenStiftung
Concluído
2014/03 - 2015/08 Illuminating the metabolism of foundational and elusive microbial symbionts in benthic ecosystems: a cultivation-independent quest for Hahellaceae (Gammaproteobacteria, Oceanospirillales) genomes
EXPL/MAR-EST/1664/2013
Orientador
Centro de Ciências do Mar, Portugal
 Portuguese Foundation for Science and Technology (FCT)
Concluído
2013/06 - 2015/05 Single cell genomics and metagenomics-aided cultivation of the unculturable: uncovering the function and metabolic features of Acidobacteria symbionts of marine sponges
Provided by PTCRIS: 130434
130434
Investigador responsável
Centro de Ciências do Mar, Portugal
 Associação para a Inovação e Desenvolvimento da FCT
Concluído
2011/06 - 2014/12 Waterborne seaweed metabolites as a green solution for antimicrobial therapy in aquaculture
112792
Investigador
Portuguese Foundation for Science and Technology (FCT)
2014/06 - 2014/08 Will an increase in extreme temperature anomalies limit the ability of marine organisms to adapt to long-term climate change
AdaptChange
Orientador
Research Executive Agency
Concluído
2012/01 - 2013/12 Rules of attraction: unveiling bacterial behavior in a host-driven chemical sphere
daad130764425719792
Investigador responsável
Portuguese Foundation for Science and Technology (FCT)
2010/04 - 2013/10 Global climate change and pollution: a synergy designed for disaster?
107916
Provided by PTCRIS: 107916
Investigador
Universidade de Coimbra
2011/09 - 2013/08 SEAWEED AD: anaerobic digestion of seaweed for biofuels
274373
Investigador
Research Executive Agency
2010/01 - 2013/06 Unlocking the bacterial diversity encrypted in the metagenomes of marine sponges
101431
Provided by PTCRIS: 101431
Investigador responsável
Centro de Ciências do Mar, Portugal
 Universidade de Coimbra

Projeto

Designação Financiadores
2019/03 - 2024/02 GEBA - Genomic Encyclopeadia of Bacteria and Archaea
GEBA - Genomic Encyclopeadia of Bacteria and Archaea
Investigador
DOE Joint Genome Institute, Estados Unidos
 DOE Joint Genome Institute
Em curso
2020/08 - 2022/07 Aquatic Symbiosis Genomics Project
Aquatic Symbiosis Genomics Project
Investigador
Wellcome Sanger Institute, Reino Unido
 Wellcome Sanger Institute
Em curso

Outro

Designação Financiadores
2012 - 2014 Sponge Microbiomes in Times of Global Change - A Contribution to the “Earth Microbiome Project"
DE-AC02-06CH11357
Investigador
Centro de Ciências do Mar, Portugal
Concluído
Produções

Publicações

Artigo em conferência
  1. Costa, Rodrigo. "Tackling the specificity of the marine sponge microbiome: a biogeographical approach". Trabalho apresentado em 2nd International Conference on Microbial Diversity: Microbial Interactions in Complex Ecosystems, 2013.
    Publicado
  2. Costa, Rodrigo. "Monitoring gfp-tagged bacterial antagonists in the rhizosphere of tomato plants". Trabalho apresentado em Multitrophic Interactions in Soil and Integrated Control, 2003.
    Publicado
Artigo em revista
  1. Coelho, Lígia Fonseca; Couceiro, Joana Fernandes; Keller-Costa, Tina; Valente, Sara Martinez; Ramalho, Tiago Pereirinha; Carneiro, Joana; Comte, Jérôme; et al. Autor correspondente: Costa, Rodrigo. "Structural shifts in sea ice prokaryotic communities across a salinity gradient in the subarctic". Science of The Total Environment 827 (2022): 154286. http://dx.doi.org/10.1016/j.scitotenv.2022.154286.
    10.1016/j.scitotenv.2022.154286
  2. Gracinda M. M. Sanches-Fernandes; Gianmaria Califano; Sara Castanho; Florbela Soares; Laura Ribeiro; Pedro Pousão-Ferreira; Leonardo Mata; Rodrigo Costa. "Effects of live feed manipulation with algal-derived antimicrobial metabolites on fish larvae microbiome assembly: A molecular-based assessment". Aquaculture Research (2022): https://doi.org/10.1111/are.15648.
    10.1111/are.15648
  3. "Peixoto, R., Voolstra, C.V., Sweet, M., Duarte, C.M., Carvalho, S., Villela, H., Lunshof, J.E., Walter, J., Woodhams, D.C., Walke, J.B., Gram, L., Roik, A., Hentschel, U., Thurber, R.V., Daisley, B., Ushijima, B., Daffonchio, D., Costa, R., Keller-Costa, T., et al. Implementing microbiome stewardship in rapidly declining ecosystems.". Nature Microbiology (2022):
    Aceite para publicação
  4. Dieterich, Cora L.; Probst, Silke I.; Ueoka, Reiko; Sandu, Ioana; Schäfle, Daniel; Molin, Michael Dal; Minas, Hannah A.; et al. "Aquimarins, Peptide Antibiotics with Amino-Modified C-Termini from a Sponge-Derived Aquimarina sp. Bacterium". Angewandte Chemie 134 8 (2021): http://dx.doi.org/10.1002/ange.202115802.
    10.1002/ange.202115802
  5. Coelho, Lígia F.; Madden, Jack; Kaltenegger, Lisa; Zinder, Stephen; Philpot, William; Esquível, M. Glória; Canário, João; et al. "Color Catalogue of Life in Ice: Surface Biosignatures on Icy Worlds". Astrobiology (2021): http://dx.doi.org/10.1089/ast.2021.0008.
    10.1089/ast.2021.0008
  6. I. Raimundo; R. Silva; L. Meunier; S. M. Valente; A. Lago-Lestón; T. Keller-Costa; R. Costa. "Functional metagenomics reveals differential chitin degradation and utilization features across free-living and host-associated marine microbiomes". Microbiome 9 1 (2021): https://doi.org/10.1186/s40168-020-00970-2.
    10.1186/s40168-020-00970-2
  7. Gracinda M. M. Sanches-Fernandes; Gianmaria Califano; Tina Keller-Costa; Sara Castanho; Florbela Soares; Laura Ribeiro; Pedro Pousão-Ferreira; et al. "Draft Genome Sequence of Vibrio jasicida 20LP, an Opportunistic Bacterium Isolated from Fish Larvae". Microbiology Resource Announcements 10 44 (2021): https://doi.org/10.1128/MRA.00813-21.
    10.1128/MRA.00813-21
  8. Gracinda M. M. Sanches-Fernandes; Gianmaria Califano; Tina Keller-Costa; Sara Castanho; Florbela Soares; Laura Ribeiro; Pedro Pousão-Ferreira; et al. "Draft Genome Sequence of Vibrio chagasii 18LP, Isolated from Gilthead Seabream (Sparus aurata) Larvae Reared in Aquaculture". Microbiology Resource Announcements (2021): https://doi.org/10.1128/MRA.00658-21.
    10.1128/MRA.00658-21
  9. Joana Fernandes Couceiro; Tina Keller-Costa; Matilde Marques; Nikos C. Kyrpides; Tanja Woyke; William B. Whitman; Rodrigo Costa; J. Cameron Thrash. "The Roseibium album (Labrenzia alba) Genome Possesses Multiple Symbiosis Factors Possibly Underpinning Host-Microbe Relationships in the Marine Benthos". Microbiology Resource Announcements (2021): https://doi.org/10.1128/MRA.00320-21.
    10.1128/MRA.00320-21
  10. Pascoal, Francisco; Costa, Rodrigo; Assmy, Philipp; Duarte, Pedro; Magalhães, Catarina. "Exploration of the Types of Rarity in the Arctic Ocean from the Perspective of Multiple Methodologies". Microbial Ecology (2021): http://dx.doi.org/10.1007/s00248-021-01821-9.
    10.1007/s00248-021-01821-9
  11. Michael Sweet; Helena Villela; Tina Keller-Costa; Rodrigo Costa; Stefano Romano; David G. Bourne; Anny Cárdenas; et al. "Insights into the Cultured Bacterial Fraction of Corals". mSystems 6 3 (2021): https://doi.org/10.1128/mSystems.01249-20.
    10.1128/mSystems.01249-20
  12. Keller-Costa, T.; Lago-Lestón, A.; Saraiva, J. P.; Toscan, R.; Silva, S. G.; Gonçalves, J.; Cox, C. J.; et al. Autor correspondente: Keller-Costa, T.. "Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals". Microbiome 9 1 (2021): http://dx.doi.org/10.1186/s40168-021-01031-y.
    Acesso aberto • 10.1186/s40168-021-01031-y
  13. Borges, Nuno; Keller-Costa, Tina; Sanches-Fernandes, Gracinda M.M.; Louvado, António; Gomes, Newton C.M.; Costa, Rodrigo. "Bacteriome Structure, Function, and Probiotics in Fish Larviculture: The Good, the Bad, and the Gaps". Annual Review of Animal Biosciences 9 1 (2021): 423-452. http://dx.doi.org/10.1146/annurev-animal-062920-113114.
    10.1146/annurev-animal-062920-113114
  14. Pascoal, Francisco; Costa, Rodrigo; Magalhães, Catarina. "The microbial rare biosphere: current concepts, methods and ecological principles". FEMS Microbiology Ecology 97 1 (2020): http://dx.doi.org/10.1093/femsec/fiaa227.
    10.1093/femsec/fiaa227
  15. Marques, Matilde; Borges, Nuno; Silva, Sandra Godinho; da Rocha, Ulisses Nunes; Lago-Lestón, Asunción; Keller-Costa, Tina; Costa, Rodrigo. "Metagenome-Assembled Genome Sequences of Three Uncultured Planktomarina sp. Strains from the Northeast Atlantic Ocean". Microbiology Resource Announcements 9 12 (2020): http://dx.doi.org/10.1128/mra.00127-20.
    10.1128/mra.00127-20
  16. Pascoal, Francisco; Magalhães, Catarina; Costa, Rodrigo. "The Link Between the Ecology of the Prokaryotic Rare Biosphere and Its Biotechnological Potential". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.00231.
    Aceite para publicação • 10.3389/fmicb.2020.00231
  17. Califano, Gianmaria; Kwantes, Michiel; Abreu, Maria Helena; Costa, Rodrigo; Wichard, Thomas. "Cultivating the Macroalgal Holobiont: Effects of Integrated Multi-Trophic Aquaculture on the Microbiome of Ulva rigida (Chlorophyta)". Frontiers in Marine Science 7 (2020): http://dx.doi.org/10.3389/fmars.2020.00052.
    Publicado • 10.3389/fmars.2020.00052
  18. Elham Karimi; Tina Keller-Costa; Beate M. Slaby; Cymon J. Cox; Ulisses N. da Rocha; Ute Hentschel; Rodrigo Costa. "Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria". Scientific Reports 9 1 (2019): https://doi.org/10.1038/s41598-019-38737-x.
    10.1038/s41598-019-38737-x
  19. Sandra G. Silva; Jochen Blom; Tina Keller-Costa; Rodrigo Costa. "Comparative genomics reveals complex natural product biosynthesis capacities and carbon metabolism across host-associated and free-living Aquimarina ( Bacteroidetes, Flavobacteriaceae ) species". Environmental Microbiology 21 11 (2019): 4002-4019. https://doi.org/10.1111/1462-2920.14747.
    Publicado • 10.1111/1462-2920.14747
  20. Eric J. N. Helfrich; Reiko Ueoka; Alon Dolev; Michael Rust; Roy A. Meoded; Agneya Bhushan; Gianmaria Califano; et al. "Automated structure prediction of trans-acyltransferase polyketide synthase products". Nature Chemical Biology (2019): https://doi.org/10.1038/s41589-019-0313-7.
    Publicado • 10.1038/s41589-019-0313-7
  21. Inês Raimundo; Sandra Godinho Silva; Rodrigo Costa; Tina Keller Costa. "Bioactive Secondary Metabolites from Octocoral-Associated Microbes—New Chances for Blue Growth". Marine Drugs (2018): http://www.mdpi.com/1660-3397/16/12/485.
    Acesso aberto • 10.3390/md16120485
  22. Cristina Díez-Vives; Ana I. S. Esteves; Rodrigo Costa; Shaun Nielsen; Torsten Thomas. "Detecting signatures of a sponge-associated lifestyle in bacterial genomes". Environmental Microbiology Reports (2018): https://doi.org/10.1111%2F1758-2229.12655.
    10.1111/1758-2229.12655
  23. Elham Karimi; Beate M Slaby; André R Soares; Jochen Blom; Ute Hentschel; Rodrigo Costa. "Metagenomic binning reveals versatile nutrient cycling and distinct adaptive features in alphaproteobacterial symbionts of marine sponges". FEMS Microbiology Ecology 94 6 (2018): https://doi.org/10.1093%2Ffemsec%2Ffiy074.
    10.1093/femsec/fiy074
  24. Gisele Nunes Rodrigues; Asunción Lago-Lestón; Rodrigo Costa; Tina Keller-Costa. "Draft Genome Sequence of Labrenzia sp. Strain EL143, a Coral-Associated Alphaproteobacterium with Versatile Symbiotic Living Capability and Strong Halogen Degradation Potential". Genome Announcements 6 10 (2018): https://doi.org/10.1128/genomeA.00132-18.
    10.1128/genomeA.00132-18
  25. Sandra Godinho Silva; Asunción Lago-Lestón; Rodrigo Costa; Tina Keller-Costa. "Draft Genome Sequence of Sphingorhabdus sp. Strain EL138, a Metabolically Versatile Alphaproteobacterium Isolated from the Gorgonian Coral Eunicella labiata". Genome Announcements 6 9 (2018): https://doi.org/10.1128/genomeA.00142-18.
    10.1128/genomeA.00142-18
  26. Costa, Rodrigo. "The effect of live feeds bathed with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae.". (2017):
    10.1007/s10695-017-0351-6.
  27. Costa, Rodrigo. "Morphogenesis of Ulva mutabilis (Chlorophyta) induced by Maribacter species (Bacteroidetes, Flavobacteriaceae).". (2017):
    10.1515/bot-2016-0083
  28. Califano, Gianmaria; Castanho, Sara; Soares, Florbela; Ribeiro, Laura; Cox, Cymon J.; Mata, Leonardo; Costa, Rodrigo. "Molecular Taxonomic Profiling of Bacterial Communities in a Gilthead Seabream (Sparus aurata) Hatchery". Frontiers in Microbiology 8 (2017): http://dx.doi.org/10.3389/fmicb.2017.00204.
    Publicado • 10.3389/fmicb.2017.00204
  29. Elham Karimi; Jorge M. S. Gonçalves; Margarida Reis; Rodrigo Costa. "Draft Genome Sequence of Microbacterium sp. Strain Alg239_V18, an Actinobacterium Retrieved from the Marine Sponge Spongia sp". Genome Announcements 5 3 (2017): https://doi.org/10.1128/genomeA.01457-16.
    10.1128/genomeA.01457-16
  30. Costa, Rodrigo. "Ecophysiological plasticity and bacteriome shift in the seagrass Halophila stipulacea along a depth gradient in the Northern Red Sea.". (2017):
    10.3389/fpls.2016.02015
  31. Elham Karimi; Miguel Ramos; Jorge M. S. Gonçalves; Joana R. Xavier; Margarida P. Reis; Rodrigo Costa. "Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium". Frontiers in Microbiology 8 (2017): https://doi.org/10.3389%2Ffmicb.2017.02499.
    10.3389/fmicb.2017.02499
  32. Costa, Rodrigo. "The sponge microbiome project". GigaScience (2017):
    10.1093/gigascience/gix077
  33. Costa, Rodrigo. "The gorgonian coral Eunicella labiata hosts a distinct prokaryotic consortium amenable to cultivation". (2017):
    doi.org/10.1093/femsec/fix143
  34. Francisco J. R. C. Coelho; Daniel F. R. Cleary; Rodrigo Costa; Marina Ferreira; Ana R. M. Polónia; Artur M. S. Silva; Mário M. Q. Simões; Vanessa Oliveira; Newton C. M. Gomes. "Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution". Molecular Ecology (2016): http://dx.doi.org/10.1111/mec.13779.
    10.1111/mec.13779
  35. Tina Keller-Costa; Rúben Silva; Asunción Lago-Lestón; Rodrigo Costa. "Genomic Insights into Aquimarina sp. Strain EL33, a Bacterial Symbiont of the Gorgonian Coral Eunicella labiata". Genome Announcements 4 4 (2016): https://doi.org/10.1128%2Fgenomea.00855-16.
    10.1128/genomea.00855-16
  36. Thomas, Torsten; Moitinho-Silva, Lucas; Lurgi, Miguel; Björk, Johannes R.; Easson, Cole; Astudillo-García, Carmen; Olson, Julie B.; et al. "Diversity, structure and convergent evolution of the global sponge microbiome". Nature Communications 7 1 (2016): http://dx.doi.org/10.1038/ncomms11870.
    Publicado • 10.1038/ncomms11870
  37. Cúcio, Catarina; Engelen, Aschwin H.; Costa, Rodrigo; Muyzer, Gerard. "Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific". Frontiers in Microbiology 7 (2016): http://dx.doi.org/10.3389/fmicb.2016.00440.
    10.3389/fmicb.2016.00440
  38. Telma Franco; Gianmaria Califano; Ana C. S. Gonçalves; Catarina Cúcio; Rodrigo Costa. "Draft Genome Sequence of Vibrio sp. Strain Evh12, a Bacterium Retrieved from the Gorgonian Coral Eunicella verrucosa". Genome Announcements 4 1 (2016): e01729-15. https://doi.org/10.1128/genomeA.01729-15.
    10.1128/genomeA.01729-15
  39. Grueneberg, Jan; Engelen, Aschwin H.; Costa, Rodrigo; Wichard, Thomas. "Macroalgal Morphogenesis Induced by Waterborne Compounds and Bacteria in Coastal Seawater". Plos One 11 1 (2016): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000367815600037&KeyUID=WOS:000367815600037.
    10.1371/journal.pone.0146307
  40. Goncalves, Ana C. S.; Franco, Telma; Califano, Gianmaria; Dowd, Scot E.; Pohnert, Georg; Costa, Rodrigo. "Draft Genome Sequence of Vibrio sp. Strain Vb278, an Antagonistic Bacterium Isolated from the Marine Sponge Sarcotragus spinosulus". Genome announcements 3 3 (2015): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:26021918&KeyUID=MEDLINE:26021918.
    10.1128/genomeA.00521-15
  41. Coelho, Francisco J. R. C.; Cleary, Daniel F. R.; Rocha, Rui J. M.; Calado, Ricardo; Castanheira, Jose M.; Rocha, Silvia M.; Silva, Artur M. S.; et al. "Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities". Global Change Biology 21 5 (2015): 1871-1886. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000353220500011&KeyUID=WOS:000353220500011.
    10.1111/gcb.12801
  42. Kopf, Anna; Bicak, Mesude; Kottmann, Renzo; Schnetzer, Julia; Kostadinov, Ivaylo; Lehmann, Katja; Fernandez-Guerra, Antonio; et al. "The ocean sampling day consortium". GigaScience 4 (2015): 27-27. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:26097697&KeyUID=MEDLINE:26097697.
    10.1186/s13742-015-0066-5
  43. Califano, Gianmaria; Franco, Telma; Goncalves, Ana C. S.; Castanho, Sara; Soares, Florbela; Ribeiro, Laura; Mata, Leonardo; Costa, Rodrigo. "Draft Genome Sequence of Aliivibrio fischeri Strain 5LC, a Bacterium Retrieved from Gilthead Sea Bream (Sparus aurata) Larvae Reared in Aquaculture". Genome announcements 3 3 (2015): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:26044435&KeyUID=MEDLINE:26044435.
    10.1128/genomeA.00593-15
  44. Hardoim, Cristiane; Costa, Rodrigo. "Microbial Communities and Bioactive Compounds in Marine Sponges of the Family Irciniidae—A Review". Marine Drugs 12 10 (2014): 5089-5122. http://dx.doi.org/10.3390/md12105089.
    Publicado • 10.3390/md12105089
  45. Keller-Costa, Tina; Jousset, Alexandre; van Overbeek, Leo; van Elsas, Jan Dirk; Costa, Rodrigo. "The Freshwater Sponge Ephydatia fluviatilis Harbours Diverse Pseudomonas Species (Gammaproteobacteria, Pseudomonadales) with Broad-Spectrum Antimicrobial Activity". PLoS ONE 9 2 (2014): e88429. http://dx.doi.org/10.1371/journal.pone.0088429.
    10.1371/journal.pone.0088429
  46. Hardoim, Cristiane C. P.; Cardinale, Massimiliano; Cucio, Ana C. B.; Esteves, Ana I. S.; Berg, Gabriele; Xavier, Joana R.; Cox, Cymon J.; Costa, Rodrigo. "Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges". Frontiers in Microbiology 5 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000345747500001&KeyUID=WOS:000345747500001.
    10.3389/fmicb.2014.00611
  47. Alexandrino, Maria; Costa, Rodrigo; Canario, Adelino V. M.; Costa, Maria C.. "Clostridia Initiate Heavy Metal Bioremoval in Mixed Sulfidogenic Cultures". Environmental Science & Technology 48 6 (2014): 3378-3385. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000333776000036&KeyUID=WOS:000333776000036.
    10.1021/es4052044
  48. Hardoim, Cristiane C. P.; Costa, Rodrigo. "Temporal dynamics of prokaryotic communities in the marine sponge Sarcotragus spinosulus". Molecular Ecology 23 12 (2014): 3097-3112. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000337610600016&KeyUID=WOS:000337610600016.
    10.1111/mec.12789
  49. Costa, R.; Keller-Costa, T.; Gomes, N.C.M.; da Rocha, U.N.; van Overbeek, L.; van Elsas, J.D.. "Evidence for Selective Bacterial Community Structuring in the Freshwater Sponge Ephydatia fluviatilis". Microbial Ecology 65 1 (2013): 232-244. http://www.scopus.com/inward/record.url?eid=2-s2.0-84872340581&partnerID=MN8TOARS.
    10.1007/s00248-012-0102-2
  50. Coelho, F.J.R.C.; Rocha, R.J.M.; Pires, A.C.C.; Ladeiro, B.; Castanheira, J.M.; Costa, R.; Almeida, A.; et al. "Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities". Global Change Biology 19 8 (2013): 2584-2595. http://www.scopus.com/inward/record.url?eid=2-s2.0-84880132597&partnerID=MN8TOARS.
    10.1111/gcb.12227
  51. Hardoim, C.C.P.; Cox, C.J.; Peixoto, R.S.; Rosado, A.S.; Costa, R.; van Elsas, J.D.. "Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva". Brazilian Journal of Microbiology 44 1 (2013): 329-334. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879150283&partnerID=MN8TOARS.
    10.1590/S1517-83822013000100048
  52. Silva, Y.J.; Manco, S.; Costa, R.; Rodrigues, V.; Dias, J.; Ferreira, H.; Pousão-Ferreira, P.; et al. "Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata (Linnaeus, 1758)". Aquaculture Research (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84889044428&partnerID=MN8TOARS.
    10.1111/are.12336
  53. Esteves, A.I.S.; Hardoim, C.C.P.; Xavier, J.R.; Gonçalves, J.M.S.; Costa, R.. "Molecular richness and biotechnological potential of bacteria cultured from Irciniidae sponges in the north-east Atlantic". FEMS Microbiology Ecology 85 3 (2013): 519-536. http://www.scopus.com/inward/record.url?eid=2-s2.0-84881556290&partnerID=MN8TOARS.
    10.1111/1574-6941.12140
  54. Hardoim, C.C.P.; Esteves, A.I.S.; Pires, F.R.; Gonçalves, J.M.S.; Cox, C.J.; Xavier, J.R.; Costa, R.. "Phylogenetically and Spatially Close Marine Sponges Harbour Divergent Bacterial Communities". PLoS ONE 7 12 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84871657844&partnerID=MN8TOARS.
    10.1371/journal.pone.0053029
  55. Gomes NC; Cleary DF; Calado R; Costa R. "Mangrove bacterial richness.". (2011): http://europepmc.org/abstract/med/21966560.
    10.4161/cib.4.4.15253
  56. Van Elsas, J.D.; Semenov, A.V.; Costa, R.; Trevors, J.T.. "Survival of Escherichia coli in the environment: Fundamental and public health aspects". ISME Journal 5 2 (2011): 173-183. http://www.scopus.com/inward/record.url?eid=2-s2.0-78149408759&partnerID=MN8TOARS.
    10.1038/ismej.2010.80
  57. Alexandrino, M.; Macías, F.; Costa, R.; Gomes, N.C.M.; Canário, A.V.M.; Costa, M.C.. "A bacterial consortium isolated from an Icelandic fumarole displays exceptionally high levels of sulfate reduction and metals resistance". Journal of Hazardous Materials 187 1-3 (2011): 362-370. http://www.scopus.com/inward/record.url?eid=2-s2.0-79951853200&partnerID=MN8TOARS.
    10.1016/j.jhazmat.2011.01.035
  58. Dini-Andreote, F.; Andreote, F.D.; Costa, R.; Taketani, R.G.; van Elsas, J.D.; Araújo, W.L.. "Bacterial soil community in a Brazilian sugarcane field". Plant and Soil 336 1 (2010): 337-349. http://www.scopus.com/inward/record.url?eid=2-s2.0-78049275323&partnerID=MN8TOARS.
    10.1007/s11104-010-0486-z
  59. Gomes, N.C.; Flocco, C.G.; Costa, R.; Junca, H.; Vilchez, R.; Pieper, D.H.; Krögerrecklenfort, E.; et al. "Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia". FEMS Microbiology Ecology 74 2 (2010): 276-290. http://www.scopus.com/inward/record.url?eid=2-s2.0-78649383108&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2010.00962.x
  60. Costa, R.; Van Aarle, I.M.; Mendes, R.; Van Elsas, J.D.. "Genomics of pyrrolnitrin biosynthetic loci: Evidence for conservation and whole-operon mobility within Gram-negative bacteria". Environmental Microbiology 11 1 (2009): 159-175. http://www.scopus.com/inward/record.url?eid=2-s2.0-58149242718&partnerID=MN8TOARS.
    10.1111/j.1462-2920.2008.01750.x
  61. Hardoim, C.C.P.; Costa, R.; V.araújo, F.; Hajdu, E.; Peixoto, R.; Lins, U.; Rosado, A.S.; Van, J.D.E.. "Diversity of bacteria in the marine sponge aplysina fulva in brazilian coastal waters". Applied and Environmental Microbiology 75 10 (2009): 3331-3343. http://www.scopus.com/inward/record.url?eid=2-s2.0-66249094562&partnerID=MN8TOARS.
    10.1128/AEM.02101-08
  62. van Elsas, J.D.; Costa, R.; Jansson, J.; Sjöling, S.; Bailey, M.; Nalin, R.; Vogel, T.M.; van Overbeek, L.. "The metagenomics of disease-suppressive soils - experiences from the METACONTROL project". Trends in Biotechnology 26 11 (2008): 591-601. http://www.scopus.com/inward/record.url?eid=2-s2.0-53949095625&partnerID=MN8TOARS.
    10.1016/j.tibtech.2008.07.004
  63. Costa, R.; Gomes, N.C.M.; Krögerrecklenfort, E.; Opelt, K.; Berg, G.; Smalla, K.. "Pseudomonas community structure and antagonistic potential in the rhizosphere: Insights gained by combining phylogenetic and functional gene-based analyses". Environmental Microbiology 9 9 (2007): 2260-2273. http://www.scopus.com/inward/record.url?eid=2-s2.0-34547686154&partnerID=MN8TOARS.
    10.1111/j.1462-2920.2007.01340.x
  64. Van Elsas, J.D.; Costa, R.. "Molecular assessment of soil microbial communities with potential for plant disease suppression". Biotechnology and Plant Disease Management (2007): 498-517. http://www.scopus.com/inward/record.url?eid=2-s2.0-66249094793&partnerID=MN8TOARS.
  65. Adesina, M.F.; Lembke, A.; Costa, R.; Speksnijder, A.; Smalla, K.. "Screening of bacterial isolates from various European soils for in vitro antagonistic activity towards Rhizoctonia solani and Fusarium oxysporum: Site-dependent composition and diversity revealed". Soil Biology and Biochemistry 39 11 (2007): 2818-2828. http://www.scopus.com/inward/record.url?eid=2-s2.0-34547730211&partnerID=MN8TOARS.
    10.1016/j.soilbio.2007.06.004
  66. Costa, R.; Götz, M.; Mrotzek, N.; Lottmann, J.; Berg, G.; Smalla, K.. "Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds". FEMS Microbiology Ecology 56 2 (2006): 236-249. http://www.scopus.com/inward/record.url?eid=2-s2.0-33645977196&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2005.00026.x
  67. Götz, M.; Gomes, N.C.M.; Dratwinski, A.; Costa, R.; Berg, G.; Peixoto, R.; Mendonça-Hagler, L.; Smalla, K.. "Survival of gfp-tagged antagonistic bacteria in the rhizosphere of tomato plants and their effects on the indigenous bacterial community". FEMS Microbiology Ecology 56 2 (2006): 207-218. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646014149&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2006.00093.x
  68. Berg, G.; Opelt, K.; Zachow, C.; Lottmann, J.; Götz, M.; Costa, R.; Smalla, K.. "The rhizosphere effect on bacteria antagonistic towards the pathogenic fungus Verticillium differs depending on plant species and site". FEMS Microbiology Ecology 56 2 (2006): 250-261. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646003568&partnerID=MN8TOARS.
    10.1111/j.1574-6941.2005.00025.x
  69. Costa, R.; Salles, J.F.; Berg, G.; Smalla, K.. "Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants". Environmental Microbiology 8 12 (2006): 2136-2149. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750919098&partnerID=MN8TOARS.
    10.1111/j.1462-2920.2006.01096.x
  70. Costa, R.; Gomes, N.C.M.; Peixoto, R.S.; Rumjanek, N.; Berg, G.; Mendonça-Hagler, L.C.S.; Smalla, K.. "Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm". Soil Biology and Biochemistry 38 8 (2006): 2434-2447. http://www.scopus.com/inward/record.url?eid=2-s2.0-33746863682&partnerID=MN8TOARS.
    10.1016/j.soilbio.2006.03.003
  71. Meier, J.; Costa, R.; Smalla, K.; Boehrer, B.; Wendt-Potthoff, K.. "Temperature dependence of Fe(III) and sulfate reduction rates and its effect on growth and composition of bacterial enrichments from an acidic pit lake neutralization experiment". Geobiology 3 4 (2005): 261-274. http://www.scopus.com/inward/record.url?eid=2-s2.0-33644826898&partnerID=MN8TOARS.
    10.1111/j.1472-4669.2006.00065.x
  72. Berg, G.; Zachow, C.; Lottmann, J.; Götz, M.; Costa, R.; Smalla, K.. "Impact of plant species and site on rhizosphere-associated fungi antagonistic to Verticillium dahliae Kleb.". Applied and Environmental Microbiology 71 8 (2005): 4203-4213. http://www.scopus.com/inward/record.url?eid=2-s2.0-23744446235&partnerID=MN8TOARS.
    10.1128/AEM.71.8.4203-4213.2005
  73. Costa, R.; Gomes, N.C.M.; Milling, A.; Smalla, K.. "An optimized protocol for simultaneous extraction of DNA and RNA from soils". Brazilian Journal of Microbiology 35 3 (2004): 230-234. http://www.scopus.com/inward/record.url?eid=2-s2.0-19944409539&partnerID=MN8TOARS.
  74. Marcial Gomes, N.C.; Fagbola, O.; Costa, R.; Gouvea Rumjanek, N.; Buchner, A.; Mendona-Hagler, L.; Smalla, K.. "Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics". Applied and Environmental Microbiology 69 7 (2003): 3758-3766. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038493638&partnerID=MN8TOARS.
    10.1128/AEM.69.7.3758-3766.2003
  75. Gomes, N.C.M.; Heuer, H.; Schönfeld, J.; Costa, R.; Mendonça-Hagler, L.; Smalla, K.. "Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis". Plant and Soil 232 1-2 (2001): 167-180. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034948012&partnerID=MN8TOARS.
    10.1023/A:1010350406708
Artigo em revista (magazine)
  1. Costa, Rodrigo. "Esponjas marinhas: do mar à farmácia", Boletim de Biotecnologia, 2014, http://www.forumoceano.pt/files/6_Comunicacao/61_artigos/Boletim_SPBT_julh2014.pdf?d=37fr.
Recurso online
  1. Karimi, Elham; Costa, Rodrigo. Isolation and genome sequencing of 14 Spongia sp. bacterial associates expands the taxonomic and functional breadth of the cultivatable marine sponge microbiome. 2020. https://doi.org/10.1101/2020.03.20.000216.
Tese / Dissertação
  1. Costa, Rodrigo. "Microbial community structure and function in the rhizosphere of crop plants: a molecular study". Doutoramento, 2006.
  2. Costa, Rodrigo. "Variabilidade e diversidade genética de comunidades bacterianas associadas à rizosfera de Milho (Zea mays L. Merril) em um agroecossistema do Rio de Janeiro". Mestrado, Universidade Federal do Rio de Janeiro, 2001.

Outros

Outra produção
  1. Insights into the cultured bacterial fraction of corals. 2020. Michael Sweet; Helena Villela; Tina Keller-Costa; Rodrigo Costa; Stefano Romano; David Bourne; Anny Cardenas; et al. https://doi.org/10.21203/rs.3.rs-105866/v1.
    10.21203/rs.3.rs-105866/v1
  2. Marine microbial diversity. Book Chapter. Costa, R., Kimes, N.E., Nunes da Rocha, U.,López-Pérez, M., Esteves, A.I.S., Mizuno, C.M. Marine microbial diversity. In: T.B. Rodrigues and A.E.T. Silva (eds.). Molecular Diversity of Environmental Prokaryotes. CRC Press, Boca Raton USA (2016).. 2016. Costa, Rodrigo; Kimes, N.E.; Nunes da Rocha, U.; Esteves, A.I.S.; Mizuno, C.M..
  3. Chemosphere of the marine green alga Ulva: induction of algal morphogenesis by bacterial compounds. Conference Paper. Wichard, T., Grueneberg, J., Engelen, A., & Costa R. Chemosphere of the marine green alga Ulva: induction of algal morphogenesis by bacterial compounds. European Journal of Phycology 46: 86-86 (2011).. 2011. Wichard, T.; Costa, Rodrigo; Grueneberg, J.; Engelen, A..
  4. Molecular fingerprinting techniques of microbial communities. Book Chapter. Oros-Sichler, M., Costa, R. §, Heuer, H. & Smalla, K. Molecular fingerprinting techniques of microbial communities. In: Modern Soil Microbiology II (J.D. van Elsas, J.T. Trevors and J.K. Jansson Eds.), CRC Press, Boca Raton USA (2007). 2007. Oros-Sichler M.; Costa, Rodrigo; Heuer, H.; Smalla, K..
  5. Molecular ecology of fungal and bacterial Verticillium antagonists in/on different host plants and soils. Conference Proceedings Proceedings of the meeting “Fundamental and Practical Approaches to Increase Biocontrol Efficacy”, Spa, Belgium, 2006. International Organization for Biological Control (IOBC) Bulletin 30: 249-253 (2007).. 2007. Berg, G.; Opelt, K.; Zachow, C.; Götz, M.; Costa, Rodrigo.
  6. Rapid simultaneous extraction of DNA and RNA from bulk and rhizosphere soil. Book Chapter. 2004. Gomes, Newton; Costa, Rodrigo; Smalla, Kornelia.
Atividades

Apresentação oral de trabalho

Título da apresentação Nome do evento
Anfitrião (Local do evento)
2019 Functional signatures of the microbiomes of octocorals in health and disease. Microbiotec19
(Coimbra, Portugal)
2019 The microbiome of keratose marine sponges: diversity, function and biotechnology. Prokaryotic Research and Development Program Meeting, Joint Genome Institute (DOE-JGI)
Laurence Berkeley National Laboratory, UC-Berkeley, USA (Estados Unidos)
2019 The MicroEcoEvo bacterial culture collection Genomic Encyclopaedia of Bacteria and Archaea (GEBA, edition VI) kick-off meeting
Joint Genome Institute (DOE-JGI), Laurence Berkeley National Laboratory, UC-Berkeley, USA (Reino Unido)
2019 Functional signatures of the microbiomes of octocorals in health and disease Science & Technology Seminar, Joint Genome Institute (DOE-JGI)
Laurence Berkeley National Laboratory, UC-Berkeley, USA (Estados Unidos)
2018 Versatile nutrient exchange and host detoxification and chemical defence capacities in the cultivable microbial dark matter of marine sponges 17th International Symposium on Microbial Ecology
(Leipzig, Alemanha)
2018 On the road towards predicting microbial systems: Is modelling guiding the right way? Round table panelist 17th International Symposium on Microbial Ecology (ISME17)
(Alemanha)
2018 Exploring the depths of microbial diversity: Metagenomics International Microorganism Day
Instituto Superior Técnico (Portugal)
2018 Metagenomic insights into the marine sponge microbiome – Illuminating the evolution and metabolism of symbiotic Alphaproteobacteria Mini-Symposium “Networking and cooperation in Microbial Ecology”
Julius Kühn Institute (Braunschweig, Alemanha)
2018 The Microcontrol project: strategies and protocols for microbiome manipulation of fish 1st Workshop on Beneficial Microorganisms for Marine Organisms (BMMO)
UFZ-Leipzig (Alemanha)
2018 The microbiome of keratose marine sponges: diversity, function and biotechnology Encontro Ciência 2018
FCT (Lisboa, Portugal)
2018 Metagenomic insights into the marine sponge microbiome – Illuminating the evolution and metabolism of symbiotic Alphaproteobacteria iBB seminar series
Instituto Superior Técnico (Portugal)
2018 The microbiome of keratose marine sponges: diversity, function and biotechnology Elixir-Excelerate Workshop on Marine Metagenomics
Instituto Calouste Gulbenkian (Portugal)
2018 The microbiome of keratose marine sponges: diversity, function and biotechnology Seminar Series
Departamento de Oceanografia e Pescas, Universidade dos Açores (Portugal)
2017 Multi-omics and laboratory-assisted evaluation of the chitin-degrading capacities of gorgonian coral-associated bacteria Microbioec17
(Portugal)
2017 Comparative metagenomics reveals unique life strategies of the endosymbiotic consortium inhabiting the iconic bath sponge Spongia officinalis 14th Symposium on Bacterial Genetics and Ecology
(Reino Unido)
2017 Diversity, function and biotechnology of marine microbial communities - a metagenomics perspective Ciclo de Conferências redeMAR - Qual o Potencial e o Impacto da Biotecnologia Marinha nas Ciências Médicas e Farmacêuticas?
University of Lisbon (Lisboa, Portugal)
2017 Meeting the aliens: morphogenesis induction of the green alga Ulva mutabilis by bacterial symbionts of marine sponges 1st AquaRio workshop on marine microbiome diversity and manipulation
Rio de Janeiro Federal University (Brasil)
2017 Use of an oligrotrophic culture medium enables captivation of diverse alphaprobacterial lineages from the marine sponge Spongia officinalis 3rd Annual Conference of the interdisciplinary thematic network redeMAR - Ocean and Future(s)
University of Lisbon (Portugal)

Orientação

Título / Tema
Papel desempenhado 		Curso (Tipo)
Instituição / Organização
2022/06/22 - Atual Sustainable production of bioactive metabolites from octocoral symbionts. MIT-Portugal PhD programme.
Coorientador de Joana F. Couceiro
 Programa Doutoral em Biotecnologia e Biociências (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/05/01 - Atual Microbiome therapy for improved coral health and reef resilience
Orientador
 Biotechnology (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/01/01 - Atual Deciphering the roles of the prokaryotic rare biosphere in the Arctic Ocean under climate change”. PhD Programme in Biology, Faculty of Sciences, Porto University, Portugal.
Coorientador
 PhD Program in Biology (Doutoramento)
Universidade do Porto Faculdade de Ciências, Portugal
2020/09 - Atual Exploiting the healing capacity of nature´s microbiomes for improved fish well-being in aquaculture
Orientador de André Magalhães
 Microbiology (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020/03 - Atual Cracking the code: exploring the virome of the marine sponge S. officinalis.
Orientador
 Molecular and Microbioal Biology (Mestrado)
Universidade do Algarve, Portugal
2020 - Atual Chitin degradation capacities of synthetic microbial communities
Orientador
 Bioengineering (Doutoramento)
Université Libre de Bruxelles, Bélgica
2018 - Atual Secondary metabolite biosynthesis by Aquimarina species: emerging properties and bioactivities from the rare marine biosphere
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - Atual Astrobiology analyses of icy biomes as a proxy for extra-terrestrial life in icy moons
Coorientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - Atual Deciphering the coding potential of mobile genetic elements (the “mobilome”) in the microbiomes of marine sponges and corals
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - Atual Use of environmentally-sustainable procedures to prevent disease incidence in fish larviculture
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020/02 - 2021/01 Discovering the polar microbiome: structure and diversity of prokaryotic communities in ice and seawater along a salinity gradient in the Subarctic.
Orientador de Joana Couceiro
 Bioengineering (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2019 Assessment of antimicrobial activities of marine bacteria against human pathogens
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2019 Assessment of anticancer activities in marine sponge- and coral- associated bacteria
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2019 Tackling the diversity of the marine microbial rare biosphere: methodological challenges and ecological insights
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2018 Addressing the relationship between Staphylococcus aureus abundance in the human skin microbiome and atopic dermatitis: a metagenomics approach
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2018 Chitinolytic activity of bacterial symbionts from the gorgonian coral Eunicella labiata
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2018 Chitin breakdown by bacterial symbionts of marine sponges: integrating experimental and genomics approaches
Coorientador
Université Libre de Bruxelles, Bélgica
2017 - 2018 Bacterial diversity of the gorgonian coral Eunicella labiata: how much can we cultivate?
Orientador
2013 - 2018 Metagenomics and functional genomics of bacterial symbionts of Spongia (Porifera, Dictyoceratida) specimens from the Algarvian shore (South Portugal)
Orientador
Universidade do Algarve, Portugal
2016 - 2017 A bioinformatic approach to the pathogenic potential of Vibrio crassostreae in marine sponges and corals
Orientador
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2017 Approaching the mutualistic versus pathogenic duality in symbiotic Vibrio species: a comparative genomics endeavor
Orientador
2015 - 2016 Diversity and specificity of the marine sponge microbiome inspected by next generation sequencing
Orientador
2014 - 2015 Worldwide diversity of sponge-associated Acidobacteria
Orientador
2013 - 2014 The potential of Asparagopsis armata to control the bacterial load associated to live feed to improve Seabream (Sparus aurata) larvae performance
Coorientador
Universidade do Algarve, Portugal
2010 - 2014 Microbiome diversity and composition in the phylogenetically related marine sponges Sarcotragus spinosulus and Ircinia variabilis
Orientador
Universidade do Algarve, Portugal
2012 - 2013 Molecular characterization of microbial communities in marine sponges and green algae: structural and functional aspects
Orientador

Organização de evento

Nome do evento
Tipo de evento (Tipo de participação) 		Instituição / Organização
2019/05/26 - 2019/05/30 Chair of the 15th Symposium on Bacterial Genetics and Ecology (BAGECO15, https://www.bageco.org/). Lisbon, May 26-30, 2019. (2019/05/26 - 2019/05/30)

Curso / Disciplina lecionado

Disciplina Curso (Tipo) Instituição / Organização
2020 - Atual Founder, coordinator and main teacher of the new Curricular Unit “Microbiomes” (6 ECTS, 2nd semester since 2019/20). (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Atual Teaches theory and practicals in the Curricular Unit “Functional and Comparative Genomics”. (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Atual Teaches theory in the Curricular Unit “Comparative Genomics and Bioinformatics”. (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Atual Teaches lab practicals in the Curricular Units “Molecular Biotechnology” and “Genetic Engineering”. (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Atual Coordinator and main teacher of the Curricular Unit “Fundamentals of Ecology”. (Licenciatura) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Atual Teaches lab practicals in the Curricular Unit “Microbiology”. Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Atual Teaches lab practicals in the Curricular Unit “Molecular Biology and Biochemistry”. (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal

Membro de associação

Nome da associação Tipo de participação
2015 - Atual Ambassador of the International Society for Microbial Ecology (ISME) in Portugal (since 2015 - https://www.isme-microbes.org/ambassadors). Senior Ambassador

Membro de comissão

Descrição da atividade
Tipo de participação 		Instituição / Organização
2019 - Atual Invited Member of the Editorial Board of Scientific Reports (since 2019).
Distinções

Prémio

2020 Excellent Teacher, Curricular Unit Microbiomes, Class of 2020
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 “Excellent Teacher”, Fundamentals of Ecology Class of 2018/19
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 Ambassador of the International Society for Microbial Ecology (ISME) in Portugal (since 2015 - https://www.isme-microbes.org/ambassadors).
2015 Independent Research Scientist Contract under the “FCT Investigator” Programme, Portugal (2015)
Fundação para a Ciência e a Tecnologia, Portugal
2008 Independent Research Scientist Contract under the FCT “Ciência 2007” Programme, Portugal (2008-2013)
Fundação para a Ciência e a Tecnologia, Portugal
2006 Magna cum laude mentioning on Ph.D. Diploma. Technical University of Braunschweig, Germany (2006)
Technische Universität Braunschweig, Alemanha
2001 “Excellent” (“A”) grade on M.Sc. studies. Federal University of Rio de Janeiro, Brazil (2001)
Universidade Federal do Rio de Janeiro, Brasil
1998 Cum laude mentioning on B.Sc. Diploma (grade: 8.4 in 10). Federal University of Rio de Janeiro, Brazil (1998)
Universidade Federal do Rio de Janeiro, Brasil

Outra distinção

2019 Rated “Excellent” in the last evaluation of performance of teaching staff at IST-ULisbon (2019).
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 Chair of the 15th Symposium on Bacterial Genetics and Ecology (BAGECO15, https://www.bageco.org/). Lisbon, May 26-30, 2019.
2019 Invited affiliate (Research Scientist) of the Lawrence Berkeley National Laboratory (LBNL), Department of Energy of the USA, Joint Genome Institute (DOE-JGI), Berkeley, USA (since 2019).
2019 Invited Member of the Editorial Board of Scientific Reports (since 2019).
2013 Research Article Highlight (Editor Choice) in FEMS Microbiology Ecology, September 2013 Issue, for “Molecular richness and biotechnological potential of bacteria cultured from Irciniidae sponges in the Northeast Atlantic” (corresponding author).
2009 Supervisor of the PhD Grant proposal by Cristiane C.P. Hardoim, ranked #1 nationwide by the Biological Sciences evaluation panel of FCT